####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS498_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 6 - 41 4.63 6.63 LCS_AVERAGE: 84.35 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 15 - 34 1.97 8.67 LCS_AVERAGE: 43.37 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 5 - 15 0.92 9.45 LONGEST_CONTINUOUS_SEGMENT: 11 6 - 16 0.85 8.88 LCS_AVERAGE: 20.46 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 16 23 0 3 10 14 16 18 19 22 23 24 25 26 27 29 30 32 34 35 36 38 LCS_GDT Q 2 Q 2 4 16 23 0 3 5 7 10 15 17 20 23 24 25 26 27 28 30 32 33 35 36 38 LCS_GDT E 3 E 3 4 16 23 3 3 5 8 14 18 20 22 23 24 25 27 29 32 33 36 37 38 38 39 LCS_GDT T 4 T 4 4 16 23 3 3 6 11 14 18 20 22 23 24 25 27 28 30 33 36 37 38 38 39 LCS_GDT R 5 R 5 11 16 30 3 6 9 12 14 18 19 22 23 24 25 26 27 29 30 32 34 37 38 39 LCS_GDT K 6 K 6 11 16 36 3 8 11 14 16 18 20 22 23 24 25 26 28 30 33 36 37 38 38 39 LCS_GDT K 7 K 7 11 16 36 4 9 11 14 16 18 20 22 23 24 25 28 31 33 34 36 37 38 38 39 LCS_GDT C 8 C 8 11 16 36 5 9 11 14 16 18 20 22 23 24 25 30 32 33 34 36 37 38 38 39 LCS_GDT T 9 T 9 11 16 36 5 9 11 14 16 18 20 22 23 26 29 31 32 33 34 36 37 38 38 39 LCS_GDT E 10 E 10 11 16 36 5 9 11 14 16 18 20 22 23 26 29 31 32 33 34 36 37 38 38 39 LCS_GDT M 11 M 11 11 16 36 5 9 11 14 16 18 20 24 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT K 12 K 12 11 16 36 5 9 11 14 16 18 24 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT K 13 K 13 11 16 36 5 9 11 14 16 18 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT K 14 K 14 11 16 36 4 9 11 14 16 18 21 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT F 15 F 15 11 20 36 5 9 11 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT K 16 K 16 11 20 36 5 7 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT N 17 N 17 9 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT C 18 C 18 9 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT E 19 E 19 8 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT V 20 V 20 8 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT R 21 R 21 8 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT C 22 C 22 8 20 36 3 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT D 23 D 23 8 20 36 3 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT E 24 E 24 6 20 36 3 7 12 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT S 25 S 25 6 20 36 4 7 10 14 19 22 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT N 26 N 26 6 20 36 3 5 9 15 19 20 24 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT H 27 H 27 9 20 36 3 9 10 15 19 22 22 25 26 29 30 31 31 32 34 35 36 38 38 39 LCS_GDT C 28 C 28 9 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT V 29 V 29 9 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT E 30 E 30 9 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT V 31 V 31 9 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT R 32 R 32 9 20 36 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT C 33 C 33 9 20 36 5 10 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT S 34 S 34 9 20 36 3 9 11 15 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT D 35 D 35 9 15 36 3 7 9 14 19 22 23 25 26 28 30 31 31 32 34 35 37 38 38 39 LCS_GDT T 36 T 36 7 15 36 4 5 11 15 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT K 37 K 37 7 15 36 4 5 10 15 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT Y 38 Y 38 7 15 36 4 5 11 15 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT T 39 T 39 7 15 36 5 7 9 14 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT L 40 L 40 6 15 36 3 7 11 15 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_GDT C 41 C 41 6 15 36 3 7 9 14 18 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 LCS_AVERAGE LCS_A: 49.40 ( 20.46 43.37 84.35 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 11 14 16 20 23 25 27 29 29 30 31 32 33 34 36 37 38 38 39 GDT PERCENT_AT 12.20 26.83 34.15 39.02 48.78 56.10 60.98 65.85 70.73 70.73 73.17 75.61 78.05 80.49 82.93 87.80 90.24 92.68 92.68 95.12 GDT RMS_LOCAL 0.15 0.62 0.92 1.26 1.78 1.98 2.34 2.56 2.83 2.83 2.96 3.11 3.72 4.00 3.96 4.79 4.90 5.04 5.04 5.29 GDT RMS_ALL_AT 9.75 9.37 9.19 8.66 9.35 9.02 8.45 8.29 7.95 7.95 8.41 8.19 7.03 6.76 7.24 6.14 6.18 6.26 6.26 6.13 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 23.020 0 0.186 0.657 23.963 0.000 0.000 23.963 LGA Q 2 Q 2 22.782 0 0.296 0.962 30.170 0.000 0.000 30.170 LGA E 3 E 3 15.479 0 0.158 1.138 18.067 0.000 0.000 16.276 LGA T 4 T 4 13.967 0 0.097 1.201 16.828 0.000 0.000 16.828 LGA R 5 R 5 17.317 0 0.133 0.430 26.188 0.000 0.000 26.188 LGA K 6 K 6 16.210 0 0.116 1.168 17.627 0.000 0.000 17.627 LGA K 7 K 7 12.328 0 0.069 0.685 13.895 0.000 0.000 13.856 LGA C 8 C 8 10.548 0 0.080 0.093 11.624 0.000 0.000 11.175 LGA T 9 T 9 10.473 0 0.056 0.864 14.388 0.000 0.000 14.388 LGA E 10 E 10 9.549 0 0.017 0.733 12.026 0.000 0.000 12.026 LGA M 11 M 11 6.212 0 0.069 1.354 7.648 2.727 14.318 1.348 LGA K 12 K 12 4.935 0 0.036 0.602 9.856 10.000 4.444 9.856 LGA K 13 K 13 4.434 0 0.069 0.528 8.870 9.091 4.040 8.367 LGA K 14 K 14 4.892 0 0.038 0.895 10.604 5.000 2.222 10.604 LGA F 15 F 15 1.730 0 0.370 1.492 5.972 48.636 31.901 5.972 LGA K 16 K 16 0.574 0 0.047 0.978 4.198 86.364 55.556 3.663 LGA N 17 N 17 1.263 0 0.187 0.222 1.719 69.545 62.045 1.591 LGA C 18 C 18 1.793 0 0.061 0.724 4.144 50.909 41.212 4.144 LGA E 19 E 19 1.710 0 0.132 0.949 4.434 54.545 44.848 1.824 LGA V 20 V 20 2.364 0 0.025 0.273 2.890 35.455 33.506 2.227 LGA R 21 R 21 2.297 0 0.152 0.980 4.711 35.455 22.975 3.233 LGA C 22 C 22 1.908 0 0.161 0.769 2.297 50.909 48.788 2.297 LGA D 23 D 23 2.178 0 0.289 0.405 3.999 36.364 24.545 3.999 LGA E 24 E 24 0.836 0 0.104 0.205 3.727 70.000 48.283 3.727 LGA S 25 S 25 2.888 0 0.098 0.572 4.477 35.455 27.576 3.158 LGA N 26 N 26 3.501 0 0.358 0.965 7.022 18.636 9.318 7.022 LGA H 27 H 27 5.747 0 0.607 0.564 12.389 2.273 0.909 11.469 LGA C 28 C 28 2.927 0 0.166 0.745 4.078 18.636 21.818 4.078 LGA V 29 V 29 3.019 0 0.085 1.202 3.721 25.000 21.039 3.397 LGA E 30 E 30 2.617 0 0.125 0.352 3.099 25.000 26.263 2.588 LGA V 31 V 31 2.172 0 0.054 1.040 3.017 48.182 37.922 2.924 LGA R 32 R 32 0.833 0 0.097 1.034 4.528 74.091 50.909 4.528 LGA C 33 C 33 1.045 0 0.501 1.086 2.577 60.000 60.000 0.885 LGA S 34 S 34 2.798 0 0.272 0.679 5.159 17.727 17.879 3.443 LGA D 35 D 35 5.742 0 0.220 0.983 7.242 0.909 0.455 6.182 LGA T 36 T 36 3.163 0 0.122 0.272 3.966 14.545 17.403 3.095 LGA K 37 K 37 2.733 0 0.036 0.847 6.349 23.182 12.323 6.349 LGA Y 38 Y 38 2.761 0 0.111 0.244 2.761 32.727 42.727 2.348 LGA T 39 T 39 2.687 0 0.193 1.014 6.102 25.909 16.364 6.102 LGA L 40 L 40 1.187 0 0.291 0.689 4.634 52.273 36.364 3.933 LGA C 41 C 41 3.063 0 0.483 0.969 6.989 27.727 19.740 6.989 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.963 5.821 6.861 26.031 20.919 13.792 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 27 2.56 54.878 54.177 1.013 LGA_LOCAL RMSD: 2.565 Number of atoms: 27 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.288 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.963 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.975798 * X + 0.159405 * Y + -0.149696 * Z + 3.620039 Y_new = 0.200274 * X + -0.926325 * Y + 0.319081 * Z + 1.696202 Z_new = -0.087804 * X + -0.341339 * Y + -0.935830 * Z + -1.448779 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.202430 0.087917 -2.791843 [DEG: 11.5984 5.0373 -159.9608 ] ZXZ: -2.702930 2.781404 -2.889817 [DEG: -154.8665 159.3627 -165.5743 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS498_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 27 2.56 54.177 5.96 REMARK ---------------------------------------------------------- MOLECULE T0955TS498_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 CB SER 1 20.412 -9.162 -6.150 1.00 3.12 C ATOM 2 OG SER 1 20.389 -8.832 -7.529 1.00 3.12 O ATOM 4 C SER 1 20.275 -6.745 -5.235 1.00 3.12 C ATOM 5 O SER 1 19.996 -6.281 -4.123 1.00 3.12 O ATOM 8 N SER 1 21.413 -8.571 -3.960 1.00 3.12 N ATOM 10 CA SER 1 21.099 -8.063 -5.325 1.00 3.12 C ATOM 11 N GLN 2 19.893 -6.168 -6.386 1.00 3.97 N ATOM 13 CA GLN 2 19.190 -4.862 -6.489 1.00 3.97 C ATOM 14 CB GLN 2 19.499 -4.239 -7.858 1.00 3.97 C ATOM 15 CG GLN 2 20.843 -3.535 -7.924 1.00 3.97 C ATOM 16 CD GLN 2 21.120 -2.930 -9.286 1.00 3.97 C ATOM 17 OE1 GLN 2 20.791 -1.772 -9.542 1.00 3.97 O ATOM 18 NE2 GLN 2 21.729 -3.713 -10.171 1.00 3.97 N ATOM 21 C GLN 2 17.729 -4.462 -6.112 1.00 3.97 C ATOM 22 O GLN 2 17.567 -3.444 -5.425 1.00 3.97 O ATOM 23 N GLU 3 16.697 -5.221 -6.513 1.00 3.91 N ATOM 25 CA GLU 3 15.272 -4.837 -6.279 1.00 3.91 C ATOM 26 CB GLU 3 14.366 -5.490 -7.333 1.00 3.91 C ATOM 27 CG GLU 3 14.301 -4.725 -8.647 1.00 3.91 C ATOM 28 CD GLU 3 13.399 -5.392 -9.669 1.00 3.91 C ATOM 29 OE1 GLU 3 13.898 -6.230 -10.450 1.00 3.91 O ATOM 30 OE2 GLU 3 12.190 -5.076 -9.695 1.00 3.91 O ATOM 31 C GLU 3 14.482 -4.764 -4.943 1.00 3.91 C ATOM 32 O GLU 3 13.800 -3.754 -4.722 1.00 3.91 O ATOM 33 N THR 4 14.572 -5.772 -4.063 1.00 3.04 N ATOM 35 CA THR 4 13.780 -5.807 -2.800 1.00 3.04 C ATOM 36 CB THR 4 13.612 -7.265 -2.270 1.00 3.04 C ATOM 37 OG1 THR 4 14.897 -7.891 -2.167 1.00 3.04 O ATOM 39 CG2 THR 4 12.719 -8.079 -3.196 1.00 3.04 C ATOM 40 C THR 4 14.061 -4.878 -1.582 1.00 3.04 C ATOM 41 O THR 4 13.116 -4.263 -1.066 1.00 3.04 O ATOM 42 N ARG 5 15.325 -4.763 -1.147 1.00 2.05 N ATOM 44 CA ARG 5 15.718 -3.972 0.049 1.00 2.05 C ATOM 45 CB ARG 5 17.060 -4.486 0.593 1.00 2.05 C ATOM 46 CG ARG 5 17.004 -5.874 1.224 1.00 2.05 C ATOM 47 CD ARG 5 18.370 -6.304 1.735 1.00 2.05 C ATOM 48 NE ARG 5 18.337 -7.635 2.344 1.00 2.05 N ATOM 50 CZ ARG 5 19.386 -8.264 2.874 1.00 2.05 C ATOM 51 NH1 ARG 5 20.592 -7.701 2.888 1.00 2.05 N ATOM 54 NH2 ARG 5 19.228 -9.471 3.399 1.00 2.05 N ATOM 57 C ARG 5 15.695 -2.420 0.195 1.00 2.05 C ATOM 58 O ARG 5 15.109 -1.921 1.169 1.00 2.05 O ATOM 59 N LYS 6 16.324 -1.676 -0.731 1.00 1.81 N ATOM 61 CA LYS 6 16.434 -0.191 -0.667 1.00 1.81 C ATOM 62 CB LYS 6 17.684 0.284 -1.417 1.00 1.81 C ATOM 63 CG LYS 6 18.993 0.011 -0.683 1.00 1.81 C ATOM 64 CD LYS 6 20.188 0.507 -1.481 1.00 1.81 C ATOM 65 CE LYS 6 21.492 0.234 -0.749 1.00 1.81 C ATOM 66 NZ LYS 6 22.673 0.714 -1.519 1.00 1.81 N ATOM 70 C LYS 6 15.266 0.793 -0.943 1.00 1.81 C ATOM 71 O LYS 6 15.038 1.707 -0.133 1.00 1.81 O ATOM 72 N LYS 7 14.557 0.618 -2.069 1.00 1.82 N ATOM 74 CA LYS 7 13.433 1.489 -2.508 1.00 1.82 C ATOM 75 CB LYS 7 13.180 1.286 -4.008 1.00 1.82 C ATOM 76 CG LYS 7 14.246 1.898 -4.911 1.00 1.82 C ATOM 77 CD LYS 7 13.929 1.658 -6.383 1.00 1.82 C ATOM 78 CE LYS 7 14.985 2.262 -7.306 1.00 1.82 C ATOM 79 NZ LYS 7 16.308 1.571 -7.234 1.00 1.82 N ATOM 83 C LYS 7 12.096 1.416 -1.722 1.00 1.82 C ATOM 84 O LYS 7 11.427 2.445 -1.550 1.00 1.82 O ATOM 85 N CYS 8 11.736 0.211 -1.249 1.00 1.75 N ATOM 87 CA CYS 8 10.489 -0.087 -0.486 1.00 1.75 C ATOM 88 CB CYS 8 10.320 -1.614 -0.421 1.00 1.75 C ATOM 89 SG CYS 8 8.930 -2.303 0.513 1.00 1.75 S ATOM 90 C CYS 8 10.375 0.532 0.925 1.00 1.75 C ATOM 91 O CYS 8 9.306 1.032 1.297 1.00 1.75 O ATOM 92 N THR 9 11.453 0.431 1.714 1.00 1.74 N ATOM 94 CA THR 9 11.530 0.970 3.092 1.00 1.74 C ATOM 95 CB THR 9 12.777 0.426 3.844 1.00 1.74 C ATOM 96 OG1 THR 9 13.913 0.438 2.969 1.00 1.74 O ATOM 98 CG2 THR 9 12.528 -0.986 4.356 1.00 1.74 C ATOM 99 C THR 9 11.506 2.506 3.204 1.00 1.74 C ATOM 100 O THR 9 10.884 3.050 4.130 1.00 1.74 O ATOM 101 N GLU 10 12.151 3.188 2.241 1.00 1.60 N ATOM 103 CA GLU 10 12.236 4.662 2.187 1.00 1.60 C ATOM 104 CB GLU 10 13.216 5.113 1.101 1.00 1.60 C ATOM 105 CG GLU 10 14.665 5.066 1.528 1.00 1.60 C ATOM 106 CD GLU 10 15.615 5.518 0.434 1.00 1.60 C ATOM 107 OE1 GLU 10 15.918 6.728 0.368 1.00 1.60 O ATOM 108 OE2 GLU 10 16.064 4.662 -0.358 1.00 1.60 O ATOM 109 C GLU 10 10.862 5.253 1.919 1.00 1.60 C ATOM 110 O GLU 10 10.488 6.263 2.529 1.00 1.60 O ATOM 111 N MET 11 10.114 4.595 1.023 1.00 1.47 N ATOM 113 CA MET 11 8.756 5.016 0.668 1.00 1.47 C ATOM 114 CG MET 11 8.202 2.928 -0.830 1.00 1.47 C ATOM 115 SD MET 11 6.852 2.118 0.064 1.00 1.47 S ATOM 116 CE MET 11 6.178 1.084 -1.217 1.00 1.47 C ATOM 117 C MET 11 7.725 4.799 1.786 1.00 1.47 C ATOM 118 O MET 11 6.882 5.665 2.023 1.00 1.47 O ATOM 119 CB MET 11 8.294 4.428 -0.678 1.00 1.47 C ATOM 120 N LYS 12 7.866 3.672 2.500 1.00 1.57 N ATOM 122 CA LYS 12 6.994 3.267 3.623 1.00 1.57 C ATOM 123 CB LYS 12 7.488 1.916 4.172 1.00 1.57 C ATOM 124 CG LYS 12 6.677 1.271 5.300 1.00 1.57 C ATOM 125 CD LYS 12 7.289 -0.052 5.732 1.00 1.57 C ATOM 126 CE LYS 12 6.485 -0.694 6.850 1.00 1.57 C ATOM 127 NZ LYS 12 7.073 -1.991 7.284 1.00 1.57 N ATOM 131 C LYS 12 6.994 4.357 4.722 1.00 1.57 C ATOM 132 O LYS 12 5.943 4.647 5.317 1.00 1.57 O ATOM 133 N LYS 13 8.177 4.940 4.960 1.00 1.46 N ATOM 135 CA LYS 13 8.393 5.994 5.970 1.00 1.46 C ATOM 136 CB LYS 13 9.887 6.115 6.287 1.00 1.46 C ATOM 137 CG LYS 13 10.431 5.021 7.180 1.00 1.46 C ATOM 138 CD LYS 13 11.921 5.213 7.448 1.00 1.46 C ATOM 139 CE LYS 13 12.491 4.119 8.348 1.00 1.46 C ATOM 140 NZ LYS 13 12.537 2.774 7.698 1.00 1.46 N ATOM 144 C LYS 13 7.827 7.407 5.722 1.00 1.46 C ATOM 145 O LYS 13 7.120 7.950 6.586 1.00 1.46 O ATOM 146 N LYS 14 8.152 7.984 4.556 1.00 1.71 N ATOM 148 CA LYS 14 7.724 9.335 4.144 1.00 1.71 C ATOM 149 CB LYS 14 8.707 9.943 3.128 1.00 1.71 C ATOM 150 CG LYS 14 9.109 9.078 1.934 1.00 1.71 C ATOM 151 CD LYS 14 10.081 9.811 1.024 1.00 1.71 C ATOM 152 CE LYS 14 10.482 8.951 -0.164 1.00 1.71 C ATOM 153 NZ LYS 14 11.434 9.656 -1.065 1.00 1.71 N ATOM 157 C LYS 14 6.270 9.470 3.680 1.00 1.71 C ATOM 158 O LYS 14 5.619 10.510 3.869 1.00 1.71 O ATOM 159 N PHE 15 5.801 8.370 3.090 1.00 1.68 N ATOM 161 CA PHE 15 4.466 8.186 2.517 1.00 1.68 C ATOM 162 CB PHE 15 4.529 7.059 1.440 1.00 1.68 C ATOM 163 CG PHE 15 3.696 5.799 1.726 1.00 1.68 C ATOM 164 CD1 PHE 15 2.676 5.423 0.832 1.00 1.68 C ATOM 165 CD2 PHE 15 3.963 4.949 2.829 1.00 1.68 C ATOM 166 CE1 PHE 15 1.934 4.226 1.023 1.00 1.68 C ATOM 167 CE2 PHE 15 3.230 3.750 3.035 1.00 1.68 C ATOM 168 CZ PHE 15 2.211 3.388 2.127 1.00 1.68 C ATOM 169 C PHE 15 3.296 8.021 3.507 1.00 1.68 C ATOM 170 O PHE 15 2.139 8.208 3.114 1.00 1.68 O ATOM 171 N LYS 16 3.615 7.819 4.796 1.00 1.85 N ATOM 173 CA LYS 16 2.633 7.516 5.871 1.00 1.85 C ATOM 174 CB LYS 16 3.336 7.516 7.233 1.00 1.85 C ATOM 175 CG LYS 16 2.741 6.548 8.260 1.00 1.85 C ATOM 176 CD LYS 16 3.494 6.610 9.579 1.00 1.85 C ATOM 177 CE LYS 16 2.905 5.650 10.598 1.00 1.85 C ATOM 178 NZ LYS 16 3.633 5.700 11.896 1.00 1.85 N ATOM 182 C LYS 16 1.360 8.389 5.945 1.00 1.85 C ATOM 183 O LYS 16 0.369 8.005 6.589 1.00 1.85 O ATOM 184 N ASN 17 1.388 9.526 5.249 1.00 2.05 N ATOM 186 CA ASN 17 0.253 10.453 5.164 1.00 2.05 C ATOM 187 CB ASN 17 0.777 11.865 4.889 1.00 2.05 C ATOM 188 CG ASN 17 1.755 12.346 5.955 1.00 2.05 C ATOM 189 OD1 ASN 17 1.358 12.963 6.947 1.00 2.05 O ATOM 190 ND2 ASN 17 3.042 12.083 5.745 1.00 2.05 N ATOM 193 C ASN 17 -0.704 9.978 4.050 1.00 2.05 C ATOM 194 O ASN 17 -1.650 10.678 3.662 1.00 2.05 O ATOM 195 N CYS 18 -0.441 8.748 3.598 1.00 2.18 N ATOM 197 CA CYS 18 -1.160 8.035 2.541 1.00 2.18 C ATOM 198 CB CYS 18 -0.190 7.228 1.710 1.00 2.18 C ATOM 199 SG CYS 18 -0.760 6.899 0.067 1.00 2.18 S ATOM 200 C CYS 18 -2.304 7.119 2.956 1.00 2.18 C ATOM 201 O CYS 18 -2.361 6.613 4.086 1.00 2.18 O ATOM 202 N GLU 19 -3.238 6.972 2.020 1.00 3.09 N ATOM 204 CA GLU 19 -4.425 6.139 2.158 1.00 3.09 C ATOM 205 CB GLU 19 -5.633 6.915 1.636 1.00 3.09 C ATOM 206 CG GLU 19 -5.624 8.382 2.034 1.00 3.09 C ATOM 207 CD GLU 19 -6.830 9.140 1.510 1.00 3.09 C ATOM 208 OE1 GLU 19 -7.855 9.195 2.220 1.00 3.09 O ATOM 209 OE2 GLU 19 -6.751 9.686 0.388 1.00 3.09 O ATOM 210 C GLU 19 -4.225 4.841 1.355 1.00 3.09 C ATOM 211 O GLU 19 -4.201 4.879 0.122 1.00 3.09 O ATOM 212 N VAL 20 -4.029 3.715 2.055 1.00 3.84 N ATOM 214 CA VAL 20 -3.819 2.400 1.420 1.00 3.84 C ATOM 215 CB VAL 20 -2.626 1.579 2.063 1.00 3.84 C ATOM 216 CG1 VAL 20 -1.975 0.680 1.009 1.00 3.84 C ATOM 217 CG2 VAL 20 -1.586 2.498 2.706 1.00 3.84 C ATOM 218 C VAL 20 -5.110 1.560 1.412 1.00 3.84 C ATOM 219 O VAL 20 -5.632 1.183 2.473 1.00 3.84 O ATOM 220 N ARG 21 -5.625 1.328 0.199 1.00 4.52 N ATOM 222 CA ARG 21 -6.833 0.530 -0.046 1.00 4.52 C ATOM 223 CB ARG 21 -7.809 1.276 -0.968 1.00 4.52 C ATOM 224 CG ARG 21 -8.645 2.335 -0.267 1.00 4.52 C ATOM 225 CD ARG 21 -9.599 3.049 -1.224 1.00 4.52 C ATOM 226 NE ARG 21 -10.690 2.186 -1.691 1.00 4.52 N ATOM 228 CZ ARG 21 -11.657 2.557 -2.529 1.00 4.52 C ATOM 229 NH1 ARG 21 -12.590 1.683 -2.879 1.00 4.52 N ATOM 232 NH2 ARG 21 -11.705 3.791 -3.025 1.00 4.52 N ATOM 235 C ARG 21 -6.397 -0.807 -0.665 1.00 4.52 C ATOM 236 O ARG 21 -6.212 -0.909 -1.888 1.00 4.52 O ATOM 237 N CYS 22 -6.184 -1.808 0.201 1.00 4.65 N ATOM 239 CA CYS 22 -5.744 -3.139 -0.222 1.00 4.65 C ATOM 240 CB CYS 22 -4.520 -3.609 0.577 1.00 4.65 C ATOM 241 SG CYS 22 -4.783 -3.757 2.347 1.00 4.65 S ATOM 242 C CYS 22 -6.819 -4.220 -0.226 1.00 4.65 C ATOM 243 O CYS 22 -7.396 -4.561 0.817 1.00 4.65 O ATOM 244 N ASP 23 -7.112 -4.688 -1.442 1.00 5.39 N ATOM 246 CA ASP 23 -8.063 -5.764 -1.721 1.00 5.39 C ATOM 247 CB ASP 23 -9.027 -5.362 -2.853 1.00 5.39 C ATOM 248 CG ASP 23 -9.891 -4.154 -2.495 1.00 5.39 C ATOM 249 OD1 ASP 23 -11.000 -4.351 -1.950 1.00 5.39 O ATOM 250 OD2 ASP 23 -9.470 -3.010 -2.776 1.00 5.39 O ATOM 251 C ASP 23 -7.101 -6.898 -2.134 1.00 5.39 C ATOM 252 O ASP 23 -6.557 -6.903 -3.249 1.00 5.39 O ATOM 253 N GLU 24 -6.854 -7.802 -1.179 1.00 6.09 N ATOM 255 CA GLU 24 -5.913 -8.937 -1.289 1.00 6.09 C ATOM 256 CB GLU 24 -5.769 -9.627 0.080 1.00 6.09 C ATOM 257 CG GLU 24 -7.076 -9.867 0.859 1.00 6.09 C ATOM 258 CD GLU 24 -6.845 -10.549 2.193 1.00 6.09 C ATOM 259 OE1 GLU 24 -6.862 -11.798 2.236 1.00 6.09 O ATOM 260 OE2 GLU 24 -6.647 -9.837 3.200 1.00 6.09 O ATOM 261 C GLU 24 -6.027 -10.003 -2.389 1.00 6.09 C ATOM 262 O GLU 24 -5.001 -10.393 -2.959 1.00 6.09 O ATOM 263 N SER 25 -7.253 -10.434 -2.703 1.00 6.00 N ATOM 265 CA SER 25 -7.477 -11.488 -3.703 1.00 6.00 C ATOM 266 CB SER 25 -8.777 -12.210 -3.354 1.00 6.00 C ATOM 267 OG SER 25 -9.850 -11.286 -3.247 1.00 6.00 O ATOM 269 C SER 25 -7.499 -11.118 -5.198 1.00 6.00 C ATOM 270 O SER 25 -6.626 -11.572 -5.943 1.00 6.00 O ATOM 271 N ASN 26 -8.430 -10.247 -5.605 1.00 5.58 N ATOM 273 CA ASN 26 -8.580 -9.834 -7.012 1.00 5.58 C ATOM 274 CB ASN 26 -10.055 -9.518 -7.349 1.00 5.58 C ATOM 275 CG ASN 26 -10.728 -8.601 -6.335 1.00 5.58 C ATOM 276 OD1 ASN 26 -11.326 -9.065 -5.362 1.00 5.58 O ATOM 277 ND2 ASN 26 -10.646 -7.294 -6.566 1.00 5.58 N ATOM 280 C ASN 26 -7.618 -8.837 -7.676 1.00 5.58 C ATOM 281 O ASN 26 -6.544 -9.223 -8.146 1.00 5.58 O ATOM 282 N HIS 27 -7.994 -7.553 -7.640 1.00 5.15 N ATOM 284 CA HIS 27 -7.257 -6.447 -8.257 1.00 5.15 C ATOM 285 CG HIS 27 -9.330 -5.478 -9.389 1.00 5.15 C ATOM 286 CD2 HIS 27 -10.672 -5.503 -9.199 1.00 5.15 C ATOM 287 ND1 HIS 27 -9.134 -5.700 -10.737 1.00 5.15 N ATOM 289 CE1 HIS 27 -10.302 -5.851 -11.334 1.00 5.15 C ATOM 290 NE2 HIS 27 -11.251 -5.736 -10.423 1.00 5.15 N ATOM 292 C HIS 27 -5.979 -6.012 -7.533 1.00 5.15 C ATOM 293 O HIS 27 -5.487 -6.705 -6.640 1.00 5.15 O ATOM 294 CB HIS 27 -8.201 -5.244 -8.431 1.00 5.15 C ATOM 295 N CYS 28 -5.457 -4.856 -7.950 1.00 4.10 N ATOM 297 CA CYS 28 -4.258 -4.229 -7.404 1.00 4.10 C ATOM 298 CB CYS 28 -3.509 -3.510 -8.513 1.00 4.10 C ATOM 299 SG CYS 28 -4.576 -2.442 -9.475 1.00 4.10 S ATOM 300 C CYS 28 -4.711 -3.236 -6.333 1.00 4.10 C ATOM 301 O CYS 28 -5.889 -2.859 -6.295 1.00 4.10 O ATOM 302 N VAL 29 -3.749 -2.736 -5.556 1.00 4.24 N ATOM 304 CA VAL 29 -3.998 -1.815 -4.444 1.00 4.24 C ATOM 305 CB VAL 29 -3.108 -2.240 -3.185 1.00 4.24 C ATOM 306 CG1 VAL 29 -1.662 -2.590 -3.608 1.00 4.24 C ATOM 307 CG2 VAL 29 -3.102 -1.167 -2.081 1.00 4.24 C ATOM 308 C VAL 29 -3.777 -0.352 -4.889 1.00 4.24 C ATOM 309 O VAL 29 -2.779 -0.032 -5.560 1.00 4.24 O ATOM 310 N GLU 30 -4.793 0.474 -4.596 1.00 3.33 N ATOM 312 CA GLU 30 -4.808 1.906 -4.906 1.00 3.33 C ATOM 313 CB GLU 30 -6.148 2.329 -5.516 1.00 3.33 C ATOM 314 CG GLU 30 -6.031 3.323 -6.667 1.00 3.33 C ATOM 315 CD GLU 30 -7.380 3.715 -7.242 1.00 3.33 C ATOM 316 OE1 GLU 30 -7.847 3.037 -8.182 1.00 3.33 O ATOM 317 OE2 GLU 30 -7.971 4.703 -6.757 1.00 3.33 O ATOM 318 C GLU 30 -4.526 2.685 -3.618 1.00 3.33 C ATOM 319 O GLU 30 -5.297 2.654 -2.652 1.00 3.33 O ATOM 320 N VAL 31 -3.376 3.352 -3.629 1.00 2.21 N ATOM 322 CA VAL 31 -2.873 4.165 -2.529 1.00 2.21 C ATOM 323 CB VAL 31 -1.542 3.500 -1.880 1.00 2.21 C ATOM 324 CG1 VAL 31 -0.302 3.577 -2.801 1.00 2.21 C ATOM 325 CG2 VAL 31 -1.239 4.057 -0.521 1.00 2.21 C ATOM 326 C VAL 31 -2.649 5.600 -3.063 1.00 2.21 C ATOM 327 O VAL 31 -1.922 5.787 -4.056 1.00 2.21 O ATOM 328 N ARG 32 -3.377 6.575 -2.504 1.00 2.56 N ATOM 330 CA ARG 32 -3.179 7.972 -2.909 1.00 2.56 C ATOM 331 CB ARG 32 -4.400 8.611 -3.607 1.00 2.56 C ATOM 332 CG ARG 32 -5.751 8.497 -2.918 1.00 2.56 C ATOM 333 CD ARG 32 -6.844 9.174 -3.730 1.00 2.56 C ATOM 334 NE ARG 32 -8.154 9.075 -3.081 1.00 2.56 N ATOM 336 CZ ARG 32 -9.290 9.576 -3.565 1.00 2.56 C ATOM 337 NH1 ARG 32 -9.318 10.230 -4.722 1.00 2.56 N ATOM 340 NH2 ARG 32 -10.416 9.421 -2.881 1.00 2.56 N ATOM 343 C ARG 32 -2.608 8.843 -1.786 1.00 2.56 C ATOM 344 O ARG 32 -3.256 9.094 -0.762 1.00 2.56 O ATOM 345 N CYS 33 -1.354 9.240 -2.004 1.00 3.11 N ATOM 347 CA CYS 33 -0.552 10.086 -1.121 1.00 3.11 C ATOM 348 CB CYS 33 0.877 9.544 -0.966 1.00 3.11 C ATOM 349 SG CYS 33 1.830 9.329 -2.483 1.00 3.11 S ATOM 350 C CYS 33 -0.526 11.474 -1.745 1.00 3.11 C ATOM 351 O CYS 33 -0.792 11.636 -2.944 1.00 3.11 O ATOM 352 N SER 34 -0.186 12.460 -0.923 1.00 3.83 N ATOM 354 CA SER 34 -0.130 13.861 -1.315 1.00 3.83 C ATOM 355 CB SER 34 -0.167 14.697 -0.049 1.00 3.83 C ATOM 356 OG SER 34 0.822 14.226 0.843 1.00 3.83 O ATOM 358 C SER 34 1.067 14.302 -2.169 1.00 3.83 C ATOM 359 O SER 34 1.004 15.362 -2.795 1.00 3.83 O ATOM 360 N ASP 35 2.109 13.465 -2.261 1.00 4.30 N ATOM 362 CA ASP 35 3.313 13.847 -3.008 1.00 4.30 C ATOM 363 CB ASP 35 4.551 13.682 -2.097 1.00 4.30 C ATOM 364 CG ASP 35 5.853 14.135 -2.749 1.00 4.30 C ATOM 365 OD1 ASP 35 6.570 13.278 -3.306 1.00 4.30 O ATOM 366 OD2 ASP 35 6.170 15.344 -2.687 1.00 4.30 O ATOM 367 C ASP 35 3.570 13.266 -4.407 1.00 4.30 C ATOM 368 O ASP 35 3.372 13.974 -5.398 1.00 4.30 O ATOM 369 N THR 36 3.977 11.993 -4.488 1.00 4.13 N ATOM 371 CA THR 36 4.328 11.351 -5.761 1.00 4.13 C ATOM 372 CB THR 36 5.896 11.205 -5.855 1.00 4.13 C ATOM 373 OG1 THR 36 6.496 12.506 -5.870 1.00 4.13 O ATOM 375 CG2 THR 36 6.327 10.447 -7.089 1.00 4.13 C ATOM 376 C THR 36 3.629 10.002 -6.001 1.00 4.13 C ATOM 377 O THR 36 4.070 8.981 -5.469 1.00 4.13 O ATOM 378 N LYS 37 2.731 9.965 -6.992 1.00 3.80 N ATOM 380 CA LYS 37 1.982 8.741 -7.311 1.00 3.80 C ATOM 381 CB LYS 37 0.678 9.041 -8.084 1.00 3.80 C ATOM 382 CG LYS 37 0.812 9.858 -9.362 1.00 3.80 C ATOM 383 CD LYS 37 -0.545 10.080 -10.021 1.00 3.80 C ATOM 384 CE LYS 37 -0.434 10.898 -11.306 1.00 3.80 C ATOM 385 NZ LYS 37 0.253 10.173 -12.418 1.00 3.80 N ATOM 389 C LYS 37 2.856 7.713 -8.048 1.00 3.80 C ATOM 390 O LYS 37 3.476 8.025 -9.066 1.00 3.80 O ATOM 391 N TYR 38 3.048 6.574 -7.380 1.00 3.40 N ATOM 393 CA TYR 38 3.837 5.443 -7.874 1.00 3.40 C ATOM 394 CB TYR 38 5.111 5.262 -7.009 1.00 3.40 C ATOM 395 CG TYR 38 4.917 4.985 -5.512 1.00 3.40 C ATOM 396 CD1 TYR 38 4.983 3.666 -5.000 1.00 3.40 C ATOM 397 CE1 TYR 38 4.849 3.406 -3.610 1.00 3.40 C ATOM 398 CD2 TYR 38 4.713 6.043 -4.589 1.00 3.40 C ATOM 399 CE2 TYR 38 4.580 5.790 -3.195 1.00 3.40 C ATOM 400 CZ TYR 38 4.649 4.471 -2.720 1.00 3.40 C ATOM 401 OH TYR 38 4.524 4.217 -1.373 1.00 3.40 O ATOM 403 C TYR 38 2.950 4.209 -7.768 1.00 3.40 C ATOM 404 O TYR 38 1.835 4.305 -7.277 1.00 3.40 O ATOM 405 N THR 39 3.455 3.058 -8.212 1.00 2.16 N ATOM 407 CA THR 39 2.723 1.793 -8.135 1.00 2.16 C ATOM 408 CB THR 39 2.496 1.185 -9.548 1.00 2.16 C ATOM 409 OG1 THR 39 3.738 1.129 -10.264 1.00 2.16 O ATOM 411 CG2 THR 39 1.504 2.035 -10.324 1.00 2.16 C ATOM 412 C THR 39 3.532 0.842 -7.234 1.00 2.16 C ATOM 413 O THR 39 4.763 0.944 -7.188 1.00 2.16 O ATOM 414 N LEU 40 2.836 -0.008 -6.466 1.00 3.05 N ATOM 416 CA LEU 40 3.459 -0.983 -5.549 1.00 3.05 C ATOM 417 CB LEU 40 2.608 -1.131 -4.271 1.00 3.05 C ATOM 418 CG LEU 40 3.124 -1.749 -2.956 1.00 3.05 C ATOM 419 CD1 LEU 40 3.071 -0.718 -1.830 1.00 3.05 C ATOM 420 CD2 LEU 40 2.279 -2.966 -2.580 1.00 3.05 C ATOM 421 C LEU 40 3.606 -2.334 -6.271 1.00 3.05 C ATOM 422 O LEU 40 3.257 -2.431 -7.444 1.00 3.05 O ATOM 423 N CYS 41 4.206 -3.317 -5.587 1.00 4.56 N ATOM 425 CA CYS 41 4.425 -4.676 -6.100 1.00 4.56 C ATOM 426 CB CYS 41 5.907 -4.865 -6.427 1.00 4.56 C ATOM 427 SG CYS 41 6.507 -3.561 -7.517 1.00 4.56 S ATOM 428 C CYS 41 3.962 -5.703 -5.072 1.00 4.56 C ATOM 429 O CYS 41 3.900 -5.334 -3.881 1.00 4.56 O ATOM 430 OXT CYS 41 3.645 -6.846 -5.467 1.00 4.56 O TER END