####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS498_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 6 - 41 4.74 6.70 LCS_AVERAGE: 83.64 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 15 - 34 1.94 9.19 LCS_AVERAGE: 42.42 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 5 - 15 0.92 9.65 LONGEST_CONTINUOUS_SEGMENT: 11 6 - 16 0.82 9.01 LONGEST_CONTINUOUS_SEGMENT: 11 7 - 17 0.98 8.42 LCS_AVERAGE: 19.75 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 8 22 0 3 7 13 17 17 19 21 23 25 25 26 28 30 31 32 33 35 37 38 LCS_GDT Q 2 Q 2 3 8 22 0 3 4 5 8 16 18 21 23 25 25 26 28 30 31 32 33 35 37 38 LCS_GDT E 3 E 3 3 16 22 1 3 4 7 17 18 19 21 23 25 25 27 31 33 33 35 37 37 38 38 LCS_GDT T 4 T 4 3 16 22 2 3 7 11 13 17 19 21 23 25 25 27 28 30 32 35 37 37 38 38 LCS_GDT R 5 R 5 11 16 22 2 3 9 12 14 17 19 21 23 25 25 26 28 30 31 32 35 37 38 38 LCS_GDT K 6 K 6 11 16 36 3 10 11 13 17 17 19 21 23 25 25 27 28 31 33 35 37 37 38 38 LCS_GDT K 7 K 7 11 16 36 4 10 11 14 17 18 19 21 23 25 25 28 31 33 34 35 37 37 38 38 LCS_GDT C 8 C 8 11 16 36 7 10 11 14 17 18 19 21 23 25 26 30 31 33 34 35 37 37 38 38 LCS_GDT T 9 T 9 11 16 36 7 10 11 14 17 18 19 21 23 26 29 30 31 33 34 35 37 37 38 38 LCS_GDT E 10 E 10 11 16 36 7 10 11 14 17 18 19 21 23 26 29 30 31 33 34 35 37 37 38 38 LCS_GDT M 11 M 11 11 16 36 7 10 11 14 17 18 19 22 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT K 12 K 12 11 16 36 7 10 11 14 17 18 21 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT K 13 K 13 11 16 36 7 10 11 14 17 18 22 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT K 14 K 14 11 16 36 6 10 11 14 17 18 21 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT F 15 F 15 11 20 36 7 10 11 17 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT K 16 K 16 11 20 36 4 8 13 17 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT N 17 N 17 11 20 36 4 10 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT C 18 C 18 10 20 36 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT E 19 E 19 8 20 36 6 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT V 20 V 20 8 20 36 4 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT R 21 R 21 8 20 36 4 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT C 22 C 22 8 20 36 4 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT D 23 D 23 8 20 36 5 11 14 18 21 24 26 26 28 29 30 31 31 32 34 35 37 37 38 38 LCS_GDT E 24 E 24 8 20 36 3 6 14 16 21 24 26 26 27 29 30 31 31 32 33 34 35 36 37 38 LCS_GDT S 25 S 25 4 20 36 4 7 13 17 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT N 26 N 26 4 20 36 3 4 7 9 11 16 21 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT H 27 H 27 7 20 36 4 9 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT C 28 C 28 8 20 36 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT V 29 V 29 8 20 36 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT E 30 E 30 8 20 36 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT V 31 V 31 8 20 36 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT R 32 R 32 8 20 36 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT C 33 C 33 8 20 36 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT S 34 S 34 8 20 36 3 8 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT D 35 D 35 8 15 36 3 7 8 15 20 22 26 26 27 27 30 31 31 32 34 35 37 37 38 38 LCS_GDT T 36 T 36 7 15 36 4 5 12 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT K 37 K 37 7 15 36 4 5 10 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT Y 38 Y 38 7 15 36 4 7 11 15 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT T 39 T 39 7 15 36 4 7 11 15 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT L 40 L 40 6 15 36 3 7 12 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_GDT C 41 C 41 6 15 36 3 7 9 13 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 LCS_AVERAGE LCS_A: 48.60 ( 19.75 42.42 83.64 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 11 14 18 21 24 26 26 28 29 30 31 31 33 34 35 37 37 38 38 GDT PERCENT_AT 17.07 26.83 34.15 43.90 51.22 58.54 63.41 63.41 68.29 70.73 73.17 75.61 75.61 80.49 82.93 85.37 90.24 90.24 92.68 92.68 GDT RMS_LOCAL 0.28 0.47 0.83 1.36 1.67 1.88 2.09 2.09 2.78 2.84 2.95 3.14 3.14 4.28 4.22 4.49 4.95 4.95 5.20 5.13 GDT RMS_ALL_AT 9.40 9.75 9.92 9.97 9.66 9.44 9.51 9.51 8.22 8.45 8.56 8.32 8.32 6.35 6.83 6.52 6.22 6.22 6.12 6.34 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 24 E 24 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 25.736 0 0.011 0.045 26.590 0.000 0.000 26.590 LGA Q 2 Q 2 24.727 0 0.300 0.743 31.081 0.000 0.000 31.081 LGA E 3 E 3 17.077 0 0.168 1.011 19.792 0.000 0.000 15.880 LGA T 4 T 4 16.139 0 0.112 1.218 19.017 0.000 0.000 19.017 LGA R 5 R 5 20.137 0 0.150 1.156 32.629 0.000 0.000 32.629 LGA K 6 K 6 19.333 0 0.123 1.024 20.672 0.000 0.000 20.672 LGA K 7 K 7 14.674 0 0.077 1.035 16.469 0.000 0.000 9.407 LGA C 8 C 8 12.636 0 0.077 0.084 13.653 0.000 0.000 13.018 LGA T 9 T 9 13.347 0 0.057 0.865 17.436 0.000 0.000 17.436 LGA E 10 E 10 12.590 0 0.025 0.766 14.884 0.000 0.000 14.610 LGA M 11 M 11 8.605 0 0.099 1.353 10.229 0.000 3.636 3.341 LGA K 12 K 12 7.382 0 0.020 0.858 10.530 0.000 0.000 10.163 LGA K 13 K 13 7.771 0 0.047 0.591 14.857 0.000 0.000 14.857 LGA K 14 K 14 7.174 0 0.033 1.068 11.995 0.000 0.000 11.995 LGA F 15 F 15 3.071 0 0.393 1.088 5.295 21.364 20.496 5.295 LGA K 16 K 16 2.458 0 0.050 0.959 5.242 45.455 27.475 5.242 LGA N 17 N 17 0.949 0 0.179 0.232 2.363 77.727 64.545 1.364 LGA C 18 C 18 1.070 0 0.061 0.725 3.856 73.636 61.818 3.856 LGA E 19 E 19 1.532 0 0.148 0.959 3.105 61.818 47.071 3.005 LGA V 20 V 20 1.527 0 0.041 0.232 1.757 50.909 52.987 1.109 LGA R 21 R 21 1.284 0 0.149 1.213 5.349 65.455 40.661 2.683 LGA C 22 C 22 1.025 0 0.155 0.584 4.137 58.636 48.485 4.137 LGA D 23 D 23 1.447 0 0.054 0.161 2.543 58.182 46.818 2.543 LGA E 24 E 24 2.960 0 0.100 0.879 4.414 25.909 19.596 4.414 LGA S 25 S 25 2.933 0 0.343 0.328 3.811 21.818 22.121 2.869 LGA N 26 N 26 6.061 0 0.172 0.951 10.420 1.818 0.909 8.744 LGA H 27 H 27 0.538 0 0.226 1.110 6.279 59.091 37.273 4.291 LGA C 28 C 28 2.342 0 0.128 0.769 4.108 45.000 33.939 4.108 LGA V 29 V 29 2.180 0 0.047 1.136 3.215 35.455 32.208 3.215 LGA E 30 E 30 2.286 0 0.139 0.408 3.078 35.455 32.323 2.414 LGA V 31 V 31 1.879 0 0.040 1.023 2.839 54.545 45.974 2.839 LGA R 32 R 32 1.356 0 0.087 1.242 6.142 61.818 49.256 6.142 LGA C 33 C 33 0.937 0 0.509 1.116 2.647 64.091 60.000 2.042 LGA S 34 S 34 1.526 0 0.274 0.686 3.348 43.182 43.636 2.121 LGA D 35 D 35 3.560 0 0.220 0.975 4.872 23.182 19.773 3.295 LGA T 36 T 36 1.389 0 0.134 0.266 3.161 46.364 43.117 1.883 LGA K 37 K 37 1.806 0 0.044 1.078 6.523 44.545 27.273 6.523 LGA Y 38 Y 38 2.322 0 0.103 0.158 2.419 38.182 45.606 1.673 LGA T 39 T 39 2.644 0 0.198 1.066 5.695 27.727 18.701 5.695 LGA L 40 L 40 1.581 0 0.270 1.150 3.792 39.545 45.909 3.792 LGA C 41 C 41 3.431 0 0.486 1.015 6.531 18.636 14.545 6.531 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 6.049 5.916 6.865 29.257 24.540 13.969 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 26 2.09 54.878 54.346 1.189 LGA_LOCAL RMSD: 2.087 Number of atoms: 26 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.509 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.049 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.967581 * X + 0.213847 * Y + 0.134377 * Z + 4.145544 Y_new = -0.252160 * X + -0.787940 * Y + -0.561752 * Z + 2.655447 Z_new = -0.014248 * X + -0.577425 * Y + 0.816320 * Z + -3.030154 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.886654 0.014248 -0.615643 [DEG: -165.3931 0.8164 -35.2737 ] ZXZ: 0.234799 0.615786 -3.116923 [DEG: 13.4530 35.2820 -178.5865 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS498_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 26 2.09 54.346 6.05 REMARK ---------------------------------------------------------- MOLECULE T0955TS498_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 CB SER 1 21.614 -6.777 -8.455 1.00 2.97 C ATOM 2 OG SER 1 22.549 -7.809 -8.718 1.00 2.97 O ATOM 4 C SER 1 20.924 -4.371 -9.023 1.00 2.97 C ATOM 5 O SER 1 21.007 -3.707 -7.980 1.00 2.97 O ATOM 8 N SER 1 23.307 -5.062 -8.991 1.00 2.97 N ATOM 10 CA SER 1 21.923 -5.529 -9.290 1.00 2.97 C ATOM 11 N GLN 2 20.009 -4.142 -9.977 1.00 4.00 N ATOM 13 CA GLN 2 19.021 -3.032 -9.974 1.00 4.00 C ATOM 14 CB GLN 2 18.716 -2.625 -11.433 1.00 4.00 C ATOM 15 CG GLN 2 18.086 -3.708 -12.324 1.00 4.00 C ATOM 16 CD GLN 2 17.823 -3.220 -13.736 1.00 4.00 C ATOM 17 OE1 GLN 2 18.678 -3.338 -14.614 1.00 4.00 O ATOM 18 NE2 GLN 2 16.635 -2.669 -13.963 1.00 4.00 N ATOM 21 C GLN 2 17.716 -2.819 -9.137 1.00 4.00 C ATOM 22 O GLN 2 17.558 -1.737 -8.558 1.00 4.00 O ATOM 23 N GLU 3 16.820 -3.816 -9.054 1.00 4.13 N ATOM 25 CA GLU 3 15.485 -3.670 -8.401 1.00 4.13 C ATOM 26 CB GLU 3 14.501 -4.732 -8.952 1.00 4.13 C ATOM 27 CG GLU 3 14.897 -6.206 -8.768 1.00 4.13 C ATOM 28 CD GLU 3 13.870 -7.164 -9.341 1.00 4.13 C ATOM 29 OE1 GLU 3 12.946 -7.560 -8.601 1.00 4.13 O ATOM 30 OE2 GLU 3 13.988 -7.522 -10.533 1.00 4.13 O ATOM 31 C GLU 3 15.111 -3.369 -6.917 1.00 4.13 C ATOM 32 O GLU 3 14.267 -2.491 -6.696 1.00 4.13 O ATOM 33 N THR 4 15.716 -4.040 -5.925 1.00 3.21 N ATOM 35 CA THR 4 15.326 -3.858 -4.498 1.00 3.21 C ATOM 36 CB THR 4 15.640 -5.133 -3.655 1.00 3.21 C ATOM 37 OG1 THR 4 17.006 -5.520 -3.854 1.00 3.21 O ATOM 39 CG2 THR 4 14.720 -6.281 -4.047 1.00 3.21 C ATOM 40 C THR 4 15.653 -2.617 -3.615 1.00 3.21 C ATOM 41 O THR 4 14.724 -2.063 -3.007 1.00 3.21 O ATOM 42 N ARG 5 16.917 -2.171 -3.554 1.00 2.01 N ATOM 44 CA ARG 5 17.329 -1.049 -2.672 1.00 2.01 C ATOM 45 CB ARG 5 18.788 -1.244 -2.195 1.00 2.01 C ATOM 46 CG ARG 5 19.890 -1.210 -3.263 1.00 2.01 C ATOM 47 CD ARG 5 21.281 -1.415 -2.665 1.00 2.01 C ATOM 48 NE ARG 5 21.724 -0.277 -1.853 1.00 2.01 N ATOM 50 CZ ARG 5 22.896 -0.196 -1.219 1.00 2.01 C ATOM 51 NH1 ARG 5 23.182 0.889 -0.512 1.00 2.01 N ATOM 54 NH2 ARG 5 23.783 -1.184 -1.283 1.00 2.01 N ATOM 57 C ARG 5 17.033 0.480 -2.801 1.00 2.01 C ATOM 58 O ARG 5 16.545 1.072 -1.826 1.00 2.01 O ATOM 59 N LYS 6 17.323 1.107 -3.955 1.00 1.73 N ATOM 61 CA LYS 6 17.156 2.578 -4.131 1.00 1.73 C ATOM 62 CB LYS 6 18.166 3.125 -5.161 1.00 1.73 C ATOM 63 CG LYS 6 18.051 2.592 -6.590 1.00 1.73 C ATOM 64 CD LYS 6 19.102 3.211 -7.497 1.00 1.73 C ATOM 65 CE LYS 6 18.987 2.681 -8.917 1.00 1.73 C ATOM 66 NZ LYS 6 20.010 3.280 -9.818 1.00 1.73 N ATOM 70 C LYS 6 15.801 3.328 -4.274 1.00 1.73 C ATOM 71 O LYS 6 15.577 4.307 -3.550 1.00 1.73 O ATOM 72 N LYS 7 14.929 2.887 -5.196 1.00 1.77 N ATOM 74 CA LYS 7 13.612 3.524 -5.465 1.00 1.77 C ATOM 75 CB LYS 7 13.135 3.207 -6.903 1.00 1.77 C ATOM 76 CG LYS 7 13.150 1.741 -7.338 1.00 1.77 C ATOM 77 CD LYS 7 12.655 1.584 -8.772 1.00 1.77 C ATOM 78 CE LYS 7 12.663 0.126 -9.229 1.00 1.77 C ATOM 79 NZ LYS 7 11.648 -0.723 -8.534 1.00 1.77 N ATOM 83 C LYS 7 12.464 3.367 -4.426 1.00 1.77 C ATOM 84 O LYS 7 11.686 4.309 -4.220 1.00 1.77 O ATOM 85 N CYS 8 12.382 2.188 -3.787 1.00 1.64 N ATOM 87 CA CYS 8 11.354 1.815 -2.773 1.00 1.64 C ATOM 88 CB CYS 8 11.425 0.294 -2.555 1.00 1.64 C ATOM 89 SG CYS 8 10.302 -0.462 -1.351 1.00 1.64 S ATOM 90 C CYS 8 11.400 2.552 -1.414 1.00 1.64 C ATOM 91 O CYS 8 10.355 2.975 -0.906 1.00 1.64 O ATOM 92 N THR 9 12.592 2.623 -0.806 1.00 1.63 N ATOM 94 CA THR 9 12.822 3.296 0.493 1.00 1.63 C ATOM 95 CB THR 9 14.216 2.933 1.079 1.00 1.63 C ATOM 96 OG1 THR 9 15.201 2.957 0.037 1.00 1.63 O ATOM 98 CG2 THR 9 14.186 1.559 1.739 1.00 1.63 C ATOM 99 C THR 9 12.662 4.829 0.483 1.00 1.63 C ATOM 100 O THR 9 12.139 5.405 1.450 1.00 1.63 O ATOM 101 N GLU 10 13.081 5.467 -0.624 1.00 1.41 N ATOM 103 CA GLU 10 13.014 6.934 -0.816 1.00 1.41 C ATOM 104 CB GLU 10 13.751 7.353 -2.092 1.00 1.41 C ATOM 105 CG GLU 10 15.259 7.378 -1.960 1.00 1.41 C ATOM 106 CD GLU 10 15.953 7.799 -3.243 1.00 1.41 C ATOM 107 OE1 GLU 10 16.182 9.013 -3.427 1.00 1.41 O ATOM 108 OE2 GLU 10 16.275 6.915 -4.064 1.00 1.41 O ATOM 109 C GLU 10 11.563 7.370 -0.904 1.00 1.41 C ATOM 110 O GLU 10 11.191 8.421 -0.363 1.00 1.41 O ATOM 111 N MET 11 10.755 6.540 -1.576 1.00 1.25 N ATOM 113 CA MET 11 9.325 6.797 -1.734 1.00 1.25 C ATOM 114 CG MET 11 8.624 4.497 -2.822 1.00 1.25 C ATOM 115 SD MET 11 7.390 3.829 -1.676 1.00 1.25 S ATOM 116 CE MET 11 6.654 2.544 -2.678 1.00 1.25 C ATOM 117 C MET 11 8.537 6.637 -0.423 1.00 1.25 C ATOM 118 O MET 11 7.743 7.517 -0.081 1.00 1.25 O ATOM 119 CB MET 11 8.713 6.009 -2.910 1.00 1.25 C ATOM 120 N LYS 12 8.870 5.581 0.342 1.00 1.38 N ATOM 122 CA LYS 12 8.246 5.230 1.640 1.00 1.38 C ATOM 123 CB LYS 12 8.911 3.952 2.195 1.00 1.38 C ATOM 124 CG LYS 12 8.429 3.451 3.563 1.00 1.38 C ATOM 125 CD LYS 12 9.171 2.186 3.983 1.00 1.38 C ATOM 126 CE LYS 12 8.707 1.669 5.343 1.00 1.38 C ATOM 127 NZ LYS 12 7.313 1.133 5.334 1.00 1.38 N ATOM 131 C LYS 12 8.351 6.385 2.664 1.00 1.38 C ATOM 132 O LYS 12 7.423 6.596 3.462 1.00 1.38 O ATOM 133 N LYS 13 9.474 7.117 2.614 1.00 1.33 N ATOM 135 CA LYS 13 9.752 8.250 3.521 1.00 1.33 C ATOM 136 CB LYS 13 11.229 8.646 3.445 1.00 1.33 C ATOM 137 CG LYS 13 12.168 7.712 4.182 1.00 1.33 C ATOM 138 CD LYS 13 13.613 8.170 4.062 1.00 1.33 C ATOM 139 CE LYS 13 14.552 7.232 4.802 1.00 1.33 C ATOM 140 NZ LYS 13 15.972 7.668 4.693 1.00 1.33 N ATOM 144 C LYS 13 8.886 9.507 3.331 1.00 1.33 C ATOM 145 O LYS 13 8.320 10.027 4.305 1.00 1.33 O ATOM 146 N LYS 14 8.806 9.983 2.081 1.00 1.56 N ATOM 148 CA LYS 14 8.021 11.164 1.675 1.00 1.56 C ATOM 149 CB LYS 14 8.549 11.773 0.363 1.00 1.56 C ATOM 150 CG LYS 14 9.035 10.813 -0.722 1.00 1.56 C ATOM 151 CD LYS 14 9.525 11.569 -1.952 1.00 1.56 C ATOM 152 CE LYS 14 10.015 10.628 -3.050 1.00 1.56 C ATOM 153 NZ LYS 14 8.924 9.828 -3.683 1.00 1.56 N ATOM 157 C LYS 14 6.511 10.870 1.632 1.00 1.56 C ATOM 158 O LYS 14 5.664 11.754 1.839 1.00 1.56 O ATOM 159 N PHE 15 6.243 9.590 1.371 1.00 1.47 N ATOM 161 CA PHE 15 4.930 8.945 1.227 1.00 1.47 C ATOM 162 CB PHE 15 5.158 7.557 0.611 1.00 1.47 C ATOM 163 CG PHE 15 4.172 7.165 -0.461 1.00 1.47 C ATOM 164 CD1 PHE 15 4.000 7.938 -1.633 1.00 1.47 C ATOM 165 CD2 PHE 15 3.424 5.980 -0.321 1.00 1.47 C ATOM 166 CE1 PHE 15 3.100 7.534 -2.640 1.00 1.47 C ATOM 167 CE2 PHE 15 2.523 5.567 -1.326 1.00 1.47 C ATOM 168 CZ PHE 15 2.359 6.348 -2.491 1.00 1.47 C ATOM 169 C PHE 15 4.014 8.774 2.451 1.00 1.47 C ATOM 170 O PHE 15 2.798 8.622 2.275 1.00 1.47 O ATOM 171 N LYS 16 4.557 8.922 3.666 1.00 1.69 N ATOM 173 CA LYS 16 3.809 8.672 4.924 1.00 1.69 C ATOM 174 CB LYS 16 4.685 9.010 6.141 1.00 1.69 C ATOM 175 CG LYS 16 5.165 10.463 6.241 1.00 1.69 C ATOM 176 CD LYS 16 6.019 10.679 7.480 1.00 1.69 C ATOM 177 CE LYS 16 6.495 12.119 7.578 1.00 1.69 C ATOM 178 NZ LYS 16 7.333 12.345 8.787 1.00 1.69 N ATOM 182 C LYS 16 2.415 9.320 5.091 1.00 1.69 C ATOM 183 O LYS 16 1.611 8.890 5.933 1.00 1.69 O ATOM 184 N ASN 17 2.145 10.318 4.247 1.00 1.95 N ATOM 186 CA ASN 17 0.878 11.057 4.222 1.00 1.95 C ATOM 187 CB ASN 17 1.143 12.485 3.734 1.00 1.95 C ATOM 188 CG ASN 17 2.203 13.203 4.562 1.00 1.95 C ATOM 189 OD1 ASN 17 1.889 13.871 5.549 1.00 1.95 O ATOM 190 ND2 ASN 17 3.462 13.081 4.150 1.00 1.95 N ATOM 193 C ASN 17 -0.142 10.343 3.320 1.00 1.95 C ATOM 194 O ASN 17 -1.233 10.861 3.039 1.00 1.95 O ATOM 195 N CYS 18 0.235 9.125 2.922 1.00 2.13 N ATOM 197 CA CYS 18 -0.533 8.242 2.047 1.00 2.13 C ATOM 198 CB CYS 18 0.397 7.520 1.092 1.00 2.13 C ATOM 199 SG CYS 18 -0.401 6.997 -0.396 1.00 2.13 S ATOM 200 C CYS 18 -1.457 7.222 2.709 1.00 2.13 C ATOM 201 O CYS 18 -1.247 6.796 3.853 1.00 2.13 O ATOM 202 N GLU 19 -2.511 6.884 1.967 1.00 2.98 N ATOM 204 CA GLU 19 -3.535 5.923 2.358 1.00 2.98 C ATOM 205 CB GLU 19 -4.915 6.464 1.968 1.00 2.98 C ATOM 206 CG GLU 19 -5.039 7.978 2.038 1.00 2.98 C ATOM 207 CD GLU 19 -6.419 8.471 1.643 1.00 2.98 C ATOM 208 OE1 GLU 19 -6.636 8.742 0.443 1.00 2.98 O ATOM 209 OE2 GLU 19 -7.287 8.592 2.534 1.00 2.98 O ATOM 210 C GLU 19 -3.253 4.611 1.604 1.00 2.98 C ATOM 211 O GLU 19 -3.389 4.571 0.379 1.00 2.98 O ATOM 212 N VAL 20 -2.812 3.570 2.323 1.00 3.73 N ATOM 214 CA VAL 20 -2.498 2.259 1.718 1.00 3.73 C ATOM 215 CB VAL 20 -1.141 1.638 2.252 1.00 3.73 C ATOM 216 CG1 VAL 20 -0.520 0.728 1.196 1.00 3.73 C ATOM 217 CG2 VAL 20 -0.146 2.729 2.660 1.00 3.73 C ATOM 218 C VAL 20 -3.668 1.268 1.871 1.00 3.73 C ATOM 219 O VAL 20 -3.957 0.790 2.978 1.00 3.73 O ATOM 220 N ARG 21 -4.350 1.024 0.745 1.00 4.50 N ATOM 222 CA ARG 21 -5.490 0.101 0.653 1.00 4.50 C ATOM 223 CB ARG 21 -6.624 0.704 -0.189 1.00 4.50 C ATOM 224 CG ARG 21 -7.542 1.642 0.567 1.00 4.50 C ATOM 225 CD ARG 21 -8.649 2.210 -0.320 1.00 4.50 C ATOM 226 NE ARG 21 -8.149 3.159 -1.321 1.00 4.50 N ATOM 228 CZ ARG 21 -8.901 3.798 -2.218 1.00 4.50 C ATOM 229 NH1 ARG 21 -8.329 4.634 -3.073 1.00 4.50 N ATOM 232 NH2 ARG 21 -10.217 3.612 -2.270 1.00 4.50 N ATOM 235 C ARG 21 -5.065 -1.257 0.072 1.00 4.50 C ATOM 236 O ARG 21 -4.959 -1.414 -1.155 1.00 4.50 O ATOM 237 N CYS 22 -4.776 -2.212 0.965 1.00 4.60 N ATOM 239 CA CYS 22 -4.378 -3.575 0.587 1.00 4.60 C ATOM 240 CB CYS 22 -3.311 -4.121 1.542 1.00 4.60 C ATOM 241 SG CYS 22 -1.789 -4.635 0.722 1.00 4.60 S ATOM 242 C CYS 22 -5.641 -4.457 0.578 1.00 4.60 C ATOM 243 O CYS 22 -6.240 -4.717 1.632 1.00 4.60 O ATOM 244 N ASP 23 -6.057 -4.846 -0.634 1.00 5.80 N ATOM 246 CA ASP 23 -7.251 -5.667 -0.904 1.00 5.80 C ATOM 247 CB ASP 23 -7.539 -5.712 -2.417 1.00 5.80 C ATOM 248 CG ASP 23 -8.372 -4.533 -2.899 1.00 5.80 C ATOM 249 OD1 ASP 23 -7.784 -3.502 -3.289 1.00 5.80 O ATOM 250 OD2 ASP 23 -9.619 -4.643 -2.907 1.00 5.80 O ATOM 251 C ASP 23 -7.230 -7.093 -0.335 1.00 5.80 C ATOM 252 O ASP 23 -6.257 -7.498 0.314 1.00 5.80 O ATOM 253 N GLU 24 -8.316 -7.825 -0.600 1.00 6.21 N ATOM 255 CA GLU 24 -8.555 -9.199 -0.144 1.00 6.21 C ATOM 256 CB GLU 24 -10.064 -9.442 -0.073 1.00 6.21 C ATOM 257 CG GLU 24 -10.836 -8.333 0.648 1.00 6.21 C ATOM 258 CD GLU 24 -12.329 -8.599 0.704 1.00 6.21 C ATOM 259 OE1 GLU 24 -13.046 -8.174 -0.227 1.00 6.21 O ATOM 260 OE2 GLU 24 -12.785 -9.231 1.680 1.00 6.21 O ATOM 261 C GLU 24 -7.866 -10.298 -0.971 1.00 6.21 C ATOM 262 O GLU 24 -7.229 -11.185 -0.394 1.00 6.21 O ATOM 263 N SER 25 -7.942 -10.186 -2.307 1.00 5.53 N ATOM 265 CA SER 25 -7.344 -11.131 -3.276 1.00 5.53 C ATOM 266 CB SER 25 -8.097 -11.048 -4.611 1.00 5.53 C ATOM 267 OG SER 25 -9.500 -11.048 -4.400 1.00 5.53 O ATOM 269 C SER 25 -5.823 -10.870 -3.463 1.00 5.53 C ATOM 270 O SER 25 -5.223 -11.216 -4.491 1.00 5.53 O ATOM 271 N ASN 26 -5.230 -10.275 -2.415 1.00 6.26 N ATOM 273 CA ASN 26 -3.802 -9.905 -2.238 1.00 6.26 C ATOM 274 CB ASN 26 -3.039 -11.040 -1.501 1.00 6.26 C ATOM 275 CG ASN 26 -3.015 -12.357 -2.278 1.00 6.26 C ATOM 276 OD1 ASN 26 -3.896 -13.204 -2.118 1.00 6.26 O ATOM 277 ND2 ASN 26 -1.994 -12.536 -3.113 1.00 6.26 N ATOM 280 C ASN 26 -2.888 -9.258 -3.321 1.00 6.26 C ATOM 281 O ASN 26 -1.687 -9.082 -3.056 1.00 6.26 O ATOM 282 N HIS 27 -3.410 -8.889 -4.503 1.00 4.94 N ATOM 284 CA HIS 27 -2.522 -8.293 -5.527 1.00 4.94 C ATOM 285 CG HIS 27 -3.528 -9.730 -7.396 1.00 4.94 C ATOM 286 CD2 HIS 27 -4.176 -10.919 -7.459 1.00 4.94 C ATOM 287 ND1 HIS 27 -4.236 -8.868 -8.207 1.00 4.94 N ATOM 289 CE1 HIS 27 -5.265 -9.505 -8.736 1.00 4.94 C ATOM 290 NE2 HIS 27 -5.251 -10.751 -8.298 1.00 4.94 N ATOM 292 C HIS 27 -2.783 -6.911 -6.171 1.00 4.94 C ATOM 293 O HIS 27 -1.920 -6.433 -6.920 1.00 4.94 O ATOM 294 CB HIS 27 -2.284 -9.318 -6.659 1.00 4.94 C ATOM 295 N CYS 28 -3.873 -6.216 -5.826 1.00 4.12 N ATOM 297 CA CYS 28 -4.102 -4.877 -6.401 1.00 4.12 C ATOM 298 CB CYS 28 -5.298 -4.858 -7.360 1.00 4.12 C ATOM 299 SG CYS 28 -5.409 -3.354 -8.333 1.00 4.12 S ATOM 300 C CYS 28 -4.302 -3.886 -5.263 1.00 4.12 C ATOM 301 O CYS 28 -5.402 -3.756 -4.722 1.00 4.12 O ATOM 302 N VAL 29 -3.303 -3.021 -5.099 1.00 4.07 N ATOM 304 CA VAL 29 -3.271 -2.025 -4.028 1.00 4.07 C ATOM 305 CB VAL 29 -2.023 -2.307 -3.056 1.00 4.07 C ATOM 306 CG1 VAL 29 -0.693 -2.363 -3.843 1.00 4.07 C ATOM 307 CG2 VAL 29 -1.947 -1.302 -1.893 1.00 4.07 C ATOM 308 C VAL 29 -3.329 -0.591 -4.588 1.00 4.07 C ATOM 309 O VAL 29 -2.511 -0.213 -5.447 1.00 4.07 O ATOM 310 N GLU 30 -4.373 0.141 -4.172 1.00 3.06 N ATOM 312 CA GLU 30 -4.561 1.540 -4.555 1.00 3.06 C ATOM 313 CB GLU 30 -5.999 1.806 -5.013 1.00 3.06 C ATOM 314 CG GLU 30 -6.104 2.622 -6.298 1.00 3.06 C ATOM 315 CD GLU 30 -7.541 2.866 -6.722 1.00 3.06 C ATOM 316 OE1 GLU 30 -8.088 2.036 -7.479 1.00 3.06 O ATOM 317 OE2 GLU 30 -8.122 3.887 -6.300 1.00 3.06 O ATOM 318 C GLU 30 -4.198 2.365 -3.313 1.00 3.06 C ATOM 319 O GLU 30 -4.897 2.357 -2.296 1.00 3.06 O ATOM 320 N VAL 31 -3.078 3.071 -3.437 1.00 2.23 N ATOM 322 CA VAL 31 -2.503 3.927 -2.404 1.00 2.23 C ATOM 323 CB VAL 31 -0.985 3.474 -2.062 1.00 2.23 C ATOM 324 CG1 VAL 31 0.021 3.789 -3.190 1.00 2.23 C ATOM 325 CG2 VAL 31 -0.522 3.997 -0.729 1.00 2.23 C ATOM 326 C VAL 31 -2.643 5.384 -2.904 1.00 2.23 C ATOM 327 O VAL 31 -2.212 5.706 -4.028 1.00 2.23 O ATOM 328 N ARG 32 -3.365 6.209 -2.134 1.00 2.74 N ATOM 330 CA ARG 32 -3.544 7.615 -2.504 1.00 2.74 C ATOM 331 CB ARG 32 -5.017 7.984 -2.680 1.00 2.74 C ATOM 332 CG ARG 32 -5.340 8.454 -4.099 1.00 2.74 C ATOM 333 CD ARG 32 -6.813 8.819 -4.267 1.00 2.74 C ATOM 334 NE ARG 32 -7.185 10.038 -3.541 1.00 2.74 N ATOM 336 CZ ARG 32 -8.405 10.577 -3.518 1.00 2.74 C ATOM 337 NH1 ARG 32 -9.415 10.024 -4.182 1.00 2.74 N ATOM 340 NH2 ARG 32 -8.616 11.686 -2.822 1.00 2.74 N ATOM 343 C ARG 32 -2.826 8.602 -1.584 1.00 2.74 C ATOM 344 O ARG 32 -3.173 8.778 -0.412 1.00 2.74 O ATOM 345 N CYS 33 -1.803 9.222 -2.172 1.00 3.30 N ATOM 347 CA CYS 33 -0.935 10.227 -1.561 1.00 3.30 C ATOM 348 CB CYS 33 0.546 9.903 -1.800 1.00 3.30 C ATOM 349 SG CYS 33 1.070 9.863 -3.532 1.00 3.30 S ATOM 350 C CYS 33 -1.298 11.545 -2.238 1.00 3.30 C ATOM 351 O CYS 33 -1.889 11.554 -3.326 1.00 3.30 O ATOM 352 N SER 34 -0.919 12.645 -1.597 1.00 4.00 N ATOM 354 CA SER 34 -1.202 13.990 -2.080 1.00 4.00 C ATOM 355 CB SER 34 -1.127 14.938 -0.896 1.00 4.00 C ATOM 356 OG SER 34 0.108 14.758 -0.231 1.00 4.00 O ATOM 358 C SER 34 -0.305 14.522 -3.206 1.00 4.00 C ATOM 359 O SER 34 -0.680 15.495 -3.868 1.00 4.00 O ATOM 360 N ASP 35 0.820 13.848 -3.477 1.00 4.46 N ATOM 362 CA ASP 35 1.758 14.333 -4.495 1.00 4.46 C ATOM 363 CB ASP 35 3.170 14.438 -3.877 1.00 4.46 C ATOM 364 CG ASP 35 4.192 15.094 -4.799 1.00 4.46 C ATOM 365 OD1 ASP 35 4.281 16.343 -4.812 1.00 4.46 O ATOM 366 OD2 ASP 35 4.923 14.359 -5.496 1.00 4.46 O ATOM 367 C ASP 35 1.817 13.681 -5.885 1.00 4.46 C ATOM 368 O ASP 35 1.305 14.265 -6.843 1.00 4.46 O ATOM 369 N THR 36 2.413 12.486 -5.989 1.00 4.26 N ATOM 371 CA THR 36 2.598 11.807 -7.278 1.00 4.26 C ATOM 372 CB THR 36 4.104 11.927 -7.719 1.00 4.26 C ATOM 373 OG1 THR 36 4.441 13.310 -7.885 1.00 4.26 O ATOM 375 CG2 THR 36 4.377 11.199 -9.012 1.00 4.26 C ATOM 376 C THR 36 2.124 10.344 -7.323 1.00 4.26 C ATOM 377 O THR 36 2.849 9.447 -6.886 1.00 4.26 O ATOM 378 N LYS 37 1.058 10.098 -8.091 1.00 3.96 N ATOM 380 CA LYS 37 0.475 8.756 -8.218 1.00 3.96 C ATOM 381 CB LYS 37 -0.997 8.819 -8.687 1.00 3.96 C ATOM 382 CG LYS 37 -1.272 9.606 -9.974 1.00 3.96 C ATOM 383 CD LYS 37 -2.755 9.592 -10.325 1.00 3.96 C ATOM 384 CE LYS 37 -3.053 10.370 -11.605 1.00 3.96 C ATOM 385 NZ LYS 37 -2.857 11.844 -11.467 1.00 3.96 N ATOM 389 C LYS 37 1.301 7.820 -9.119 1.00 3.96 C ATOM 390 O LYS 37 1.592 8.151 -10.268 1.00 3.96 O ATOM 391 N TYR 38 1.845 6.775 -8.492 1.00 3.72 N ATOM 393 CA TYR 38 2.632 5.735 -9.160 1.00 3.72 C ATOM 394 CB TYR 38 4.129 5.803 -8.762 1.00 3.72 C ATOM 395 CG TYR 38 4.487 5.752 -7.275 1.00 3.72 C ATOM 396 CD1 TYR 38 4.580 4.520 -6.575 1.00 3.72 C ATOM 397 CE1 TYR 38 4.969 4.474 -5.216 1.00 3.72 C ATOM 398 CD2 TYR 38 4.800 6.936 -6.571 1.00 3.72 C ATOM 399 CE2 TYR 38 5.196 6.897 -5.213 1.00 3.72 C ATOM 400 CZ TYR 38 5.273 5.665 -4.545 1.00 3.72 C ATOM 401 OH TYR 38 5.616 5.637 -3.214 1.00 3.72 O ATOM 403 C TYR 38 2.037 4.395 -8.751 1.00 3.72 C ATOM 404 O TYR 38 1.142 4.361 -7.919 1.00 3.72 O ATOM 405 N THR 39 2.576 3.300 -9.288 1.00 2.33 N ATOM 407 CA THR 39 2.114 1.952 -8.958 1.00 2.33 C ATOM 408 CB THR 39 1.700 1.178 -10.245 1.00 2.33 C ATOM 409 OG1 THR 39 2.808 1.109 -11.154 1.00 2.33 O ATOM 411 CG2 THR 39 0.541 1.895 -10.930 1.00 2.33 C ATOM 412 C THR 39 3.237 1.226 -8.189 1.00 2.33 C ATOM 413 O THR 39 4.416 1.547 -8.381 1.00 2.33 O ATOM 414 N LEU 40 2.860 0.337 -7.258 1.00 2.95 N ATOM 416 CA LEU 40 3.812 -0.443 -6.444 1.00 2.95 C ATOM 417 CB LEU 40 3.454 -0.337 -4.937 1.00 2.95 C ATOM 418 CG LEU 40 4.124 -0.904 -3.648 1.00 2.95 C ATOM 419 CD1 LEU 40 3.600 -2.306 -3.330 1.00 2.95 C ATOM 420 CD2 LEU 40 5.664 -0.853 -3.635 1.00 2.95 C ATOM 421 C LEU 40 3.834 -1.902 -6.917 1.00 2.95 C ATOM 422 O LEU 40 3.066 -2.259 -7.804 1.00 2.95 O ATOM 423 N CYS 41 4.757 -2.704 -6.367 1.00 4.42 N ATOM 425 CA CYS 41 4.923 -4.125 -6.708 1.00 4.42 C ATOM 426 CB CYS 41 6.180 -4.301 -7.562 1.00 4.42 C ATOM 427 SG CYS 41 6.217 -3.127 -8.933 1.00 4.42 S ATOM 428 C CYS 41 4.995 -4.993 -5.458 1.00 4.42 C ATOM 429 O CYS 41 5.475 -4.483 -4.424 1.00 4.42 O ATOM 430 OXT CYS 41 4.561 -6.164 -5.521 1.00 4.42 O TER END