####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS497_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 1 - 29 4.83 12.23 LCS_AVERAGE: 60.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 1.98 14.02 LCS_AVERAGE: 25.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 0.99 14.88 LCS_AVERAGE: 20.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 29 0 3 3 4 4 6 8 9 10 11 13 19 21 21 24 26 27 28 29 29 LCS_GDT Q 2 Q 2 8 16 29 0 4 7 9 15 16 17 18 19 21 24 26 26 26 27 27 27 28 29 29 LCS_GDT E 3 E 3 14 16 29 4 8 12 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 29 29 LCS_GDT T 4 T 4 14 16 29 4 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 29 32 LCS_GDT R 5 R 5 14 16 29 6 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT K 6 K 6 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 29 30 LCS_GDT K 7 K 7 14 16 29 4 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 29 32 LCS_GDT C 8 C 8 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT T 9 T 9 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT E 10 E 10 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT M 11 M 11 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT K 12 K 12 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT K 13 K 13 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT K 14 K 14 14 16 29 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT F 15 F 15 14 16 29 6 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT K 16 K 16 14 16 29 6 10 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT N 17 N 17 6 16 29 3 5 6 6 6 10 14 16 19 21 24 26 26 26 27 27 27 28 29 32 LCS_GDT C 18 C 18 6 7 29 3 5 6 6 6 6 10 16 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT E 19 E 19 6 7 29 3 5 6 6 7 8 10 16 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT V 20 V 20 6 7 29 3 5 6 7 7 8 11 16 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT R 21 R 21 6 7 29 3 5 6 6 6 6 11 16 19 21 24 26 26 26 27 27 27 28 29 31 LCS_GDT C 22 C 22 6 7 29 3 5 6 7 7 8 9 11 11 21 23 26 26 26 27 27 27 28 29 32 LCS_GDT D 23 D 23 3 7 29 3 3 4 7 7 10 15 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT E 24 E 24 3 5 29 3 3 5 8 13 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT S 25 S 25 4 6 29 3 4 5 6 6 8 10 10 11 12 17 19 21 22 27 27 27 28 31 32 LCS_GDT N 26 N 26 5 8 29 3 3 5 6 9 15 17 18 18 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT H 27 H 27 6 8 29 4 5 6 6 7 8 12 16 19 21 24 26 26 26 27 27 27 28 31 32 LCS_GDT C 28 C 28 6 8 29 4 5 6 6 8 8 9 11 13 21 23 26 26 26 27 27 27 28 31 32 LCS_GDT V 29 V 29 6 8 29 4 5 6 6 8 8 9 11 11 12 14 14 15 18 26 27 27 27 31 32 LCS_GDT E 30 E 30 6 8 17 4 5 6 6 8 8 9 11 11 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT V 31 V 31 6 8 17 4 5 6 6 8 8 9 11 11 12 14 14 15 17 18 20 23 26 29 32 LCS_GDT R 32 R 32 6 8 17 4 5 6 6 8 8 9 11 11 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT C 33 C 33 5 8 17 4 5 5 6 8 8 9 11 11 12 14 14 15 17 18 24 25 27 31 32 LCS_GDT S 34 S 34 5 8 17 3 4 5 6 8 8 9 11 11 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT D 35 D 35 4 8 17 3 4 5 6 8 8 9 10 11 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT T 36 T 36 4 5 17 3 4 4 4 5 5 7 10 11 11 13 14 15 17 20 24 25 27 31 32 LCS_GDT K 37 K 37 5 5 17 4 4 5 7 7 8 9 10 10 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT Y 38 Y 38 5 5 13 4 4 5 7 7 8 9 10 10 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT T 39 T 39 5 5 10 4 4 5 7 7 8 9 10 10 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT L 40 L 40 5 5 10 4 4 5 7 7 8 9 10 10 12 14 14 15 17 20 24 25 27 31 32 LCS_GDT C 41 C 41 5 5 9 3 4 5 6 6 6 9 10 10 12 14 14 15 17 20 24 25 27 31 32 LCS_AVERAGE LCS_A: 35.28 ( 20.05 25.16 60.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 13 14 15 16 17 18 19 21 24 26 26 26 27 27 27 28 31 32 GDT PERCENT_AT 19.51 26.83 31.71 34.15 36.59 39.02 41.46 43.90 46.34 51.22 58.54 63.41 63.41 63.41 65.85 65.85 65.85 68.29 75.61 78.05 GDT RMS_LOCAL 0.27 0.53 0.81 0.99 1.32 1.78 2.03 2.39 3.05 3.42 3.77 4.02 4.02 4.02 4.27 4.27 4.27 4.56 7.46 7.55 GDT RMS_ALL_AT 15.68 15.39 14.94 14.88 14.62 13.95 13.75 13.36 12.14 11.65 12.10 12.08 12.08 12.08 12.21 12.21 12.21 12.32 9.55 9.56 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 8.076 0 0.505 0.925 12.136 0.000 0.000 12.136 LGA Q 2 Q 2 2.381 0 0.337 0.938 3.946 45.000 43.636 3.075 LGA E 3 E 3 1.465 0 0.183 1.245 4.596 61.818 41.616 1.729 LGA T 4 T 4 2.478 0 0.052 0.045 3.902 33.636 30.130 3.902 LGA R 5 R 5 2.402 0 0.073 1.713 11.777 41.364 19.174 10.086 LGA K 6 K 6 0.440 0 0.041 0.894 4.733 82.273 55.758 4.733 LGA K 7 K 7 2.046 0 0.082 0.682 5.397 41.364 24.444 5.397 LGA C 8 C 8 2.870 0 0.047 0.052 4.587 35.455 25.758 4.587 LGA T 9 T 9 1.962 0 0.054 1.063 3.078 58.182 46.753 2.232 LGA E 10 E 10 0.717 0 0.025 0.210 4.458 86.364 51.111 4.458 LGA M 11 M 11 1.409 0 0.056 1.194 2.991 69.545 51.136 2.991 LGA K 12 K 12 2.130 0 0.022 0.793 8.473 44.545 23.636 8.473 LGA K 13 K 13 2.512 0 0.027 0.933 4.511 35.909 24.444 2.930 LGA K 14 K 14 1.880 0 0.047 0.139 3.516 51.364 37.374 2.762 LGA F 15 F 15 0.402 0 0.419 1.205 6.139 75.455 47.934 5.597 LGA K 16 K 16 0.689 0 0.472 1.353 3.021 63.182 59.394 3.021 LGA N 17 N 17 6.210 0 0.056 1.157 11.812 0.455 0.227 10.526 LGA C 18 C 18 8.863 0 0.112 0.701 11.763 0.000 0.000 11.763 LGA E 19 E 19 9.968 0 0.179 1.100 15.593 0.000 0.000 14.689 LGA V 20 V 20 8.376 0 0.133 0.971 8.376 0.000 0.000 8.199 LGA R 21 R 21 8.410 0 0.045 1.455 14.208 0.000 0.000 14.208 LGA C 22 C 22 7.163 0 0.457 0.616 7.490 0.000 0.000 7.490 LGA D 23 D 23 5.263 0 0.489 1.242 9.526 9.091 4.545 9.069 LGA E 24 E 24 2.666 0 0.674 0.865 7.025 16.818 13.535 5.738 LGA S 25 S 25 7.168 0 0.233 0.662 9.280 0.000 0.000 9.280 LGA N 26 N 26 3.777 0 0.623 0.873 5.451 6.818 14.318 2.501 LGA H 27 H 27 6.397 0 0.359 0.976 13.115 1.364 0.545 12.748 LGA C 28 C 28 7.600 0 0.093 0.701 8.777 0.000 0.000 8.777 LGA V 29 V 29 11.181 0 0.060 0.971 15.233 0.000 0.000 12.599 LGA E 30 E 30 15.211 0 0.024 0.947 19.563 0.000 0.000 19.563 LGA V 31 V 31 19.420 0 0.068 1.124 23.460 0.000 0.000 23.460 LGA R 32 R 32 22.852 0 0.257 0.838 23.697 0.000 0.000 19.390 LGA C 33 C 33 26.638 0 0.506 0.576 28.700 0.000 0.000 28.058 LGA S 34 S 34 28.888 0 0.503 0.546 30.853 0.000 0.000 30.050 LGA D 35 D 35 29.953 0 0.176 1.223 30.707 0.000 0.000 30.707 LGA T 36 T 36 25.343 0 0.044 0.903 26.560 0.000 0.000 23.774 LGA K 37 K 37 24.407 0 0.521 1.455 27.678 0.000 0.000 27.678 LGA Y 38 Y 38 24.292 0 0.123 1.316 27.461 0.000 0.000 27.461 LGA T 39 T 39 19.676 0 0.140 1.141 21.793 0.000 0.000 17.785 LGA L 40 L 40 20.407 0 0.531 1.351 24.801 0.000 0.000 24.198 LGA C 41 C 41 16.362 0 0.158 0.781 17.971 0.000 0.000 14.520 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 9.167 9.053 10.342 20.976 15.011 6.208 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 18 2.39 42.683 39.678 0.723 LGA_LOCAL RMSD: 2.389 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.365 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.167 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.673085 * X + -0.339827 * Y + -0.656867 * Z + -1.768079 Y_new = -0.604163 * X + -0.259608 * Y + 0.753386 * Z + -5.801931 Z_new = -0.426549 * X + 0.903948 * Y + -0.030573 * Z + 3.373039 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.410104 0.440674 1.604605 [DEG: -138.0888 25.2487 91.9371 ] ZXZ: -2.424529 1.601374 -0.440894 [DEG: -138.9153 91.7520 -25.2614 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS497_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 18 2.39 39.678 9.17 REMARK ---------------------------------------------------------- MOLECULE T0955TS497_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 CB SER 1 -3.948 -7.599 3.934 1.00 1.97 C ATOM 2 OG SER 1 -3.089 -6.520 3.607 1.00 1.97 O ATOM 4 C SER 1 -2.144 -9.375 3.553 1.00 1.97 C ATOM 5 O SER 1 -1.286 -8.541 3.884 1.00 1.97 O ATOM 8 N SER 1 -4.559 -9.978 3.501 1.00 1.97 N ATOM 10 CA SER 1 -3.573 -8.909 3.186 1.00 1.97 C ATOM 11 N GLN 2 -1.889 -10.693 3.516 1.00 1.71 N ATOM 13 CA GLN 2 -0.557 -11.219 3.888 1.00 1.71 C ATOM 14 CB GLN 2 -0.689 -12.649 4.404 1.00 1.71 C ATOM 15 CG GLN 2 -1.426 -12.818 5.726 1.00 1.71 C ATOM 16 CD GLN 2 -1.458 -14.263 6.186 1.00 1.71 C ATOM 17 OE1 GLN 2 -0.570 -14.715 6.909 1.00 1.71 O ATOM 18 NE2 GLN 2 -2.485 -14.996 5.769 1.00 1.71 N ATOM 21 C GLN 2 0.744 -11.150 3.046 1.00 1.71 C ATOM 22 O GLN 2 1.694 -10.546 3.527 1.00 1.71 O ATOM 23 N GLU 3 0.811 -11.728 1.832 1.00 1.60 N ATOM 25 CA GLU 3 2.071 -11.703 1.033 1.00 1.60 C ATOM 26 CB GLU 3 2.230 -13.027 0.249 1.00 1.60 C ATOM 27 CG GLU 3 1.031 -13.473 -0.613 1.00 1.60 C ATOM 28 CD GLU 3 1.286 -14.780 -1.339 1.00 1.60 C ATOM 29 OE1 GLU 3 1.793 -14.739 -2.480 1.00 1.60 O ATOM 30 OE2 GLU 3 0.978 -15.848 -0.771 1.00 1.60 O ATOM 31 C GLU 3 2.530 -10.503 0.159 1.00 1.60 C ATOM 32 O GLU 3 3.542 -9.850 0.468 1.00 1.60 O ATOM 33 N THR 4 1.715 -10.159 -0.850 1.00 1.91 N ATOM 35 CA THR 4 1.977 -9.040 -1.782 1.00 1.91 C ATOM 36 CB THR 4 1.093 -9.129 -3.096 1.00 1.91 C ATOM 37 OG1 THR 4 1.255 -7.938 -3.879 1.00 1.91 O ATOM 39 CG2 THR 4 -0.406 -9.362 -2.793 1.00 1.91 C ATOM 40 C THR 4 1.727 -7.769 -0.973 1.00 1.91 C ATOM 41 O THR 4 2.437 -6.760 -1.098 1.00 1.91 O ATOM 42 N ARG 5 0.703 -7.887 -0.123 1.00 1.53 N ATOM 44 CA ARG 5 0.260 -6.843 0.782 1.00 1.53 C ATOM 45 CB ARG 5 -1.211 -7.008 1.183 1.00 1.53 C ATOM 46 CG ARG 5 -2.260 -7.054 0.026 1.00 1.53 C ATOM 47 CD ARG 5 -2.671 -5.678 -0.564 1.00 1.53 C ATOM 48 NE ARG 5 -1.575 -5.039 -1.301 1.00 1.53 N ATOM 50 CZ ARG 5 -1.663 -4.540 -2.535 1.00 1.53 C ATOM 51 NH1 ARG 5 -0.595 -3.988 -3.096 1.00 1.53 N ATOM 54 NH2 ARG 5 -2.807 -4.574 -3.211 1.00 1.53 N ATOM 57 C ARG 5 1.194 -6.512 1.957 1.00 1.53 C ATOM 58 O ARG 5 1.163 -5.377 2.417 1.00 1.53 O ATOM 59 N LYS 6 1.955 -7.489 2.492 1.00 1.26 N ATOM 61 CA LYS 6 2.921 -7.221 3.593 1.00 1.26 C ATOM 62 CB LYS 6 3.557 -8.502 4.185 1.00 1.26 C ATOM 63 CG LYS 6 4.520 -9.314 3.299 1.00 1.26 C ATOM 64 CD LYS 6 5.051 -10.535 4.033 1.00 1.26 C ATOM 65 CE LYS 6 6.002 -11.335 3.159 1.00 1.26 C ATOM 66 NZ LYS 6 6.531 -12.534 3.866 1.00 1.26 N ATOM 70 C LYS 6 3.995 -6.258 3.070 1.00 1.26 C ATOM 71 O LYS 6 4.446 -5.362 3.791 1.00 1.26 O ATOM 72 N LYS 7 4.358 -6.457 1.794 1.00 1.24 N ATOM 74 CA LYS 7 5.335 -5.630 1.070 1.00 1.24 C ATOM 75 CB LYS 7 5.666 -6.281 -0.283 1.00 1.24 C ATOM 76 CG LYS 7 7.092 -6.038 -0.795 1.00 1.24 C ATOM 77 CD LYS 7 7.321 -6.721 -2.139 1.00 1.24 C ATOM 78 CE LYS 7 8.735 -6.491 -2.669 1.00 1.24 C ATOM 79 NZ LYS 7 9.792 -7.182 -1.869 1.00 1.24 N ATOM 83 C LYS 7 4.694 -4.236 0.872 1.00 1.24 C ATOM 84 O LYS 7 5.333 -3.211 1.135 1.00 1.24 O ATOM 85 N CYS 8 3.409 -4.236 0.483 1.00 1.35 N ATOM 87 CA CYS 8 2.598 -3.026 0.238 1.00 1.35 C ATOM 88 CB CYS 8 1.302 -3.399 -0.494 1.00 1.35 C ATOM 89 SG CYS 8 0.330 -1.997 -1.112 1.00 1.35 S ATOM 90 C CYS 8 2.275 -2.216 1.511 1.00 1.35 C ATOM 91 O CYS 8 2.412 -0.991 1.495 1.00 1.35 O ATOM 92 N THR 9 1.893 -2.904 2.601 1.00 1.40 N ATOM 94 CA THR 9 1.543 -2.282 3.900 1.00 1.40 C ATOM 95 CB THR 9 0.739 -3.253 4.857 1.00 1.40 C ATOM 96 OG1 THR 9 0.199 -2.506 5.954 1.00 1.40 O ATOM 98 CG2 THR 9 1.604 -4.385 5.408 1.00 1.40 C ATOM 99 C THR 9 2.769 -1.644 4.591 1.00 1.40 C ATOM 100 O THR 9 2.640 -0.609 5.249 1.00 1.40 O ATOM 101 N GLU 10 3.938 -2.283 4.426 1.00 1.25 N ATOM 103 CA GLU 10 5.230 -1.821 4.978 1.00 1.25 C ATOM 104 CB GLU 10 6.300 -2.905 4.757 1.00 1.25 C ATOM 105 CG GLU 10 7.404 -2.963 5.821 1.00 1.25 C ATOM 106 CD GLU 10 8.425 -4.051 5.545 1.00 1.25 C ATOM 107 OE1 GLU 10 8.228 -5.189 6.021 1.00 1.25 O ATOM 108 OE2 GLU 10 9.427 -3.768 4.855 1.00 1.25 O ATOM 109 C GLU 10 5.598 -0.500 4.254 1.00 1.25 C ATOM 110 O GLU 10 6.075 0.453 4.890 1.00 1.25 O ATOM 111 N MET 11 5.334 -0.465 2.937 1.00 1.23 N ATOM 113 CA MET 11 5.553 0.708 2.065 1.00 1.23 C ATOM 114 CG MET 11 6.593 -0.450 0.013 1.00 1.23 C ATOM 115 SD MET 11 6.503 -0.650 -1.781 1.00 1.23 S ATOM 116 CE MET 11 5.958 -2.354 -1.922 1.00 1.23 C ATOM 117 C MET 11 4.541 1.816 2.419 1.00 1.23 C ATOM 118 O MET 11 4.887 3.004 2.425 1.00 1.23 O ATOM 119 CB MET 11 5.409 0.324 0.586 1.00 1.23 C ATOM 120 N LYS 12 3.304 1.390 2.723 1.00 1.47 N ATOM 122 CA LYS 12 2.166 2.251 3.119 1.00 1.47 C ATOM 123 CB LYS 12 0.854 1.449 3.101 1.00 1.47 C ATOM 124 CG LYS 12 0.230 1.296 1.722 1.00 1.47 C ATOM 125 CD LYS 12 -1.078 0.517 1.791 1.00 1.47 C ATOM 126 CE LYS 12 -1.738 0.374 0.421 1.00 1.47 C ATOM 127 NZ LYS 12 -2.258 1.661 -0.129 1.00 1.47 N ATOM 131 C LYS 12 2.374 2.882 4.507 1.00 1.47 C ATOM 132 O LYS 12 1.988 4.032 4.727 1.00 1.47 O ATOM 133 N LYS 13 2.983 2.107 5.419 1.00 1.58 N ATOM 135 CA LYS 13 3.294 2.505 6.810 1.00 1.58 C ATOM 136 CB LYS 13 3.728 1.269 7.621 1.00 1.58 C ATOM 137 CG LYS 13 3.467 1.337 9.132 1.00 1.58 C ATOM 138 CD LYS 13 3.996 0.098 9.835 1.00 1.58 C ATOM 139 CE LYS 13 3.804 0.196 11.338 1.00 1.58 C ATOM 140 NZ LYS 13 4.318 -1.011 12.043 1.00 1.58 N ATOM 144 C LYS 13 4.393 3.593 6.822 1.00 1.58 C ATOM 145 O LYS 13 4.308 4.550 7.603 1.00 1.58 O ATOM 146 N LYS 14 5.407 3.423 5.959 1.00 1.61 N ATOM 148 CA LYS 14 6.534 4.369 5.799 1.00 1.61 C ATOM 149 CB LYS 14 7.652 3.752 4.945 1.00 1.61 C ATOM 150 CG LYS 14 8.405 2.605 5.612 1.00 1.61 C ATOM 151 CD LYS 14 9.493 2.053 4.699 1.00 1.61 C ATOM 152 CE LYS 14 10.262 0.903 5.346 1.00 1.61 C ATOM 153 NZ LYS 14 9.447 -0.337 5.521 1.00 1.61 N ATOM 157 C LYS 14 6.041 5.684 5.163 1.00 1.61 C ATOM 158 O LYS 14 6.434 6.773 5.595 1.00 1.61 O ATOM 159 N PHE 15 5.189 5.548 4.135 1.00 1.56 N ATOM 161 CA PHE 15 4.556 6.651 3.382 1.00 1.56 C ATOM 162 CB PHE 15 3.908 6.103 2.080 1.00 1.56 C ATOM 163 CG PHE 15 3.767 7.124 0.944 1.00 1.56 C ATOM 164 CD1 PHE 15 2.593 7.904 0.813 1.00 1.56 C ATOM 165 CD2 PHE 15 4.792 7.282 -0.019 1.00 1.56 C ATOM 166 CE1 PHE 15 2.439 8.826 -0.259 1.00 1.56 C ATOM 167 CE2 PHE 15 4.653 8.201 -1.096 1.00 1.56 C ATOM 168 CZ PHE 15 3.473 8.975 -1.215 1.00 1.56 C ATOM 169 C PHE 15 3.502 7.391 4.239 1.00 1.56 C ATOM 170 O PHE 15 3.311 8.601 4.079 1.00 1.56 O ATOM 171 N LYS 16 2.816 6.618 5.102 1.00 1.71 N ATOM 173 CA LYS 16 1.730 7.012 6.050 1.00 1.71 C ATOM 174 CB LYS 16 1.955 8.383 6.737 1.00 1.71 C ATOM 175 CG LYS 16 3.114 8.413 7.727 1.00 1.71 C ATOM 176 CD LYS 16 3.269 9.793 8.357 1.00 1.71 C ATOM 177 CE LYS 16 4.426 9.847 9.352 1.00 1.71 C ATOM 178 NZ LYS 16 5.770 9.727 8.712 1.00 1.71 N ATOM 182 C LYS 16 0.322 6.900 5.421 1.00 1.71 C ATOM 183 O LYS 16 -0.285 7.904 5.019 1.00 1.71 O ATOM 184 N ASN 17 -0.151 5.648 5.306 1.00 2.10 N ATOM 186 CA ASN 17 -1.466 5.289 4.739 1.00 2.10 C ATOM 187 CB ASN 17 -1.284 4.546 3.393 1.00 2.10 C ATOM 188 CG ASN 17 -2.481 4.709 2.452 1.00 2.10 C ATOM 189 OD1 ASN 17 -2.524 5.634 1.638 1.00 2.10 O ATOM 190 ND2 ASN 17 -3.445 3.800 2.554 1.00 2.10 N ATOM 193 C ASN 17 -2.209 4.384 5.743 1.00 2.10 C ATOM 194 O ASN 17 -3.431 4.209 5.635 1.00 2.10 O ATOM 195 N CYS 18 -1.459 3.824 6.711 1.00 3.19 N ATOM 197 CA CYS 18 -1.926 2.906 7.788 1.00 3.19 C ATOM 198 CB CYS 18 -2.719 3.655 8.884 1.00 3.19 C ATOM 199 SG CYS 18 -4.292 4.389 8.367 1.00 3.19 S ATOM 200 C CYS 18 -2.683 1.644 7.313 1.00 3.19 C ATOM 201 O CYS 18 -2.761 1.396 6.104 1.00 3.19 O ATOM 202 N GLU 19 -3.216 0.856 8.261 1.00 3.37 N ATOM 204 CA GLU 19 -3.961 -0.384 7.972 1.00 3.37 C ATOM 205 CB GLU 19 -3.755 -1.424 9.107 1.00 3.37 C ATOM 206 CG GLU 19 -3.958 -0.952 10.579 1.00 3.37 C ATOM 207 CD GLU 19 -2.663 -0.538 11.271 1.00 3.37 C ATOM 208 OE1 GLU 19 -2.303 0.655 11.198 1.00 3.37 O ATOM 209 OE2 GLU 19 -2.011 -1.409 11.884 1.00 3.37 O ATOM 210 C GLU 19 -5.463 -0.179 7.656 1.00 3.37 C ATOM 211 O GLU 19 -6.187 0.457 8.432 1.00 3.37 O ATOM 212 N VAL 20 -5.889 -0.708 6.500 1.00 2.65 N ATOM 214 CA VAL 20 -7.277 -0.639 5.995 1.00 2.65 C ATOM 215 CB VAL 20 -7.432 0.353 4.767 1.00 2.65 C ATOM 216 CG1 VAL 20 -7.449 1.790 5.265 1.00 2.65 C ATOM 217 CG2 VAL 20 -6.294 0.178 3.732 1.00 2.65 C ATOM 218 C VAL 20 -7.791 -2.038 5.614 1.00 2.65 C ATOM 219 O VAL 20 -7.010 -2.860 5.112 1.00 2.65 O ATOM 220 N ARG 21 -9.077 -2.314 5.880 1.00 3.29 N ATOM 222 CA ARG 21 -9.685 -3.613 5.546 1.00 3.29 C ATOM 223 CB ARG 21 -10.320 -4.244 6.809 1.00 3.29 C ATOM 224 CG ARG 21 -9.503 -5.346 7.537 1.00 3.29 C ATOM 225 CD ARG 21 -8.364 -4.843 8.452 1.00 3.29 C ATOM 226 NE ARG 21 -7.217 -4.376 7.673 1.00 3.29 N ATOM 228 CZ ARG 21 -5.988 -4.177 8.152 1.00 3.29 C ATOM 229 NH1 ARG 21 -5.032 -3.755 7.335 1.00 3.29 N ATOM 232 NH2 ARG 21 -5.702 -4.396 9.431 1.00 3.29 N ATOM 235 C ARG 21 -10.723 -3.526 4.415 1.00 3.29 C ATOM 236 O ARG 21 -11.702 -2.771 4.505 1.00 3.29 O ATOM 237 N CYS 22 -10.446 -4.270 3.334 1.00 4.35 N ATOM 239 CA CYS 22 -11.294 -4.394 2.135 1.00 4.35 C ATOM 240 CB CYS 22 -10.721 -3.566 0.967 1.00 4.35 C ATOM 241 SG CYS 22 -10.583 -1.796 1.303 1.00 4.35 S ATOM 242 C CYS 22 -11.368 -5.892 1.777 1.00 4.35 C ATOM 243 O CYS 22 -12.329 -6.580 2.141 1.00 4.35 O ATOM 244 N ASP 23 -10.333 -6.363 1.059 1.00 3.94 N ATOM 246 CA ASP 23 -10.114 -7.750 0.593 1.00 3.94 C ATOM 247 CB ASP 23 -11.085 -8.146 -0.544 1.00 3.94 C ATOM 248 CG ASP 23 -11.385 -9.645 -0.577 1.00 3.94 C ATOM 249 OD1 ASP 23 -12.394 -10.065 0.030 1.00 3.94 O ATOM 250 OD2 ASP 23 -10.622 -10.400 -1.219 1.00 3.94 O ATOM 251 C ASP 23 -8.661 -7.698 0.072 1.00 3.94 C ATOM 252 O ASP 23 -7.801 -8.451 0.541 1.00 3.94 O ATOM 253 N GLU 24 -8.418 -6.775 -0.874 1.00 4.71 N ATOM 255 CA GLU 24 -7.116 -6.477 -1.515 1.00 4.71 C ATOM 256 CB GLU 24 -6.739 -7.488 -2.616 1.00 4.71 C ATOM 257 CG GLU 24 -5.985 -8.719 -2.116 1.00 4.71 C ATOM 258 CD GLU 24 -5.268 -9.473 -3.225 1.00 4.71 C ATOM 259 OE1 GLU 24 -4.034 -9.323 -3.340 1.00 4.71 O ATOM 260 OE2 GLU 24 -5.930 -10.221 -3.976 1.00 4.71 O ATOM 261 C GLU 24 -7.228 -5.076 -2.134 1.00 4.71 C ATOM 262 O GLU 24 -8.319 -4.679 -2.563 1.00 4.71 O ATOM 263 N SER 25 -6.108 -4.340 -2.172 1.00 4.65 N ATOM 265 CA SER 25 -6.041 -2.975 -2.728 1.00 4.65 C ATOM 266 CB SER 25 -5.165 -2.082 -1.834 1.00 4.65 C ATOM 267 OG SER 25 -3.887 -2.653 -1.619 1.00 4.65 O ATOM 269 C SER 25 -5.554 -2.952 -4.194 1.00 4.65 C ATOM 270 O SER 25 -5.441 -1.878 -4.806 1.00 4.65 O ATOM 271 N ASN 26 -5.326 -4.149 -4.754 1.00 5.08 N ATOM 273 CA ASN 26 -4.861 -4.347 -6.141 1.00 5.08 C ATOM 274 CB ASN 26 -3.737 -5.418 -6.189 1.00 5.08 C ATOM 275 CG ASN 26 -4.091 -6.710 -5.446 1.00 5.08 C ATOM 276 OD1 ASN 26 -3.999 -6.785 -4.220 1.00 5.08 O ATOM 277 ND2 ASN 26 -4.468 -7.737 -6.199 1.00 5.08 N ATOM 280 C ASN 26 -6.022 -4.635 -7.135 1.00 5.08 C ATOM 281 O ASN 26 -7.178 -4.330 -6.816 1.00 5.08 O ATOM 282 N HIS 27 -5.713 -5.209 -8.310 1.00 5.17 N ATOM 284 CA HIS 27 -6.697 -5.531 -9.369 1.00 5.17 C ATOM 285 CG HIS 27 -6.789 -5.331 -11.924 1.00 5.17 C ATOM 286 CD2 HIS 27 -6.645 -4.324 -12.821 1.00 5.17 C ATOM 287 ND1 HIS 27 -7.900 -6.043 -12.327 1.00 5.17 N ATOM 289 CE1 HIS 27 -8.405 -5.494 -13.417 1.00 5.17 C ATOM 290 NE2 HIS 27 -7.662 -4.450 -13.737 1.00 5.17 N ATOM 292 C HIS 27 -7.566 -6.772 -9.054 1.00 5.17 C ATOM 293 O HIS 27 -8.773 -6.764 -9.322 1.00 5.17 O ATOM 294 CB HIS 27 -5.970 -5.709 -10.721 1.00 5.17 C ATOM 295 N CYS 28 -6.937 -7.816 -8.492 1.00 5.01 N ATOM 297 CA CYS 28 -7.595 -9.080 -8.110 1.00 5.01 C ATOM 298 CB CYS 28 -6.755 -10.280 -8.571 1.00 5.01 C ATOM 299 SG CYS 28 -7.536 -11.899 -8.337 1.00 5.01 S ATOM 300 C CYS 28 -7.772 -9.107 -6.582 1.00 5.01 C ATOM 301 O CYS 28 -6.910 -8.591 -5.861 1.00 5.01 O ATOM 302 N VAL 29 -8.889 -9.674 -6.101 1.00 4.97 N ATOM 304 CA VAL 29 -9.175 -9.745 -4.654 1.00 4.97 C ATOM 305 CB VAL 29 -10.564 -9.075 -4.283 1.00 4.97 C ATOM 306 CG1 VAL 29 -10.437 -7.561 -4.329 1.00 4.97 C ATOM 307 CG2 VAL 29 -11.696 -9.535 -5.230 1.00 4.97 C ATOM 308 C VAL 29 -9.061 -11.153 -4.023 1.00 4.97 C ATOM 309 O VAL 29 -9.683 -12.118 -4.494 1.00 4.97 O ATOM 310 N GLU 30 -8.208 -11.239 -2.993 1.00 4.27 N ATOM 312 CA GLU 30 -7.924 -12.452 -2.199 1.00 4.27 C ATOM 313 CB GLU 30 -6.516 -13.003 -2.491 1.00 4.27 C ATOM 314 CG GLU 30 -6.339 -13.602 -3.884 1.00 4.27 C ATOM 315 CD GLU 30 -4.936 -14.130 -4.121 1.00 4.27 C ATOM 316 OE1 GLU 30 -4.080 -13.355 -4.599 1.00 4.27 O ATOM 317 OE2 GLU 30 -4.689 -15.319 -3.832 1.00 4.27 O ATOM 318 C GLU 30 -8.011 -12.066 -0.720 1.00 4.27 C ATOM 319 O GLU 30 -7.633 -10.941 -0.364 1.00 4.27 O ATOM 320 N VAL 31 -8.520 -12.970 0.131 1.00 4.29 N ATOM 322 CA VAL 31 -8.624 -12.714 1.582 1.00 4.29 C ATOM 323 CB VAL 31 -10.132 -12.878 2.107 1.00 4.29 C ATOM 324 CG1 VAL 31 -10.663 -14.315 1.927 1.00 4.29 C ATOM 325 CG2 VAL 31 -10.288 -12.383 3.555 1.00 4.29 C ATOM 326 C VAL 31 -7.587 -13.589 2.339 1.00 4.29 C ATOM 327 O VAL 31 -7.550 -14.817 2.175 1.00 4.29 O ATOM 328 N ARG 32 -6.731 -12.914 3.118 1.00 3.24 N ATOM 330 CA ARG 32 -5.659 -13.519 3.931 1.00 3.24 C ATOM 331 CB ARG 32 -4.274 -13.206 3.334 1.00 3.24 C ATOM 332 CG ARG 32 -3.989 -13.890 1.991 1.00 3.24 C ATOM 333 CD ARG 32 -2.725 -13.358 1.313 1.00 3.24 C ATOM 334 NE ARG 32 -2.863 -11.969 0.860 1.00 3.24 N ATOM 336 CZ ARG 32 -2.480 -11.505 -0.330 1.00 3.24 C ATOM 337 NH1 ARG 32 -2.657 -10.224 -0.620 1.00 3.24 N ATOM 340 NH2 ARG 32 -1.928 -12.306 -1.237 1.00 3.24 N ATOM 343 C ARG 32 -5.765 -12.961 5.356 1.00 3.24 C ATOM 344 O ARG 32 -6.107 -11.786 5.527 1.00 3.24 O ATOM 345 N CYS 33 -5.487 -13.797 6.365 1.00 4.77 N ATOM 347 CA CYS 33 -5.568 -13.392 7.779 1.00 4.77 C ATOM 348 CB CYS 33 -6.496 -14.336 8.555 1.00 4.77 C ATOM 349 SG CYS 33 -8.196 -14.385 7.940 1.00 4.77 S ATOM 350 C CYS 33 -4.220 -13.255 8.510 1.00 4.77 C ATOM 351 O CYS 33 -3.417 -14.196 8.543 1.00 4.77 O ATOM 352 N SER 34 -4.004 -12.059 9.088 1.00 5.98 N ATOM 354 CA SER 34 -2.816 -11.632 9.874 1.00 5.98 C ATOM 355 CB SER 34 -2.956 -12.056 11.346 1.00 5.98 C ATOM 356 OG SER 34 -4.131 -11.514 11.924 1.00 5.98 O ATOM 358 C SER 34 -1.384 -11.927 9.379 1.00 5.98 C ATOM 359 O SER 34 -1.049 -13.076 9.057 1.00 5.98 O ATOM 360 N ASP 35 -0.568 -10.862 9.313 1.00 7.71 N ATOM 362 CA ASP 35 0.852 -10.891 8.900 1.00 7.71 C ATOM 363 CB ASP 35 1.011 -10.582 7.390 1.00 7.71 C ATOM 364 CG ASP 35 2.302 -11.148 6.794 1.00 7.71 C ATOM 365 OD1 ASP 35 2.283 -12.300 6.306 1.00 7.71 O ATOM 366 OD2 ASP 35 3.329 -10.434 6.800 1.00 7.71 O ATOM 367 C ASP 35 1.557 -9.810 9.746 1.00 7.71 C ATOM 368 O ASP 35 2.457 -10.127 10.533 1.00 7.71 O ATOM 369 N THR 36 1.133 -8.548 9.565 1.00 8.81 N ATOM 371 CA THR 36 1.659 -7.367 10.277 1.00 8.81 C ATOM 372 CB THR 36 2.390 -6.373 9.311 1.00 8.81 C ATOM 373 OG1 THR 36 1.566 -6.108 8.169 1.00 8.81 O ATOM 375 CG2 THR 36 3.725 -6.949 8.852 1.00 8.81 C ATOM 376 C THR 36 0.487 -6.651 10.973 1.00 8.81 C ATOM 377 O THR 36 -0.538 -6.369 10.332 1.00 8.81 O ATOM 378 N LYS 37 0.630 -6.403 12.289 1.00 8.75 N ATOM 380 CA LYS 37 -0.368 -5.733 13.173 1.00 8.75 C ATOM 381 CB LYS 37 -0.348 -4.199 12.980 1.00 8.75 C ATOM 382 CG LYS 37 0.853 -3.509 13.612 1.00 8.75 C ATOM 383 CD LYS 37 0.749 -1.994 13.498 1.00 8.75 C ATOM 384 CE LYS 37 1.884 -1.284 14.232 1.00 8.75 C ATOM 385 NZ LYS 37 1.808 -1.413 15.719 1.00 8.75 N ATOM 389 C LYS 37 -1.812 -6.288 13.077 1.00 8.75 C ATOM 390 O LYS 37 -2.783 -5.619 13.462 1.00 8.75 O ATOM 391 N TYR 38 -1.915 -7.543 12.605 1.00 5.61 N ATOM 393 CA TYR 38 -3.162 -8.322 12.381 1.00 5.61 C ATOM 394 CB TYR 38 -3.903 -8.644 13.715 1.00 5.61 C ATOM 395 CG TYR 38 -3.113 -9.430 14.769 1.00 5.61 C ATOM 396 CD1 TYR 38 -2.335 -8.762 15.748 1.00 5.61 C ATOM 397 CE1 TYR 38 -1.628 -9.484 16.749 1.00 5.61 C ATOM 398 CD2 TYR 38 -3.164 -10.845 14.820 1.00 5.61 C ATOM 399 CE2 TYR 38 -2.462 -11.575 15.818 1.00 5.61 C ATOM 400 CZ TYR 38 -1.699 -10.887 16.775 1.00 5.61 C ATOM 401 OH TYR 38 -1.016 -11.587 17.744 1.00 5.61 O ATOM 403 C TYR 38 -4.125 -7.670 11.368 1.00 5.61 C ATOM 404 O TYR 38 -4.492 -6.496 11.519 1.00 5.61 O ATOM 405 N THR 39 -4.507 -8.439 10.338 1.00 4.41 N ATOM 407 CA THR 39 -5.415 -7.993 9.263 1.00 4.41 C ATOM 408 CB THR 39 -4.642 -7.698 7.896 1.00 4.41 C ATOM 409 OG1 THR 39 -5.577 -7.346 6.867 1.00 4.41 O ATOM 411 CG2 THR 39 -3.776 -8.888 7.434 1.00 4.41 C ATOM 412 C THR 39 -6.598 -8.962 9.051 1.00 4.41 C ATOM 413 O THR 39 -6.432 -10.183 9.166 1.00 4.41 O ATOM 414 N LEU 40 -7.776 -8.392 8.762 1.00 7.99 N ATOM 416 CA LEU 40 -9.024 -9.134 8.506 1.00 7.99 C ATOM 417 CB LEU 40 -10.165 -8.562 9.402 1.00 7.99 C ATOM 418 CG LEU 40 -11.528 -9.159 9.875 1.00 7.99 C ATOM 419 CD1 LEU 40 -12.545 -9.304 8.734 1.00 7.99 C ATOM 420 CD2 LEU 40 -11.377 -10.476 10.658 1.00 7.99 C ATOM 421 C LEU 40 -9.353 -8.980 7.002 1.00 7.99 C ATOM 422 O LEU 40 -10.342 -9.541 6.509 1.00 7.99 O ATOM 423 N CYS 41 -8.461 -8.278 6.288 1.00 8.27 N ATOM 425 CA CYS 41 -8.560 -7.989 4.843 1.00 8.27 C ATOM 426 CB CYS 41 -7.702 -6.758 4.512 1.00 8.27 C ATOM 427 SG CYS 41 -7.866 -6.093 2.841 1.00 8.27 S ATOM 428 C CYS 41 -8.139 -9.184 3.976 1.00 8.27 C ATOM 429 O CYS 41 -8.904 -9.542 3.059 1.00 8.27 O ATOM 430 OXT CYS 41 -7.067 -9.765 4.245 1.00 8.27 O TER END