####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS497_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 1 - 24 4.72 11.44 LCS_AVERAGE: 47.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 1.84 16.40 LCS_AVERAGE: 25.04 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 0.90 17.19 LCS_AVERAGE: 18.68 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 24 0 3 3 4 5 5 6 8 9 9 10 10 13 16 16 27 27 27 28 29 LCS_GDT Q 2 Q 2 7 16 24 0 3 5 7 11 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT E 3 E 3 14 16 24 3 7 11 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT T 4 T 4 14 16 24 4 9 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT R 5 R 5 14 16 24 4 12 13 14 14 15 15 16 18 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT K 6 K 6 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT K 7 K 7 14 16 24 4 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT C 8 C 8 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT T 9 T 9 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT E 10 E 10 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT M 11 M 11 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT K 12 K 12 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT K 13 K 13 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT K 14 K 14 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT F 15 F 15 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT K 16 K 16 14 16 24 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT N 17 N 17 3 16 24 3 3 6 6 7 14 14 16 18 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT C 18 C 18 5 7 24 3 5 6 6 8 12 15 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT E 19 E 19 5 7 24 3 5 6 6 8 12 14 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT V 20 V 20 5 7 24 3 5 6 6 8 12 14 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT R 21 R 21 5 7 24 3 5 6 6 8 12 14 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT C 22 C 22 5 7 24 3 5 6 6 7 8 13 16 18 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT D 23 D 23 3 7 24 3 3 3 6 7 12 14 16 17 20 22 25 25 26 26 27 28 29 29 31 LCS_GDT E 24 E 24 3 5 24 3 3 3 4 5 6 8 9 13 15 17 21 25 26 26 27 28 29 29 31 LCS_GDT S 25 S 25 3 6 20 3 3 3 4 5 6 8 10 11 13 13 15 16 18 18 20 23 26 29 30 LCS_GDT N 26 N 26 3 7 14 3 3 4 6 7 7 8 10 11 13 13 15 16 18 18 20 23 25 26 28 LCS_GDT H 27 H 27 5 7 14 3 4 5 6 7 9 9 10 11 13 13 15 16 18 18 20 23 25 28 29 LCS_GDT C 28 C 28 5 8 14 3 4 5 6 7 9 9 10 11 13 14 15 16 18 18 21 23 25 28 29 LCS_GDT V 29 V 29 5 8 14 3 5 6 6 7 9 9 10 11 13 14 15 17 19 21 23 25 29 29 31 LCS_GDT E 30 E 30 5 8 14 3 5 6 6 7 9 9 10 11 13 13 15 16 18 18 21 23 25 28 31 LCS_GDT V 31 V 31 5 8 14 3 4 6 6 7 9 9 10 11 13 13 15 16 18 18 20 23 25 28 31 LCS_GDT R 32 R 32 5 8 14 3 5 6 6 7 9 9 10 11 12 13 15 16 18 18 20 23 25 26 31 LCS_GDT C 33 C 33 5 8 14 3 5 6 6 7 9 9 10 11 12 13 15 16 18 18 20 23 25 26 27 LCS_GDT S 34 S 34 5 8 13 3 4 5 6 7 8 8 10 11 12 13 14 15 16 18 19 23 25 28 29 LCS_GDT D 35 D 35 4 8 13 3 4 5 6 6 8 8 10 11 11 13 14 15 16 18 20 23 25 28 31 LCS_GDT T 36 T 36 4 5 13 3 4 4 4 5 7 8 9 11 11 13 15 17 19 21 23 24 25 29 31 LCS_GDT K 37 K 37 4 5 13 3 4 5 5 5 6 6 12 14 17 20 21 22 24 25 27 28 29 29 31 LCS_GDT Y 38 Y 38 4 5 13 3 4 5 5 5 6 12 14 16 19 20 23 23 25 26 27 28 29 29 31 LCS_GDT T 39 T 39 4 5 11 3 4 5 5 8 12 14 16 18 20 22 25 25 26 26 27 28 29 29 31 LCS_GDT L 40 L 40 4 5 11 3 4 5 5 8 12 14 16 19 22 22 25 25 26 26 27 28 29 29 31 LCS_GDT C 41 C 41 4 5 11 3 3 5 5 5 5 6 11 11 13 22 25 25 26 26 27 28 29 29 31 LCS_AVERAGE LCS_A: 30.56 ( 18.68 25.04 47.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 12 13 14 14 15 15 16 19 22 22 25 25 26 26 27 28 29 29 31 GDT PERCENT_AT 14.63 29.27 31.71 34.15 34.15 36.59 36.59 39.02 46.34 53.66 53.66 60.98 60.98 63.41 63.41 65.85 68.29 70.73 70.73 75.61 GDT RMS_LOCAL 0.18 0.59 0.74 0.90 0.90 1.36 1.36 1.84 3.44 3.65 3.65 4.08 4.08 4.38 4.38 4.70 4.92 5.31 5.31 6.15 GDT RMS_ALL_AT 17.49 17.40 17.20 17.19 17.19 16.82 16.82 16.40 11.88 11.88 11.88 11.14 11.14 10.99 10.75 10.40 10.32 10.13 10.13 9.65 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 10.332 0 0.424 0.747 14.245 0.000 0.000 14.245 LGA Q 2 Q 2 3.673 0 0.358 1.087 5.854 28.182 25.455 4.176 LGA E 3 E 3 1.877 0 0.220 1.000 4.531 55.000 32.727 4.208 LGA T 4 T 4 0.728 0 0.071 1.120 2.164 73.636 66.494 2.164 LGA R 5 R 5 1.002 0 0.041 0.778 2.700 69.545 58.182 2.700 LGA K 6 K 6 1.074 0 0.015 0.647 3.017 65.455 60.000 3.017 LGA K 7 K 7 1.230 0 0.087 0.797 2.410 65.455 56.364 1.425 LGA C 8 C 8 1.389 0 0.040 0.564 1.662 65.455 60.606 1.571 LGA T 9 T 9 1.173 0 0.043 1.070 2.606 73.636 60.779 2.034 LGA E 10 E 10 0.254 0 0.010 0.763 3.646 95.455 67.475 3.646 LGA M 11 M 11 0.891 0 0.070 1.002 3.702 81.818 65.000 3.702 LGA K 12 K 12 1.054 0 0.020 0.998 6.829 77.727 50.303 6.829 LGA K 13 K 13 0.963 0 0.024 0.602 2.560 77.727 60.404 1.639 LGA K 14 K 14 1.299 0 0.064 0.923 3.688 65.909 55.556 3.688 LGA F 15 F 15 1.450 0 0.433 0.793 3.754 45.000 52.727 1.696 LGA K 16 K 16 0.889 0 0.498 1.367 4.526 77.727 56.364 4.526 LGA N 17 N 17 4.682 0 0.385 0.861 10.008 5.000 2.500 10.008 LGA C 18 C 18 8.156 0 0.038 0.780 12.778 0.000 0.000 12.778 LGA E 19 E 19 10.388 0 0.204 0.814 16.490 0.000 0.000 16.000 LGA V 20 V 20 10.757 0 0.139 0.967 11.081 0.000 0.000 9.441 LGA R 21 R 21 13.820 0 0.041 1.123 23.254 0.000 0.000 23.254 LGA C 22 C 22 13.040 0 0.571 1.062 16.676 0.000 0.000 11.070 LGA D 23 D 23 17.336 0 0.631 1.313 23.084 0.000 0.000 23.084 LGA E 24 E 24 16.856 0 0.608 0.914 18.748 0.000 0.000 15.526 LGA S 25 S 25 22.970 0 0.600 0.942 26.369 0.000 0.000 24.736 LGA N 26 N 26 24.808 0 0.235 1.014 26.000 0.000 0.000 23.037 LGA H 27 H 27 23.612 0 0.492 1.167 28.292 0.000 0.000 28.276 LGA C 28 C 28 22.486 0 0.047 0.741 26.258 0.000 0.000 26.258 LGA V 29 V 29 17.523 0 0.074 0.967 19.675 0.000 0.000 13.496 LGA E 30 E 30 21.689 0 0.055 0.763 30.633 0.000 0.000 29.004 LGA V 31 V 31 20.714 0 0.135 0.874 24.993 0.000 0.000 18.669 LGA R 32 R 32 25.286 0 0.272 1.156 30.922 0.000 0.000 30.375 LGA C 33 C 33 26.535 0 0.528 1.131 29.221 0.000 0.000 28.153 LGA S 34 S 34 29.422 0 0.538 0.557 32.569 0.000 0.000 29.076 LGA D 35 D 35 33.758 0 0.204 1.180 37.039 0.000 0.000 37.039 LGA T 36 T 36 30.850 0 0.049 1.223 32.055 0.000 0.000 32.055 LGA K 37 K 37 26.437 0 0.191 1.578 28.566 0.000 0.000 27.734 LGA Y 38 Y 38 23.363 0 0.100 1.300 29.147 0.000 0.000 29.147 LGA T 39 T 39 17.465 0 0.079 1.160 19.945 0.000 0.000 16.744 LGA L 40 L 40 14.140 0 0.595 1.367 18.569 0.000 0.000 16.664 LGA C 41 C 41 12.867 0 0.496 1.323 14.964 0.000 0.000 14.899 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 9.124 8.992 10.071 24.945 20.267 9.401 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 16 1.84 42.073 38.728 0.827 LGA_LOCAL RMSD: 1.836 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.398 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.124 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.394178 * X + -0.860694 * Y + 0.322225 * Z + 0.322499 Y_new = -0.915606 * X + -0.398032 * Y + 0.056881 * Z + -4.493674 Z_new = 0.079299 * X + -0.317452 * Y + -0.944953 * Z + 8.473887 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.164267 -0.079382 -2.817493 [DEG: -66.7076 -4.5483 -161.4305 ] ZXZ: 1.745521 2.808247 2.896804 [DEG: 100.0110 160.9007 165.9746 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS497_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 16 1.84 38.728 9.12 REMARK ---------------------------------------------------------- MOLECULE T0955TS497_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 CB SER 1 -1.280 -6.533 7.144 1.00 2.33 C ATOM 2 OG SER 1 -0.381 -6.673 8.232 1.00 2.33 O ATOM 4 C SER 1 -0.543 -8.655 5.888 1.00 2.33 C ATOM 5 O SER 1 0.523 -8.056 5.671 1.00 2.33 O ATOM 8 N SER 1 -2.298 -8.745 7.682 1.00 2.33 N ATOM 10 CA SER 1 -1.716 -7.917 6.588 1.00 2.33 C ATOM 11 N GLN 2 -0.743 -9.934 5.518 1.00 1.74 N ATOM 13 CA GLN 2 0.343 -10.732 4.903 1.00 1.74 C ATOM 14 CB GLN 2 0.066 -12.208 5.229 1.00 1.74 C ATOM 15 CG GLN 2 1.237 -13.202 5.086 1.00 1.74 C ATOM 16 CD GLN 2 0.837 -14.638 5.372 1.00 1.74 C ATOM 17 OE1 GLN 2 0.274 -15.321 4.516 1.00 1.74 O ATOM 18 NE2 GLN 2 1.133 -15.106 6.579 1.00 1.74 N ATOM 21 C GLN 2 0.911 -10.636 3.445 1.00 1.74 C ATOM 22 O GLN 2 2.077 -10.267 3.330 1.00 1.74 O ATOM 23 N GLU 3 0.167 -10.949 2.365 1.00 1.78 N ATOM 25 CA GLU 3 0.777 -10.872 1.001 1.00 1.78 C ATOM 26 CB GLU 3 0.331 -12.092 0.157 1.00 1.78 C ATOM 27 CG GLU 3 -1.187 -12.358 0.070 1.00 1.78 C ATOM 28 CD GLU 3 -1.520 -13.568 -0.782 1.00 1.78 C ATOM 29 OE1 GLU 3 -1.591 -14.685 -0.228 1.00 1.78 O ATOM 30 OE2 GLU 3 -1.713 -13.402 -2.005 1.00 1.78 O ATOM 31 C GLU 3 0.838 -9.599 0.105 1.00 1.78 C ATOM 32 O GLU 3 1.902 -8.966 -0.015 1.00 1.78 O ATOM 33 N THR 4 -0.341 -9.160 -0.368 1.00 1.97 N ATOM 35 CA THR 4 -0.530 -7.959 -1.215 1.00 1.97 C ATOM 36 CB THR 4 -1.924 -7.946 -1.919 1.00 1.97 C ATOM 37 OG1 THR 4 -2.956 -8.237 -0.965 1.00 1.97 O ATOM 39 CG2 THR 4 -1.968 -8.972 -3.044 1.00 1.97 C ATOM 40 C THR 4 -0.404 -6.813 -0.226 1.00 1.97 C ATOM 41 O THR 4 0.144 -5.738 -0.511 1.00 1.97 O ATOM 42 N ARG 5 -0.914 -7.134 0.967 1.00 1.70 N ATOM 44 CA ARG 5 -0.952 -6.292 2.149 1.00 1.70 C ATOM 45 CB ARG 5 -1.882 -6.901 3.193 1.00 1.70 C ATOM 46 CG ARG 5 -3.361 -6.927 2.784 1.00 1.70 C ATOM 47 CD ARG 5 -4.186 -7.901 3.620 1.00 1.70 C ATOM 48 NE ARG 5 -3.856 -9.303 3.339 1.00 1.70 N ATOM 50 CZ ARG 5 -4.518 -10.359 3.814 1.00 1.70 C ATOM 51 NH1 ARG 5 -4.118 -11.581 3.485 1.00 1.70 N ATOM 54 NH2 ARG 5 -5.572 -10.212 4.611 1.00 1.70 N ATOM 57 C ARG 5 0.457 -5.999 2.689 1.00 1.70 C ATOM 58 O ARG 5 0.660 -4.940 3.269 1.00 1.70 O ATOM 59 N LYS 6 1.404 -6.944 2.527 1.00 1.61 N ATOM 61 CA LYS 6 2.820 -6.788 2.957 1.00 1.61 C ATOM 62 CB LYS 6 3.616 -8.090 2.740 1.00 1.61 C ATOM 63 CG LYS 6 4.958 -8.197 3.489 1.00 1.61 C ATOM 64 CD LYS 6 5.716 -9.461 3.094 1.00 1.61 C ATOM 65 CE LYS 6 7.158 -9.453 3.604 1.00 1.61 C ATOM 66 NZ LYS 6 7.284 -9.521 5.091 1.00 1.61 N ATOM 70 C LYS 6 3.449 -5.660 2.128 1.00 1.61 C ATOM 71 O LYS 6 4.160 -4.809 2.672 1.00 1.61 O ATOM 72 N LYS 7 3.143 -5.660 0.823 1.00 1.41 N ATOM 74 CA LYS 7 3.625 -4.652 -0.131 1.00 1.41 C ATOM 75 CB LYS 7 3.221 -5.026 -1.563 1.00 1.41 C ATOM 76 CG LYS 7 3.946 -6.240 -2.136 1.00 1.41 C ATOM 77 CD LYS 7 3.487 -6.536 -3.560 1.00 1.41 C ATOM 78 CE LYS 7 4.208 -7.741 -4.159 1.00 1.41 C ATOM 79 NZ LYS 7 5.657 -7.498 -4.427 1.00 1.41 N ATOM 83 C LYS 7 3.022 -3.292 0.252 1.00 1.41 C ATOM 84 O LYS 7 3.751 -2.299 0.351 1.00 1.41 O ATOM 85 N CYS 8 1.717 -3.294 0.564 1.00 1.43 N ATOM 87 CA CYS 8 0.963 -2.092 0.959 1.00 1.43 C ATOM 88 CB CYS 8 -0.553 -2.345 0.882 1.00 1.43 C ATOM 89 SG CYS 8 -1.362 -2.937 2.393 1.00 1.43 S ATOM 90 C CYS 8 1.353 -1.516 2.336 1.00 1.43 C ATOM 91 O CYS 8 1.609 -0.317 2.430 1.00 1.43 O ATOM 92 N THR 9 1.474 -2.381 3.360 1.00 1.65 N ATOM 94 CA THR 9 1.824 -1.979 4.743 1.00 1.65 C ATOM 95 CB THR 9 1.500 -3.107 5.811 1.00 1.65 C ATOM 96 OG1 THR 9 1.591 -2.560 7.133 1.00 1.65 O ATOM 98 CG2 THR 9 2.447 -4.311 5.704 1.00 1.65 C ATOM 99 C THR 9 3.265 -1.440 4.889 1.00 1.65 C ATOM 100 O THR 9 3.489 -0.483 5.633 1.00 1.65 O ATOM 101 N GLU 10 4.210 -2.040 4.149 1.00 1.63 N ATOM 103 CA GLU 10 5.631 -1.637 4.146 1.00 1.63 C ATOM 104 CB GLU 10 6.483 -2.673 3.401 1.00 1.63 C ATOM 105 CG GLU 10 6.798 -3.926 4.211 1.00 1.63 C ATOM 106 CD GLU 10 7.643 -4.925 3.441 1.00 1.63 C ATOM 107 OE1 GLU 10 7.062 -5.795 2.758 1.00 1.63 O ATOM 108 OE2 GLU 10 8.886 -4.841 3.520 1.00 1.63 O ATOM 109 C GLU 10 5.771 -0.241 3.510 1.00 1.63 C ATOM 110 O GLU 10 6.518 0.606 4.021 1.00 1.63 O ATOM 111 N MET 11 5.008 -0.010 2.430 1.00 1.51 N ATOM 113 CA MET 11 4.951 1.275 1.702 1.00 1.51 C ATOM 114 CG MET 11 5.012 0.430 -0.727 1.00 1.51 C ATOM 115 SD MET 11 4.100 0.260 -2.276 1.00 1.51 S ATOM 116 CE MET 11 4.800 1.606 -3.246 1.00 1.51 C ATOM 117 C MET 11 4.255 2.337 2.573 1.00 1.51 C ATOM 118 O MET 11 4.698 3.489 2.627 1.00 1.51 O ATOM 119 CB MET 11 4.203 1.111 0.373 1.00 1.51 C ATOM 120 N LYS 12 3.193 1.907 3.273 1.00 1.64 N ATOM 122 CA LYS 12 2.380 2.734 4.188 1.00 1.64 C ATOM 123 CB LYS 12 1.080 2.005 4.560 1.00 1.64 C ATOM 124 CG LYS 12 -0.008 2.134 3.499 1.00 1.64 C ATOM 125 CD LYS 12 -1.229 1.287 3.828 1.00 1.64 C ATOM 126 CE LYS 12 -2.315 1.417 2.764 1.00 1.64 C ATOM 127 NZ LYS 12 -1.952 0.787 1.458 1.00 1.64 N ATOM 131 C LYS 12 3.149 3.148 5.453 1.00 1.64 C ATOM 132 O LYS 12 2.955 4.257 5.956 1.00 1.64 O ATOM 133 N LYS 13 3.998 2.239 5.957 1.00 1.95 N ATOM 135 CA LYS 13 4.842 2.458 7.147 1.00 1.95 C ATOM 136 CB LYS 13 5.436 1.136 7.653 1.00 1.95 C ATOM 137 CG LYS 13 4.489 0.312 8.517 1.00 1.95 C ATOM 138 CD LYS 13 5.154 -0.969 8.995 1.00 1.95 C ATOM 139 CE LYS 13 4.216 -1.786 9.868 1.00 1.95 C ATOM 140 NZ LYS 13 4.856 -3.042 10.349 1.00 1.95 N ATOM 144 C LYS 13 5.957 3.492 6.901 1.00 1.95 C ATOM 145 O LYS 13 6.165 4.376 7.742 1.00 1.95 O ATOM 146 N LYS 14 6.665 3.372 5.765 1.00 2.14 N ATOM 148 CA LYS 14 7.746 4.308 5.384 1.00 2.14 C ATOM 149 CB LYS 14 8.688 3.700 4.317 1.00 2.14 C ATOM 150 CG LYS 14 8.065 3.214 2.995 1.00 2.14 C ATOM 151 CD LYS 14 9.144 2.700 2.051 1.00 2.14 C ATOM 152 CE LYS 14 8.564 2.275 0.712 1.00 2.14 C ATOM 153 NZ LYS 14 9.616 1.766 -0.212 1.00 2.14 N ATOM 157 C LYS 14 7.257 5.722 4.982 1.00 2.14 C ATOM 158 O LYS 14 7.805 6.722 5.455 1.00 2.14 O ATOM 159 N PHE 15 6.236 5.773 4.113 1.00 1.94 N ATOM 161 CA PHE 15 5.598 7.014 3.618 1.00 1.94 C ATOM 162 CB PHE 15 4.765 6.729 2.344 1.00 1.94 C ATOM 163 CG PHE 15 5.583 6.615 1.057 1.00 1.94 C ATOM 164 CD1 PHE 15 5.806 7.751 0.241 1.00 1.94 C ATOM 165 CD2 PHE 15 6.102 5.369 0.629 1.00 1.94 C ATOM 166 CE1 PHE 15 6.532 7.651 -0.978 1.00 1.94 C ATOM 167 CE2 PHE 15 6.830 5.252 -0.587 1.00 1.94 C ATOM 168 CZ PHE 15 7.045 6.398 -1.393 1.00 1.94 C ATOM 169 C PHE 15 4.742 7.767 4.654 1.00 1.94 C ATOM 170 O PHE 15 4.691 9.004 4.637 1.00 1.94 O ATOM 171 N LYS 16 4.063 6.992 5.520 1.00 1.81 N ATOM 173 CA LYS 16 3.142 7.416 6.614 1.00 1.81 C ATOM 174 CB LYS 16 3.680 8.597 7.465 1.00 1.81 C ATOM 175 CG LYS 16 4.917 8.269 8.291 1.00 1.81 C ATOM 176 CD LYS 16 5.384 9.480 9.093 1.00 1.81 C ATOM 177 CE LYS 16 6.621 9.173 9.934 1.00 1.81 C ATOM 178 NZ LYS 16 7.853 8.938 9.123 1.00 1.81 N ATOM 182 C LYS 16 1.693 7.662 6.134 1.00 1.81 C ATOM 183 O LYS 16 1.302 8.801 5.832 1.00 1.81 O ATOM 184 N ASN 17 0.934 6.561 6.020 1.00 2.33 N ATOM 186 CA ASN 17 -0.476 6.552 5.580 1.00 2.33 C ATOM 187 CB ASN 17 -0.605 5.811 4.224 1.00 2.33 C ATOM 188 CG ASN 17 -1.834 6.240 3.421 1.00 2.33 C ATOM 189 OD1 ASN 17 -2.911 5.653 3.548 1.00 2.33 O ATOM 190 ND2 ASN 17 -1.670 7.258 2.581 1.00 2.33 N ATOM 193 C ASN 17 -1.346 5.899 6.686 1.00 2.33 C ATOM 194 O ASN 17 -1.636 6.553 7.695 1.00 2.33 O ATOM 195 N CYS 18 -1.749 4.632 6.487 1.00 2.67 N ATOM 197 CA CYS 18 -2.573 3.859 7.433 1.00 2.67 C ATOM 198 CB CYS 18 -3.941 3.524 6.815 1.00 2.67 C ATOM 199 SG CYS 18 -5.131 2.759 7.949 1.00 2.67 S ATOM 200 C CYS 18 -1.839 2.557 7.775 1.00 2.67 C ATOM 201 O CYS 18 -1.126 2.010 6.927 1.00 2.67 O ATOM 202 N GLU 19 -1.993 2.091 9.022 1.00 2.42 N ATOM 204 CA GLU 19 -1.364 0.848 9.504 1.00 2.42 C ATOM 205 CB GLU 19 -0.248 1.135 10.527 1.00 2.42 C ATOM 206 CG GLU 19 0.998 1.802 9.950 1.00 2.42 C ATOM 207 CD GLU 19 2.061 2.066 11.000 1.00 2.42 C ATOM 208 OE1 GLU 19 2.047 3.162 11.599 1.00 2.42 O ATOM 209 OE2 GLU 19 2.911 1.179 11.224 1.00 2.42 O ATOM 210 C GLU 19 -2.391 -0.112 10.117 1.00 2.42 C ATOM 211 O GLU 19 -3.197 0.289 10.970 1.00 2.42 O ATOM 212 N VAL 20 -2.374 -1.362 9.635 1.00 2.74 N ATOM 214 CA VAL 20 -3.252 -2.453 10.103 1.00 2.74 C ATOM 215 CB VAL 20 -4.057 -3.144 8.930 1.00 2.74 C ATOM 216 CG1 VAL 20 -5.254 -2.286 8.556 1.00 2.74 C ATOM 217 CG2 VAL 20 -3.176 -3.378 7.680 1.00 2.74 C ATOM 218 C VAL 20 -2.386 -3.471 10.871 1.00 2.74 C ATOM 219 O VAL 20 -1.235 -3.714 10.482 1.00 2.74 O ATOM 220 N ARG 21 -2.928 -4.034 11.958 1.00 3.25 N ATOM 222 CA ARG 21 -2.195 -4.998 12.795 1.00 3.25 C ATOM 223 CB ARG 21 -2.184 -4.546 14.267 1.00 3.25 C ATOM 224 CG ARG 21 -1.365 -3.283 14.545 1.00 3.25 C ATOM 225 CD ARG 21 -1.376 -2.899 16.024 1.00 3.25 C ATOM 226 NE ARG 21 -2.683 -2.414 16.478 1.00 3.25 N ATOM 228 CZ ARG 21 -2.959 -1.992 17.712 1.00 3.25 C ATOM 229 NH1 ARG 21 -4.186 -1.576 18.000 1.00 3.25 N ATOM 232 NH2 ARG 21 -2.028 -1.977 18.659 1.00 3.25 N ATOM 235 C ARG 21 -2.684 -6.449 12.705 1.00 3.25 C ATOM 236 O ARG 21 -3.886 -6.723 12.819 1.00 3.25 O ATOM 237 N CYS 22 -1.733 -7.344 12.403 1.00 4.37 N ATOM 239 CA CYS 22 -1.926 -8.803 12.306 1.00 4.37 C ATOM 240 CB CYS 22 -1.802 -9.287 10.851 1.00 4.37 C ATOM 241 SG CYS 22 -2.186 -11.038 10.610 1.00 4.37 S ATOM 242 C CYS 22 -0.787 -9.371 13.167 1.00 4.37 C ATOM 243 O CYS 22 -1.014 -10.225 14.032 1.00 4.37 O ATOM 244 N ASP 23 0.432 -8.870 12.902 1.00 4.75 N ATOM 246 CA ASP 23 1.694 -9.210 13.592 1.00 4.75 C ATOM 247 CB ASP 23 2.253 -10.580 13.139 1.00 4.75 C ATOM 248 CG ASP 23 3.100 -11.262 14.217 1.00 4.75 C ATOM 249 OD1 ASP 23 4.332 -11.053 14.235 1.00 4.75 O ATOM 250 OD2 ASP 23 2.534 -12.008 15.048 1.00 4.75 O ATOM 251 C ASP 23 2.690 -8.083 13.241 1.00 4.75 C ATOM 252 O ASP 23 3.647 -7.842 13.988 1.00 4.75 O ATOM 253 N GLU 24 2.432 -7.401 12.112 1.00 5.26 N ATOM 255 CA GLU 24 3.249 -6.283 11.602 1.00 5.26 C ATOM 256 CB GLU 24 3.309 -6.305 10.067 1.00 5.26 C ATOM 257 CG GLU 24 4.292 -7.298 9.478 1.00 5.26 C ATOM 258 CD GLU 24 4.276 -7.311 7.960 1.00 5.26 C ATOM 259 OE1 GLU 24 5.042 -6.535 7.348 1.00 5.26 O ATOM 260 OE2 GLU 24 3.501 -8.099 7.378 1.00 5.26 O ATOM 261 C GLU 24 2.737 -4.911 12.082 1.00 5.26 C ATOM 262 O GLU 24 1.636 -4.482 11.702 1.00 5.26 O ATOM 263 N SER 25 3.517 -4.273 12.965 1.00 6.05 N ATOM 265 CA SER 25 3.214 -2.947 13.535 1.00 6.05 C ATOM 266 CB SER 25 2.409 -3.073 14.846 1.00 6.05 C ATOM 267 OG SER 25 3.064 -3.913 15.784 1.00 6.05 O ATOM 269 C SER 25 4.507 -2.143 13.762 1.00 6.05 C ATOM 270 O SER 25 5.361 -2.539 14.569 1.00 6.05 O ATOM 271 N ASN 26 4.645 -1.037 13.010 1.00 7.34 N ATOM 273 CA ASN 26 5.784 -0.076 13.024 1.00 7.34 C ATOM 274 CB ASN 26 5.602 0.987 14.130 1.00 7.34 C ATOM 275 CG ASN 26 4.387 1.881 13.900 1.00 7.34 C ATOM 276 OD1 ASN 26 3.283 1.577 14.355 1.00 7.34 O ATOM 277 ND2 ASN 26 4.593 2.997 13.207 1.00 7.34 N ATOM 280 C ASN 26 7.231 -0.628 13.031 1.00 7.34 C ATOM 281 O ASN 26 7.955 -0.451 12.043 1.00 7.34 O ATOM 282 N HIS 27 7.632 -1.280 14.134 1.00 5.94 N ATOM 284 CA HIS 27 8.978 -1.866 14.305 1.00 5.94 C ATOM 285 CG HIS 27 8.708 -1.588 16.852 1.00 5.94 C ATOM 286 CD2 HIS 27 8.141 -0.667 17.669 1.00 5.94 C ATOM 287 ND1 HIS 27 8.318 -2.818 17.337 1.00 5.94 N ATOM 289 CE1 HIS 27 7.550 -2.650 18.400 1.00 5.94 C ATOM 290 NE2 HIS 27 7.428 -1.353 18.622 1.00 5.94 N ATOM 292 C HIS 27 9.001 -3.399 14.147 1.00 5.94 C ATOM 293 O HIS 27 8.116 -4.088 14.668 1.00 5.94 O ATOM 294 CB HIS 27 9.609 -1.430 15.656 1.00 5.94 C ATOM 295 N CYS 28 10.025 -3.910 13.437 1.00 5.31 N ATOM 297 CA CYS 28 10.269 -5.348 13.125 1.00 5.31 C ATOM 298 CB CYS 28 10.710 -6.141 14.377 1.00 5.31 C ATOM 299 SG CYS 28 11.273 -7.837 14.066 1.00 5.31 S ATOM 300 C CYS 28 9.086 -6.047 12.416 1.00 5.31 C ATOM 301 O CYS 28 7.949 -5.996 12.906 1.00 5.31 O ATOM 302 N VAL 29 9.365 -6.694 11.275 1.00 4.87 N ATOM 304 CA VAL 29 8.330 -7.383 10.478 1.00 4.87 C ATOM 305 CB VAL 29 8.227 -6.810 9.002 1.00 4.87 C ATOM 306 CG1 VAL 29 7.540 -5.453 9.019 1.00 4.87 C ATOM 307 CG2 VAL 29 9.616 -6.684 8.336 1.00 4.87 C ATOM 308 C VAL 29 8.361 -8.927 10.449 1.00 4.87 C ATOM 309 O VAL 29 9.399 -9.542 10.167 1.00 4.87 O ATOM 310 N GLU 30 7.211 -9.515 10.807 1.00 4.15 N ATOM 312 CA GLU 30 6.941 -10.968 10.823 1.00 4.15 C ATOM 313 CB GLU 30 6.777 -11.496 12.257 1.00 4.15 C ATOM 314 CG GLU 30 8.053 -11.474 13.095 1.00 4.15 C ATOM 315 CD GLU 30 7.839 -12.006 14.500 1.00 4.15 C ATOM 316 OE1 GLU 30 8.002 -13.227 14.708 1.00 4.15 O ATOM 317 OE2 GLU 30 7.512 -11.203 15.399 1.00 4.15 O ATOM 318 C GLU 30 5.612 -11.088 10.065 1.00 4.15 C ATOM 319 O GLU 30 4.736 -10.235 10.253 1.00 4.15 O ATOM 320 N VAL 31 5.431 -12.138 9.251 1.00 4.10 N ATOM 322 CA VAL 31 4.185 -12.278 8.472 1.00 4.10 C ATOM 323 CB VAL 31 4.463 -12.376 6.917 1.00 4.10 C ATOM 324 CG1 VAL 31 4.791 -11.002 6.364 1.00 4.10 C ATOM 325 CG2 VAL 31 5.611 -13.361 6.598 1.00 4.10 C ATOM 326 C VAL 31 3.178 -13.363 8.911 1.00 4.10 C ATOM 327 O VAL 31 3.517 -14.549 9.036 1.00 4.10 O ATOM 328 N ARG 32 1.956 -12.890 9.192 1.00 3.68 N ATOM 330 CA ARG 32 0.780 -13.678 9.605 1.00 3.68 C ATOM 331 CB ARG 32 0.459 -13.495 11.098 1.00 3.68 C ATOM 332 CG ARG 32 1.449 -14.179 12.040 1.00 3.68 C ATOM 333 CD ARG 32 0.925 -14.264 13.470 1.00 3.68 C ATOM 334 NE ARG 32 -0.150 -15.250 13.621 1.00 3.68 N ATOM 336 CZ ARG 32 -0.608 -15.714 14.784 1.00 3.68 C ATOM 337 NH1 ARG 32 -1.588 -16.608 14.790 1.00 3.68 N ATOM 340 NH2 ARG 32 -0.103 -15.295 15.940 1.00 3.68 N ATOM 343 C ARG 32 -0.406 -13.211 8.754 1.00 3.68 C ATOM 344 O ARG 32 -0.473 -12.024 8.408 1.00 3.68 O ATOM 345 N CYS 33 -1.325 -14.126 8.417 1.00 3.27 N ATOM 347 CA CYS 33 -2.513 -13.801 7.605 1.00 3.27 C ATOM 348 CB CYS 33 -2.657 -14.777 6.427 1.00 3.27 C ATOM 349 SG CYS 33 -2.731 -16.525 6.894 1.00 3.27 S ATOM 350 C CYS 33 -3.789 -13.779 8.466 1.00 3.27 C ATOM 351 O CYS 33 -4.222 -14.814 8.993 1.00 3.27 O ATOM 352 N SER 34 -4.343 -12.562 8.630 1.00 3.98 N ATOM 354 CA SER 34 -5.559 -12.232 9.417 1.00 3.98 C ATOM 355 CB SER 34 -6.851 -12.584 8.649 1.00 3.98 C ATOM 356 OG SER 34 -6.931 -11.871 7.426 1.00 3.98 O ATOM 358 C SER 34 -5.594 -12.773 10.866 1.00 3.98 C ATOM 359 O SER 34 -5.875 -13.960 11.095 1.00 3.98 O ATOM 360 N ASP 35 -5.246 -11.896 11.819 1.00 4.31 N ATOM 362 CA ASP 35 -5.208 -12.200 13.261 1.00 4.31 C ATOM 363 CB ASP 35 -3.812 -11.856 13.836 1.00 4.31 C ATOM 364 CG ASP 35 -3.508 -12.576 15.153 1.00 4.31 C ATOM 365 OD1 ASP 35 -2.970 -13.703 15.112 1.00 4.31 O ATOM 366 OD2 ASP 35 -3.798 -12.006 16.228 1.00 4.31 O ATOM 367 C ASP 35 -6.327 -11.396 13.963 1.00 4.31 C ATOM 368 O ASP 35 -7.308 -11.986 14.432 1.00 4.31 O ATOM 369 N THR 36 -6.163 -10.065 14.023 1.00 6.88 N ATOM 371 CA THR 36 -7.128 -9.128 14.630 1.00 6.88 C ATOM 372 CB THR 36 -6.499 -8.304 15.841 1.00 6.88 C ATOM 373 OG1 THR 36 -7.407 -7.278 16.264 1.00 6.88 O ATOM 375 CG2 THR 36 -5.129 -7.689 15.495 1.00 6.88 C ATOM 376 C THR 36 -7.707 -8.215 13.528 1.00 6.88 C ATOM 377 O THR 36 -6.948 -7.647 12.730 1.00 6.88 O ATOM 378 N LYS 37 -9.049 -8.125 13.466 1.00 5.92 N ATOM 380 CA LYS 37 -9.830 -7.322 12.480 1.00 5.92 C ATOM 381 CB LYS 37 -9.593 -5.803 12.657 1.00 5.92 C ATOM 382 CG LYS 37 -10.157 -5.219 13.946 1.00 5.92 C ATOM 383 CD LYS 37 -9.915 -3.721 14.024 1.00 5.92 C ATOM 384 CE LYS 37 -10.494 -3.134 15.301 1.00 5.92 C ATOM 385 NZ LYS 37 -10.280 -1.662 15.382 1.00 5.92 N ATOM 389 C LYS 37 -9.590 -7.729 11.010 1.00 5.92 C ATOM 390 O LYS 37 -8.682 -8.524 10.734 1.00 5.92 O ATOM 391 N TYR 38 -10.407 -7.202 10.084 1.00 4.05 N ATOM 393 CA TYR 38 -10.283 -7.484 8.643 1.00 4.05 C ATOM 394 CB TYR 38 -11.654 -7.329 7.937 1.00 4.05 C ATOM 395 CG TYR 38 -12.761 -8.302 8.360 1.00 4.05 C ATOM 396 CD1 TYR 38 -13.655 -7.983 9.412 1.00 4.05 C ATOM 397 CE1 TYR 38 -14.706 -8.867 9.784 1.00 4.05 C ATOM 398 CD2 TYR 38 -12.948 -9.536 7.687 1.00 4.05 C ATOM 399 CE2 TYR 38 -13.997 -10.425 8.051 1.00 4.05 C ATOM 400 CZ TYR 38 -14.867 -10.082 9.097 1.00 4.05 C ATOM 401 OH TYR 38 -15.882 -10.943 9.450 1.00 4.05 O ATOM 403 C TYR 38 -9.239 -6.542 8.013 1.00 4.05 C ATOM 404 O TYR 38 -9.322 -5.316 8.180 1.00 4.05 O ATOM 405 N THR 39 -8.247 -7.131 7.329 1.00 3.55 N ATOM 407 CA THR 39 -7.151 -6.390 6.677 1.00 3.55 C ATOM 408 CB THR 39 -5.725 -6.802 7.258 1.00 3.55 C ATOM 409 OG1 THR 39 -4.686 -6.123 6.541 1.00 3.55 O ATOM 411 CG2 THR 39 -5.490 -8.329 7.210 1.00 3.55 C ATOM 412 C THR 39 -7.189 -6.459 5.135 1.00 3.55 C ATOM 413 O THR 39 -7.300 -7.549 4.555 1.00 3.55 O ATOM 414 N LEU 40 -7.143 -5.278 4.504 1.00 5.64 N ATOM 416 CA LEU 40 -7.146 -5.110 3.040 1.00 5.64 C ATOM 417 CB LEU 40 -8.505 -4.548 2.534 1.00 5.64 C ATOM 418 CG LEU 40 -9.330 -3.381 3.135 1.00 5.64 C ATOM 419 CD1 LEU 40 -10.147 -2.735 2.029 1.00 5.64 C ATOM 420 CD2 LEU 40 -10.245 -3.830 4.286 1.00 5.64 C ATOM 421 C LEU 40 -5.973 -4.207 2.619 1.00 5.64 C ATOM 422 O LEU 40 -5.246 -4.529 1.671 1.00 5.64 O ATOM 423 N CYS 41 -5.817 -3.082 3.335 1.00 4.79 N ATOM 425 CA CYS 41 -4.759 -2.082 3.109 1.00 4.79 C ATOM 426 CB CYS 41 -5.339 -0.812 2.464 1.00 4.79 C ATOM 427 SG CYS 41 -6.732 -0.069 3.354 1.00 4.79 S ATOM 428 C CYS 41 -4.073 -1.732 4.428 1.00 4.79 C ATOM 429 O CYS 41 -4.765 -1.736 5.468 1.00 4.79 O ATOM 430 OXT CYS 41 -2.854 -1.461 4.409 1.00 4.79 O TER END