####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS497_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 1 - 25 4.81 12.89 LONGEST_CONTINUOUS_SEGMENT: 25 2 - 26 4.83 12.89 LCS_AVERAGE: 52.59 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 1.57 16.27 LCS_AVERAGE: 23.97 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 3 - 15 0.99 16.92 LCS_AVERAGE: 18.98 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 25 0 3 3 4 4 4 5 8 8 10 15 15 17 21 23 25 28 29 30 30 LCS_GDT Q 2 Q 2 7 15 25 0 4 5 8 11 12 15 15 17 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT E 3 E 3 13 15 25 6 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT T 4 T 4 13 15 25 6 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT R 5 R 5 13 15 25 6 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT K 6 K 6 13 15 25 6 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT K 7 K 7 13 15 25 6 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT C 8 C 8 13 15 25 6 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT T 9 T 9 13 15 25 5 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT E 10 E 10 13 15 25 5 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT M 11 M 11 13 15 25 5 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT K 12 K 12 13 15 25 5 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT K 13 K 13 13 15 25 5 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT K 14 K 14 13 15 25 5 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT F 15 F 15 13 15 25 4 9 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT K 16 K 16 12 15 25 4 5 9 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT N 17 N 17 3 7 25 1 3 4 6 7 7 9 14 18 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT C 18 C 18 5 7 25 1 5 5 6 7 7 7 14 18 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT E 19 E 19 5 7 25 4 5 5 6 7 7 10 14 18 20 22 24 25 26 27 27 28 29 30 30 LCS_GDT V 20 V 20 5 7 25 4 5 5 6 7 7 9 14 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT R 21 R 21 5 7 25 4 5 5 6 7 7 10 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT C 22 C 22 5 7 25 4 5 5 6 7 7 7 10 15 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT D 23 D 23 5 7 25 3 3 5 6 7 7 7 11 15 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT E 24 E 24 3 5 25 3 3 3 4 5 8 10 12 15 19 21 24 25 26 27 27 28 29 30 31 LCS_GDT S 25 S 25 3 5 25 3 3 3 5 6 8 8 9 11 14 16 18 25 26 27 27 28 29 30 31 LCS_GDT N 26 N 26 3 7 25 3 3 4 5 6 7 9 10 11 14 18 19 23 26 27 27 28 29 30 31 LCS_GDT H 27 H 27 4 8 24 3 4 4 5 7 8 9 10 11 13 15 18 21 24 25 26 27 28 30 31 LCS_GDT C 28 C 28 7 8 24 3 6 6 8 8 8 9 11 14 17 20 23 25 26 27 27 28 29 30 31 LCS_GDT V 29 V 29 7 8 22 3 6 6 8 8 8 9 10 11 12 18 22 25 26 27 27 28 29 30 31 LCS_GDT E 30 E 30 7 8 14 3 5 6 8 8 8 9 16 18 20 22 24 25 26 27 27 28 29 30 31 LCS_GDT V 31 V 31 7 8 14 3 6 6 8 8 8 9 10 11 11 11 12 16 18 20 21 25 27 29 31 LCS_GDT R 32 R 32 7 8 14 3 6 6 8 8 8 9 10 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT C 33 C 33 7 8 14 3 6 6 8 8 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT S 34 S 34 7 8 14 3 6 6 8 8 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT D 35 D 35 4 8 14 3 4 5 8 8 8 9 10 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT T 36 T 36 4 6 14 3 4 4 6 7 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT K 37 K 37 5 6 14 4 6 6 7 7 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT Y 38 Y 38 5 6 14 4 6 6 7 7 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT T 39 T 39 5 6 14 4 6 6 7 7 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT L 40 L 40 5 6 12 4 6 6 7 7 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_GDT C 41 C 41 5 6 12 3 6 6 7 7 8 10 11 12 15 16 16 18 21 22 24 26 27 29 31 LCS_AVERAGE LCS_A: 31.85 ( 18.98 23.97 52.59 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 10 12 13 14 14 15 16 18 20 22 24 25 26 27 27 28 29 30 31 GDT PERCENT_AT 14.63 24.39 29.27 31.71 34.15 34.15 36.59 39.02 43.90 48.78 53.66 58.54 60.98 63.41 65.85 65.85 68.29 70.73 73.17 75.61 GDT RMS_LOCAL 0.29 0.62 0.79 0.99 1.17 1.17 1.57 3.02 3.41 3.74 3.95 4.26 4.41 4.63 4.85 4.85 5.10 5.29 5.57 6.86 GDT RMS_ALL_AT 17.04 16.86 17.02 16.92 16.67 16.67 16.27 13.52 12.94 12.53 12.62 12.63 12.69 12.77 12.90 12.90 12.96 13.04 13.17 10.17 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 10.588 0 0.547 0.944 14.369 0.000 0.000 14.369 LGA Q 2 Q 2 4.228 0 0.315 1.366 6.292 17.727 12.929 3.152 LGA E 3 E 3 2.607 0 0.193 1.235 4.081 44.091 30.303 1.948 LGA T 4 T 4 1.388 0 0.012 0.025 3.835 60.909 47.273 3.835 LGA R 5 R 5 3.602 0 0.028 0.709 9.643 16.818 6.281 9.643 LGA K 6 K 6 2.515 0 0.074 0.935 11.092 49.091 23.838 11.092 LGA K 7 K 7 1.693 0 0.053 0.844 4.204 52.273 33.939 3.485 LGA C 8 C 8 3.615 0 0.029 0.044 6.442 18.636 12.727 6.442 LGA T 9 T 9 3.109 0 0.044 0.079 5.361 33.636 20.260 4.908 LGA E 10 E 10 1.323 0 0.026 0.208 6.264 65.909 34.141 6.264 LGA M 11 M 11 2.682 0 0.066 0.946 5.277 35.909 21.364 3.538 LGA K 12 K 12 2.752 0 0.024 0.641 9.827 38.636 18.384 9.827 LGA K 13 K 13 2.123 0 0.040 0.604 6.307 48.182 24.040 6.060 LGA K 14 K 14 3.162 0 0.026 1.009 4.150 24.545 26.869 1.783 LGA F 15 F 15 3.072 0 0.490 1.448 5.460 15.909 12.727 5.071 LGA K 16 K 16 1.355 0 0.515 1.231 4.824 58.636 36.566 4.824 LGA N 17 N 17 5.647 0 0.661 0.733 10.970 2.727 1.364 10.970 LGA C 18 C 18 9.564 0 0.679 0.846 12.075 0.000 0.000 12.075 LGA E 19 E 19 7.780 0 0.205 0.836 8.423 0.000 0.000 6.539 LGA V 20 V 20 7.806 0 0.110 0.230 9.865 0.000 0.000 8.562 LGA R 21 R 21 5.568 0 0.053 1.378 7.420 0.000 0.992 7.420 LGA C 22 C 22 6.819 0 0.665 0.752 8.957 0.000 0.000 8.957 LGA D 23 D 23 7.555 0 0.637 1.156 10.160 0.000 0.000 8.892 LGA E 24 E 24 7.516 0 0.503 0.985 11.107 0.000 0.000 7.184 LGA S 25 S 25 11.356 0 0.560 0.882 13.827 0.000 0.000 9.956 LGA N 26 N 26 15.226 0 0.156 1.321 17.414 0.000 0.000 15.501 LGA H 27 H 27 16.701 0 0.574 0.712 24.369 0.000 0.000 24.369 LGA C 28 C 28 11.537 0 0.102 0.716 13.447 0.000 0.000 11.019 LGA V 29 V 29 8.242 0 0.059 0.973 12.330 0.000 0.000 12.156 LGA E 30 E 30 4.322 0 0.029 0.796 7.640 1.818 5.051 4.940 LGA V 31 V 31 11.248 0 0.049 0.919 14.871 0.000 0.000 14.871 LGA R 32 R 32 15.832 0 0.203 1.152 19.519 0.000 0.000 15.518 LGA C 33 C 33 22.205 0 0.483 0.798 23.838 0.000 0.000 23.005 LGA S 34 S 34 27.826 0 0.047 0.656 29.466 0.000 0.000 29.466 LGA D 35 D 35 28.781 0 0.262 1.110 32.028 0.000 0.000 30.061 LGA T 36 T 36 30.191 0 0.640 1.413 33.993 0.000 0.000 33.993 LGA K 37 K 37 26.503 0 0.235 1.632 27.603 0.000 0.000 26.203 LGA Y 38 Y 38 25.099 0 0.050 1.215 29.857 0.000 0.000 29.857 LGA T 39 T 39 20.340 0 0.132 1.157 23.238 0.000 0.000 19.171 LGA L 40 L 40 19.919 0 0.263 0.648 20.142 0.000 0.000 19.882 LGA C 41 C 41 21.050 0 0.213 0.853 23.036 0.000 0.000 20.325 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 9.991 9.772 11.151 14.279 9.001 4.035 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 16 3.02 40.244 37.219 0.513 LGA_LOCAL RMSD: 3.017 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.517 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.991 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.769101 * X + -0.470450 * Y + -0.432621 * Z + -2.887116 Y_new = -0.120408 * X + -0.558118 * Y + 0.820979 * Z + -3.395353 Z_new = -0.627683 * X + 0.683506 * Y + 0.372603 * Z + 2.435686 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.986297 0.678573 1.071696 [DEG: -171.1022 38.8794 61.4036 ] ZXZ: -2.656612 1.188984 -0.742850 [DEG: -152.2127 68.1237 -42.5621 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS497_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 16 3.02 37.219 9.99 REMARK ---------------------------------------------------------- MOLECULE T0955TS497_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 CB SER 1 -4.511 -4.512 2.753 1.00 2.19 C ATOM 2 OG SER 1 -3.314 -3.808 2.460 1.00 2.19 O ATOM 4 C SER 1 -3.375 -6.774 2.824 1.00 2.19 C ATOM 5 O SER 1 -2.281 -6.235 3.055 1.00 2.19 O ATOM 8 N SER 1 -5.826 -6.605 2.414 1.00 2.19 N ATOM 10 CA SER 1 -4.506 -5.953 2.179 1.00 2.19 C ATOM 11 N GLN 2 -3.598 -8.077 3.056 1.00 2.16 N ATOM 13 CA GLN 2 -2.576 -8.887 3.748 1.00 2.16 C ATOM 14 CB GLN 2 -3.236 -10.073 4.459 1.00 2.16 C ATOM 15 CG GLN 2 -4.285 -9.733 5.558 1.00 2.16 C ATOM 16 CD GLN 2 -3.692 -9.305 6.908 1.00 2.16 C ATOM 17 OE1 GLN 2 -2.968 -10.062 7.557 1.00 2.16 O ATOM 18 NE2 GLN 2 -4.012 -8.087 7.330 1.00 2.16 N ATOM 21 C GLN 2 -1.205 -9.339 3.185 1.00 2.16 C ATOM 22 O GLN 2 -0.208 -9.046 3.839 1.00 2.16 O ATOM 23 N GLU 3 -1.100 -10.064 2.060 1.00 2.03 N ATOM 25 CA GLU 3 0.256 -10.443 1.577 1.00 2.03 C ATOM 26 CB GLU 3 0.245 -11.863 0.960 1.00 2.03 C ATOM 27 CG GLU 3 -0.815 -12.153 -0.119 1.00 2.03 C ATOM 28 CD GLU 3 -0.745 -13.579 -0.631 1.00 2.03 C ATOM 29 OE1 GLU 3 -1.427 -14.454 -0.055 1.00 2.03 O ATOM 30 OE2 GLU 3 -0.011 -13.827 -1.611 1.00 2.03 O ATOM 31 C GLU 3 1.120 -9.469 0.724 1.00 2.03 C ATOM 32 O GLU 3 2.136 -8.937 1.209 1.00 2.03 O ATOM 33 N THR 4 0.606 -9.140 -0.472 1.00 2.10 N ATOM 35 CA THR 4 1.240 -8.234 -1.451 1.00 2.10 C ATOM 36 CB THR 4 0.740 -8.510 -2.932 1.00 2.10 C ATOM 37 OG1 THR 4 1.330 -7.565 -3.835 1.00 2.10 O ATOM 39 CG2 THR 4 -0.799 -8.461 -3.055 1.00 2.10 C ATOM 40 C THR 4 1.084 -6.766 -1.037 1.00 2.10 C ATOM 41 O THR 4 2.035 -5.973 -1.092 1.00 2.10 O ATOM 42 N ARG 5 -0.148 -6.434 -0.640 1.00 1.84 N ATOM 44 CA ARG 5 -0.514 -5.096 -0.200 1.00 1.84 C ATOM 45 CB ARG 5 -2.033 -4.887 -0.237 1.00 1.84 C ATOM 46 CG ARG 5 -2.472 -3.470 -0.667 1.00 1.84 C ATOM 47 CD ARG 5 -3.801 -3.454 -1.425 1.00 1.84 C ATOM 48 NE ARG 5 -4.951 -3.813 -0.592 1.00 1.84 N ATOM 50 CZ ARG 5 -6.225 -3.770 -0.983 1.00 1.84 C ATOM 51 NH1 ARG 5 -7.181 -4.122 -0.134 1.00 1.84 N ATOM 54 NH2 ARG 5 -6.557 -3.370 -2.207 1.00 1.84 N ATOM 57 C ARG 5 0.137 -4.732 1.144 1.00 1.84 C ATOM 58 O ARG 5 0.489 -3.577 1.322 1.00 1.84 O ATOM 59 N LYS 6 0.323 -5.701 2.057 1.00 1.87 N ATOM 61 CA LYS 6 0.970 -5.444 3.366 1.00 1.87 C ATOM 62 CB LYS 6 0.766 -6.584 4.361 1.00 1.87 C ATOM 63 CG LYS 6 -0.164 -6.239 5.520 1.00 1.87 C ATOM 64 CD LYS 6 -0.176 -7.336 6.574 1.00 1.87 C ATOM 65 CE LYS 6 -1.016 -6.935 7.775 1.00 1.87 C ATOM 66 NZ LYS 6 -1.038 -7.998 8.817 1.00 1.87 N ATOM 70 C LYS 6 2.460 -5.099 3.273 1.00 1.87 C ATOM 71 O LYS 6 2.935 -4.269 4.053 1.00 1.87 O ATOM 72 N LYS 7 3.193 -5.747 2.352 1.00 1.63 N ATOM 74 CA LYS 7 4.620 -5.443 2.137 1.00 1.63 C ATOM 75 CB LYS 7 5.339 -6.500 1.265 1.00 1.63 C ATOM 76 CG LYS 7 4.723 -6.890 -0.085 1.00 1.63 C ATOM 77 CD LYS 7 5.610 -7.888 -0.816 1.00 1.63 C ATOM 78 CE LYS 7 5.055 -8.225 -2.191 1.00 1.63 C ATOM 79 NZ LYS 7 5.918 -9.202 -2.912 1.00 1.63 N ATOM 83 C LYS 7 4.677 -4.018 1.548 1.00 1.63 C ATOM 84 O LYS 7 5.543 -3.217 1.914 1.00 1.63 O ATOM 85 N CYS 8 3.677 -3.711 0.706 1.00 1.76 N ATOM 87 CA CYS 8 3.483 -2.397 0.061 1.00 1.76 C ATOM 88 CB CYS 8 2.407 -2.505 -1.029 1.00 1.76 C ATOM 89 SG CYS 8 2.196 -1.022 -2.050 1.00 1.76 S ATOM 90 C CYS 8 3.074 -1.340 1.117 1.00 1.76 C ATOM 91 O CYS 8 3.606 -0.224 1.114 1.00 1.76 O ATOM 92 N THR 9 2.169 -1.735 2.031 1.00 1.87 N ATOM 94 CA THR 9 1.637 -0.899 3.134 1.00 1.87 C ATOM 95 CB THR 9 0.368 -1.544 3.818 1.00 1.87 C ATOM 96 OG1 THR 9 -0.550 -1.970 2.806 1.00 1.87 O ATOM 98 CG2 THR 9 -0.370 -0.530 4.716 1.00 1.87 C ATOM 99 C THR 9 2.738 -0.617 4.179 1.00 1.87 C ATOM 100 O THR 9 2.771 0.474 4.744 1.00 1.87 O ATOM 101 N GLU 10 3.623 -1.600 4.410 1.00 1.57 N ATOM 103 CA GLU 10 4.750 -1.510 5.365 1.00 1.57 C ATOM 104 CB GLU 10 5.448 -2.877 5.472 1.00 1.57 C ATOM 105 CG GLU 10 6.045 -3.203 6.847 1.00 1.57 C ATOM 106 CD GLU 10 6.718 -4.562 6.887 1.00 1.57 C ATOM 107 OE1 GLU 10 7.932 -4.635 6.602 1.00 1.57 O ATOM 108 OE2 GLU 10 6.033 -5.557 7.205 1.00 1.57 O ATOM 109 C GLU 10 5.724 -0.412 4.873 1.00 1.57 C ATOM 110 O GLU 10 6.270 0.352 5.681 1.00 1.57 O ATOM 111 N MET 11 5.897 -0.343 3.543 1.00 1.59 N ATOM 113 CA MET 11 6.736 0.659 2.850 1.00 1.59 C ATOM 114 CG MET 11 7.672 -0.993 1.062 1.00 1.59 C ATOM 115 SD MET 11 9.462 -0.921 1.342 1.00 1.59 S ATOM 116 CE MET 11 10.064 -0.636 -0.327 1.00 1.59 C ATOM 117 C MET 11 6.046 2.033 2.981 1.00 1.59 C ATOM 118 O MET 11 6.706 3.057 3.194 1.00 1.59 O ATOM 119 CB MET 11 6.894 0.299 1.362 1.00 1.59 C ATOM 120 N LYS 12 4.709 2.013 2.856 1.00 1.88 N ATOM 122 CA LYS 12 3.823 3.189 2.970 1.00 1.88 C ATOM 123 CB LYS 12 2.402 2.840 2.492 1.00 1.88 C ATOM 124 CG LYS 12 2.259 2.701 0.982 1.00 1.88 C ATOM 125 CD LYS 12 0.827 2.374 0.591 1.00 1.88 C ATOM 126 CE LYS 12 0.682 2.242 -0.917 1.00 1.88 C ATOM 127 NZ LYS 12 -0.717 1.929 -1.315 1.00 1.88 N ATOM 131 C LYS 12 3.766 3.714 4.415 1.00 1.88 C ATOM 132 O LYS 12 3.712 4.928 4.630 1.00 1.88 O ATOM 133 N LYS 13 3.789 2.780 5.381 1.00 1.99 N ATOM 135 CA LYS 13 3.738 3.048 6.835 1.00 1.99 C ATOM 136 CB LYS 13 3.476 1.757 7.624 1.00 1.99 C ATOM 137 CG LYS 13 2.017 1.325 7.666 1.00 1.99 C ATOM 138 CD LYS 13 1.844 0.045 8.469 1.00 1.99 C ATOM 139 CE LYS 13 0.388 -0.386 8.514 1.00 1.99 C ATOM 140 NZ LYS 13 0.202 -1.638 9.299 1.00 1.99 N ATOM 144 C LYS 13 4.998 3.744 7.359 1.00 1.99 C ATOM 145 O LYS 13 4.895 4.651 8.192 1.00 1.99 O ATOM 146 N LYS 14 6.174 3.314 6.872 1.00 1.73 N ATOM 148 CA LYS 14 7.463 3.918 7.253 1.00 1.73 C ATOM 149 CB LYS 14 8.671 3.038 6.849 1.00 1.73 C ATOM 150 CG LYS 14 8.938 2.813 5.352 1.00 1.73 C ATOM 151 CD LYS 14 10.247 2.061 5.138 1.00 1.73 C ATOM 152 CE LYS 14 10.790 2.227 3.719 1.00 1.73 C ATOM 153 NZ LYS 14 9.932 1.623 2.660 1.00 1.73 N ATOM 157 C LYS 14 7.537 5.343 6.667 1.00 1.73 C ATOM 158 O LYS 14 8.088 6.250 7.298 1.00 1.73 O ATOM 159 N PHE 15 6.990 5.500 5.450 1.00 1.96 N ATOM 161 CA PHE 15 6.915 6.784 4.724 1.00 1.96 C ATOM 162 CB PHE 15 6.561 6.532 3.230 1.00 1.96 C ATOM 163 CG PHE 15 7.023 7.627 2.260 1.00 1.96 C ATOM 164 CD1 PHE 15 6.177 8.715 1.939 1.00 1.96 C ATOM 165 CD2 PHE 15 8.292 7.552 1.636 1.00 1.96 C ATOM 166 CE1 PHE 15 6.585 9.714 1.011 1.00 1.96 C ATOM 167 CE2 PHE 15 8.714 8.543 0.706 1.00 1.96 C ATOM 168 CZ PHE 15 7.856 9.627 0.394 1.00 1.96 C ATOM 169 C PHE 15 5.897 7.754 5.378 1.00 1.96 C ATOM 170 O PHE 15 6.246 8.910 5.637 1.00 1.96 O ATOM 171 N LYS 16 4.681 7.242 5.668 1.00 2.15 N ATOM 173 CA LYS 16 3.510 7.923 6.306 1.00 2.15 C ATOM 174 CB LYS 16 3.420 9.439 5.997 1.00 2.15 C ATOM 175 CG LYS 16 3.881 10.339 7.137 1.00 2.15 C ATOM 176 CD LYS 16 3.767 11.811 6.760 1.00 2.15 C ATOM 177 CE LYS 16 4.227 12.733 7.888 1.00 2.15 C ATOM 178 NZ LYS 16 5.697 12.669 8.150 1.00 2.15 N ATOM 182 C LYS 16 2.153 7.254 5.966 1.00 2.15 C ATOM 183 O LYS 16 1.490 7.642 4.989 1.00 2.15 O ATOM 184 N ASN 17 1.779 6.218 6.737 1.00 2.54 N ATOM 186 CA ASN 17 0.505 5.460 6.597 1.00 2.54 C ATOM 187 CB ASN 17 0.481 4.581 5.318 1.00 2.54 C ATOM 188 CG ASN 17 -0.931 4.353 4.774 1.00 2.54 C ATOM 189 OD1 ASN 17 -1.602 3.386 5.141 1.00 2.54 O ATOM 190 ND2 ASN 17 -1.376 5.236 3.884 1.00 2.54 N ATOM 193 C ASN 17 0.311 4.569 7.841 1.00 2.54 C ATOM 194 O ASN 17 1.263 4.348 8.599 1.00 2.54 O ATOM 195 N CYS 18 -0.930 4.099 8.054 1.00 3.30 N ATOM 197 CA CYS 18 -1.320 3.223 9.181 1.00 3.30 C ATOM 198 CB CYS 18 -1.645 4.051 10.439 1.00 3.30 C ATOM 199 SG CYS 18 -2.885 5.351 10.202 1.00 3.30 S ATOM 200 C CYS 18 -2.539 2.358 8.813 1.00 3.30 C ATOM 201 O CYS 18 -2.843 1.377 9.508 1.00 3.30 O ATOM 202 N GLU 19 -3.193 2.703 7.695 1.00 2.91 N ATOM 204 CA GLU 19 -4.404 2.021 7.192 1.00 2.91 C ATOM 205 CB GLU 19 -5.246 2.983 6.339 1.00 2.91 C ATOM 206 CG GLU 19 -5.840 4.167 7.099 1.00 2.91 C ATOM 207 CD GLU 19 -6.653 5.088 6.208 1.00 2.91 C ATOM 208 OE1 GLU 19 -6.072 6.041 5.646 1.00 2.91 O ATOM 209 OE2 GLU 19 -7.874 4.861 6.071 1.00 2.91 O ATOM 210 C GLU 19 -4.193 0.709 6.413 1.00 2.91 C ATOM 211 O GLU 19 -3.313 0.624 5.546 1.00 2.91 O ATOM 212 N VAL 20 -4.998 -0.304 6.768 1.00 3.49 N ATOM 214 CA VAL 20 -5.008 -1.646 6.142 1.00 3.49 C ATOM 215 CB VAL 20 -4.647 -2.804 7.170 1.00 3.49 C ATOM 216 CG1 VAL 20 -4.317 -4.115 6.437 1.00 3.49 C ATOM 217 CG2 VAL 20 -3.466 -2.402 8.056 1.00 3.49 C ATOM 218 C VAL 20 -6.463 -1.788 5.632 1.00 3.49 C ATOM 219 O VAL 20 -7.413 -1.548 6.390 1.00 3.49 O ATOM 220 N ARG 21 -6.617 -2.128 4.347 1.00 2.85 N ATOM 222 CA ARG 21 -7.937 -2.272 3.702 1.00 2.85 C ATOM 223 CB ARG 21 -8.063 -1.308 2.485 1.00 2.85 C ATOM 224 CG ARG 21 -6.843 -1.196 1.510 1.00 2.85 C ATOM 225 CD ARG 21 -5.891 -0.013 1.805 1.00 2.85 C ATOM 226 NE ARG 21 -6.530 1.293 1.625 1.00 2.85 N ATOM 228 CZ ARG 21 -5.897 2.467 1.649 1.00 2.85 C ATOM 229 NH1 ARG 21 -6.588 3.586 1.473 1.00 2.85 N ATOM 232 NH2 ARG 21 -4.584 2.539 1.846 1.00 2.85 N ATOM 235 C ARG 21 -8.372 -3.701 3.325 1.00 2.85 C ATOM 236 O ARG 21 -7.605 -4.451 2.713 1.00 2.85 O ATOM 237 N CYS 22 -9.614 -4.046 3.693 1.00 3.33 N ATOM 239 CA CYS 22 -10.235 -5.356 3.419 1.00 3.33 C ATOM 240 CB CYS 22 -10.818 -5.951 4.708 1.00 3.33 C ATOM 241 SG CYS 22 -11.964 -4.869 5.602 1.00 3.33 S ATOM 242 C CYS 22 -11.340 -5.181 2.362 1.00 3.33 C ATOM 243 O CYS 22 -11.727 -6.145 1.690 1.00 3.33 O ATOM 244 N ASP 23 -11.810 -3.933 2.225 1.00 3.51 N ATOM 246 CA ASP 23 -12.860 -3.526 1.273 1.00 3.51 C ATOM 247 CB ASP 23 -13.958 -2.707 2.001 1.00 3.51 C ATOM 248 CG ASP 23 -13.398 -1.587 2.891 1.00 3.51 C ATOM 249 OD1 ASP 23 -13.143 -1.844 4.088 1.00 3.51 O ATOM 250 OD2 ASP 23 -13.227 -0.453 2.391 1.00 3.51 O ATOM 251 C ASP 23 -12.250 -2.758 0.073 1.00 3.51 C ATOM 252 O ASP 23 -12.912 -1.919 -0.555 1.00 3.51 O ATOM 253 N GLU 24 -10.996 -3.117 -0.257 1.00 4.15 N ATOM 255 CA GLU 24 -10.154 -2.547 -1.345 1.00 4.15 C ATOM 256 CB GLU 24 -10.316 -3.320 -2.696 1.00 4.15 C ATOM 257 CG GLU 24 -11.734 -3.424 -3.327 1.00 4.15 C ATOM 258 CD GLU 24 -12.416 -4.762 -3.067 1.00 4.15 C ATOM 259 OE1 GLU 24 -13.150 -4.873 -2.063 1.00 4.15 O ATOM 260 OE2 GLU 24 -12.215 -5.698 -3.869 1.00 4.15 O ATOM 261 C GLU 24 -10.127 -1.006 -1.534 1.00 4.15 C ATOM 262 O GLU 24 -10.803 -0.458 -2.418 1.00 4.15 O ATOM 263 N SER 25 -9.351 -0.333 -0.664 1.00 4.36 N ATOM 265 CA SER 25 -9.125 1.139 -0.610 1.00 4.36 C ATOM 266 CB SER 25 -8.085 1.577 -1.662 1.00 4.36 C ATOM 267 OG SER 25 -8.486 1.208 -2.971 1.00 4.36 O ATOM 269 C SER 25 -10.342 2.093 -0.625 1.00 4.36 C ATOM 270 O SER 25 -11.400 1.750 -1.165 1.00 4.36 O ATOM 271 N ASN 26 -10.167 3.281 -0.024 1.00 6.47 N ATOM 273 CA ASN 26 -11.198 4.333 0.070 1.00 6.47 C ATOM 274 CB ASN 26 -11.153 4.979 1.470 1.00 6.47 C ATOM 275 CG ASN 26 -12.491 5.589 1.893 1.00 6.47 C ATOM 276 OD1 ASN 26 -13.322 4.923 2.514 1.00 6.47 O ATOM 277 ND2 ASN 26 -12.691 6.863 1.570 1.00 6.47 N ATOM 280 C ASN 26 -10.961 5.386 -1.042 1.00 6.47 C ATOM 281 O ASN 26 -11.900 5.754 -1.757 1.00 6.47 O ATOM 282 N HIS 27 -9.707 5.849 -1.160 1.00 7.07 N ATOM 284 CA HIS 27 -9.251 6.825 -2.170 1.00 7.07 C ATOM 285 CG HIS 27 -8.605 9.301 -2.348 1.00 7.07 C ATOM 286 CD2 HIS 27 -9.260 10.484 -2.240 1.00 7.07 C ATOM 287 ND1 HIS 27 -7.807 9.409 -3.468 1.00 7.07 N ATOM 289 CE1 HIS 27 -7.971 10.602 -4.013 1.00 7.07 C ATOM 290 NE2 HIS 27 -8.847 11.272 -3.287 1.00 7.07 N ATOM 292 C HIS 27 -8.180 6.048 -2.957 1.00 7.07 C ATOM 293 O HIS 27 -7.444 5.255 -2.351 1.00 7.07 O ATOM 294 CB HIS 27 -8.638 8.070 -1.486 1.00 7.07 C ATOM 295 N CYS 28 -8.114 6.242 -4.290 1.00 6.65 N ATOM 297 CA CYS 28 -7.167 5.546 -5.215 1.00 6.65 C ATOM 298 CB CYS 28 -5.685 5.751 -4.830 1.00 6.65 C ATOM 299 SG CYS 28 -4.482 5.103 -6.023 1.00 6.65 S ATOM 300 C CYS 28 -7.519 4.046 -5.300 1.00 6.65 C ATOM 301 O CYS 28 -8.005 3.483 -4.312 1.00 6.65 O ATOM 302 N VAL 29 -7.274 3.399 -6.448 1.00 5.64 N ATOM 304 CA VAL 29 -7.629 1.974 -6.610 1.00 5.64 C ATOM 305 CB VAL 29 -8.438 1.699 -7.945 1.00 5.64 C ATOM 306 CG1 VAL 29 -9.872 2.181 -7.788 1.00 5.64 C ATOM 307 CG2 VAL 29 -7.787 2.387 -9.166 1.00 5.64 C ATOM 308 C VAL 29 -6.442 0.996 -6.474 1.00 5.64 C ATOM 309 O VAL 29 -5.405 1.128 -7.142 1.00 5.64 O ATOM 310 N GLU 30 -6.633 0.054 -5.540 1.00 5.53 N ATOM 312 CA GLU 30 -5.695 -1.012 -5.148 1.00 5.53 C ATOM 313 CB GLU 30 -5.122 -0.760 -3.742 1.00 5.53 C ATOM 314 CG GLU 30 -4.170 0.429 -3.642 1.00 5.53 C ATOM 315 CD GLU 30 -3.633 0.632 -2.237 1.00 5.53 C ATOM 316 OE1 GLU 30 -2.578 0.046 -1.911 1.00 5.53 O ATOM 317 OE2 GLU 30 -4.264 1.379 -1.460 1.00 5.53 O ATOM 318 C GLU 30 -6.433 -2.354 -5.167 1.00 5.53 C ATOM 319 O GLU 30 -7.647 -2.390 -4.927 1.00 5.53 O ATOM 320 N VAL 31 -5.705 -3.439 -5.468 1.00 5.02 N ATOM 322 CA VAL 31 -6.259 -4.809 -5.528 1.00 5.02 C ATOM 323 CB VAL 31 -5.840 -5.573 -6.845 1.00 5.02 C ATOM 324 CG1 VAL 31 -6.680 -5.081 -8.013 1.00 5.02 C ATOM 325 CG2 VAL 31 -4.339 -5.388 -7.172 1.00 5.02 C ATOM 326 C VAL 31 -5.849 -5.610 -4.273 1.00 5.02 C ATOM 327 O VAL 31 -4.726 -5.456 -3.775 1.00 5.02 O ATOM 328 N ARG 32 -6.769 -6.454 -3.784 1.00 3.67 N ATOM 330 CA ARG 32 -6.569 -7.262 -2.568 1.00 3.67 C ATOM 331 CB ARG 32 -7.727 -7.045 -1.562 1.00 3.67 C ATOM 332 CG ARG 32 -9.165 -7.178 -2.113 1.00 3.67 C ATOM 333 CD ARG 32 -10.196 -7.160 -0.996 1.00 3.67 C ATOM 334 NE ARG 32 -11.555 -7.348 -1.506 1.00 3.67 N ATOM 336 CZ ARG 32 -12.555 -7.926 -0.838 1.00 3.67 C ATOM 337 NH1 ARG 32 -13.745 -8.037 -1.410 1.00 3.67 N ATOM 340 NH2 ARG 32 -12.378 -8.403 0.391 1.00 3.67 N ATOM 343 C ARG 32 -6.336 -8.765 -2.788 1.00 3.67 C ATOM 344 O ARG 32 -6.975 -9.385 -3.648 1.00 3.67 O ATOM 345 N CYS 33 -5.400 -9.313 -2.003 1.00 3.89 N ATOM 347 CA CYS 33 -5.008 -10.732 -2.013 1.00 3.89 C ATOM 348 CB CYS 33 -3.557 -10.882 -2.494 1.00 3.89 C ATOM 349 SG CYS 33 -3.055 -12.584 -2.839 1.00 3.89 S ATOM 350 C CYS 33 -5.147 -11.249 -0.570 1.00 3.89 C ATOM 351 O CYS 33 -5.392 -10.454 0.346 1.00 3.89 O ATOM 352 N SER 34 -4.991 -12.572 -0.378 1.00 5.31 N ATOM 354 CA SER 34 -5.085 -13.289 0.923 1.00 5.31 C ATOM 355 CB SER 34 -3.946 -12.877 1.889 1.00 5.31 C ATOM 356 OG SER 34 -3.903 -13.705 3.043 1.00 5.31 O ATOM 358 C SER 34 -6.465 -13.194 1.615 1.00 5.31 C ATOM 359 O SER 34 -7.170 -14.206 1.707 1.00 5.31 O ATOM 360 N ASP 35 -6.839 -11.977 2.060 1.00 4.38 N ATOM 362 CA ASP 35 -8.110 -11.622 2.760 1.00 4.38 C ATOM 363 CB ASP 35 -9.158 -11.027 1.769 1.00 4.38 C ATOM 364 CG ASP 35 -9.482 -11.953 0.591 1.00 4.38 C ATOM 365 OD1 ASP 35 -8.805 -11.851 -0.455 1.00 4.38 O ATOM 366 OD2 ASP 35 -10.423 -12.769 0.711 1.00 4.38 O ATOM 367 C ASP 35 -8.745 -12.652 3.740 1.00 4.38 C ATOM 368 O ASP 35 -9.934 -12.558 4.082 1.00 4.38 O ATOM 369 N THR 36 -7.914 -13.594 4.211 1.00 5.25 N ATOM 371 CA THR 36 -8.298 -14.673 5.141 1.00 5.25 C ATOM 372 CB THR 36 -7.745 -16.077 4.647 1.00 5.25 C ATOM 373 OG1 THR 36 -8.042 -17.093 5.617 1.00 5.25 O ATOM 375 CG2 THR 36 -6.225 -16.048 4.362 1.00 5.25 C ATOM 376 C THR 36 -7.878 -14.367 6.600 1.00 5.25 C ATOM 377 O THR 36 -8.491 -14.875 7.550 1.00 5.25 O ATOM 378 N LYS 37 -6.861 -13.506 6.745 1.00 5.13 N ATOM 380 CA LYS 37 -6.296 -13.080 8.042 1.00 5.13 C ATOM 381 CB LYS 37 -4.827 -12.664 7.862 1.00 5.13 C ATOM 382 CG LYS 37 -3.871 -13.809 7.546 1.00 5.13 C ATOM 383 CD LYS 37 -2.440 -13.309 7.386 1.00 5.13 C ATOM 384 CE LYS 37 -1.466 -14.440 7.067 1.00 5.13 C ATOM 385 NZ LYS 37 -1.661 -15.032 5.709 1.00 5.13 N ATOM 389 C LYS 37 -7.107 -11.930 8.679 1.00 5.13 C ATOM 390 O LYS 37 -8.133 -11.525 8.119 1.00 5.13 O ATOM 391 N TYR 38 -6.644 -11.420 9.832 1.00 4.63 N ATOM 393 CA TYR 38 -7.290 -10.320 10.580 1.00 4.63 C ATOM 394 CB TYR 38 -6.637 -10.159 11.975 1.00 4.63 C ATOM 395 CG TYR 38 -6.745 -11.355 12.929 1.00 4.63 C ATOM 396 CD1 TYR 38 -7.831 -11.476 13.833 1.00 4.63 C ATOM 397 CE1 TYR 38 -7.915 -12.565 14.744 1.00 4.63 C ATOM 398 CD2 TYR 38 -5.744 -12.359 12.961 1.00 4.63 C ATOM 399 CE2 TYR 38 -5.823 -13.452 13.868 1.00 4.63 C ATOM 400 CZ TYR 38 -6.910 -13.545 14.752 1.00 4.63 C ATOM 401 OH TYR 38 -6.986 -14.602 15.630 1.00 4.63 O ATOM 403 C TYR 38 -7.251 -8.979 9.825 1.00 4.63 C ATOM 404 O TYR 38 -6.255 -8.673 9.155 1.00 4.63 O ATOM 405 N THR 39 -8.339 -8.204 9.935 1.00 4.63 N ATOM 407 CA THR 39 -8.490 -6.897 9.268 1.00 4.63 C ATOM 408 CB THR 39 -9.795 -6.845 8.358 1.00 4.63 C ATOM 409 OG1 THR 39 -9.971 -5.528 7.817 1.00 4.63 O ATOM 411 CG2 THR 39 -11.067 -7.274 9.125 1.00 4.63 C ATOM 412 C THR 39 -8.429 -5.698 10.242 1.00 4.63 C ATOM 413 O THR 39 -8.939 -5.777 11.368 1.00 4.63 O ATOM 414 N LEU 40 -7.776 -4.618 9.788 1.00 5.47 N ATOM 416 CA LEU 40 -7.602 -3.361 10.538 1.00 5.47 C ATOM 417 CB LEU 40 -6.091 -3.076 10.746 1.00 5.47 C ATOM 418 CG LEU 40 -5.522 -2.277 11.941 1.00 5.47 C ATOM 419 CD1 LEU 40 -4.199 -2.893 12.363 1.00 5.47 C ATOM 420 CD2 LEU 40 -5.342 -0.784 11.615 1.00 5.47 C ATOM 421 C LEU 40 -8.272 -2.233 9.722 1.00 5.47 C ATOM 422 O LEU 40 -8.679 -2.462 8.576 1.00 5.47 O ATOM 423 N CYS 41 -8.383 -1.033 10.323 1.00 6.28 N ATOM 425 CA CYS 41 -8.990 0.197 9.739 1.00 6.28 C ATOM 426 CB CYS 41 -8.179 0.719 8.529 1.00 6.28 C ATOM 427 SG CYS 41 -8.694 2.334 7.882 1.00 6.28 S ATOM 428 C CYS 41 -10.482 0.097 9.385 1.00 6.28 C ATOM 429 O CYS 41 -11.211 1.073 9.659 1.00 6.28 O ATOM 430 OXT CYS 41 -10.903 -0.949 8.843 1.00 6.28 O TER END