####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS497_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 1 - 28 4.62 13.36 LONGEST_CONTINUOUS_SEGMENT: 28 2 - 29 4.88 13.15 LCS_AVERAGE: 56.87 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 1.85 15.39 LCS_AVERAGE: 24.57 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 0.78 16.23 LCS_AVERAGE: 19.63 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 28 0 3 3 4 4 5 7 8 10 12 15 19 19 20 26 28 28 28 28 28 LCS_GDT Q 2 Q 2 9 16 28 1 4 6 9 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT E 3 E 3 14 16 28 5 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT T 4 T 4 14 16 28 5 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT R 5 R 5 14 16 28 5 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT K 6 K 6 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT K 7 K 7 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT C 8 C 8 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT T 9 T 9 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT E 10 E 10 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT M 11 M 11 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT K 12 K 12 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT K 13 K 13 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT K 14 K 14 14 16 28 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT F 15 F 15 14 16 28 6 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT K 16 K 16 14 16 28 4 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT N 17 N 17 3 16 28 3 3 4 5 5 10 14 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT C 18 C 18 6 6 28 3 4 6 6 6 7 8 14 19 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT E 19 E 19 6 6 28 3 5 6 6 6 8 12 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT V 20 V 20 6 6 28 3 5 6 6 6 7 9 11 17 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT R 21 R 21 6 6 28 3 5 6 6 6 8 12 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT C 22 C 22 6 6 28 3 5 6 6 6 7 8 11 17 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT D 23 D 23 6 6 28 3 5 6 6 6 7 11 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT E 24 E 24 3 6 28 3 4 4 4 7 14 16 17 20 23 24 24 26 26 27 28 28 28 28 28 LCS_GDT S 25 S 25 3 6 28 3 4 4 4 5 7 9 11 11 17 19 21 26 26 27 28 28 28 28 28 LCS_GDT N 26 N 26 3 7 28 3 4 4 5 6 7 10 15 19 22 24 24 26 26 27 28 28 28 28 28 LCS_GDT H 27 H 27 4 7 28 3 4 5 5 6 7 8 10 15 18 22 24 26 26 27 28 28 28 28 28 LCS_GDT C 28 C 28 5 7 28 3 4 5 6 7 7 8 9 10 10 20 24 25 26 27 28 28 28 28 28 LCS_GDT V 29 V 29 5 7 28 3 4 5 6 7 7 8 9 10 10 11 12 13 13 15 24 26 27 28 28 LCS_GDT E 30 E 30 5 7 13 3 4 5 6 7 7 8 9 10 10 11 12 13 13 15 16 20 22 25 27 LCS_GDT V 31 V 31 5 7 13 3 4 5 6 7 7 8 9 10 10 11 12 13 13 15 16 20 22 24 27 LCS_GDT R 32 R 32 5 7 13 3 4 5 6 7 7 8 9 10 10 12 13 15 16 18 19 20 22 26 27 LCS_GDT C 33 C 33 5 7 13 3 5 5 6 7 7 8 9 10 11 12 13 15 16 18 19 20 22 26 27 LCS_GDT S 34 S 34 5 7 12 4 5 5 5 7 7 8 8 9 9 12 13 13 16 17 17 20 22 26 27 LCS_GDT D 35 D 35 5 6 12 4 5 5 5 7 7 8 8 10 11 12 13 13 16 17 19 20 22 26 27 LCS_GDT T 36 T 36 5 6 12 4 5 5 5 5 6 7 9 10 11 12 13 15 16 18 19 20 22 26 27 LCS_GDT K 37 K 37 5 6 12 4 5 5 5 5 6 7 7 8 11 12 13 15 16 18 19 20 22 26 27 LCS_GDT Y 38 Y 38 5 6 11 4 5 5 5 5 6 7 9 9 11 12 13 15 16 18 19 20 22 26 27 LCS_GDT T 39 T 39 5 6 11 4 5 5 5 6 7 8 9 9 11 12 13 15 16 18 19 20 22 26 27 LCS_GDT L 40 L 40 5 6 11 4 5 5 5 5 7 8 9 9 11 12 13 15 16 18 19 20 22 24 27 LCS_GDT C 41 C 41 5 6 11 3 5 5 5 5 6 7 9 9 11 12 13 15 16 18 19 19 22 23 26 LCS_AVERAGE LCS_A: 33.69 ( 19.63 24.57 56.87 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 14 14 15 15 16 17 20 23 24 24 26 26 27 28 28 28 28 28 GDT PERCENT_AT 21.95 29.27 34.15 34.15 36.59 36.59 39.02 41.46 48.78 56.10 58.54 58.54 63.41 63.41 65.85 68.29 68.29 68.29 68.29 68.29 GDT RMS_LOCAL 0.31 0.61 0.78 0.78 1.15 1.15 1.96 2.95 3.28 3.73 3.87 3.87 4.25 4.25 4.42 4.62 4.62 4.62 4.62 4.62 GDT RMS_ALL_AT 16.70 16.53 16.23 16.23 15.92 15.92 14.87 13.35 13.25 12.79 12.97 12.97 13.28 13.28 13.25 13.36 13.36 13.36 13.36 13.36 # Checking swapping # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 8.994 0 0.577 0.964 13.051 0.000 0.000 13.051 LGA Q 2 Q 2 2.830 0 0.309 0.851 4.759 36.364 40.202 1.861 LGA E 3 E 3 1.607 0 0.178 1.235 3.381 66.364 51.111 0.642 LGA T 4 T 4 1.634 0 0.010 0.052 3.562 54.091 41.818 3.562 LGA R 5 R 5 3.134 0 0.051 0.864 9.637 27.727 10.579 6.263 LGA K 6 K 6 1.910 0 0.045 1.086 11.003 66.364 32.525 11.003 LGA K 7 K 7 1.547 0 0.042 1.089 3.761 60.000 45.455 1.091 LGA C 8 C 8 3.200 0 0.026 0.045 5.751 25.455 17.879 5.751 LGA T 9 T 9 2.971 0 0.051 0.935 6.507 35.909 25.974 2.845 LGA E 10 E 10 1.538 0 0.032 0.206 6.088 58.182 30.707 6.088 LGA M 11 M 11 2.083 0 0.095 1.009 3.853 48.182 33.409 2.527 LGA K 12 K 12 2.564 0 0.028 0.818 10.267 38.636 18.586 10.267 LGA K 13 K 13 2.489 0 0.035 0.347 7.201 44.545 21.616 7.201 LGA K 14 K 14 2.439 0 0.084 0.102 5.565 36.364 19.798 4.784 LGA F 15 F 15 3.080 0 0.513 1.423 5.515 18.636 35.207 2.365 LGA K 16 K 16 2.880 0 0.142 1.144 9.998 41.818 18.586 9.998 LGA N 17 N 17 4.189 0 0.260 0.321 9.313 10.909 5.455 9.313 LGA C 18 C 18 6.250 0 0.259 0.956 10.645 1.818 1.212 10.645 LGA E 19 E 19 5.264 0 0.260 1.153 7.063 0.000 4.444 4.034 LGA V 20 V 20 7.166 0 0.063 0.969 10.296 0.000 0.000 8.587 LGA R 21 R 21 5.350 0 0.068 1.279 7.384 0.000 2.479 5.948 LGA C 22 C 22 7.036 0 0.639 0.719 9.538 0.000 0.000 9.538 LGA D 23 D 23 5.565 0 0.225 1.141 9.869 0.000 0.000 7.365 LGA E 24 E 24 5.345 0 0.616 0.951 9.329 1.364 0.606 9.218 LGA S 25 S 25 7.520 0 0.402 0.795 9.695 0.000 0.000 7.784 LGA N 26 N 26 7.798 0 0.653 0.887 8.284 0.000 0.000 8.284 LGA H 27 H 27 10.512 0 0.474 1.214 18.034 0.000 0.000 17.907 LGA C 28 C 28 8.648 0 0.083 0.718 8.969 0.000 0.000 6.013 LGA V 29 V 29 12.175 0 0.053 1.071 17.209 0.000 0.000 17.209 LGA E 30 E 30 12.933 0 0.043 0.786 14.635 0.000 0.000 11.622 LGA V 31 V 31 18.600 0 0.063 1.124 22.723 0.000 0.000 22.723 LGA R 32 R 32 20.053 0 0.257 1.193 21.987 0.000 0.000 12.033 LGA C 33 C 33 25.076 0 0.543 1.127 27.131 0.000 0.000 25.834 LGA S 34 S 34 25.570 0 0.176 0.716 26.877 0.000 0.000 24.043 LGA D 35 D 35 29.842 0 0.048 0.886 33.978 0.000 0.000 33.978 LGA T 36 T 36 30.726 0 0.160 0.901 32.192 0.000 0.000 32.095 LGA K 37 K 37 28.176 0 0.619 1.540 30.137 0.000 0.000 30.137 LGA Y 38 Y 38 25.019 0 0.129 1.256 30.009 0.000 0.000 30.009 LGA T 39 T 39 19.128 0 0.148 0.935 21.424 0.000 0.000 18.175 LGA L 40 L 40 18.509 0 0.605 0.896 21.312 0.000 0.000 21.312 LGA C 41 C 41 15.897 0 0.228 0.335 18.306 0.000 0.000 18.306 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 10.196 10.007 11.423 16.408 11.162 7.539 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 2.95 43.293 39.689 0.558 LGA_LOCAL RMSD: 2.948 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.353 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 10.196 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.728553 * X + -0.515628 * Y + -0.450931 * Z + -2.705409 Y_new = -0.354887 * X + -0.278932 * Y + 0.892330 * Z + -5.031900 Z_new = -0.585889 * X + 0.810139 * Y + 0.020227 * Z + 1.825077 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.688308 0.625976 1.545834 [DEG: -154.0287 35.8658 88.5697 ] ZXZ: -2.673681 1.550568 -0.626124 [DEG: -153.1906 88.8410 -35.8743 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS497_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 2.95 39.689 10.20 REMARK ---------------------------------------------------------- MOLECULE T0955TS497_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 CB SER 1 -5.060 -6.388 2.360 1.00 1.78 C ATOM 2 OG SER 1 -4.088 -5.359 2.433 1.00 1.78 O ATOM 4 C SER 1 -3.255 -8.181 2.324 1.00 1.78 C ATOM 5 O SER 1 -2.346 -7.382 2.595 1.00 1.78 O ATOM 8 N SER 1 -5.606 -8.726 1.701 1.00 1.78 N ATOM 10 CA SER 1 -4.552 -7.675 1.663 1.00 1.78 C ATOM 11 N GLN 2 -3.150 -9.498 2.554 1.00 1.59 N ATOM 13 CA GLN 2 -1.958 -10.050 3.227 1.00 1.59 C ATOM 14 CB GLN 2 -2.290 -11.380 3.893 1.00 1.59 C ATOM 15 CG GLN 2 -3.182 -11.275 5.124 1.00 1.59 C ATOM 16 CD GLN 2 -3.443 -12.621 5.772 1.00 1.59 C ATOM 17 OE1 GLN 2 -4.391 -13.322 5.418 1.00 1.59 O ATOM 18 NE2 GLN 2 -2.598 -12.992 6.729 1.00 1.59 N ATOM 21 C GLN 2 -0.550 -10.147 2.593 1.00 1.59 C ATOM 22 O GLN 2 0.386 -9.634 3.198 1.00 1.59 O ATOM 23 N GLU 3 -0.362 -10.786 1.430 1.00 1.50 N ATOM 25 CA GLU 3 1.003 -10.872 0.844 1.00 1.50 C ATOM 26 CB GLU 3 1.161 -12.180 0.030 1.00 1.50 C ATOM 27 CG GLU 3 0.065 -12.489 -1.012 1.00 1.50 C ATOM 28 CD GLU 3 0.313 -13.789 -1.753 1.00 1.50 C ATOM 29 OE1 GLU 3 -0.161 -14.844 -1.282 1.00 1.50 O ATOM 30 OE2 GLU 3 0.982 -13.755 -2.807 1.00 1.50 O ATOM 31 C GLU 3 1.607 -9.665 0.076 1.00 1.50 C ATOM 32 O GLU 3 2.581 -9.045 0.541 1.00 1.50 O ATOM 33 N THR 4 0.919 -9.265 -1.005 1.00 1.79 N ATOM 35 CA THR 4 1.306 -8.142 -1.883 1.00 1.79 C ATOM 36 CB THR 4 0.654 -8.259 -3.325 1.00 1.79 C ATOM 37 OG1 THR 4 0.935 -7.079 -4.091 1.00 1.79 O ATOM 39 CG2 THR 4 -0.867 -8.502 -3.266 1.00 1.79 C ATOM 40 C THR 4 1.030 -6.793 -1.208 1.00 1.79 C ATOM 41 O THR 4 1.867 -5.881 -1.234 1.00 1.79 O ATOM 42 N ARG 5 -0.172 -6.692 -0.627 1.00 1.70 N ATOM 44 CA ARG 5 -0.615 -5.500 0.086 1.00 1.70 C ATOM 45 CB ARG 5 -2.134 -5.392 0.164 1.00 1.70 C ATOM 46 CG ARG 5 -2.775 -4.850 -1.113 1.00 1.70 C ATOM 47 CD ARG 5 -4.205 -4.363 -0.890 1.00 1.70 C ATOM 48 NE ARG 5 -5.169 -5.457 -0.756 1.00 1.70 N ATOM 50 CZ ARG 5 -6.495 -5.319 -0.780 1.00 1.70 C ATOM 51 NH1 ARG 5 -7.058 -4.127 -0.931 1.00 1.70 N ATOM 54 NH2 ARG 5 -7.267 -6.390 -0.650 1.00 1.70 N ATOM 57 C ARG 5 0.085 -5.217 1.420 1.00 1.70 C ATOM 58 O ARG 5 0.255 -4.052 1.754 1.00 1.70 O ATOM 59 N LYS 6 0.481 -6.253 2.182 1.00 1.58 N ATOM 61 CA LYS 6 1.199 -6.057 3.464 1.00 1.58 C ATOM 62 CB LYS 6 1.280 -7.332 4.302 1.00 1.58 C ATOM 63 CG LYS 6 0.266 -7.391 5.438 1.00 1.58 C ATOM 64 CD LYS 6 0.466 -8.639 6.292 1.00 1.58 C ATOM 65 CE LYS 6 -0.489 -8.684 7.482 1.00 1.58 C ATOM 66 NZ LYS 6 -1.915 -8.897 7.096 1.00 1.58 N ATOM 70 C LYS 6 2.598 -5.473 3.256 1.00 1.58 C ATOM 71 O LYS 6 3.018 -4.610 4.034 1.00 1.58 O ATOM 72 N LYS 7 3.310 -5.940 2.218 1.00 1.39 N ATOM 74 CA LYS 7 4.642 -5.414 1.874 1.00 1.39 C ATOM 75 CB LYS 7 5.408 -6.324 0.886 1.00 1.39 C ATOM 76 CG LYS 7 4.718 -6.752 -0.419 1.00 1.39 C ATOM 77 CD LYS 7 5.679 -7.560 -1.289 1.00 1.39 C ATOM 78 CE LYS 7 5.087 -7.911 -2.651 1.00 1.39 C ATOM 79 NZ LYS 7 4.898 -6.727 -3.542 1.00 1.39 N ATOM 83 C LYS 7 4.467 -3.968 1.361 1.00 1.39 C ATOM 84 O LYS 7 5.269 -3.084 1.682 1.00 1.39 O ATOM 85 N CYS 8 3.356 -3.749 0.638 1.00 1.47 N ATOM 87 CA CYS 8 2.952 -2.447 0.069 1.00 1.47 C ATOM 88 CB CYS 8 1.787 -2.649 -0.912 1.00 1.47 C ATOM 89 SG CYS 8 1.320 -1.182 -1.870 1.00 1.47 S ATOM 90 C CYS 8 2.548 -1.439 1.171 1.00 1.47 C ATOM 91 O CYS 8 3.012 -0.294 1.153 1.00 1.47 O ATOM 92 N THR 9 1.727 -1.897 2.134 1.00 1.68 N ATOM 94 CA THR 9 1.229 -1.095 3.276 1.00 1.68 C ATOM 95 CB THR 9 0.031 -1.765 4.015 1.00 1.68 C ATOM 96 OG1 THR 9 0.349 -3.124 4.326 1.00 1.68 O ATOM 98 CG2 THR 9 -1.234 -1.704 3.167 1.00 1.68 C ATOM 99 C THR 9 2.335 -0.734 4.284 1.00 1.68 C ATOM 100 O THR 9 2.320 0.364 4.847 1.00 1.68 O ATOM 101 N GLU 10 3.290 -1.659 4.479 1.00 1.55 N ATOM 103 CA GLU 10 4.447 -1.490 5.386 1.00 1.55 C ATOM 104 CB GLU 10 5.227 -2.814 5.481 1.00 1.55 C ATOM 105 CG GLU 10 5.928 -3.067 6.822 1.00 1.55 C ATOM 106 CD GLU 10 6.678 -4.387 6.852 1.00 1.55 C ATOM 107 OE1 GLU 10 6.073 -5.409 7.238 1.00 1.55 O ATOM 108 OE2 GLU 10 7.873 -4.401 6.488 1.00 1.55 O ATOM 109 C GLU 10 5.325 -0.355 4.806 1.00 1.55 C ATOM 110 O GLU 10 5.866 0.466 5.558 1.00 1.55 O ATOM 111 N MET 11 5.421 -0.324 3.468 1.00 1.36 N ATOM 113 CA MET 11 6.154 0.706 2.705 1.00 1.36 C ATOM 114 CG MET 11 7.339 -0.764 0.957 1.00 1.36 C ATOM 115 SD MET 11 7.459 -1.215 -0.788 1.00 1.36 S ATOM 116 CE MET 11 8.928 -0.301 -1.286 1.00 1.36 C ATOM 117 C MET 11 5.395 2.040 2.824 1.00 1.36 C ATOM 118 O MET 11 6.006 3.083 3.079 1.00 1.36 O ATOM 119 CB MET 11 6.283 0.300 1.230 1.00 1.36 C ATOM 120 N LYS 12 4.056 1.959 2.733 1.00 1.48 N ATOM 122 CA LYS 12 3.118 3.098 2.832 1.00 1.48 C ATOM 123 CB LYS 12 1.685 2.644 2.510 1.00 1.48 C ATOM 124 CG LYS 12 1.400 2.453 1.027 1.00 1.48 C ATOM 125 CD LYS 12 -0.038 2.002 0.793 1.00 1.48 C ATOM 126 CE LYS 12 -0.346 1.804 -0.690 1.00 1.48 C ATOM 127 NZ LYS 12 -0.366 3.077 -1.472 1.00 1.48 N ATOM 131 C LYS 12 3.168 3.722 4.236 1.00 1.48 C ATOM 132 O LYS 12 3.084 4.948 4.379 1.00 1.48 O ATOM 133 N LYS 13 3.318 2.855 5.249 1.00 1.67 N ATOM 135 CA LYS 13 3.422 3.224 6.674 1.00 1.67 C ATOM 136 CB LYS 13 3.290 1.983 7.568 1.00 1.67 C ATOM 137 CG LYS 13 1.867 1.504 7.794 1.00 1.67 C ATOM 138 CD LYS 13 1.829 0.339 8.776 1.00 1.67 C ATOM 139 CE LYS 13 0.402 -0.070 9.126 1.00 1.67 C ATOM 140 NZ LYS 13 -0.323 0.940 9.954 1.00 1.67 N ATOM 144 C LYS 13 4.746 3.941 6.974 1.00 1.67 C ATOM 145 O LYS 13 4.766 4.909 7.745 1.00 1.67 O ATOM 146 N LYS 14 5.836 3.457 6.355 1.00 1.69 N ATOM 148 CA LYS 14 7.189 4.018 6.527 1.00 1.69 C ATOM 149 CB LYS 14 8.255 3.034 6.021 1.00 1.69 C ATOM 150 CG LYS 14 8.468 1.816 6.911 1.00 1.69 C ATOM 151 CD LYS 14 9.541 0.894 6.340 1.00 1.69 C ATOM 152 CE LYS 14 9.776 -0.332 7.219 1.00 1.69 C ATOM 153 NZ LYS 14 8.626 -1.287 7.231 1.00 1.69 N ATOM 157 C LYS 14 7.423 5.409 5.907 1.00 1.69 C ATOM 158 O LYS 14 7.914 6.299 6.611 1.00 1.69 O ATOM 159 N PHE 15 7.087 5.601 4.618 1.00 1.64 N ATOM 161 CA PHE 15 7.265 6.916 3.972 1.00 1.64 C ATOM 162 CB PHE 15 7.587 6.832 2.447 1.00 1.64 C ATOM 163 CG PHE 15 6.624 5.996 1.600 1.00 1.64 C ATOM 164 CD1 PHE 15 7.089 4.823 0.966 1.00 1.64 C ATOM 165 CD2 PHE 15 5.296 6.419 1.342 1.00 1.64 C ATOM 166 CE1 PHE 15 6.254 4.081 0.085 1.00 1.64 C ATOM 167 CE2 PHE 15 4.450 5.687 0.464 1.00 1.64 C ATOM 168 CZ PHE 15 4.932 4.515 -0.166 1.00 1.64 C ATOM 169 C PHE 15 6.295 8.073 4.287 1.00 1.64 C ATOM 170 O PHE 15 6.763 9.153 4.659 1.00 1.64 O ATOM 171 N LYS 16 4.972 7.830 4.200 1.00 1.94 N ATOM 173 CA LYS 16 3.906 8.838 4.465 1.00 1.94 C ATOM 174 CB LYS 16 3.985 10.037 3.491 1.00 1.94 C ATOM 175 CG LYS 16 4.557 11.312 4.096 1.00 1.94 C ATOM 176 CD LYS 16 4.601 12.436 3.075 1.00 1.94 C ATOM 177 CE LYS 16 5.172 13.708 3.679 1.00 1.94 C ATOM 178 NZ LYS 16 5.221 14.820 2.690 1.00 1.94 N ATOM 182 C LYS 16 2.449 8.329 4.452 1.00 1.94 C ATOM 183 O LYS 16 1.687 8.640 5.375 1.00 1.94 O ATOM 184 N ASN 17 2.079 7.558 3.417 1.00 2.51 N ATOM 186 CA ASN 17 0.712 7.023 3.192 1.00 2.51 C ATOM 187 CB ASN 17 0.672 6.196 1.893 1.00 2.51 C ATOM 188 CG ASN 17 0.705 7.062 0.640 1.00 2.51 C ATOM 189 OD1 ASN 17 -0.334 7.335 0.038 1.00 2.51 O ATOM 190 ND2 ASN 17 1.898 7.493 0.239 1.00 2.51 N ATOM 193 C ASN 17 -0.087 6.311 4.310 1.00 2.51 C ATOM 194 O ASN 17 -0.927 6.953 4.952 1.00 2.51 O ATOM 195 N CYS 18 0.169 5.007 4.534 1.00 3.17 N ATOM 197 CA CYS 18 -0.516 4.140 5.535 1.00 3.17 C ATOM 198 CB CYS 18 -0.187 4.556 6.989 1.00 3.17 C ATOM 199 SG CYS 18 -0.913 3.519 8.291 1.00 3.17 S ATOM 200 C CYS 18 -2.046 4.042 5.311 1.00 3.17 C ATOM 201 O CYS 18 -2.804 4.934 5.723 1.00 3.17 O ATOM 202 N GLU 19 -2.467 2.983 4.605 1.00 2.28 N ATOM 204 CA GLU 19 -3.883 2.717 4.281 1.00 2.28 C ATOM 205 CB GLU 19 -4.146 2.877 2.772 1.00 2.28 C ATOM 206 CG GLU 19 -4.057 4.310 2.253 1.00 2.28 C ATOM 207 CD GLU 19 -4.325 4.412 0.762 1.00 2.28 C ATOM 208 OE1 GLU 19 -3.360 4.315 -0.025 1.00 2.28 O ATOM 209 OE2 GLU 19 -5.500 4.592 0.379 1.00 2.28 O ATOM 210 C GLU 19 -4.314 1.312 4.709 1.00 2.28 C ATOM 211 O GLU 19 -3.523 0.363 4.615 1.00 2.28 O ATOM 212 N VAL 20 -5.557 1.199 5.199 1.00 2.83 N ATOM 214 CA VAL 20 -6.159 -0.080 5.626 1.00 2.83 C ATOM 215 CB VAL 20 -6.695 -0.043 7.118 1.00 2.83 C ATOM 216 CG1 VAL 20 -5.528 -0.147 8.087 1.00 2.83 C ATOM 217 CG2 VAL 20 -7.500 1.244 7.413 1.00 2.83 C ATOM 218 C VAL 20 -7.268 -0.481 4.628 1.00 2.83 C ATOM 219 O VAL 20 -8.173 0.317 4.339 1.00 2.83 O ATOM 220 N ARG 21 -7.151 -1.697 4.081 1.00 2.46 N ATOM 222 CA ARG 21 -8.093 -2.258 3.094 1.00 2.46 C ATOM 223 CB ARG 21 -7.453 -2.315 1.695 1.00 2.46 C ATOM 224 CG ARG 21 -7.307 -0.949 1.018 1.00 2.46 C ATOM 225 CD ARG 21 -6.470 -1.008 -0.256 1.00 2.46 C ATOM 226 NE ARG 21 -5.044 -1.213 0.016 1.00 2.46 N ATOM 228 CZ ARG 21 -4.044 -0.701 -0.702 1.00 2.46 C ATOM 229 NH1 ARG 21 -2.791 -0.959 -0.355 1.00 2.46 N ATOM 232 NH2 ARG 21 -4.280 0.068 -1.761 1.00 2.46 N ATOM 235 C ARG 21 -8.582 -3.650 3.503 1.00 2.46 C ATOM 236 O ARG 21 -7.821 -4.422 4.098 1.00 2.46 O ATOM 237 N CYS 22 -9.857 -3.939 3.207 1.00 2.79 N ATOM 239 CA CYS 22 -10.507 -5.227 3.513 1.00 2.79 C ATOM 240 CB CYS 22 -11.826 -4.998 4.264 1.00 2.79 C ATOM 241 SG CYS 22 -12.968 -3.846 3.461 1.00 2.79 S ATOM 242 C CYS 22 -10.758 -6.034 2.229 1.00 2.79 C ATOM 243 O CYS 22 -10.656 -7.267 2.245 1.00 2.79 O ATOM 244 N ASP 23 -11.101 -5.331 1.138 1.00 3.32 N ATOM 246 CA ASP 23 -11.367 -5.924 -0.191 1.00 3.32 C ATOM 247 CB ASP 23 -12.854 -6.348 -0.356 1.00 3.32 C ATOM 248 CG ASP 23 -13.850 -5.265 0.085 1.00 3.32 C ATOM 249 OD1 ASP 23 -14.213 -4.407 -0.749 1.00 3.32 O ATOM 250 OD2 ASP 23 -14.277 -5.290 1.259 1.00 3.32 O ATOM 251 C ASP 23 -10.921 -5.010 -1.351 1.00 3.32 C ATOM 252 O ASP 23 -11.358 -3.854 -1.437 1.00 3.32 O ATOM 253 N GLU 24 -10.046 -5.545 -2.221 1.00 3.76 N ATOM 255 CA GLU 24 -9.464 -4.889 -3.428 1.00 3.76 C ATOM 256 CB GLU 24 -10.440 -4.926 -4.619 1.00 3.76 C ATOM 257 CG GLU 24 -10.701 -6.318 -5.188 1.00 3.76 C ATOM 258 CD GLU 24 -11.668 -6.303 -6.356 1.00 3.76 C ATOM 259 OE1 GLU 24 -12.890 -6.423 -6.122 1.00 3.76 O ATOM 260 OE2 GLU 24 -11.208 -6.173 -7.511 1.00 3.76 O ATOM 261 C GLU 24 -8.860 -3.474 -3.296 1.00 3.76 C ATOM 262 O GLU 24 -9.408 -2.622 -2.587 1.00 3.76 O ATOM 263 N SER 25 -7.737 -3.248 -3.995 1.00 3.90 N ATOM 265 CA SER 25 -7.003 -1.968 -4.000 1.00 3.90 C ATOM 266 CB SER 25 -5.510 -2.221 -3.719 1.00 3.90 C ATOM 267 OG SER 25 -4.947 -3.125 -4.657 1.00 3.90 O ATOM 269 C SER 25 -7.201 -1.179 -5.316 1.00 3.90 C ATOM 270 O SER 25 -6.270 -0.525 -5.810 1.00 3.90 O ATOM 271 N ASN 26 -8.435 -1.229 -5.853 1.00 5.33 N ATOM 273 CA ASN 26 -8.879 -0.561 -7.110 1.00 5.33 C ATOM 274 CB ASN 26 -8.874 0.979 -6.977 1.00 5.33 C ATOM 275 CG ASN 26 -9.870 1.487 -5.942 1.00 5.33 C ATOM 276 OD1 ASN 26 -9.538 1.643 -4.765 1.00 5.33 O ATOM 277 ND2 ASN 26 -11.096 1.764 -6.382 1.00 5.33 N ATOM 280 C ASN 26 -8.135 -0.987 -8.392 1.00 5.33 C ATOM 281 O ASN 26 -6.916 -1.198 -8.358 1.00 5.33 O ATOM 282 N HIS 27 -8.877 -1.092 -9.512 1.00 5.22 N ATOM 284 CA HIS 27 -8.394 -1.507 -10.863 1.00 5.22 C ATOM 285 CG HIS 27 -7.995 0.872 -11.731 1.00 5.22 C ATOM 286 CD2 HIS 27 -8.250 1.533 -12.887 1.00 5.22 C ATOM 287 ND1 HIS 27 -8.380 1.722 -10.715 1.00 5.22 N ATOM 289 CE1 HIS 27 -8.845 2.845 -11.232 1.00 5.22 C ATOM 290 NE2 HIS 27 -8.777 2.755 -12.548 1.00 5.22 N ATOM 292 C HIS 27 -7.795 -2.928 -10.887 1.00 5.22 C ATOM 293 O HIS 27 -6.958 -3.259 -10.035 1.00 5.22 O ATOM 294 CB HIS 27 -7.403 -0.485 -11.478 1.00 5.22 C ATOM 295 N CYS 28 -8.240 -3.762 -11.849 1.00 5.38 N ATOM 297 CA CYS 28 -7.823 -5.184 -12.037 1.00 5.38 C ATOM 298 CB CYS 28 -6.304 -5.334 -12.285 1.00 5.38 C ATOM 299 SG CYS 28 -5.757 -7.002 -12.740 1.00 5.38 S ATOM 300 C CYS 28 -8.278 -6.060 -10.851 1.00 5.38 C ATOM 301 O CYS 28 -8.285 -5.583 -9.709 1.00 5.38 O ATOM 302 N VAL 29 -8.639 -7.327 -11.109 1.00 5.13 N ATOM 304 CA VAL 29 -9.124 -8.224 -10.043 1.00 5.13 C ATOM 305 CB VAL 29 -10.552 -8.852 -10.424 1.00 5.13 C ATOM 306 CG1 VAL 29 -10.471 -9.782 -11.652 1.00 5.13 C ATOM 307 CG2 VAL 29 -11.215 -9.540 -9.218 1.00 5.13 C ATOM 308 C VAL 29 -8.081 -9.288 -9.602 1.00 5.13 C ATOM 309 O VAL 29 -7.543 -10.048 -10.419 1.00 5.13 O ATOM 310 N GLU 30 -7.801 -9.257 -8.293 1.00 4.06 N ATOM 312 CA GLU 30 -6.870 -10.138 -7.563 1.00 4.06 C ATOM 313 CB GLU 30 -5.617 -9.370 -7.102 1.00 4.06 C ATOM 314 CG GLU 30 -4.684 -8.937 -8.231 1.00 4.06 C ATOM 315 CD GLU 30 -3.477 -8.167 -7.732 1.00 4.06 C ATOM 316 OE1 GLU 30 -3.553 -6.923 -7.657 1.00 4.06 O ATOM 317 OE2 GLU 30 -2.448 -8.805 -7.419 1.00 4.06 O ATOM 318 C GLU 30 -7.637 -10.642 -6.336 1.00 4.06 C ATOM 319 O GLU 30 -8.479 -9.905 -5.806 1.00 4.06 O ATOM 320 N VAL 31 -7.368 -11.879 -5.892 1.00 3.98 N ATOM 322 CA VAL 31 -8.044 -12.436 -4.705 1.00 3.98 C ATOM 323 CB VAL 31 -8.681 -13.877 -5.001 1.00 3.98 C ATOM 324 CG1 VAL 31 -7.617 -14.922 -5.395 1.00 3.98 C ATOM 325 CG2 VAL 31 -9.561 -14.360 -3.837 1.00 3.98 C ATOM 326 C VAL 31 -7.032 -12.415 -3.527 1.00 3.98 C ATOM 327 O VAL 31 -5.924 -12.961 -3.621 1.00 3.98 O ATOM 328 N ARG 32 -7.440 -11.717 -2.461 1.00 2.74 N ATOM 330 CA ARG 32 -6.670 -11.507 -1.223 1.00 2.74 C ATOM 331 CB ARG 32 -6.153 -10.058 -1.144 1.00 2.74 C ATOM 332 CG ARG 32 -5.077 -9.720 -2.178 1.00 2.74 C ATOM 333 CD ARG 32 -4.902 -8.224 -2.341 1.00 2.74 C ATOM 334 NE ARG 32 -3.967 -7.897 -3.418 1.00 2.74 N ATOM 336 CZ ARG 32 -3.917 -6.733 -4.066 1.00 2.74 C ATOM 337 NH1 ARG 32 -3.020 -6.557 -5.027 1.00 2.74 N ATOM 340 NH2 ARG 32 -4.757 -5.745 -3.772 1.00 2.74 N ATOM 343 C ARG 32 -7.530 -11.827 0.000 1.00 2.74 C ATOM 344 O ARG 32 -8.747 -11.607 -0.028 1.00 2.74 O ATOM 345 N CYS 33 -6.899 -12.350 1.059 1.00 3.56 N ATOM 347 CA CYS 33 -7.581 -12.712 2.312 1.00 3.56 C ATOM 348 CB CYS 33 -7.203 -14.144 2.730 1.00 3.56 C ATOM 349 SG CYS 33 -5.425 -14.446 2.884 1.00 3.56 S ATOM 350 C CYS 33 -7.240 -11.691 3.421 1.00 3.56 C ATOM 351 O CYS 33 -6.215 -11.809 4.107 1.00 3.56 O ATOM 352 N SER 34 -8.092 -10.658 3.528 1.00 5.37 N ATOM 354 CA SER 34 -7.962 -9.562 4.507 1.00 5.37 C ATOM 355 CB SER 34 -7.991 -8.205 3.794 1.00 5.37 C ATOM 356 OG SER 34 -7.641 -7.147 4.672 1.00 5.37 O ATOM 358 C SER 34 -9.088 -9.625 5.548 1.00 5.37 C ATOM 359 O SER 34 -8.875 -9.274 6.715 1.00 5.37 O ATOM 360 N ASP 35 -10.272 -10.079 5.110 1.00 5.16 N ATOM 362 CA ASP 35 -11.476 -10.227 5.953 1.00 5.16 C ATOM 363 CB ASP 35 -12.725 -10.322 5.057 1.00 5.16 C ATOM 364 CG ASP 35 -14.009 -9.881 5.765 1.00 5.16 C ATOM 365 OD1 ASP 35 -14.350 -8.679 5.694 1.00 5.16 O ATOM 366 OD2 ASP 35 -14.682 -10.738 6.377 1.00 5.16 O ATOM 367 C ASP 35 -11.306 -11.502 6.809 1.00 5.16 C ATOM 368 O ASP 35 -11.956 -11.659 7.851 1.00 5.16 O ATOM 369 N THR 36 -10.406 -12.381 6.341 1.00 5.38 N ATOM 371 CA THR 36 -10.036 -13.655 6.983 1.00 5.38 C ATOM 372 CB THR 36 -10.216 -14.862 6.010 1.00 5.38 C ATOM 373 OG1 THR 36 -9.660 -14.541 4.729 1.00 5.38 O ATOM 375 CG2 THR 36 -11.690 -15.208 5.850 1.00 5.38 C ATOM 376 C THR 36 -8.560 -13.541 7.409 1.00 5.38 C ATOM 377 O THR 36 -7.813 -12.749 6.818 1.00 5.38 O ATOM 378 N LYS 37 -8.161 -14.299 8.450 1.00 5.83 N ATOM 380 CA LYS 37 -6.788 -14.341 9.037 1.00 5.83 C ATOM 381 CB LYS 37 -5.720 -14.770 7.999 1.00 5.83 C ATOM 382 CG LYS 37 -5.843 -16.212 7.520 1.00 5.83 C ATOM 383 CD LYS 37 -4.757 -16.551 6.505 1.00 5.83 C ATOM 384 CE LYS 37 -4.859 -17.992 6.010 1.00 5.83 C ATOM 385 NZ LYS 37 -4.532 -19.007 7.056 1.00 5.83 N ATOM 389 C LYS 37 -6.357 -13.039 9.751 1.00 5.83 C ATOM 390 O LYS 37 -5.287 -12.988 10.376 1.00 5.83 O ATOM 391 N TYR 38 -7.233 -12.019 9.696 1.00 4.91 N ATOM 393 CA TYR 38 -7.066 -10.664 10.286 1.00 4.91 C ATOM 394 CB TYR 38 -7.169 -10.689 11.840 1.00 4.91 C ATOM 395 CG TYR 38 -8.497 -11.176 12.431 1.00 4.91 C ATOM 396 CD1 TYR 38 -9.545 -10.267 12.722 1.00 4.91 C ATOM 397 CE1 TYR 38 -10.767 -10.711 13.303 1.00 4.91 C ATOM 398 CD2 TYR 38 -8.703 -12.544 12.739 1.00 4.91 C ATOM 399 CE2 TYR 38 -9.921 -12.995 13.321 1.00 4.91 C ATOM 400 CZ TYR 38 -10.943 -12.072 13.597 1.00 4.91 C ATOM 401 OH TYR 38 -12.123 -12.502 14.159 1.00 4.91 O ATOM 403 C TYR 38 -5.815 -9.877 9.844 1.00 4.91 C ATOM 404 O TYR 38 -4.692 -10.395 9.910 1.00 4.91 O ATOM 405 N THR 39 -6.038 -8.639 9.375 1.00 4.38 N ATOM 407 CA THR 39 -4.983 -7.722 8.905 1.00 4.38 C ATOM 408 CB THR 39 -5.267 -7.191 7.465 1.00 4.38 C ATOM 409 OG1 THR 39 -6.638 -6.784 7.361 1.00 4.38 O ATOM 411 CG2 THR 39 -4.965 -8.259 6.429 1.00 4.38 C ATOM 412 C THR 39 -4.787 -6.533 9.861 1.00 4.38 C ATOM 413 O THR 39 -5.759 -6.039 10.451 1.00 4.38 O ATOM 414 N LEU 40 -3.524 -6.115 10.027 1.00 4.79 N ATOM 416 CA LEU 40 -3.125 -4.996 10.896 1.00 4.79 C ATOM 417 CB LEU 40 -1.984 -5.443 11.836 1.00 4.79 C ATOM 418 CG LEU 40 -1.785 -4.889 13.266 1.00 4.79 C ATOM 419 CD1 LEU 40 -1.330 -6.017 14.177 1.00 4.79 C ATOM 420 CD2 LEU 40 -0.781 -3.725 13.307 1.00 4.79 C ATOM 421 C LEU 40 -2.663 -3.818 10.016 1.00 4.79 C ATOM 422 O LEU 40 -2.837 -2.653 10.395 1.00 4.79 O ATOM 423 N CYS 41 -2.083 -4.146 8.852 1.00 4.83 N ATOM 425 CA CYS 41 -1.575 -3.169 7.875 1.00 4.83 C ATOM 426 CB CYS 41 -0.124 -3.497 7.498 1.00 4.83 C ATOM 427 SG CYS 41 1.027 -3.508 8.893 1.00 4.83 S ATOM 428 C CYS 41 -2.446 -3.125 6.619 1.00 4.83 C ATOM 429 O CYS 41 -2.614 -2.021 6.058 1.00 4.83 O ATOM 430 OXT CYS 41 -2.963 -4.191 6.219 1.00 4.83 O TER END