####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS488_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS488_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.33 1.33 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.33 1.33 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 2 - 34 0.93 1.38 LCS_AVERAGE: 71.74 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 20 41 41 3 3 5 8 18 37 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 33 41 41 6 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 33 41 41 9 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 33 41 41 11 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 33 41 41 14 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 33 41 41 9 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 33 41 41 9 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 33 41 41 4 5 22 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 33 41 41 4 5 16 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 33 41 41 4 13 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 33 41 41 11 30 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 33 41 41 12 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 33 41 41 18 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 33 41 41 6 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 33 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 14 41 41 4 4 12 30 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 14 41 41 6 12 28 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 14 41 41 4 31 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 14 41 41 9 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 14 41 41 13 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 14 41 41 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 13 41 41 2 8 21 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 90.58 ( 71.74 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 19 32 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 46.34 78.05 82.93 90.24 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.35 0.59 0.65 0.92 1.08 1.20 1.20 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 GDT RMS_ALL_AT 1.39 1.38 1.36 1.34 1.34 1.34 1.34 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 1.33 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.797 0 0.022 0.736 6.124 7.727 5.758 4.559 LGA Q 2 Q 2 1.066 0 0.187 0.954 2.480 73.636 67.879 1.029 LGA E 3 E 3 1.172 0 0.019 1.513 6.922 65.455 35.354 6.310 LGA T 4 T 4 1.073 0 0.097 1.021 3.254 77.727 63.636 1.947 LGA R 5 R 5 0.515 0 0.024 0.154 0.984 90.909 86.777 0.984 LGA K 6 K 6 0.533 0 0.017 1.269 6.866 86.364 51.111 6.803 LGA K 7 K 7 0.923 0 0.048 0.666 2.932 77.727 56.970 2.414 LGA C 8 C 8 0.797 0 0.016 0.039 0.835 81.818 81.818 0.815 LGA T 9 T 9 0.290 0 0.018 0.099 0.450 100.000 100.000 0.404 LGA E 10 E 10 0.520 0 0.036 0.953 5.116 95.455 56.364 5.116 LGA M 11 M 11 0.503 0 0.014 0.118 1.119 95.455 84.545 1.119 LGA K 12 K 12 0.285 0 0.038 0.655 2.130 100.000 87.677 1.990 LGA K 13 K 13 0.232 0 0.049 0.907 1.963 95.455 79.394 1.963 LGA K 14 K 14 0.616 0 0.014 1.002 5.374 86.364 60.000 5.374 LGA F 15 F 15 0.621 0 0.081 0.184 0.939 81.818 88.430 0.882 LGA K 16 K 16 1.206 0 0.019 1.236 5.414 65.455 42.626 4.986 LGA N 17 N 17 0.635 0 0.186 0.463 1.139 77.727 77.955 1.139 LGA C 18 C 18 0.481 0 0.023 0.039 0.513 86.364 90.909 0.341 LGA E 19 E 19 0.644 0 0.217 0.465 2.171 81.818 73.333 1.211 LGA V 20 V 20 0.724 0 0.018 0.041 0.920 81.818 81.818 0.832 LGA R 21 R 21 0.683 0 0.186 1.243 5.832 86.364 44.959 5.832 LGA C 22 C 22 2.183 0 0.155 0.925 5.018 44.545 36.061 5.018 LGA D 23 D 23 2.871 0 0.338 1.137 5.124 21.818 17.955 3.138 LGA E 24 E 24 1.928 0 0.031 0.804 3.524 58.182 39.394 3.028 LGA S 25 S 25 1.070 0 0.070 0.667 3.612 73.636 59.394 3.612 LGA N 26 N 26 0.653 0 0.086 1.182 5.635 90.909 57.273 5.635 LGA H 27 H 27 0.367 0 0.088 0.356 1.739 100.000 83.091 1.345 LGA C 28 C 28 0.355 0 0.077 0.103 0.941 90.909 87.879 0.627 LGA V 29 V 29 0.561 0 0.048 0.062 1.200 95.455 84.935 1.060 LGA E 30 E 30 0.626 0 0.169 0.287 1.757 86.364 74.949 1.757 LGA V 31 V 31 0.571 0 0.036 0.072 0.583 81.818 81.818 0.509 LGA R 32 R 32 0.748 0 0.136 1.175 6.213 77.727 52.727 6.213 LGA C 33 C 33 0.860 0 0.547 0.981 3.709 60.000 56.667 3.048 LGA S 34 S 34 0.466 0 0.258 0.574 2.928 67.727 63.333 2.928 LGA D 35 D 35 3.414 0 0.201 0.983 8.197 23.182 11.818 8.197 LGA T 36 T 36 2.403 0 0.024 0.170 3.418 45.455 36.364 3.418 LGA K 37 K 37 1.140 0 0.098 1.452 5.235 70.000 51.313 5.235 LGA Y 38 Y 38 0.796 0 0.183 1.278 5.361 81.818 50.606 5.361 LGA T 39 T 39 0.526 0 0.060 0.076 1.740 82.273 72.987 1.427 LGA L 40 L 40 0.509 0 0.152 0.958 2.754 90.909 71.818 1.607 LGA C 41 C 41 2.520 0 0.157 0.820 4.997 35.909 30.130 4.997 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.330 1.407 2.301 74.978 61.898 38.004 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.33 92.073 95.700 2.868 LGA_LOCAL RMSD: 1.330 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.330 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.330 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.236327 * X + -0.752632 * Y + 0.614569 * Z + 1.290365 Y_new = 0.509717 * X + -0.442450 * Y + -0.737853 * Z + 0.589190 Z_new = 0.827248 * X + 0.487631 * Y + 0.279066 * Z + -11.533892 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.136654 -0.974191 1.051001 [DEG: 65.1255 -55.8170 60.2179 ] ZXZ: 0.694492 1.287975 1.038162 [DEG: 39.7914 73.7955 59.4823 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS488_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS488_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.33 95.700 1.33 REMARK ---------------------------------------------------------- MOLECULE T0955TS488_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT 2ki0_A ATOM 1 N SER 1 -3.549 -11.413 -1.390 1.00 0.00 N ATOM 2 CA SER 1 -2.460 -12.190 -0.808 1.00 0.00 C ATOM 3 C SER 1 -1.853 -11.513 0.404 1.00 0.00 C ATOM 4 O SER 1 -1.545 -10.319 0.371 1.00 0.00 O ATOM 5 CB SER 1 -1.360 -12.434 -1.815 1.00 0.00 C ATOM 6 OG SER 1 -0.263 -13.063 -1.198 1.00 0.00 O ATOM 14 N GLN 2 -1.626 -12.300 1.450 1.00 0.00 N ATOM 15 CA GLN 2 -1.034 -11.818 2.690 1.00 0.00 C ATOM 16 C GLN 2 0.335 -11.196 2.467 1.00 0.00 C ATOM 17 O GLN 2 0.727 -10.293 3.197 1.00 0.00 O ATOM 18 CB GLN 2 -0.934 -12.941 3.715 1.00 0.00 C ATOM 19 CG GLN 2 -0.463 -12.482 5.082 1.00 0.00 C ATOM 20 CD GLN 2 -1.435 -11.516 5.735 1.00 0.00 C ATOM 21 OE1 GLN 2 -2.654 -11.722 5.715 1.00 0.00 O ATOM 22 NE2 GLN 2 -0.898 -10.453 6.323 1.00 0.00 N ATOM 31 N GLU 3 1.060 -11.678 1.460 1.00 0.00 N ATOM 32 CA GLU 3 2.377 -11.144 1.165 1.00 0.00 C ATOM 33 C GLU 3 2.294 -9.703 0.675 1.00 0.00 C ATOM 34 O GLU 3 3.217 -8.923 0.903 1.00 0.00 O ATOM 35 CB GLU 3 3.083 -12.015 0.132 1.00 0.00 C ATOM 36 CG GLU 3 3.462 -13.391 0.657 1.00 0.00 C ATOM 37 CD GLU 3 4.418 -13.327 1.818 1.00 0.00 C ATOM 38 OE1 GLU 3 5.390 -12.618 1.727 1.00 0.00 O ATOM 39 OE2 GLU 3 4.173 -13.983 2.805 1.00 0.00 O ATOM 46 N THR 4 1.192 -9.340 0.013 1.00 0.00 N ATOM 47 CA THR 4 1.029 -7.977 -0.467 1.00 0.00 C ATOM 48 C THR 4 0.499 -7.123 0.661 1.00 0.00 C ATOM 49 O THR 4 0.717 -5.917 0.678 1.00 0.00 O ATOM 50 CB THR 4 0.084 -7.906 -1.673 1.00 0.00 C ATOM 51 OG1 THR 4 -1.223 -8.345 -1.285 1.00 0.00 O ATOM 52 CG2 THR 4 0.609 -8.805 -2.779 1.00 0.00 C ATOM 60 N ARG 5 -0.152 -7.762 1.635 1.00 0.00 N ATOM 61 CA ARG 5 -0.596 -7.061 2.832 1.00 0.00 C ATOM 62 C ARG 5 0.638 -6.715 3.676 1.00 0.00 C ATOM 63 O ARG 5 0.681 -5.671 4.330 1.00 0.00 O ATOM 64 CB ARG 5 -1.561 -7.917 3.636 1.00 0.00 C ATOM 65 CG ARG 5 -2.912 -8.157 2.978 1.00 0.00 C ATOM 66 CD ARG 5 -3.750 -9.064 3.798 1.00 0.00 C ATOM 67 NE ARG 5 -5.008 -9.401 3.156 1.00 0.00 N ATOM 68 CZ ARG 5 -5.782 -10.442 3.523 1.00 0.00 C ATOM 69 NH1 ARG 5 -5.410 -11.227 4.516 1.00 0.00 N ATOM 70 NH2 ARG 5 -6.912 -10.681 2.883 1.00 0.00 N ATOM 84 N LYS 6 1.651 -7.589 3.625 1.00 0.00 N ATOM 85 CA LYS 6 2.925 -7.340 4.288 1.00 0.00 C ATOM 86 C LYS 6 3.637 -6.185 3.596 1.00 0.00 C ATOM 87 O LYS 6 4.124 -5.266 4.258 1.00 0.00 O ATOM 88 CB LYS 6 3.809 -8.588 4.247 1.00 0.00 C ATOM 89 CG LYS 6 3.352 -9.746 5.122 1.00 0.00 C ATOM 90 CD LYS 6 4.262 -10.950 4.926 1.00 0.00 C ATOM 91 CE LYS 6 3.810 -12.149 5.743 1.00 0.00 C ATOM 92 NZ LYS 6 4.667 -13.342 5.489 1.00 0.00 N ATOM 106 N LYS 7 3.646 -6.217 2.258 1.00 0.00 N ATOM 107 CA LYS 7 4.233 -5.154 1.449 1.00 0.00 C ATOM 108 C LYS 7 3.520 -3.841 1.708 1.00 0.00 C ATOM 109 O LYS 7 4.160 -2.801 1.828 1.00 0.00 O ATOM 110 CB LYS 7 4.140 -5.497 -0.038 1.00 0.00 C ATOM 111 CG LYS 7 5.054 -6.618 -0.502 1.00 0.00 C ATOM 112 CD LYS 7 4.810 -6.959 -1.965 1.00 0.00 C ATOM 113 CE LYS 7 5.730 -8.078 -2.430 1.00 0.00 C ATOM 114 NZ LYS 7 5.455 -8.481 -3.835 1.00 0.00 N ATOM 128 N CYS 8 2.196 -3.913 1.828 1.00 0.00 N ATOM 129 CA CYS 8 1.337 -2.777 2.110 1.00 0.00 C ATOM 130 C CYS 8 1.735 -2.109 3.403 1.00 0.00 C ATOM 131 O CYS 8 1.931 -0.894 3.434 1.00 0.00 O ATOM 132 CB CYS 8 -0.125 -3.234 2.180 1.00 0.00 C ATOM 133 SG CYS 8 -1.327 -1.939 2.517 1.00 0.00 S ATOM 139 N THR 9 1.867 -2.904 4.462 1.00 0.00 N ATOM 140 CA THR 9 2.294 -2.402 5.759 1.00 0.00 C ATOM 141 C THR 9 3.660 -1.730 5.654 1.00 0.00 C ATOM 142 O THR 9 3.883 -0.670 6.248 1.00 0.00 O ATOM 143 CB THR 9 2.368 -3.533 6.799 1.00 0.00 C ATOM 144 OG1 THR 9 1.071 -4.123 6.966 1.00 0.00 O ATOM 145 CG2 THR 9 2.849 -2.983 8.132 1.00 0.00 C ATOM 153 N GLU 10 4.570 -2.333 4.886 1.00 0.00 N ATOM 154 CA GLU 10 5.888 -1.754 4.689 1.00 0.00 C ATOM 155 C GLU 10 5.794 -0.432 3.938 1.00 0.00 C ATOM 156 O GLU 10 6.544 0.498 4.235 1.00 0.00 O ATOM 157 CB GLU 10 6.800 -2.721 3.927 1.00 0.00 C ATOM 158 CG GLU 10 7.220 -3.956 4.712 1.00 0.00 C ATOM 159 CD GLU 10 8.076 -3.626 5.903 1.00 0.00 C ATOM 160 OE1 GLU 10 8.988 -2.850 5.758 1.00 0.00 O ATOM 161 OE2 GLU 10 7.817 -4.142 6.967 1.00 0.00 O ATOM 168 N MET 11 4.852 -0.332 2.994 1.00 0.00 N ATOM 169 CA MET 11 4.644 0.910 2.264 1.00 0.00 C ATOM 170 C MET 11 3.991 1.956 3.152 1.00 0.00 C ATOM 171 O MET 11 4.220 3.144 2.967 1.00 0.00 O ATOM 172 CB MET 11 3.818 0.687 1.003 1.00 0.00 C ATOM 173 CG MET 11 4.513 -0.162 -0.051 1.00 0.00 C ATOM 174 SD MET 11 6.077 0.552 -0.592 1.00 0.00 S ATOM 175 CE MET 11 7.241 -0.376 0.401 1.00 0.00 C ATOM 185 N LYS 12 3.201 1.526 4.136 1.00 0.00 N ATOM 186 CA LYS 12 2.634 2.467 5.094 1.00 0.00 C ATOM 187 C LYS 12 3.745 3.084 5.933 1.00 0.00 C ATOM 188 O LYS 12 3.707 4.270 6.251 1.00 0.00 O ATOM 189 CB LYS 12 1.607 1.788 6.002 1.00 0.00 C ATOM 190 CG LYS 12 0.305 1.415 5.318 1.00 0.00 C ATOM 191 CD LYS 12 -0.647 0.729 6.282 1.00 0.00 C ATOM 192 CE LYS 12 -1.962 0.373 5.603 1.00 0.00 C ATOM 193 NZ LYS 12 -2.901 -0.307 6.541 1.00 0.00 N ATOM 207 N LYS 13 4.750 2.277 6.268 1.00 0.00 N ATOM 208 CA LYS 13 5.903 2.768 7.008 1.00 0.00 C ATOM 209 C LYS 13 6.808 3.624 6.118 1.00 0.00 C ATOM 210 O LYS 13 7.376 4.617 6.572 1.00 0.00 O ATOM 211 CB LYS 13 6.680 1.598 7.597 1.00 0.00 C ATOM 212 CG LYS 13 5.952 0.879 8.725 1.00 0.00 C ATOM 213 CD LYS 13 6.856 -0.140 9.400 1.00 0.00 C ATOM 214 CE LYS 13 7.092 -1.336 8.495 1.00 0.00 C ATOM 215 NZ LYS 13 7.901 -2.397 9.161 1.00 0.00 N ATOM 229 N LYS 14 6.924 3.240 4.845 1.00 0.00 N ATOM 230 CA LYS 14 7.715 3.989 3.871 1.00 0.00 C ATOM 231 C LYS 14 7.055 5.312 3.509 1.00 0.00 C ATOM 232 O LYS 14 7.735 6.317 3.293 1.00 0.00 O ATOM 233 CB LYS 14 7.934 3.160 2.607 1.00 0.00 C ATOM 234 CG LYS 14 8.841 3.831 1.586 1.00 0.00 C ATOM 235 CD LYS 14 9.179 2.900 0.431 1.00 0.00 C ATOM 236 CE LYS 14 10.099 3.583 -0.572 1.00 0.00 C ATOM 237 NZ LYS 14 10.475 2.679 -1.694 1.00 0.00 N ATOM 251 N PHE 15 5.730 5.307 3.442 1.00 0.00 N ATOM 252 CA PHE 15 4.965 6.478 3.071 1.00 0.00 C ATOM 253 C PHE 15 3.918 6.779 4.131 1.00 0.00 C ATOM 254 O PHE 15 2.719 6.649 3.887 1.00 0.00 O ATOM 255 CB PHE 15 4.249 6.244 1.743 1.00 0.00 C ATOM 256 CG PHE 15 5.134 5.883 0.588 1.00 0.00 C ATOM 257 CD1 PHE 15 5.179 4.576 0.123 1.00 0.00 C ATOM 258 CD2 PHE 15 5.915 6.838 -0.039 1.00 0.00 C ATOM 259 CE1 PHE 15 5.976 4.235 -0.949 1.00 0.00 C ATOM 260 CE2 PHE 15 6.718 6.498 -1.109 1.00 0.00 C ATOM 261 CZ PHE 15 6.746 5.196 -1.565 1.00 0.00 C ATOM 271 N LYS 16 4.378 7.219 5.301 1.00 0.00 N ATOM 272 CA LYS 16 3.501 7.514 6.434 1.00 0.00 C ATOM 273 C LYS 16 2.559 8.690 6.185 1.00 0.00 C ATOM 274 O LYS 16 1.519 8.804 6.834 1.00 0.00 O ATOM 275 CB LYS 16 4.339 7.784 7.681 1.00 0.00 C ATOM 276 CG LYS 16 5.051 6.553 8.223 1.00 0.00 C ATOM 277 CD LYS 16 5.883 6.882 9.451 1.00 0.00 C ATOM 278 CE LYS 16 6.595 5.647 9.987 1.00 0.00 C ATOM 279 NZ LYS 16 7.442 5.968 11.171 1.00 0.00 N ATOM 293 N ASN 17 2.916 9.560 5.243 1.00 0.00 N ATOM 294 CA ASN 17 2.084 10.704 4.913 1.00 0.00 C ATOM 295 C ASN 17 1.179 10.439 3.706 1.00 0.00 C ATOM 296 O ASN 17 0.532 11.360 3.204 1.00 0.00 O ATOM 297 CB ASN 17 2.950 11.923 4.662 1.00 0.00 C ATOM 298 CG ASN 17 3.629 12.412 5.911 1.00 0.00 C ATOM 299 OD1 ASN 17 3.042 12.402 6.998 1.00 0.00 O ATOM 300 ND2 ASN 17 4.858 12.844 5.776 1.00 0.00 N ATOM 307 N CYS 18 1.130 9.188 3.237 1.00 0.00 N ATOM 308 CA CYS 18 0.291 8.840 2.096 1.00 0.00 C ATOM 309 C CYS 18 -0.803 7.864 2.498 1.00 0.00 C ATOM 310 O CYS 18 -0.713 7.202 3.531 1.00 0.00 O ATOM 311 CB CYS 18 1.127 8.211 0.988 1.00 0.00 C ATOM 312 SG CYS 18 2.418 9.292 0.330 1.00 0.00 S ATOM 318 N GLU 19 -1.841 7.778 1.675 1.00 0.00 N ATOM 319 CA GLU 19 -2.933 6.852 1.930 1.00 0.00 C ATOM 320 C GLU 19 -2.610 5.524 1.280 1.00 0.00 C ATOM 321 O GLU 19 -2.278 5.477 0.100 1.00 0.00 O ATOM 322 CB GLU 19 -4.254 7.401 1.394 1.00 0.00 C ATOM 323 CG GLU 19 -5.457 6.511 1.673 1.00 0.00 C ATOM 324 CD GLU 19 -6.747 7.096 1.171 1.00 0.00 C ATOM 325 OE1 GLU 19 -6.729 8.188 0.658 1.00 0.00 O ATOM 326 OE2 GLU 19 -7.755 6.442 1.296 1.00 0.00 O ATOM 333 N VAL 20 -2.673 4.437 2.044 1.00 0.00 N ATOM 334 CA VAL 20 -2.338 3.147 1.456 1.00 0.00 C ATOM 335 C VAL 20 -3.532 2.190 1.517 1.00 0.00 C ATOM 336 O VAL 20 -3.989 1.816 2.598 1.00 0.00 O ATOM 337 CB VAL 20 -1.120 2.534 2.162 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.776 1.209 1.510 1.00 0.00 C ATOM 339 CG2 VAL 20 0.064 3.499 2.114 1.00 0.00 C ATOM 349 N ARG 21 -4.028 1.810 0.340 1.00 0.00 N ATOM 350 CA ARG 21 -5.164 0.905 0.200 1.00 0.00 C ATOM 351 C ARG 21 -4.694 -0.423 -0.381 1.00 0.00 C ATOM 352 O ARG 21 -3.521 -0.568 -0.731 1.00 0.00 O ATOM 353 CB ARG 21 -6.245 1.512 -0.682 1.00 0.00 C ATOM 354 CG ARG 21 -6.869 2.781 -0.126 1.00 0.00 C ATOM 355 CD ARG 21 -8.013 3.247 -0.952 1.00 0.00 C ATOM 356 NE ARG 21 -8.566 4.488 -0.442 1.00 0.00 N ATOM 357 CZ ARG 21 -9.696 5.079 -0.869 1.00 0.00 C ATOM 358 NH1 ARG 21 -10.429 4.534 -1.815 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.055 6.222 -0.315 1.00 0.00 N ATOM 373 N CYS 22 -5.594 -1.397 -0.477 1.00 0.00 N ATOM 374 CA CYS 22 -5.186 -2.703 -0.974 1.00 0.00 C ATOM 375 C CYS 22 -6.202 -3.379 -1.872 1.00 0.00 C ATOM 376 O CYS 22 -7.323 -3.696 -1.467 1.00 0.00 O ATOM 377 CB CYS 22 -4.871 -3.636 0.193 1.00 0.00 C ATOM 378 SG CYS 22 -4.289 -5.272 -0.313 1.00 0.00 S ATOM 384 N ASP 23 -5.791 -3.615 -3.109 1.00 0.00 N ATOM 385 CA ASP 23 -6.652 -4.272 -4.058 1.00 0.00 C ATOM 386 C ASP 23 -6.547 -5.760 -3.878 1.00 0.00 C ATOM 387 O ASP 23 -5.666 -6.408 -4.437 1.00 0.00 O ATOM 388 CB ASP 23 -6.303 -3.890 -5.488 1.00 0.00 C ATOM 389 CG ASP 23 -7.236 -4.534 -6.498 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.900 -5.489 -6.152 1.00 0.00 O ATOM 391 OD2 ASP 23 -7.276 -4.071 -7.613 1.00 0.00 O ATOM 396 N GLU 24 -7.474 -6.285 -3.092 1.00 0.00 N ATOM 397 CA GLU 24 -7.560 -7.697 -2.754 1.00 0.00 C ATOM 398 C GLU 24 -7.800 -8.606 -3.963 1.00 0.00 C ATOM 399 O GLU 24 -7.445 -9.784 -3.927 1.00 0.00 O ATOM 400 CB GLU 24 -8.684 -7.897 -1.732 1.00 0.00 C ATOM 401 CG GLU 24 -8.406 -7.328 -0.342 1.00 0.00 C ATOM 402 CD GLU 24 -7.379 -8.110 0.437 1.00 0.00 C ATOM 403 OE1 GLU 24 -7.537 -9.305 0.532 1.00 0.00 O ATOM 404 OE2 GLU 24 -6.449 -7.535 0.954 1.00 0.00 O ATOM 411 N SER 25 -8.433 -8.079 -5.016 1.00 0.00 N ATOM 412 CA SER 25 -8.733 -8.908 -6.178 1.00 0.00 C ATOM 413 C SER 25 -7.553 -9.007 -7.136 1.00 0.00 C ATOM 414 O SER 25 -7.372 -10.033 -7.794 1.00 0.00 O ATOM 415 CB SER 25 -9.925 -8.339 -6.920 1.00 0.00 C ATOM 416 OG SER 25 -9.616 -7.106 -7.513 1.00 0.00 O ATOM 422 N ASN 26 -6.738 -7.959 -7.195 1.00 0.00 N ATOM 423 CA ASN 26 -5.563 -7.977 -8.058 1.00 0.00 C ATOM 424 C ASN 26 -4.261 -8.097 -7.277 1.00 0.00 C ATOM 425 O ASN 26 -3.189 -8.179 -7.878 1.00 0.00 O ATOM 426 CB ASN 26 -5.534 -6.752 -8.946 1.00 0.00 C ATOM 427 CG ASN 26 -6.648 -6.752 -9.957 1.00 0.00 C ATOM 428 OD1 ASN 26 -6.704 -7.625 -10.832 1.00 0.00 O ATOM 429 ND2 ASN 26 -7.537 -5.798 -9.855 1.00 0.00 N ATOM 436 N HIS 27 -4.359 -8.134 -5.946 1.00 0.00 N ATOM 437 CA HIS 27 -3.203 -8.278 -5.066 1.00 0.00 C ATOM 438 C HIS 27 -2.232 -7.104 -5.241 1.00 0.00 C ATOM 439 O HIS 27 -1.024 -7.302 -5.382 1.00 0.00 O ATOM 440 CB HIS 27 -2.490 -9.608 -5.353 1.00 0.00 C ATOM 441 CG HIS 27 -3.415 -10.791 -5.342 1.00 0.00 C ATOM 442 ND1 HIS 27 -3.990 -11.292 -4.189 1.00 0.00 N ATOM 443 CD2 HIS 27 -3.874 -11.562 -6.356 1.00 0.00 C ATOM 444 CE1 HIS 27 -4.766 -12.320 -4.506 1.00 0.00 C ATOM 445 NE2 HIS 27 -4.708 -12.503 -5.810 1.00 0.00 N ATOM 453 N CYS 28 -2.771 -5.882 -5.260 1.00 0.00 N ATOM 454 CA CYS 28 -1.940 -4.692 -5.464 1.00 0.00 C ATOM 455 C CYS 28 -1.970 -3.708 -4.293 1.00 0.00 C ATOM 456 O CYS 28 -2.992 -3.526 -3.631 1.00 0.00 O ATOM 457 CB CYS 28 -2.377 -3.955 -6.730 1.00 0.00 C ATOM 458 SG CYS 28 -2.189 -4.915 -8.251 1.00 0.00 S ATOM 464 N VAL 29 -0.840 -3.041 -4.069 1.00 0.00 N ATOM 465 CA VAL 29 -0.734 -2.030 -3.026 1.00 0.00 C ATOM 466 C VAL 29 -0.957 -0.663 -3.646 1.00 0.00 C ATOM 467 O VAL 29 -0.260 -0.278 -4.581 1.00 0.00 O ATOM 468 CB VAL 29 0.651 -2.073 -2.348 1.00 0.00 C ATOM 469 CG1 VAL 29 0.751 -0.974 -1.300 1.00 0.00 C ATOM 470 CG2 VAL 29 0.880 -3.443 -1.723 1.00 0.00 C ATOM 480 N GLU 30 -1.941 0.073 -3.147 1.00 0.00 N ATOM 481 CA GLU 30 -2.228 1.381 -3.717 1.00 0.00 C ATOM 482 C GLU 30 -1.800 2.502 -2.786 1.00 0.00 C ATOM 483 O GLU 30 -2.428 2.738 -1.762 1.00 0.00 O ATOM 484 CB GLU 30 -3.723 1.501 -4.015 1.00 0.00 C ATOM 485 CG GLU 30 -4.139 2.817 -4.655 1.00 0.00 C ATOM 486 CD GLU 30 -5.616 2.890 -4.929 1.00 0.00 C ATOM 487 OE1 GLU 30 -5.995 2.957 -6.076 1.00 0.00 O ATOM 488 OE2 GLU 30 -6.373 2.886 -3.990 1.00 0.00 O ATOM 495 N VAL 31 -0.744 3.220 -3.162 1.00 0.00 N ATOM 496 CA VAL 31 -0.260 4.326 -2.341 1.00 0.00 C ATOM 497 C VAL 31 -0.659 5.649 -2.982 1.00 0.00 C ATOM 498 O VAL 31 -0.446 5.849 -4.174 1.00 0.00 O ATOM 499 CB VAL 31 1.272 4.266 -2.180 1.00 0.00 C ATOM 500 CG1 VAL 31 1.754 5.450 -1.357 1.00 0.00 C ATOM 501 CG2 VAL 31 1.681 2.949 -1.538 1.00 0.00 C ATOM 511 N ARG 32 -1.248 6.560 -2.215 1.00 0.00 N ATOM 512 CA ARG 32 -1.666 7.821 -2.811 1.00 0.00 C ATOM 513 C ARG 32 -1.163 9.058 -2.077 1.00 0.00 C ATOM 514 O ARG 32 -1.403 9.251 -0.883 1.00 0.00 O ATOM 515 CB ARG 32 -3.181 7.895 -2.900 1.00 0.00 C ATOM 516 CG ARG 32 -3.705 9.178 -3.533 1.00 0.00 C ATOM 517 CD ARG 32 -5.187 9.179 -3.664 1.00 0.00 C ATOM 518 NE ARG 32 -5.685 10.444 -4.194 1.00 0.00 N ATOM 519 CZ ARG 32 -6.968 10.693 -4.527 1.00 0.00 C ATOM 520 NH1 ARG 32 -7.875 9.750 -4.387 1.00 0.00 N ATOM 521 NH2 ARG 32 -7.324 11.881 -4.993 1.00 0.00 N ATOM 535 N CYS 33 -0.464 9.901 -2.830 1.00 0.00 N ATOM 536 CA CYS 33 0.056 11.168 -2.344 1.00 0.00 C ATOM 537 C CYS 33 -0.692 12.257 -3.078 1.00 0.00 C ATOM 538 O CYS 33 -0.556 12.377 -4.293 1.00 0.00 O ATOM 539 CB CYS 33 1.553 11.299 -2.610 1.00 0.00 C ATOM 540 SG CYS 33 2.274 12.838 -1.996 1.00 0.00 S ATOM 546 N SER 34 -1.469 13.055 -2.349 1.00 0.00 N ATOM 547 CA SER 34 -2.325 14.045 -2.991 1.00 0.00 C ATOM 548 C SER 34 -3.194 13.336 -4.038 1.00 0.00 C ATOM 549 O SER 34 -3.990 12.469 -3.680 1.00 0.00 O ATOM 550 CB SER 34 -1.483 15.154 -3.604 1.00 0.00 C ATOM 551 OG SER 34 -2.287 16.222 -4.022 1.00 0.00 O ATOM 557 N ASP 35 -3.053 13.684 -5.316 1.00 0.00 N ATOM 558 CA ASP 35 -3.823 13.013 -6.363 1.00 0.00 C ATOM 559 C ASP 35 -3.006 12.002 -7.183 1.00 0.00 C ATOM 560 O ASP 35 -3.496 11.481 -8.186 1.00 0.00 O ATOM 561 CB ASP 35 -4.463 14.040 -7.290 1.00 0.00 C ATOM 562 CG ASP 35 -5.539 14.855 -6.585 1.00 0.00 C ATOM 563 OD1 ASP 35 -6.198 14.313 -5.725 1.00 0.00 O ATOM 564 OD2 ASP 35 -5.698 16.006 -6.914 1.00 0.00 O ATOM 569 N THR 36 -1.764 11.737 -6.773 1.00 0.00 N ATOM 570 CA THR 36 -0.903 10.798 -7.490 1.00 0.00 C ATOM 571 C THR 36 -0.885 9.417 -6.845 1.00 0.00 C ATOM 572 O THR 36 -0.518 9.260 -5.680 1.00 0.00 O ATOM 573 CB THR 36 0.544 11.317 -7.583 1.00 0.00 C ATOM 574 OG1 THR 36 0.570 12.555 -8.306 1.00 0.00 O ATOM 575 CG2 THR 36 1.422 10.296 -8.294 1.00 0.00 C ATOM 583 N LYS 37 -1.273 8.408 -7.615 1.00 0.00 N ATOM 584 CA LYS 37 -1.272 7.045 -7.108 1.00 0.00 C ATOM 585 C LYS 37 -0.064 6.249 -7.575 1.00 0.00 C ATOM 586 O LYS 37 0.429 6.432 -8.690 1.00 0.00 O ATOM 587 CB LYS 37 -2.534 6.304 -7.513 1.00 0.00 C ATOM 588 CG LYS 37 -3.822 6.810 -6.892 1.00 0.00 C ATOM 589 CD LYS 37 -4.964 5.902 -7.300 1.00 0.00 C ATOM 590 CE LYS 37 -6.280 6.284 -6.650 1.00 0.00 C ATOM 591 NZ LYS 37 -7.347 5.303 -6.993 1.00 0.00 N ATOM 605 N TYR 38 0.389 5.352 -6.709 1.00 0.00 N ATOM 606 CA TYR 38 1.515 4.484 -6.978 1.00 0.00 C ATOM 607 C TYR 38 1.086 3.032 -6.803 1.00 0.00 C ATOM 608 O TYR 38 0.865 2.584 -5.678 1.00 0.00 O ATOM 609 CB TYR 38 2.665 4.791 -6.021 1.00 0.00 C ATOM 610 CG TYR 38 3.130 6.229 -6.051 1.00 0.00 C ATOM 611 CD1 TYR 38 2.578 7.141 -5.158 1.00 0.00 C ATOM 612 CD2 TYR 38 4.094 6.640 -6.956 1.00 0.00 C ATOM 613 CE1 TYR 38 2.991 8.456 -5.168 1.00 0.00 C ATOM 614 CE2 TYR 38 4.508 7.959 -6.966 1.00 0.00 C ATOM 615 CZ TYR 38 3.964 8.863 -6.076 1.00 0.00 C ATOM 616 OH TYR 38 4.384 10.174 -6.089 1.00 0.00 O ATOM 626 N THR 39 0.939 2.297 -7.906 1.00 0.00 N ATOM 627 CA THR 39 0.556 0.894 -7.785 1.00 0.00 C ATOM 628 C THR 39 1.812 0.071 -7.569 1.00 0.00 C ATOM 629 O THR 39 2.698 0.040 -8.424 1.00 0.00 O ATOM 630 CB THR 39 -0.193 0.384 -9.031 1.00 0.00 C ATOM 631 OG1 THR 39 -1.390 1.150 -9.225 1.00 0.00 O ATOM 632 CG2 THR 39 -0.561 -1.081 -8.841 1.00 0.00 C ATOM 640 N LEU 40 1.892 -0.580 -6.414 1.00 0.00 N ATOM 641 CA LEU 40 3.079 -1.325 -6.047 1.00 0.00 C ATOM 642 C LEU 40 2.803 -2.812 -5.822 1.00 0.00 C ATOM 643 O LEU 40 1.724 -3.199 -5.369 1.00 0.00 O ATOM 644 CB LEU 40 3.679 -0.689 -4.785 1.00 0.00 C ATOM 645 CG LEU 40 4.021 0.808 -4.920 1.00 0.00 C ATOM 646 CD1 LEU 40 4.472 1.355 -3.579 1.00 0.00 C ATOM 647 CD2 LEU 40 5.108 0.987 -5.968 1.00 0.00 C ATOM 659 N CYS 41 3.802 -3.638 -6.129 1.00 0.00 N ATOM 660 CA CYS 41 3.733 -5.091 -5.960 1.00 0.00 C ATOM 661 C CYS 41 5.034 -5.738 -6.435 1.00 0.00 C ATOM 662 O CYS 41 5.627 -6.561 -5.736 1.00 0.00 O ATOM 663 OXT CYS 41 5.467 -5.465 -7.553 1.00 0.00 O ATOM 664 CB CYS 41 2.560 -5.702 -6.744 1.00 0.00 C ATOM 665 SG CYS 41 2.362 -7.483 -6.495 1.00 0.00 S TER END