####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 333), selected 41 , name T0955TS476_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS476_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 13 - 31 4.97 14.01 LCS_AVERAGE: 43.37 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 6 - 16 1.97 17.22 LCS_AVERAGE: 15.41 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 9 - 16 0.92 16.44 LCS_AVERAGE: 10.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 0 5 18 0 0 3 3 3 5 5 6 6 6 11 17 21 24 25 27 28 29 30 31 LCS_GDT Q 2 Q 2 5 5 18 4 4 5 5 5 7 9 11 15 16 18 21 22 24 26 27 28 29 30 31 LCS_GDT E 3 E 3 5 5 18 4 4 5 7 8 10 11 12 15 16 18 21 22 24 26 27 28 29 30 31 LCS_GDT T 4 T 4 5 5 18 4 4 5 5 5 6 8 11 11 14 15 18 22 24 26 27 28 28 30 31 LCS_GDT R 5 R 5 5 5 18 4 4 5 5 5 5 7 10 11 14 18 21 22 24 26 27 28 29 30 31 LCS_GDT K 6 K 6 5 11 18 3 3 6 9 10 10 11 12 15 16 19 21 22 24 26 27 28 29 30 31 LCS_GDT K 7 K 7 3 11 18 3 3 4 4 4 6 8 11 12 14 18 21 22 23 26 27 28 29 30 31 LCS_GDT C 8 C 8 6 11 18 4 5 9 9 10 10 11 12 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT T 9 T 9 8 11 18 4 5 9 9 10 10 11 12 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT E 10 E 10 8 11 18 4 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT M 11 M 11 8 11 18 5 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT K 12 K 12 8 11 18 5 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT K 13 K 13 8 11 19 4 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT K 14 K 14 8 11 19 5 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT F 15 F 15 8 11 19 5 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT K 16 K 16 8 11 19 5 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT N 17 N 17 4 8 19 4 4 6 7 7 8 11 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT C 18 C 18 4 6 19 4 4 5 7 8 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT E 19 E 19 3 6 19 3 3 5 5 6 8 10 11 14 17 19 21 22 24 26 27 28 29 30 31 LCS_GDT V 20 V 20 3 3 19 3 3 3 4 4 4 7 8 10 13 17 21 22 22 23 25 28 29 30 31 LCS_GDT R 21 R 21 3 3 19 3 3 3 4 4 6 9 12 14 15 18 21 22 22 23 25 27 27 28 31 LCS_GDT C 22 C 22 3 5 19 1 3 3 3 6 8 10 12 14 15 18 21 22 22 23 25 27 27 28 30 LCS_GDT D 23 D 23 3 5 19 3 3 4 4 5 6 9 12 14 15 18 21 22 22 23 25 27 27 28 30 LCS_GDT E 24 E 24 3 5 19 3 3 4 5 6 8 10 12 14 15 18 21 22 22 23 25 27 27 28 30 LCS_GDT S 25 S 25 3 5 19 3 3 4 5 6 8 10 12 14 15 18 21 22 22 23 25 27 27 28 30 LCS_GDT N 26 N 26 3 5 19 3 3 4 5 6 8 10 12 14 15 18 21 22 22 23 25 27 27 28 30 LCS_GDT H 27 H 27 3 5 19 3 3 4 5 5 5 9 9 10 12 14 16 20 21 23 25 27 27 28 30 LCS_GDT C 28 C 28 3 5 19 3 3 4 5 6 8 10 12 14 15 18 21 22 22 23 25 27 27 28 30 LCS_GDT V 29 V 29 3 5 19 1 3 6 7 7 7 9 11 14 15 17 21 22 22 23 25 27 27 28 30 LCS_GDT E 30 E 30 3 3 19 3 3 6 7 7 7 10 12 14 15 18 21 22 22 23 25 27 27 28 31 LCS_GDT V 31 V 31 3 3 19 3 3 6 7 7 8 10 12 14 15 18 21 22 24 25 27 28 29 30 31 LCS_GDT R 32 R 32 3 4 18 3 4 4 5 8 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT C 33 C 33 4 5 18 3 4 5 5 5 5 12 12 16 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT S 34 S 34 4 5 18 3 4 5 5 5 8 11 12 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT D 35 D 35 4 5 18 3 4 5 5 5 5 6 7 9 13 17 21 22 24 26 27 28 28 30 31 LCS_GDT T 36 T 36 4 5 18 3 4 5 5 7 8 9 12 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT K 37 K 37 4 5 18 0 3 5 5 8 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT Y 38 Y 38 3 3 11 2 3 4 5 8 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT T 39 T 39 3 3 11 3 4 4 5 8 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 LCS_GDT L 40 L 40 3 3 11 3 3 3 3 5 6 7 8 13 14 16 16 19 20 22 24 27 29 30 31 LCS_GDT C 41 C 41 3 3 11 3 3 3 3 3 3 4 8 11 12 13 13 14 15 19 22 23 29 29 31 LCS_AVERAGE LCS_A: 23.16 ( 10.71 15.41 43.37 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 9 9 10 10 12 13 17 18 19 21 22 24 26 27 28 29 30 31 GDT PERCENT_AT 12.20 17.07 21.95 21.95 24.39 24.39 29.27 31.71 41.46 43.90 46.34 51.22 53.66 58.54 63.41 65.85 68.29 70.73 73.17 75.61 GDT RMS_LOCAL 0.22 0.61 1.01 1.01 1.38 1.38 2.48 2.63 3.46 3.52 3.73 4.05 4.20 4.53 4.90 5.06 5.22 5.90 5.84 6.12 GDT RMS_ALL_AT 16.10 16.08 16.76 16.76 16.87 16.87 13.42 13.34 13.54 13.57 13.55 13.66 13.41 13.77 13.56 13.39 13.23 12.57 12.84 12.69 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 13.618 0 0.060 0.701 16.455 0.000 0.000 16.455 LGA Q 2 Q 2 14.793 0 0.687 1.045 16.092 0.000 0.000 16.092 LGA E 3 E 3 15.331 0 0.101 0.712 17.303 0.000 0.000 16.310 LGA T 4 T 4 16.625 0 0.071 0.092 17.498 0.000 0.000 17.498 LGA R 5 R 5 14.459 0 0.555 1.028 20.713 0.000 0.000 20.713 LGA K 6 K 6 10.770 0 0.536 1.555 12.448 0.000 0.000 5.756 LGA K 7 K 7 9.525 0 0.538 0.494 19.673 0.000 0.000 19.673 LGA C 8 C 8 6.935 0 0.422 0.716 7.879 0.455 0.303 7.879 LGA T 9 T 9 6.188 0 0.174 0.859 10.364 0.909 0.519 10.364 LGA E 10 E 10 2.953 0 0.125 1.126 4.370 29.091 24.848 4.174 LGA M 11 M 11 1.841 0 0.020 1.248 9.327 57.273 30.909 9.327 LGA K 12 K 12 2.053 0 0.239 0.613 8.337 67.727 32.121 8.337 LGA K 13 K 13 2.399 0 0.176 1.010 5.413 40.000 20.606 3.770 LGA K 14 K 14 3.562 0 0.190 1.616 9.390 16.364 7.879 9.390 LGA F 15 F 15 3.796 0 0.551 0.558 8.419 29.545 10.744 8.115 LGA K 16 K 16 1.557 0 0.036 1.691 9.459 38.636 21.616 9.459 LGA N 17 N 17 3.662 0 0.053 1.283 5.855 12.727 12.045 5.855 LGA C 18 C 18 2.716 0 0.436 1.015 5.299 17.727 24.848 2.540 LGA E 19 E 19 6.037 0 0.516 1.341 10.382 0.455 0.202 6.608 LGA V 20 V 20 11.967 0 0.554 1.036 14.827 0.000 0.000 12.584 LGA R 21 R 21 16.295 0 0.582 1.429 19.870 0.000 0.000 18.075 LGA C 22 C 22 17.996 0 0.650 0.948 19.275 0.000 0.000 14.911 LGA D 23 D 23 22.775 0 0.524 1.341 25.823 0.000 0.000 23.843 LGA E 24 E 24 29.887 0 0.645 0.755 32.643 0.000 0.000 32.643 LGA S 25 S 25 32.070 0 0.398 0.387 33.666 0.000 0.000 33.666 LGA N 26 N 26 27.520 0 0.195 1.012 28.847 0.000 0.000 23.423 LGA H 27 H 27 25.776 0 0.236 0.809 34.027 0.000 0.000 34.027 LGA C 28 C 28 19.199 0 0.640 1.011 21.571 0.000 0.000 19.647 LGA V 29 V 29 16.266 0 0.616 0.578 18.936 0.000 0.000 16.872 LGA E 30 E 30 13.300 0 0.612 1.247 14.590 0.000 0.000 13.484 LGA V 31 V 31 7.594 0 0.601 0.618 10.389 1.818 1.039 5.477 LGA R 32 R 32 1.581 0 0.563 1.192 8.113 32.727 21.818 8.113 LGA C 33 C 33 5.354 0 0.065 0.828 8.106 4.545 3.030 8.106 LGA S 34 S 34 5.723 0 0.150 0.694 7.480 1.364 0.909 6.640 LGA D 35 D 35 7.472 0 0.122 0.459 10.307 0.000 0.000 10.307 LGA T 36 T 36 6.552 0 0.615 1.227 10.932 0.000 0.000 10.932 LGA K 37 K 37 3.362 0 0.597 1.703 4.528 20.455 13.535 4.528 LGA Y 38 Y 38 1.937 0 0.687 1.174 8.331 34.545 20.909 8.331 LGA T 39 T 39 0.511 0 0.605 1.235 4.851 61.818 43.377 2.809 LGA L 40 L 40 6.904 0 0.597 1.035 11.533 0.455 0.227 10.768 LGA C 41 C 41 9.001 2 0.049 0.654 10.628 0.000 0.000 9.188 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 163 99.39 335 333 99.40 41 41 SUMMARY(RMSD_GDC): 10.352 10.237 10.954 11.430 7.109 1.774 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 13 2.63 34.146 29.943 0.475 LGA_LOCAL RMSD: 2.634 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.340 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 10.352 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.787872 * X + 0.612066 * Y + 0.068063 * Z + -37.693760 Y_new = -0.217409 * X + 0.379842 * Y + -0.899140 * Z + 26.571123 Z_new = -0.576186 * X + 0.693610 * Y + 0.432336 * Z + -13.751760 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.269245 0.614055 1.013411 [DEG: -15.4266 35.1828 58.0642 ] ZXZ: 0.075553 1.123714 -0.693186 [DEG: 4.3289 64.3841 -39.7166 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS476_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS476_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 13 2.63 29.943 10.35 REMARK ---------------------------------------------------------- MOLECULE T0955TS476_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 7.442 -5.655 2.122 1.00 0.51 ATOM 2 CA SER 1 8.465 -5.453 3.160 1.00 0.51 ATOM 3 C SER 1 9.840 -5.781 2.596 1.00 0.51 ATOM 4 O SER 1 9.916 -6.727 1.814 1.00 0.51 ATOM 5 CB SER 1 8.127 -6.278 4.398 1.00 0.51 ATOM 6 OG SER 1 9.182 -6.195 5.331 1.00 0.51 ATOM 7 N GLN 2 10.927 -5.041 2.832 1.00 0.47 ATOM 8 CA GLN 2 12.232 -5.128 2.210 1.00 0.47 ATOM 9 C GLN 2 13.271 -4.176 2.787 1.00 0.47 ATOM 10 O GLN 2 12.956 -3.455 3.731 1.00 0.47 ATOM 11 CB GLN 2 12.112 -4.891 0.707 1.00 0.47 ATOM 12 CG GLN 2 11.561 -3.522 0.318 1.00 0.47 ATOM 13 CD GLN 2 10.061 -3.382 0.538 1.00 0.47 ATOM 14 OE1 GLN 2 9.198 -3.796 -0.233 1.00 0.47 ATOM 15 NE2 GLN 2 9.601 -2.831 1.664 1.00 0.47 ATOM 16 N GLU 3 14.499 -4.053 2.276 1.00 0.73 ATOM 17 CA GLU 3 15.647 -3.344 2.808 1.00 0.73 ATOM 18 C GLU 3 15.500 -1.830 2.742 1.00 0.73 ATOM 19 O GLU 3 15.719 -1.174 3.757 1.00 0.73 ATOM 20 CB GLU 3 16.982 -3.700 2.159 1.00 0.73 ATOM 21 CG GLU 3 17.289 -5.178 1.934 1.00 0.73 ATOM 22 CD GLU 3 16.261 -5.827 1.019 1.00 0.73 ATOM 23 OE1 GLU 3 15.920 -5.202 -0.009 1.00 0.73 ATOM 24 OE2 GLU 3 15.542 -6.755 1.451 1.00 0.73 ATOM 25 N THR 4 15.014 -1.262 1.634 1.00 0.53 ATOM 26 CA THR 4 14.550 0.104 1.491 1.00 0.53 ATOM 27 C THR 4 13.650 0.435 2.675 1.00 0.53 ATOM 28 O THR 4 13.577 1.572 3.139 1.00 0.53 ATOM 29 CB THR 4 13.934 0.422 0.131 1.00 0.53 ATOM 30 OG1 THR 4 13.391 1.698 -0.128 1.00 0.53 ATOM 31 CG2 THR 4 12.848 -0.534 -0.354 1.00 0.53 ATOM 32 N ARG 5 12.868 -0.530 3.165 1.00 0.31 ATOM 33 CA ARG 5 11.652 -0.380 3.942 1.00 0.31 ATOM 34 C ARG 5 11.312 -1.432 4.992 1.00 0.31 ATOM 35 O ARG 5 10.591 -2.372 4.661 1.00 0.31 ATOM 36 CB ARG 5 10.621 0.055 2.902 1.00 0.31 ATOM 37 CG ARG 5 10.853 1.321 2.082 1.00 0.31 ATOM 38 CD ARG 5 9.870 1.700 0.977 1.00 0.31 ATOM 39 NE ARG 5 9.067 2.811 1.489 1.00 0.31 ATOM 40 CZ ARG 5 7.812 3.004 1.064 1.00 0.31 ATOM 41 NH1 ARG 5 7.253 2.417 -0.003 1.00 0.31 ATOM 42 NH2 ARG 5 7.053 3.674 1.941 1.00 0.31 ATOM 43 N LYS 6 11.626 -1.377 6.291 1.00 0.54 ATOM 44 CA LYS 6 11.436 -2.274 7.415 1.00 0.54 ATOM 45 C LYS 6 10.199 -2.406 8.297 1.00 0.54 ATOM 46 O LYS 6 9.621 -1.403 8.711 1.00 0.54 ATOM 47 CB LYS 6 12.677 -2.471 8.284 1.00 0.54 ATOM 48 CG LYS 6 13.675 -3.571 7.936 1.00 0.54 ATOM 49 CD LYS 6 13.263 -4.980 7.519 1.00 0.54 ATOM 50 CE LYS 6 12.946 -5.363 6.076 1.00 0.54 ATOM 51 NZ LYS 6 11.572 -5.056 5.653 1.00 0.54 ATOM 52 N LYS 7 9.729 -3.601 8.669 1.00 0.61 ATOM 53 CA LYS 7 8.425 -3.994 9.166 1.00 0.61 ATOM 54 C LYS 7 7.313 -3.357 8.342 1.00 0.61 ATOM 55 O LYS 7 6.784 -2.319 8.736 1.00 0.61 ATOM 56 CB LYS 7 8.233 -3.786 10.666 1.00 0.61 ATOM 57 CG LYS 7 6.875 -4.194 11.232 1.00 0.61 ATOM 58 CD LYS 7 6.714 -3.865 12.713 1.00 0.61 ATOM 59 CE LYS 7 7.538 -4.798 13.598 1.00 0.61 ATOM 60 NZ LYS 7 7.438 -4.455 15.026 1.00 0.61 ATOM 61 N CYS 8 7.126 -3.864 7.122 1.00 0.24 ATOM 62 CA CYS 8 6.311 -3.280 6.075 1.00 0.24 ATOM 63 C CYS 8 6.300 -1.757 6.067 1.00 0.24 ATOM 64 O CYS 8 5.272 -1.139 5.798 1.00 0.24 ATOM 65 CB CYS 8 4.955 -3.976 5.990 1.00 0.24 ATOM 66 SG CYS 8 3.969 -3.779 7.495 1.00 0.24 ATOM 67 N THR 9 7.408 -1.045 6.289 1.00 0.30 ATOM 68 CA THR 9 7.491 0.394 6.139 1.00 0.30 ATOM 69 C THR 9 7.233 0.833 4.704 1.00 0.30 ATOM 70 O THR 9 7.073 2.024 4.447 1.00 0.30 ATOM 71 CB THR 9 8.780 0.947 6.742 1.00 0.30 ATOM 72 OG1 THR 9 8.814 2.257 7.263 1.00 0.30 ATOM 73 CG2 THR 9 9.888 1.195 5.724 1.00 0.30 ATOM 74 N GLU 10 7.133 -0.108 3.762 1.00 0.32 ATOM 75 CA GLU 10 6.649 0.183 2.428 1.00 0.32 ATOM 76 C GLU 10 5.218 0.701 2.473 1.00 0.32 ATOM 77 O GLU 10 4.982 1.865 2.156 1.00 0.32 ATOM 78 CB GLU 10 6.977 -0.854 1.356 1.00 0.32 ATOM 79 CG GLU 10 6.467 -2.281 1.532 1.00 0.32 ATOM 80 CD GLU 10 4.949 -2.386 1.589 1.00 0.32 ATOM 81 OE1 GLU 10 4.269 -1.707 0.790 1.00 0.32 ATOM 82 OE2 GLU 10 4.486 -2.973 2.591 1.00 0.32 ATOM 83 N MET 11 4.291 -0.030 3.095 1.00 0.20 ATOM 84 CA MET 11 2.927 0.419 3.288 1.00 0.20 ATOM 85 C MET 11 2.827 1.311 4.517 1.00 0.20 ATOM 86 O MET 11 2.003 2.221 4.576 1.00 0.20 ATOM 87 CB MET 11 2.003 -0.791 3.384 1.00 0.20 ATOM 88 CG MET 11 2.268 -1.696 4.584 1.00 0.20 ATOM 89 SD MET 11 1.689 -1.154 6.211 1.00 0.20 ATOM 90 CE MET 11 -0.096 -1.292 5.951 1.00 0.20 ATOM 91 N LYS 12 3.665 1.068 5.528 1.00 0.35 ATOM 92 CA LYS 12 3.537 1.813 6.764 1.00 0.35 ATOM 93 C LYS 12 4.081 3.204 6.473 1.00 0.35 ATOM 94 O LYS 12 3.306 4.149 6.329 1.00 0.35 ATOM 95 CB LYS 12 4.080 1.157 8.030 1.00 0.35 ATOM 96 CG LYS 12 3.658 2.013 9.221 1.00 0.35 ATOM 97 CD LYS 12 4.266 1.459 10.506 1.00 0.35 ATOM 98 CE LYS 12 3.983 2.375 11.692 1.00 0.35 ATOM 99 NZ LYS 12 4.352 1.800 12.995 1.00 0.35 ATOM 100 N LYS 13 5.381 3.379 6.227 1.00 0.30 ATOM 101 CA LYS 13 5.889 4.715 5.982 1.00 0.30 ATOM 102 C LYS 13 5.532 5.145 4.566 1.00 0.30 ATOM 103 O LYS 13 5.700 6.342 4.345 1.00 0.30 ATOM 104 CB LYS 13 7.311 4.822 6.527 1.00 0.30 ATOM 105 CG LYS 13 7.579 4.652 8.020 1.00 0.30 ATOM 106 CD LYS 13 6.987 3.499 8.826 1.00 0.30 ATOM 107 CE LYS 13 7.830 2.755 9.859 1.00 0.30 ATOM 108 NZ LYS 13 7.763 1.287 9.807 1.00 0.30 ATOM 109 N LYS 14 4.984 4.432 3.578 1.00 0.24 ATOM 110 CA LYS 14 4.335 5.058 2.442 1.00 0.24 ATOM 111 C LYS 14 3.006 5.680 2.845 1.00 0.24 ATOM 112 O LYS 14 2.981 6.908 2.794 1.00 0.24 ATOM 113 CB LYS 14 4.357 4.686 0.961 1.00 0.24 ATOM 114 CG LYS 14 5.372 5.323 0.017 1.00 0.24 ATOM 115 CD LYS 14 6.316 6.497 0.260 1.00 0.24 ATOM 116 CE LYS 14 6.040 7.894 0.807 1.00 0.24 ATOM 117 NZ LYS 14 5.689 8.058 2.227 1.00 0.24 ATOM 118 N PHE 15 2.017 4.935 3.347 1.00 0.11 ATOM 119 CA PHE 15 0.773 5.518 3.808 1.00 0.11 ATOM 120 C PHE 15 1.002 6.377 5.045 1.00 0.11 ATOM 121 O PHE 15 0.992 7.601 4.931 1.00 0.11 ATOM 122 CB PHE 15 -0.340 4.475 3.857 1.00 0.11 ATOM 123 CG PHE 15 -0.473 3.649 2.598 1.00 0.11 ATOM 124 CD1 PHE 15 -0.181 2.280 2.580 1.00 0.11 ATOM 125 CD2 PHE 15 -0.842 4.255 1.392 1.00 0.11 ATOM 126 CE1 PHE 15 -0.125 1.554 1.383 1.00 0.11 ATOM 127 CE2 PHE 15 -0.844 3.531 0.193 1.00 0.11 ATOM 128 CZ PHE 15 -0.451 2.187 0.179 1.00 0.11 ATOM 129 N LYS 16 1.416 5.930 6.233 1.00 0.35 ATOM 130 CA LYS 16 1.589 6.621 7.495 1.00 0.35 ATOM 131 C LYS 16 2.662 7.700 7.515 1.00 0.35 ATOM 132 O LYS 16 2.683 8.518 8.434 1.00 0.35 ATOM 133 CB LYS 16 1.792 5.667 8.671 1.00 0.35 ATOM 134 CG LYS 16 0.728 4.615 8.968 1.00 0.35 ATOM 135 CD LYS 16 0.471 3.681 7.788 1.00 0.35 ATOM 136 CE LYS 16 -0.209 2.317 7.826 1.00 0.35 ATOM 137 NZ LYS 16 -0.403 1.857 6.442 1.00 0.35 ATOM 138 N ASN 17 3.581 7.773 6.549 1.00 0.28 ATOM 139 CA ASN 17 4.347 8.968 6.256 1.00 0.28 ATOM 140 C ASN 17 3.810 9.758 5.072 1.00 0.28 ATOM 141 O ASN 17 4.123 10.944 4.981 1.00 0.28 ATOM 142 CB ASN 17 5.862 8.773 6.238 1.00 0.28 ATOM 143 CG ASN 17 6.706 10.032 6.109 1.00 0.28 ATOM 144 OD1 ASN 17 7.562 10.146 5.235 1.00 0.28 ATOM 145 ND2 ASN 17 6.524 11.024 6.984 1.00 0.28 ATOM 146 N CYS 18 3.010 9.253 4.129 1.00 0.11 ATOM 147 CA CYS 18 2.074 10.004 3.317 1.00 0.11 ATOM 148 C CYS 18 1.114 10.720 4.257 1.00 0.11 ATOM 149 O CYS 18 1.401 11.887 4.514 1.00 0.11 ATOM 150 CB CYS 18 1.425 9.171 2.216 1.00 0.11 ATOM 151 SG CYS 18 0.103 9.973 1.273 1.00 0.11 ATOM 152 N GLU 19 0.108 10.091 4.874 1.00 0.24 ATOM 153 CA GLU 19 -0.934 10.508 5.791 1.00 0.24 ATOM 154 C GLU 19 -0.682 11.655 6.761 1.00 0.24 ATOM 155 O GLU 19 -1.624 12.214 7.321 1.00 0.24 ATOM 156 CB GLU 19 -1.367 9.245 6.530 1.00 0.24 ATOM 157 CG GLU 19 -1.938 8.057 5.760 1.00 0.24 ATOM 158 CD GLU 19 -3.402 8.025 5.346 1.00 0.24 ATOM 159 OE1 GLU 19 -4.062 9.085 5.275 1.00 0.24 ATOM 160 OE2 GLU 19 -3.880 6.913 5.037 1.00 0.24 ATOM 161 N VAL 20 0.564 12.062 7.024 1.00 0.17 ATOM 162 CA VAL 20 1.160 13.023 7.931 1.00 0.17 ATOM 163 C VAL 20 2.139 14.031 7.344 1.00 0.17 ATOM 164 O VAL 20 2.730 14.856 8.038 1.00 0.17 ATOM 165 CB VAL 20 1.907 12.282 9.036 1.00 0.17 ATOM 166 CG1 VAL 20 1.089 11.209 9.749 1.00 0.17 ATOM 167 CG2 VAL 20 3.166 11.650 8.449 1.00 0.17 ATOM 168 N ARG 21 2.505 13.847 6.073 1.00 0.28 ATOM 169 CA ARG 21 3.083 14.740 5.090 1.00 0.28 ATOM 170 C ARG 21 2.057 15.258 4.093 1.00 0.28 ATOM 171 O ARG 21 2.335 15.978 3.136 1.00 0.28 ATOM 172 CB ARG 21 4.095 14.005 4.216 1.00 0.28 ATOM 173 CG ARG 21 5.464 13.655 4.791 1.00 0.28 ATOM 174 CD ARG 21 6.326 13.009 3.709 1.00 0.28 ATOM 175 NE ARG 21 5.642 11.927 3.003 1.00 0.28 ATOM 176 CZ ARG 21 5.203 11.888 1.737 1.00 0.28 ATOM 177 NH1 ARG 21 5.346 12.896 0.865 1.00 0.28 ATOM 178 NH2 ARG 21 4.581 10.806 1.250 1.00 0.28 ATOM 179 N CYS 22 0.888 14.621 4.188 1.00 0.14 ATOM 180 CA CYS 22 -0.207 14.687 3.240 1.00 0.14 ATOM 181 C CYS 22 -1.474 15.151 3.945 1.00 0.14 ATOM 182 O CYS 22 -2.528 15.425 3.376 1.00 0.14 ATOM 183 CB CYS 22 -0.149 13.385 2.446 1.00 0.14 ATOM 184 SG CYS 22 -1.301 12.290 3.314 1.00 0.14 ATOM 185 N ASP 23 -1.463 15.332 5.268 1.00 0.29 ATOM 186 CA ASP 23 -2.468 16.083 5.993 1.00 0.29 ATOM 187 C ASP 23 -2.478 17.550 5.587 1.00 0.29 ATOM 188 O ASP 23 -3.510 18.103 5.210 1.00 0.29 ATOM 189 CB ASP 23 -2.244 15.827 7.480 1.00 0.29 ATOM 190 CG ASP 23 -0.859 16.153 8.021 1.00 0.29 ATOM 191 OD1 ASP 23 0.088 16.281 7.216 1.00 0.29 ATOM 192 OD2 ASP 23 -0.732 16.216 9.264 1.00 0.29 ATOM 193 N GLU 24 -1.311 18.197 5.589 1.00 0.43 ATOM 194 CA GLU 24 -1.013 19.559 5.190 1.00 0.43 ATOM 195 C GLU 24 -1.655 19.962 3.869 1.00 0.43 ATOM 196 O GLU 24 -1.500 19.207 2.911 1.00 0.43 ATOM 197 CB GLU 24 0.503 19.708 5.093 1.00 0.43 ATOM 198 CG GLU 24 1.271 19.470 6.391 1.00 0.43 ATOM 199 CD GLU 24 2.483 18.551 6.333 1.00 0.43 ATOM 200 OE1 GLU 24 3.052 18.333 5.242 1.00 0.43 ATOM 201 OE2 GLU 24 3.026 18.184 7.397 1.00 0.43 ATOM 202 N SER 25 -2.383 21.068 3.700 1.00 0.55 ATOM 203 CA SER 25 -3.145 21.426 2.520 1.00 0.55 ATOM 204 C SER 25 -3.869 20.291 1.808 1.00 0.55 ATOM 205 O SER 25 -3.976 20.274 0.584 1.00 0.55 ATOM 206 CB SER 25 -2.366 22.276 1.520 1.00 0.55 ATOM 207 OG SER 25 -1.819 23.427 2.124 1.00 0.55 ATOM 208 N ASN 26 -4.341 19.286 2.553 1.00 0.35 ATOM 209 CA ASN 26 -4.927 18.064 2.041 1.00 0.35 ATOM 210 C ASN 26 -4.017 17.291 1.097 1.00 0.35 ATOM 211 O ASN 26 -4.554 16.448 0.379 1.00 0.35 ATOM 212 CB ASN 26 -6.340 18.369 1.549 1.00 0.35 ATOM 213 CG ASN 26 -7.133 17.185 1.013 1.00 0.35 ATOM 214 OD1 ASN 26 -7.657 17.173 -0.098 1.00 0.35 ATOM 215 ND2 ASN 26 -7.256 16.110 1.797 1.00 0.35 ATOM 216 N HIS 27 -2.694 17.463 1.111 1.00 0.22 ATOM 217 CA HIS 27 -1.622 16.849 0.352 1.00 0.22 ATOM 218 C HIS 27 -1.780 15.348 0.149 1.00 0.22 ATOM 219 O HIS 27 -1.130 14.725 -0.686 1.00 0.22 ATOM 220 CB HIS 27 -0.253 17.137 0.963 1.00 0.22 ATOM 221 CG HIS 27 0.446 18.461 0.829 1.00 0.22 ATOM 222 ND1 HIS 27 1.565 18.780 1.596 1.00 0.22 ATOM 223 CD2 HIS 27 -0.106 19.615 0.338 1.00 0.22 ATOM 224 CE1 HIS 27 1.632 20.112 1.638 1.00 0.22 ATOM 225 NE2 HIS 27 0.664 20.634 0.865 1.00 0.22 ATOM 226 N CYS 28 -2.629 14.673 0.928 1.00 0.15 ATOM 227 CA CYS 28 -3.043 13.286 0.873 1.00 0.15 ATOM 228 C CYS 28 -3.797 13.062 -0.430 1.00 0.15 ATOM 229 O CYS 28 -3.752 11.926 -0.899 1.00 0.15 ATOM 230 CB CYS 28 -3.985 12.857 1.995 1.00 0.15 ATOM 231 SG CYS 28 -3.911 11.055 2.148 1.00 0.15 ATOM 232 N VAL 29 -4.472 14.049 -1.025 1.00 0.18 ATOM 233 CA VAL 29 -5.178 13.794 -2.264 1.00 0.18 ATOM 234 C VAL 29 -4.227 13.920 -3.447 1.00 0.18 ATOM 235 O VAL 29 -4.429 13.267 -4.468 1.00 0.18 ATOM 236 CB VAL 29 -6.487 14.578 -2.280 1.00 0.18 ATOM 237 CG1 VAL 29 -7.252 14.237 -3.555 1.00 0.18 ATOM 238 CG2 VAL 29 -7.327 14.121 -1.091 1.00 0.18 ATOM 239 N GLU 30 -3.088 14.597 -3.287 1.00 0.31 ATOM 240 CA GLU 30 -1.998 14.811 -4.219 1.00 0.31 ATOM 241 C GLU 30 -0.961 13.702 -4.116 1.00 0.31 ATOM 242 O GLU 30 -0.454 13.218 -5.126 1.00 0.31 ATOM 243 CB GLU 30 -1.355 16.172 -3.968 1.00 0.31 ATOM 244 CG GLU 30 -2.274 17.383 -4.090 1.00 0.31 ATOM 245 CD GLU 30 -3.478 17.371 -3.158 1.00 0.31 ATOM 246 OE1 GLU 30 -3.286 16.975 -1.987 1.00 0.31 ATOM 247 OE2 GLU 30 -4.628 17.649 -3.560 1.00 0.31 ATOM 248 N VAL 31 -0.676 13.217 -2.905 1.00 0.13 ATOM 249 CA VAL 31 0.170 12.075 -2.619 1.00 0.13 ATOM 250 C VAL 31 -0.639 10.789 -2.693 1.00 0.13 ATOM 251 O VAL 31 -0.201 9.932 -3.459 1.00 0.13 ATOM 252 CB VAL 31 0.977 12.176 -1.327 1.00 0.13 ATOM 253 CG1 VAL 31 1.984 11.034 -1.231 1.00 0.13 ATOM 254 CG2 VAL 31 1.811 13.450 -1.240 1.00 0.13 ATOM 255 N ARG 32 -1.826 10.578 -2.120 1.00 0.21 ATOM 256 CA ARG 32 -2.643 9.417 -2.418 1.00 0.21 ATOM 257 C ARG 32 -2.961 9.355 -3.905 1.00 0.21 ATOM 258 O ARG 32 -3.123 8.238 -4.393 1.00 0.21 ATOM 259 CB ARG 32 -3.930 9.217 -1.624 1.00 0.21 ATOM 260 CG ARG 32 -5.138 9.911 -2.247 1.00 0.21 ATOM 261 CD ARG 32 -6.422 10.140 -1.455 1.00 0.21 ATOM 262 NE ARG 32 -6.268 10.500 -0.045 1.00 0.21 ATOM 263 CZ ARG 32 -6.660 9.741 0.988 1.00 0.21 ATOM 264 NH1 ARG 32 -6.938 8.437 0.861 1.00 0.21 ATOM 265 NH2 ARG 32 -6.817 10.259 2.214 1.00 0.21 ATOM 266 N CYS 33 -3.129 10.449 -4.651 1.00 0.19 ATOM 267 CA CYS 33 -3.279 10.319 -6.086 1.00 0.19 ATOM 268 C CYS 33 -1.937 9.975 -6.716 1.00 0.19 ATOM 269 O CYS 33 -1.845 8.922 -7.344 1.00 0.19 ATOM 270 CB CYS 33 -4.084 11.422 -6.768 1.00 0.19 ATOM 271 SG CYS 33 -3.104 12.900 -7.131 1.00 0.19 ATOM 272 N SER 34 -0.890 10.786 -6.548 1.00 0.32 ATOM 273 CA SER 34 0.374 10.577 -7.227 1.00 0.32 ATOM 274 C SER 34 1.065 9.283 -6.822 1.00 0.32 ATOM 275 O SER 34 1.633 8.611 -7.681 1.00 0.32 ATOM 276 CB SER 34 1.323 11.766 -7.105 1.00 0.32 ATOM 277 OG SER 34 1.843 11.900 -5.801 1.00 0.32 ATOM 278 N ASP 35 0.958 8.855 -5.561 1.00 0.24 ATOM 279 CA ASP 35 1.327 7.556 -5.033 1.00 0.24 ATOM 280 C ASP 35 0.438 6.452 -5.588 1.00 0.24 ATOM 281 O ASP 35 1.016 5.488 -6.086 1.00 0.24 ATOM 282 CB ASP 35 1.516 7.515 -3.519 1.00 0.24 ATOM 283 CG ASP 35 0.375 7.264 -2.544 1.00 0.24 ATOM 284 OD1 ASP 35 -0.514 6.430 -2.820 1.00 0.24 ATOM 285 OD2 ASP 35 0.464 7.716 -1.381 1.00 0.24 ATOM 286 N THR 36 -0.891 6.581 -5.607 1.00 0.31 ATOM 287 CA THR 36 -1.777 5.575 -6.159 1.00 0.31 ATOM 288 C THR 36 -1.415 5.325 -7.617 1.00 0.31 ATOM 289 O THR 36 -1.382 4.153 -7.986 1.00 0.31 ATOM 290 CB THR 36 -3.276 5.732 -5.918 1.00 0.31 ATOM 291 OG1 THR 36 -3.924 4.490 -5.754 1.00 0.31 ATOM 292 CG2 THR 36 -4.093 6.482 -6.966 1.00 0.31 ATOM 293 N LYS 37 -0.994 6.300 -8.426 1.00 0.48 ATOM 294 CA LYS 37 -0.510 6.055 -9.770 1.00 0.48 ATOM 295 C LYS 37 0.534 4.947 -9.798 1.00 0.48 ATOM 296 O LYS 37 0.388 4.010 -10.578 1.00 0.48 ATOM 297 CB LYS 37 0.002 7.277 -10.529 1.00 0.48 ATOM 298 CG LYS 37 -0.726 8.601 -10.318 1.00 0.48 ATOM 299 CD LYS 37 -2.234 8.589 -10.548 1.00 0.48 ATOM 300 CE LYS 37 -2.842 9.898 -10.051 1.00 0.48 ATOM 301 NZ LYS 37 -4.312 9.843 -10.012 1.00 0.48 ATOM 302 N TYR 38 1.511 4.904 -8.888 1.00 0.35 ATOM 303 CA TYR 38 2.598 3.945 -8.831 1.00 0.35 ATOM 304 C TYR 38 2.217 2.614 -8.197 1.00 0.35 ATOM 305 O TYR 38 3.008 1.672 -8.225 1.00 0.35 ATOM 306 CB TYR 38 3.816 4.564 -8.150 1.00 0.35 ATOM 307 CG TYR 38 4.494 5.807 -8.672 1.00 0.35 ATOM 308 CD1 TYR 38 5.886 5.875 -8.802 1.00 0.35 ATOM 309 CD2 TYR 38 3.766 6.968 -8.961 1.00 0.35 ATOM 310 CE1 TYR 38 6.533 7.049 -9.205 1.00 0.35 ATOM 311 CE2 TYR 38 4.370 8.174 -9.340 1.00 0.35 ATOM 312 CZ TYR 38 5.773 8.208 -9.460 1.00 0.35 ATOM 313 OH TYR 38 6.424 9.349 -9.828 1.00 0.35 ATOM 314 N THR 39 1.050 2.480 -7.561 1.00 0.52 ATOM 315 CA THR 39 0.462 1.284 -6.991 1.00 0.52 ATOM 316 C THR 39 -0.613 0.660 -7.873 1.00 0.52 ATOM 317 O THR 39 -0.742 -0.559 -7.948 1.00 0.52 ATOM 318 CB THR 39 0.055 1.384 -5.523 1.00 0.52 ATOM 319 OG1 THR 39 -1.332 1.287 -5.285 1.00 0.52 ATOM 320 CG2 THR 39 0.440 2.658 -4.777 1.00 0.52 ATOM 321 N LEU 40 -1.384 1.476 -8.597 1.00 0.35 ATOM 322 CA LEU 40 -2.409 1.142 -9.567 1.00 0.35 ATOM 323 C LEU 40 -1.843 0.873 -10.954 1.00 0.35 ATOM 324 O LEU 40 -2.208 -0.109 -11.599 1.00 0.35 ATOM 325 CB LEU 40 -3.486 2.223 -9.630 1.00 0.35 ATOM 326 CG LEU 40 -4.203 2.674 -8.361 1.00 0.35 ATOM 327 CD1 LEU 40 -5.343 3.635 -8.685 1.00 0.35 ATOM 328 CD2 LEU 40 -4.711 1.562 -7.448 1.00 0.35 ATOM 329 N CYS 41 -0.967 1.746 -11.457 1.00 0.43 ATOM 330 CA CYS 41 -0.396 1.791 -12.788 1.00 0.43 ATOM 331 C CYS 41 0.944 2.501 -12.928 1.00 0.43 ATOM 332 CB CYS 41 -1.466 2.291 -13.756 1.00 0.43 ATOM 333 SG CYS 41 -2.386 3.756 -13.226 1.00 0.43 TER END