####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS473_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS473_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 9 - 41 4.81 9.57 LCS_AVERAGE: 76.38 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.89 10.62 LCS_AVERAGE: 36.88 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.75 11.33 LCS_AVERAGE: 23.20 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 22 3 3 7 14 17 17 17 19 21 22 22 23 24 26 27 28 30 31 33 34 LCS_GDT Q 2 Q 2 15 17 22 13 14 15 15 17 17 17 19 21 22 22 23 24 26 27 28 29 31 32 34 LCS_GDT E 3 E 3 15 17 22 13 14 15 15 17 17 17 19 21 22 22 23 24 26 27 28 30 31 33 34 LCS_GDT T 4 T 4 15 17 22 13 14 15 15 17 17 17 19 21 22 22 23 24 26 27 28 30 31 33 35 LCS_GDT R 5 R 5 15 17 26 13 14 15 15 17 17 17 19 21 22 22 23 24 26 27 28 30 32 34 35 LCS_GDT K 6 K 6 15 17 27 13 14 15 15 17 17 17 19 21 22 22 24 25 26 29 29 32 33 34 35 LCS_GDT K 7 K 7 15 17 27 13 14 15 15 17 17 17 19 21 22 22 24 25 26 31 32 33 34 34 35 LCS_GDT C 8 C 8 15 17 27 13 14 15 15 17 17 17 19 21 22 22 24 26 30 32 32 33 34 34 35 LCS_GDT T 9 T 9 15 17 33 13 14 15 15 17 17 17 19 21 22 25 27 29 31 32 32 33 34 34 35 LCS_GDT E 10 E 10 15 17 33 13 14 15 15 17 17 17 19 21 24 26 27 29 31 32 32 33 34 34 35 LCS_GDT M 11 M 11 15 17 33 13 14 15 15 17 17 17 19 24 25 27 29 30 31 32 32 33 34 34 35 LCS_GDT K 12 K 12 15 17 33 13 14 15 15 17 17 17 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT K 13 K 13 15 17 33 13 14 15 15 17 17 17 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT K 14 K 14 15 17 33 13 14 15 15 17 17 17 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT F 15 F 15 15 17 33 9 14 15 15 17 17 17 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT K 16 K 16 15 17 33 4 7 15 15 17 17 17 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT N 17 N 17 5 17 33 4 4 6 8 11 13 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT C 18 C 18 6 10 33 4 5 7 8 11 13 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT E 19 E 19 6 10 33 3 5 7 8 11 13 16 19 24 25 26 28 29 31 32 32 33 34 34 35 LCS_GDT V 20 V 20 6 10 33 3 5 7 8 11 13 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT R 21 R 21 6 10 33 3 5 7 8 11 13 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT C 22 C 22 6 10 33 3 5 7 8 11 13 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT D 23 D 23 6 10 33 3 5 7 7 11 13 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT E 24 E 24 6 10 33 3 4 7 8 11 13 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT S 25 S 25 4 5 33 3 4 4 5 7 10 14 17 21 25 26 29 30 31 32 32 33 34 34 35 LCS_GDT N 26 N 26 4 16 33 3 4 6 8 11 14 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT H 27 H 27 7 16 33 5 11 13 14 15 16 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT C 28 C 28 8 16 33 6 11 13 14 15 16 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT V 29 V 29 8 16 33 6 11 13 14 15 16 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT E 30 E 30 8 16 33 6 11 13 14 15 16 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT V 31 V 31 8 16 33 6 10 13 14 15 16 17 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT R 32 R 32 8 16 33 4 11 13 14 15 16 16 18 21 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT C 33 C 33 8 16 33 3 10 13 14 15 16 16 18 21 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT S 34 S 34 8 16 33 3 7 13 14 15 16 16 18 20 23 27 29 30 31 32 32 33 34 34 35 LCS_GDT D 35 D 35 8 16 33 3 6 9 11 15 16 16 17 18 21 27 29 30 31 31 32 32 34 34 34 LCS_GDT T 36 T 36 6 16 33 3 11 13 14 15 16 16 18 21 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT K 37 K 37 6 16 33 4 11 13 14 15 16 16 18 21 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT Y 38 Y 38 6 16 33 6 11 13 14 15 16 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT T 39 T 39 6 16 33 6 11 13 14 17 17 17 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT L 40 L 40 6 16 33 6 11 13 14 15 16 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_GDT C 41 C 41 6 16 33 6 11 13 14 15 16 16 19 24 26 27 29 30 31 32 32 33 34 34 35 LCS_AVERAGE LCS_A: 45.49 ( 23.20 36.88 76.38 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 14 15 15 17 17 17 19 24 26 27 29 30 31 32 32 33 34 34 35 GDT PERCENT_AT 31.71 34.15 36.59 36.59 41.46 41.46 41.46 46.34 58.54 63.41 65.85 70.73 73.17 75.61 78.05 78.05 80.49 82.93 82.93 85.37 GDT RMS_LOCAL 0.24 0.35 0.75 0.75 1.35 1.35 1.35 2.38 3.43 3.72 3.79 4.01 4.18 4.31 4.64 4.54 4.88 5.05 5.05 5.61 GDT RMS_ALL_AT 11.65 11.57 11.33 11.33 11.08 11.08 11.08 10.43 9.56 10.22 10.04 10.45 10.20 10.18 9.34 9.88 9.10 9.33 9.33 8.45 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 1.852 0 0.127 0.163 4.323 35.000 29.394 3.439 LGA Q 2 Q 2 2.771 0 0.250 0.961 4.970 41.818 22.828 4.533 LGA E 3 E 3 1.177 0 0.046 1.446 7.177 70.000 39.596 6.831 LGA T 4 T 4 1.361 0 0.033 1.123 3.799 65.455 57.922 3.799 LGA R 5 R 5 1.696 0 0.036 0.731 5.082 58.182 30.413 4.458 LGA K 6 K 6 1.006 0 0.032 1.210 4.475 73.636 52.121 3.701 LGA K 7 K 7 0.571 0 0.062 0.660 1.900 86.364 70.101 1.900 LGA C 8 C 8 1.150 0 0.048 0.743 3.613 69.545 59.091 3.613 LGA T 9 T 9 0.529 0 0.034 0.068 1.008 77.727 82.078 0.735 LGA E 10 E 10 1.307 0 0.040 0.994 3.893 59.091 46.263 3.689 LGA M 11 M 11 2.200 0 0.130 1.034 7.322 41.364 26.364 7.322 LGA K 12 K 12 1.884 0 0.058 0.700 3.246 47.727 43.838 3.028 LGA K 13 K 13 1.974 0 0.029 0.619 2.507 41.818 50.303 2.337 LGA K 14 K 14 2.818 0 0.046 0.619 5.680 30.000 19.192 5.680 LGA F 15 F 15 2.914 0 0.472 1.093 11.858 35.909 13.554 11.858 LGA K 16 K 16 0.807 0 0.118 1.263 6.616 50.455 32.727 6.616 LGA N 17 N 17 4.773 0 0.076 0.488 7.777 7.273 3.636 7.777 LGA C 18 C 18 4.928 0 0.675 0.647 7.095 1.818 7.576 2.570 LGA E 19 E 19 8.440 0 0.268 1.318 15.449 0.000 0.000 13.934 LGA V 20 V 20 8.378 0 0.119 0.119 9.686 0.000 0.000 9.686 LGA R 21 R 21 10.930 0 0.040 1.456 19.970 0.000 0.000 18.262 LGA C 22 C 22 13.475 0 0.119 0.186 15.011 0.000 0.000 11.206 LGA D 23 D 23 19.382 0 0.526 1.015 21.231 0.000 0.000 21.231 LGA E 24 E 24 21.842 0 0.661 0.680 25.007 0.000 0.000 24.411 LGA S 25 S 25 19.676 0 0.062 0.638 20.206 0.000 0.000 18.499 LGA N 26 N 26 19.934 0 0.084 1.187 20.124 0.000 0.000 18.890 LGA H 27 H 27 20.371 0 0.483 0.492 28.140 0.000 0.000 28.140 LGA C 28 C 28 14.631 0 0.052 0.069 16.594 0.000 0.000 15.671 LGA V 29 V 29 11.156 0 0.095 0.119 14.339 0.000 0.000 10.913 LGA E 30 E 30 5.459 0 0.066 1.146 7.763 0.000 5.657 3.763 LGA V 31 V 31 3.053 0 0.030 0.056 4.871 25.455 24.156 2.643 LGA R 32 R 32 6.723 0 0.200 1.285 12.795 0.000 0.000 12.795 LGA C 33 C 33 10.629 0 0.489 0.533 14.828 0.000 0.000 6.824 LGA S 34 S 34 16.826 0 0.158 0.182 18.576 0.000 0.000 18.576 LGA D 35 D 35 17.934 0 0.124 1.155 19.453 0.000 0.000 18.790 LGA T 36 T 36 12.738 0 0.167 1.124 15.510 0.000 0.000 15.510 LGA K 37 K 37 6.749 0 0.063 1.141 9.108 0.000 11.313 1.718 LGA Y 38 Y 38 5.663 0 0.061 1.393 7.084 3.636 5.152 3.301 LGA T 39 T 39 7.123 0 0.115 0.100 10.507 0.000 0.260 4.991 LGA L 40 L 40 11.984 0 0.130 0.992 13.551 0.000 0.000 10.122 LGA C 41 C 41 17.131 0 0.537 1.337 20.977 0.000 0.000 15.990 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 7.647 7.498 8.674 22.494 17.891 9.623 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 19 2.38 48.780 47.443 0.766 LGA_LOCAL RMSD: 2.380 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.431 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 7.647 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.507664 * X + 0.783431 * Y + 0.358487 * Z + -1.225897 Y_new = -0.690782 * X + -0.121466 * Y + -0.712788 * Z + 2.363032 Z_new = -0.514876 * X + -0.609493 * Y + 0.602844 * Z + 1.103033 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.204571 0.540863 -0.790882 [DEG: -126.3126 30.9892 -45.3142 ] ZXZ: 0.465994 0.923735 -2.440148 [DEG: 26.6995 52.9261 -139.8102 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS473_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS473_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 19 2.38 47.443 7.65 REMARK ---------------------------------------------------------- MOLECULE T0955TS473_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -2.430 -13.169 -0.096 1.00 5.22 ATOM 5 CA SER 1 -1.120 -13.791 0.178 1.00 5.22 ATOM 6 CB SER 1 -0.275 -13.833 -1.113 1.00 5.82 ATOM 7 OG SER 1 -1.030 -14.368 -2.193 1.00 5.82 ATOM 9 C SER 1 -0.361 -13.035 1.231 1.00 5.22 ATOM 10 O SER 1 -0.692 -11.896 1.574 1.00 5.22 ATOM 11 N GLN 2 0.703 -13.691 1.757 1.00 4.01 ATOM 13 CA GLN 2 1.558 -13.130 2.774 1.00 4.01 ATOM 14 CB GLN 2 2.542 -14.169 3.363 1.00 4.58 ATOM 15 CG GLN 2 3.397 -13.687 4.549 1.00 4.58 ATOM 16 CD GLN 2 2.514 -13.310 5.742 1.00 4.58 ATOM 17 OE1 GLN 2 1.635 -14.045 6.194 1.00 4.58 ATOM 18 NE2 GLN 2 2.747 -12.079 6.264 1.00 4.58 ATOM 21 C GLN 2 2.321 -11.966 2.203 1.00 4.01 ATOM 22 O GLN 2 2.470 -10.945 2.875 1.00 4.01 ATOM 23 N GLU 3 2.771 -12.084 0.930 1.00 4.01 ATOM 25 CA GLU 3 3.502 -11.041 0.254 1.00 4.01 ATOM 26 CB GLU 3 4.102 -11.490 -1.092 1.00 4.58 ATOM 27 CG GLU 3 5.281 -12.473 -0.970 1.00 4.58 ATOM 28 CD GLU 3 6.440 -11.874 -0.168 1.00 4.58 ATOM 29 OE1 GLU 3 6.917 -10.760 -0.511 1.00 4.58 ATOM 30 OE2 GLU 3 6.866 -12.534 0.815 1.00 4.58 ATOM 31 C GLU 3 2.629 -9.835 0.020 1.00 4.01 ATOM 32 O GLU 3 3.106 -8.706 0.140 1.00 4.01 ATOM 33 N THR 4 1.323 -10.054 -0.279 1.00 4.01 ATOM 35 CA THR 4 0.365 -8.998 -0.516 1.00 4.01 ATOM 36 CB THR 4 -0.958 -9.549 -1.011 1.00 4.58 ATOM 37 CG2 THR 4 -1.951 -8.402 -1.297 1.00 4.58 ATOM 38 OG1 THR 4 -0.748 -10.257 -2.226 1.00 4.58 ATOM 40 C THR 4 0.158 -8.243 0.786 1.00 4.01 ATOM 41 O THR 4 0.114 -7.012 0.776 1.00 4.01 ATOM 42 N ARG 5 0.076 -8.970 1.934 1.00 4.01 ATOM 44 CA ARG 5 -0.102 -8.363 3.235 1.00 4.01 ATOM 45 CB ARG 5 -0.367 -9.369 4.365 1.00 4.58 ATOM 46 CG ARG 5 -1.776 -9.961 4.327 1.00 4.58 ATOM 47 CD ARG 5 -2.162 -10.720 5.602 1.00 4.58 ATOM 48 NE ARG 5 -1.387 -11.997 5.673 1.00 4.58 ATOM 50 CZ ARG 5 -1.856 -13.155 5.106 1.00 4.58 ATOM 51 NH1 ARG 5 -1.102 -14.288 5.190 1.00 4.58 ATOM 54 NH2 ARG 5 -3.064 -13.209 4.467 1.00 4.58 ATOM 57 C ARG 5 1.089 -7.529 3.622 1.00 4.01 ATOM 58 O ARG 5 0.919 -6.446 4.185 1.00 4.01 ATOM 59 N LYS 6 2.316 -8.004 3.282 1.00 4.01 ATOM 61 CA LYS 6 3.550 -7.303 3.571 1.00 4.01 ATOM 62 CB LYS 6 4.809 -8.067 3.141 1.00 4.58 ATOM 63 CG LYS 6 5.149 -9.305 3.961 1.00 4.58 ATOM 64 CD LYS 6 6.399 -9.984 3.415 1.00 4.58 ATOM 65 CE LYS 6 6.801 -11.264 4.135 1.00 4.58 ATOM 66 NZ LYS 6 7.972 -11.840 3.447 1.00 4.58 ATOM 70 C LYS 6 3.573 -6.018 2.795 1.00 4.01 ATOM 71 O LYS 6 3.949 -4.981 3.344 1.00 4.01 ATOM 72 N LYS 7 3.124 -6.064 1.511 1.00 4.01 ATOM 74 CA LYS 7 3.077 -4.901 0.664 1.00 4.01 ATOM 75 CB LYS 7 2.668 -5.154 -0.794 1.00 4.58 ATOM 76 CG LYS 7 3.705 -5.853 -1.665 1.00 4.58 ATOM 77 CD LYS 7 3.210 -5.990 -3.102 1.00 4.58 ATOM 78 CE LYS 7 4.214 -6.629 -4.055 1.00 4.58 ATOM 79 NZ LYS 7 3.616 -6.721 -5.402 1.00 4.58 ATOM 83 C LYS 7 2.110 -3.897 1.201 1.00 4.01 ATOM 84 O LYS 7 2.442 -2.718 1.201 1.00 4.01 ATOM 85 N CYS 8 0.932 -4.339 1.714 1.00 4.01 ATOM 87 CA CYS 8 -0.076 -3.459 2.262 1.00 4.01 ATOM 88 CB CYS 8 -1.385 -4.185 2.616 1.00 4.58 ATOM 89 SG CYS 8 -2.288 -4.734 1.134 1.00 4.58 ATOM 90 C CYS 8 0.426 -2.744 3.490 1.00 4.01 ATOM 91 O CYS 8 0.147 -1.556 3.659 1.00 4.01 ATOM 92 N THR 9 1.216 -3.439 4.346 1.00 4.01 ATOM 94 CA THR 9 1.776 -2.869 5.553 1.00 4.01 ATOM 95 CB THR 9 2.451 -3.937 6.384 1.00 4.58 ATOM 96 CG2 THR 9 3.033 -3.339 7.683 1.00 4.58 ATOM 97 OG1 THR 9 1.489 -4.922 6.737 1.00 4.58 ATOM 99 C THR 9 2.778 -1.800 5.157 1.00 4.01 ATOM 100 O THR 9 2.783 -0.708 5.732 1.00 4.01 ATOM 101 N GLU 10 3.604 -2.084 4.118 1.00 4.01 ATOM 103 CA GLU 10 4.602 -1.162 3.628 1.00 4.01 ATOM 104 CB GLU 10 5.568 -1.794 2.605 1.00 4.58 ATOM 105 CG GLU 10 6.546 -2.825 3.203 1.00 4.58 ATOM 106 CD GLU 10 7.413 -2.212 4.308 1.00 4.58 ATOM 107 OE1 GLU 10 8.068 -1.162 4.071 1.00 4.58 ATOM 108 OE2 GLU 10 7.426 -2.797 5.423 1.00 4.58 ATOM 109 C GLU 10 3.968 0.058 3.014 1.00 4.01 ATOM 110 O GLU 10 4.487 1.161 3.175 1.00 4.01 ATOM 111 N MET 11 2.804 -0.120 2.338 1.00 4.01 ATOM 113 CA MET 11 2.035 0.921 1.687 1.00 4.01 ATOM 114 CB MET 11 0.730 0.393 1.063 1.00 4.58 ATOM 115 CG MET 11 0.844 -0.522 -0.149 1.00 4.58 ATOM 116 SD MET 11 -0.771 -1.186 -0.660 1.00 4.58 ATOM 117 CE MET 11 -0.105 -2.422 -1.807 1.00 4.58 ATOM 118 C MET 11 1.543 1.882 2.730 1.00 4.01 ATOM 119 O MET 11 1.749 3.087 2.587 1.00 4.01 ATOM 120 N LYS 12 1.070 1.343 3.885 1.00 4.01 ATOM 122 CA LYS 12 0.559 2.122 4.984 1.00 4.01 ATOM 123 CB LYS 12 -0.096 1.250 6.069 1.00 4.58 ATOM 124 CG LYS 12 -1.414 0.632 5.600 1.00 4.58 ATOM 125 CD LYS 12 -2.097 -0.264 6.632 1.00 4.58 ATOM 126 CE LYS 12 -3.367 -0.929 6.099 1.00 4.58 ATOM 127 NZ LYS 12 -3.964 -1.790 7.138 1.00 4.58 ATOM 131 C LYS 12 1.658 2.934 5.607 1.00 4.01 ATOM 132 O LYS 12 1.437 4.096 5.946 1.00 4.01 ATOM 133 N LYS 13 2.878 2.349 5.718 1.00 4.01 ATOM 135 CA LYS 13 4.028 3.014 6.286 1.00 4.01 ATOM 136 CB LYS 13 5.259 2.098 6.387 1.00 4.58 ATOM 137 CG LYS 13 5.163 0.982 7.422 1.00 4.58 ATOM 138 CD LYS 13 6.410 0.103 7.416 1.00 4.58 ATOM 139 CE LYS 13 6.344 -1.087 8.366 1.00 4.58 ATOM 140 NZ LYS 13 7.562 -1.904 8.208 1.00 4.58 ATOM 144 C LYS 13 4.452 4.173 5.420 1.00 4.01 ATOM 145 O LYS 13 4.733 5.252 5.940 1.00 4.01 ATOM 146 N LYS 14 4.452 3.981 4.075 1.00 4.01 ATOM 148 CA LYS 14 4.841 4.984 3.105 1.00 4.01 ATOM 149 CB LYS 14 4.870 4.427 1.667 1.00 4.58 ATOM 150 CG LYS 14 5.998 3.430 1.404 1.00 4.58 ATOM 151 CD LYS 14 5.996 2.843 -0.007 1.00 4.58 ATOM 152 CE LYS 14 7.066 1.767 -0.198 1.00 4.58 ATOM 153 NZ LYS 14 6.999 1.203 -1.560 1.00 4.58 ATOM 157 C LYS 14 3.872 6.136 3.103 1.00 4.01 ATOM 158 O LYS 14 4.278 7.295 3.022 1.00 4.01 ATOM 159 N PHE 15 2.566 5.818 3.244 1.00 4.01 ATOM 161 CA PHE 15 1.446 6.725 3.257 1.00 4.01 ATOM 162 CB PHE 15 0.196 5.815 3.285 1.00 4.58 ATOM 163 CG PHE 15 -1.168 6.384 3.160 1.00 4.58 ATOM 164 CD1 PHE 15 -1.628 6.804 1.908 1.00 4.58 ATOM 165 CE1 PHE 15 -2.924 7.300 1.764 1.00 4.58 ATOM 166 CZ PHE 15 -3.776 7.362 2.869 1.00 4.58 ATOM 167 CE2 PHE 15 -3.337 6.907 4.115 1.00 4.58 ATOM 168 CD2 PHE 15 -2.037 6.410 4.257 1.00 4.58 ATOM 169 C PHE 15 1.575 7.624 4.469 1.00 4.01 ATOM 170 O PHE 15 1.424 8.841 4.350 1.00 4.01 ATOM 171 N LYS 16 1.933 7.035 5.639 1.00 5.22 ATOM 173 CA LYS 16 2.122 7.748 6.881 1.00 5.22 ATOM 174 CB LYS 16 2.284 6.826 8.097 1.00 5.82 ATOM 175 CG LYS 16 1.004 6.106 8.512 1.00 5.82 ATOM 176 CD LYS 16 1.216 5.187 9.712 1.00 5.82 ATOM 177 CE LYS 16 -0.024 4.394 10.115 1.00 5.82 ATOM 178 NZ LYS 16 0.309 3.511 11.248 1.00 5.82 ATOM 182 C LYS 16 3.342 8.627 6.830 1.00 5.22 ATOM 183 O LYS 16 3.298 9.750 7.328 1.00 5.22 ATOM 184 N ASN 17 4.445 8.152 6.194 1.00 5.22 ATOM 186 CA ASN 17 5.687 8.890 6.066 1.00 5.22 ATOM 187 CB ASN 17 6.818 8.058 5.418 1.00 5.82 ATOM 188 CG ASN 17 7.357 7.002 6.389 1.00 5.82 ATOM 189 OD1 ASN 17 7.245 7.078 7.613 1.00 5.82 ATOM 190 ND2 ASN 17 7.963 5.937 5.804 1.00 5.82 ATOM 193 C ASN 17 5.476 10.124 5.231 1.00 5.22 ATOM 194 O ASN 17 6.015 11.186 5.547 1.00 5.22 ATOM 195 N CYS 18 4.653 10.005 4.161 1.00 5.22 ATOM 197 CA CYS 18 4.302 11.081 3.265 1.00 5.22 ATOM 198 CB CYS 18 3.675 10.582 1.951 1.00 5.82 ATOM 199 SG CYS 18 4.839 9.625 0.936 1.00 5.82 ATOM 200 C CYS 18 3.316 12.037 3.900 1.00 5.22 ATOM 201 O CYS 18 3.129 13.151 3.403 1.00 5.22 ATOM 202 N GLU 19 2.692 11.619 5.033 1.00 5.22 ATOM 204 CA GLU 19 1.697 12.335 5.787 1.00 5.22 ATOM 205 CB GLU 19 2.201 13.632 6.475 1.00 5.82 ATOM 206 CG GLU 19 3.143 13.421 7.668 1.00 5.82 ATOM 207 CD GLU 19 2.376 12.784 8.827 1.00 5.82 ATOM 208 OE1 GLU 19 1.320 13.330 9.247 1.00 5.82 ATOM 209 OE2 GLU 19 2.846 11.728 9.322 1.00 5.82 ATOM 210 C GLU 19 0.421 12.550 5.037 1.00 5.22 ATOM 211 O GLU 19 -0.260 13.567 5.190 1.00 5.22 ATOM 212 N VAL 20 0.074 11.550 4.190 1.00 5.22 ATOM 214 CA VAL 20 -1.157 11.576 3.455 1.00 5.22 ATOM 215 CB VAL 20 -1.113 10.900 2.100 1.00 5.82 ATOM 216 CG1 VAL 20 -2.510 10.982 1.461 1.00 5.82 ATOM 217 CG2 VAL 20 -0.027 11.549 1.225 1.00 5.82 ATOM 218 C VAL 20 -2.012 10.771 4.394 1.00 5.22 ATOM 219 O VAL 20 -1.710 9.606 4.666 1.00 5.22 ATOM 220 N ARG 21 -3.071 11.403 4.943 1.00 5.22 ATOM 222 CA ARG 21 -3.941 10.730 5.870 1.00 5.22 ATOM 223 CB ARG 21 -3.806 11.270 7.313 1.00 5.82 ATOM 224 CG ARG 21 -2.437 10.989 7.947 1.00 5.82 ATOM 225 CD ARG 21 -2.223 11.610 9.329 1.00 5.82 ATOM 226 NE ARG 21 -0.794 11.374 9.715 1.00 5.82 ATOM 228 CZ ARG 21 -0.376 10.241 10.367 1.00 5.82 ATOM 229 NH1 ARG 21 0.954 10.082 10.629 1.00 5.82 ATOM 232 NH2 ARG 21 -1.247 9.268 10.764 1.00 5.82 ATOM 235 C ARG 21 -5.362 10.918 5.445 1.00 5.22 ATOM 236 O ARG 21 -5.788 12.040 5.159 1.00 5.22 ATOM 237 N CYS 22 -6.117 9.795 5.357 1.00 5.22 ATOM 239 CA CYS 22 -7.511 9.843 4.992 1.00 5.22 ATOM 240 CB CYS 22 -8.043 8.527 4.393 1.00 5.82 ATOM 241 SG CYS 22 -7.229 8.094 2.830 1.00 5.82 ATOM 242 C CYS 22 -8.243 10.118 6.272 1.00 5.22 ATOM 243 O CYS 22 -8.165 9.330 7.220 1.00 5.22 ATOM 244 N ASP 23 -8.954 11.269 6.334 1.00 5.22 ATOM 246 CA ASP 23 -9.683 11.636 7.520 1.00 5.22 ATOM 247 CB ASP 23 -10.042 13.138 7.568 1.00 5.82 ATOM 248 CG ASP 23 -8.761 13.967 7.659 1.00 5.82 ATOM 249 OD1 ASP 23 -7.893 13.671 8.523 1.00 5.82 ATOM 250 OD2 ASP 23 -8.633 14.919 6.847 1.00 5.82 ATOM 251 C ASP 23 -10.938 10.823 7.619 1.00 5.22 ATOM 252 O ASP 23 -11.202 10.213 8.657 1.00 5.22 ATOM 253 N GLU 24 -11.724 10.793 6.519 1.00 5.22 ATOM 255 CA GLU 24 -12.946 10.039 6.445 1.00 5.22 ATOM 256 CB GLU 24 -14.058 10.691 5.596 1.00 5.82 ATOM 257 CG GLU 24 -14.546 12.054 6.116 1.00 5.82 ATOM 258 CD GLU 24 -15.665 12.639 5.242 1.00 5.82 ATOM 259 OE1 GLU 24 -16.042 12.050 4.192 1.00 5.82 ATOM 260 OE2 GLU 24 -16.168 13.723 5.636 1.00 5.82 ATOM 261 C GLU 24 -12.650 8.687 5.869 1.00 5.22 ATOM 262 O GLU 24 -11.724 8.525 5.070 1.00 5.22 ATOM 263 N SER 25 -13.468 7.691 6.270 1.00 5.22 ATOM 265 CA SER 25 -13.366 6.319 5.844 1.00 5.22 ATOM 266 CB SER 25 -14.339 5.416 6.633 1.00 5.82 ATOM 267 OG SER 25 -15.690 5.796 6.400 1.00 5.82 ATOM 269 C SER 25 -13.618 6.160 4.365 1.00 5.22 ATOM 270 O SER 25 -13.013 5.302 3.721 1.00 5.22 ATOM 271 N ASN 26 -14.522 7.000 3.808 1.00 5.22 ATOM 273 CA ASN 26 -14.895 6.988 2.417 1.00 5.22 ATOM 274 CB ASN 26 -16.113 7.888 2.117 1.00 5.82 ATOM 275 CG ASN 26 -17.406 7.264 2.652 1.00 5.82 ATOM 276 OD1 ASN 26 -17.555 6.063 2.878 1.00 5.82 ATOM 277 ND2 ASN 26 -18.406 8.151 2.882 1.00 5.82 ATOM 280 C ASN 26 -13.784 7.414 1.497 1.00 5.22 ATOM 281 O ASN 26 -13.694 6.885 0.388 1.00 5.22 ATOM 282 N HIS 27 -12.918 8.368 1.937 1.00 5.22 ATOM 284 CA HIS 27 -11.825 8.873 1.136 1.00 5.22 ATOM 285 CB HIS 27 -11.058 10.065 1.746 1.00 5.82 ATOM 286 CG HIS 27 -11.854 11.334 1.792 1.00 5.82 ATOM 287 ND1 HIS 27 -12.272 12.015 0.670 1.00 5.82 ATOM 288 CE1 HIS 27 -12.954 13.105 1.105 1.00 5.82 ATOM 289 NE2 HIS 27 -12.999 13.174 2.423 1.00 5.82 ATOM 290 CD2 HIS 27 -12.300 12.060 2.852 1.00 5.82 ATOM 291 C HIS 27 -10.804 7.828 0.811 1.00 5.22 ATOM 292 O HIS 27 -10.375 7.061 1.675 1.00 5.22 ATOM 293 N CYS 28 -10.430 7.782 -0.485 1.00 4.01 ATOM 295 CA CYS 28 -9.459 6.856 -0.992 1.00 4.01 ATOM 296 CB CYS 28 -10.042 5.853 -2.001 1.00 4.58 ATOM 297 SG CYS 28 -11.327 4.792 -1.276 1.00 4.58 ATOM 298 C CYS 28 -8.402 7.651 -1.692 1.00 4.01 ATOM 299 O CYS 28 -8.708 8.522 -2.511 1.00 4.01 ATOM 300 N VAL 29 -7.124 7.385 -1.343 1.00 4.01 ATOM 302 CA VAL 29 -5.997 8.063 -1.931 1.00 4.01 ATOM 303 CB VAL 29 -5.073 8.697 -0.901 1.00 4.58 ATOM 304 CG1 VAL 29 -3.866 9.379 -1.581 1.00 4.58 ATOM 305 CG2 VAL 29 -5.879 9.682 -0.031 1.00 4.58 ATOM 306 C VAL 29 -5.232 7.056 -2.748 1.00 4.01 ATOM 307 O VAL 29 -4.945 5.950 -2.279 1.00 4.01 ATOM 308 N GLU 30 -4.929 7.430 -4.014 1.00 4.01 ATOM 310 CA GLU 30 -4.176 6.601 -4.916 1.00 4.01 ATOM 311 CB GLU 30 -4.693 6.608 -6.369 1.00 4.58 ATOM 312 CG GLU 30 -6.090 6.002 -6.560 1.00 4.58 ATOM 313 CD GLU 30 -6.561 6.058 -8.018 1.00 4.58 ATOM 314 OE1 GLU 30 -5.877 6.646 -8.900 1.00 4.58 ATOM 315 OE2 GLU 30 -7.655 5.487 -8.267 1.00 4.58 ATOM 316 C GLU 30 -2.776 7.143 -4.972 1.00 4.01 ATOM 317 O GLU 30 -2.583 8.338 -5.215 1.00 4.01 ATOM 318 N VAL 31 -1.771 6.270 -4.722 1.00 4.01 ATOM 320 CA VAL 31 -0.374 6.642 -4.761 1.00 4.01 ATOM 321 CB VAL 31 0.309 6.685 -3.390 1.00 4.58 ATOM 322 CG1 VAL 31 1.796 7.075 -3.535 1.00 4.58 ATOM 323 CG2 VAL 31 -0.436 7.620 -2.413 1.00 4.58 ATOM 324 C VAL 31 0.304 5.582 -5.597 1.00 4.01 ATOM 325 O VAL 31 0.167 4.389 -5.322 1.00 4.01 ATOM 326 N ARG 32 1.021 6.009 -6.662 1.00 4.01 ATOM 328 CA ARG 32 1.735 5.116 -7.535 1.00 4.01 ATOM 329 CB ARG 32 1.848 5.596 -8.990 1.00 4.58 ATOM 330 CG ARG 32 0.522 5.689 -9.740 1.00 4.58 ATOM 331 CD ARG 32 0.708 6.166 -11.176 1.00 4.58 ATOM 332 NE ARG 32 -0.645 6.259 -11.796 1.00 4.58 ATOM 334 CZ ARG 32 -0.807 6.647 -13.099 1.00 4.58 ATOM 335 NH1 ARG 32 -2.071 6.723 -13.607 1.00 4.58 ATOM 338 NH2 ARG 32 0.255 6.953 -13.905 1.00 4.58 ATOM 341 C ARG 32 3.131 4.883 -7.044 1.00 4.01 ATOM 342 O ARG 32 3.845 5.819 -6.677 1.00 4.01 ATOM 343 N CYS 33 3.526 3.597 -7.012 1.00 5.22 ATOM 345 CA CYS 33 4.837 3.178 -6.605 1.00 5.22 ATOM 346 CB CYS 33 4.881 2.533 -5.204 1.00 5.82 ATOM 347 SG CYS 33 4.416 3.700 -3.892 1.00 5.82 ATOM 348 C CYS 33 5.339 2.196 -7.625 1.00 5.22 ATOM 349 O CYS 33 4.575 1.669 -8.440 1.00 5.22 ATOM 350 N SER 34 6.669 1.951 -7.605 1.00 5.22 ATOM 352 CA SER 34 7.334 1.043 -8.507 1.00 5.22 ATOM 353 CB SER 34 8.865 1.082 -8.357 1.00 5.82 ATOM 354 OG SER 34 9.361 2.351 -8.760 1.00 5.82 ATOM 356 C SER 34 6.881 -0.373 -8.287 1.00 5.22 ATOM 357 O SER 34 6.756 -1.131 -9.252 1.00 5.22 ATOM 358 N ASP 35 6.616 -0.746 -7.010 1.00 5.22 ATOM 360 CA ASP 35 6.176 -2.069 -6.650 1.00 5.22 ATOM 361 CB ASP 35 6.118 -2.269 -5.113 1.00 5.82 ATOM 362 CG ASP 35 7.500 -2.336 -4.455 1.00 5.82 ATOM 363 OD1 ASP 35 8.539 -2.488 -5.151 1.00 5.82 ATOM 364 OD2 ASP 35 7.523 -2.221 -3.201 1.00 5.82 ATOM 365 C ASP 35 4.781 -2.284 -7.171 1.00 5.22 ATOM 366 O ASP 35 4.539 -3.279 -7.859 1.00 5.22 ATOM 367 N THR 36 3.847 -1.342 -6.867 1.00 5.22 ATOM 369 CA THR 36 2.473 -1.413 -7.314 1.00 5.22 ATOM 370 CB THR 36 1.680 -2.571 -6.696 1.00 5.82 ATOM 371 CG2 THR 36 1.578 -2.426 -5.162 1.00 5.82 ATOM 372 OG1 THR 36 0.383 -2.665 -7.271 1.00 5.82 ATOM 374 C THR 36 1.760 -0.100 -7.052 1.00 5.22 ATOM 375 O THR 36 2.210 0.734 -6.262 1.00 5.22 ATOM 376 N LYS 37 0.636 0.115 -7.774 1.00 5.22 ATOM 378 CA LYS 37 -0.208 1.270 -7.614 1.00 5.22 ATOM 379 CB LYS 37 -1.090 1.530 -8.854 1.00 5.82 ATOM 380 CG LYS 37 -1.966 2.784 -8.806 1.00 5.82 ATOM 381 CD LYS 37 -2.818 2.949 -10.066 1.00 5.82 ATOM 382 CE LYS 37 -3.700 4.197 -10.072 1.00 5.82 ATOM 383 NZ LYS 37 -4.519 4.224 -11.302 1.00 5.82 ATOM 387 C LYS 37 -1.099 0.900 -6.454 1.00 5.22 ATOM 388 O LYS 37 -1.772 -0.139 -6.498 1.00 5.22 ATOM 389 N TYR 38 -1.106 1.733 -5.386 1.00 4.01 ATOM 391 CA TYR 38 -1.929 1.407 -4.259 1.00 4.01 ATOM 392 CB TYR 38 -1.180 1.117 -2.934 1.00 4.58 ATOM 393 CG TYR 38 -0.330 2.187 -2.302 1.00 4.58 ATOM 394 CD1 TYR 38 -0.886 3.053 -1.350 1.00 4.58 ATOM 395 CE1 TYR 38 -0.116 4.032 -0.719 1.00 4.58 ATOM 396 CZ TYR 38 1.238 4.150 -1.024 1.00 4.58 ATOM 397 OH TYR 38 2.022 5.140 -0.388 1.00 4.58 ATOM 399 CE2 TYR 38 1.813 3.284 -1.959 1.00 4.58 ATOM 400 CD2 TYR 38 1.035 2.305 -2.590 1.00 4.58 ATOM 401 C TYR 38 -3.004 2.399 -4.000 1.00 4.01 ATOM 402 O TYR 38 -2.790 3.605 -4.109 1.00 4.01 ATOM 403 N THR 39 -4.205 1.881 -3.678 1.00 4.01 ATOM 405 CA THR 39 -5.324 2.713 -3.357 1.00 4.01 ATOM 406 CB THR 39 -6.517 2.490 -4.258 1.00 4.58 ATOM 407 CG2 THR 39 -7.650 3.462 -3.867 1.00 4.58 ATOM 408 OG1 THR 39 -6.145 2.755 -5.603 1.00 4.58 ATOM 410 C THR 39 -5.641 2.324 -1.941 1.00 4.01 ATOM 411 O THR 39 -5.959 1.162 -1.662 1.00 4.01 ATOM 412 N LEU 40 -5.509 3.300 -1.014 1.00 4.01 ATOM 414 CA LEU 40 -5.792 3.051 0.375 1.00 4.01 ATOM 415 CB LEU 40 -4.628 3.272 1.368 1.00 4.58 ATOM 416 CG LEU 40 -3.383 2.381 1.194 1.00 4.58 ATOM 417 CD1 LEU 40 -2.293 2.811 2.181 1.00 4.58 ATOM 418 CD2 LEU 40 -3.696 0.878 1.297 1.00 4.58 ATOM 419 C LEU 40 -6.904 3.923 0.836 1.00 4.01 ATOM 420 O LEU 40 -6.952 5.111 0.513 1.00 4.01 ATOM 421 N CYS 41 -7.829 3.315 1.604 1.00 4.01 ATOM 423 CA CYS 41 -8.961 4.004 2.152 1.00 4.01 ATOM 424 CB CYS 41 -10.318 3.417 1.708 1.00 4.58 ATOM 425 SG CYS 41 -10.309 1.603 1.543 1.00 4.58 ATOM 426 C CYS 41 -8.841 3.858 3.670 1.00 4.01 ATOM 427 O CYS 41 -8.806 2.700 4.168 1.00 4.01 ATOM 428 OXT CYS 41 -8.761 4.907 4.360 1.00 4.58 TER END