####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS471_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS471_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.17 2.17 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 1 - 37 1.98 2.21 LCS_AVERAGE: 85.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 1 - 20 0.95 2.64 LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 0.95 2.70 LONGEST_CONTINUOUS_SEGMENT: 20 4 - 23 0.98 2.40 LONGEST_CONTINUOUS_SEGMENT: 20 5 - 24 0.90 2.40 LCS_AVERAGE: 34.74 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 20 37 41 3 16 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 37 41 5 14 22 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 37 41 5 13 22 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 20 37 41 5 13 22 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 20 37 41 5 18 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 20 37 41 8 19 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 20 37 41 8 19 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 20 37 41 8 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 20 37 41 10 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 20 37 41 10 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 20 37 41 9 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 20 37 41 3 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 20 37 41 4 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 20 37 41 4 19 24 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 20 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 20 37 41 4 18 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 37 41 3 5 7 13 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 4 37 41 3 5 7 10 10 15 30 31 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 4 37 41 3 4 20 27 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 7 37 41 6 19 25 28 31 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 7 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 7 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 7 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 7 37 41 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 7 37 41 10 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 7 37 41 3 12 21 28 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 7 37 41 3 9 16 19 31 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 6 37 41 3 5 6 9 25 35 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 6 37 41 3 5 6 23 28 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 35 41 3 5 20 26 31 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 13 41 3 5 6 6 27 36 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 13 41 3 5 6 22 28 35 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 7 41 3 5 6 18 31 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 73.41 ( 34.74 85.48 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 20 25 29 32 37 40 40 40 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 48.78 60.98 70.73 78.05 90.24 97.56 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.60 0.81 1.16 1.45 1.78 1.99 1.99 1.99 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 GDT RMS_ALL_AT 2.57 2.44 2.42 2.42 2.29 2.20 2.18 2.18 2.18 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 1.517 0 0.233 0.612 4.054 41.818 37.273 4.054 LGA Q 2 Q 2 2.935 0 0.234 1.188 3.399 30.000 29.293 3.040 LGA E 3 E 3 3.327 0 0.037 1.267 5.696 20.455 12.929 3.195 LGA T 4 T 4 2.848 0 0.064 1.018 4.666 32.727 22.338 4.666 LGA R 5 R 5 1.551 0 0.062 1.596 5.108 59.091 44.298 5.108 LGA K 6 K 6 1.084 0 0.061 1.224 7.496 73.636 40.404 7.228 LGA K 7 K 7 1.232 0 0.063 0.889 3.937 65.455 47.475 2.582 LGA C 8 C 8 0.976 0 0.098 0.695 2.918 77.727 70.000 2.918 LGA T 9 T 9 0.499 0 0.047 0.109 0.683 86.364 92.208 0.283 LGA E 10 E 10 0.446 0 0.043 0.618 2.580 90.909 67.273 2.371 LGA M 11 M 11 0.932 0 0.063 0.834 2.874 81.818 68.182 2.859 LGA K 12 K 12 0.990 0 0.085 0.993 3.765 73.636 66.263 3.765 LGA K 13 K 13 0.993 0 0.038 0.777 4.243 73.636 52.929 4.243 LGA K 14 K 14 1.495 0 0.116 0.967 6.250 65.455 41.414 6.250 LGA F 15 F 15 0.872 0 0.210 0.305 2.055 77.727 69.256 1.790 LGA K 16 K 16 1.156 0 0.140 0.857 3.902 65.455 50.909 3.902 LGA N 17 N 17 0.854 0 0.046 1.378 4.760 70.000 47.955 4.760 LGA C 18 C 18 0.706 0 0.024 0.060 0.855 81.818 81.818 0.855 LGA E 19 E 19 0.516 0 0.133 0.214 0.616 86.364 91.919 0.421 LGA V 20 V 20 1.144 0 0.063 0.073 1.723 61.818 61.299 1.723 LGA R 21 R 21 1.481 0 0.060 1.328 3.807 58.182 43.306 2.756 LGA C 22 C 22 1.753 0 0.053 0.701 2.469 66.364 56.970 2.180 LGA D 23 D 23 1.483 0 0.057 0.647 3.269 61.818 47.500 2.052 LGA E 24 E 24 1.979 0 0.049 0.923 3.052 39.545 43.232 2.721 LGA S 25 S 25 3.344 0 0.597 0.794 6.126 17.727 12.727 6.126 LGA N 26 N 26 6.111 0 0.177 1.174 11.212 1.818 0.909 8.491 LGA H 27 H 27 2.250 0 0.272 0.293 8.239 42.273 18.909 7.470 LGA C 28 C 28 2.111 0 0.216 0.247 4.713 62.727 43.939 4.713 LGA V 29 V 29 1.305 0 0.067 0.080 1.981 58.182 57.143 1.541 LGA E 30 E 30 0.894 0 0.073 0.573 2.761 77.727 59.394 2.469 LGA V 31 V 31 0.870 0 0.036 0.093 0.893 81.818 81.818 0.843 LGA R 32 R 32 0.651 0 0.210 0.738 1.861 70.000 70.413 1.861 LGA C 33 C 33 1.411 0 0.487 0.539 2.933 55.909 54.242 1.753 LGA S 34 S 34 1.910 0 0.223 0.795 3.540 38.636 43.030 1.470 LGA D 35 D 35 2.917 0 0.082 0.978 4.376 35.909 24.773 4.376 LGA T 36 T 36 3.466 0 0.413 0.437 8.021 24.545 14.026 6.703 LGA K 37 K 37 3.139 0 0.146 1.180 12.832 28.182 12.525 12.832 LGA Y 38 Y 38 2.534 0 0.062 1.315 11.868 21.818 7.727 11.868 LGA T 39 T 39 3.619 0 0.154 0.142 7.075 17.727 10.130 7.075 LGA L 40 L 40 3.512 0 0.163 1.018 9.280 13.182 6.591 8.459 LGA C 41 C 41 2.862 0 0.268 0.912 6.426 27.727 15.844 6.426 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.172 2.155 3.456 54.091 44.404 25.676 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 1.99 79.268 84.936 1.914 LGA_LOCAL RMSD: 1.990 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.185 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.172 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.607586 * X + 0.766156 * Y + -0.209388 * Z + -5.169819 Y_new = 0.450737 * X + 0.115541 * Y + -0.885148 * Z + -4.412399 Z_new = -0.653969 * X + -0.632182 * Y + -0.415536 * Z + 1.603585 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.503329 0.712819 -2.152289 [DEG: 143.4302 40.8415 -123.3171 ] ZXZ: -0.232287 1.999328 -2.339257 [DEG: -13.3090 114.5531 -134.0295 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS471_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS471_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 1.99 84.936 2.17 REMARK ---------------------------------------------------------- MOLECULE T0955TS471_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT 5KVN_A 5JG9_A ATOM 1 N SER 1 -0.945 -14.209 -0.510 1.00 0.31 N ATOM 2 CA SER 1 -0.801 -14.845 0.814 1.00 0.31 C ATOM 3 CB SER 1 0.470 -15.707 0.855 1.00 0.31 C ATOM 4 OG SER 1 1.619 -14.885 0.728 1.00 0.31 O ATOM 5 C SER 1 -0.716 -13.821 1.898 1.00 0.31 C ATOM 6 O SER 1 -1.068 -12.659 1.711 1.00 0.31 O ATOM 7 N GLN 2 -0.255 -14.259 3.081 1.00 0.34 N ATOM 8 CA GLN 2 -0.114 -13.430 4.240 1.00 0.34 C ATOM 9 CB GLN 2 0.323 -14.254 5.463 1.00 0.34 C ATOM 10 CG GLN 2 0.444 -13.452 6.760 1.00 0.34 C ATOM 11 CD GLN 2 -0.946 -13.340 7.364 1.00 0.34 C ATOM 12 OE1 GLN 2 -1.110 -12.883 8.494 1.00 0.34 O ATOM 13 NE2 GLN 2 -1.978 -13.777 6.593 1.00 0.34 N ATOM 14 C GLN 2 0.958 -12.422 3.978 1.00 0.34 C ATOM 15 O GLN 2 0.858 -11.266 4.386 1.00 0.34 O ATOM 16 N GLU 3 2.019 -12.847 3.270 1.00 0.32 N ATOM 17 CA GLU 3 3.154 -12.001 3.053 1.00 0.32 C ATOM 18 CB GLU 3 4.327 -12.730 2.369 1.00 0.32 C ATOM 19 CG GLU 3 4.014 -13.293 0.984 1.00 0.32 C ATOM 20 CD GLU 3 4.275 -12.191 -0.028 1.00 0.32 C ATOM 21 OE1 GLU 3 5.134 -11.316 0.258 1.00 0.32 O ATOM 22 OE2 GLU 3 3.621 -12.212 -1.104 1.00 0.32 O ATOM 23 C GLU 3 2.752 -10.798 2.257 1.00 0.32 C ATOM 24 O GLU 3 3.292 -9.714 2.465 1.00 0.32 O ATOM 25 N THR 4 1.799 -10.951 1.317 1.00 0.27 N ATOM 26 CA THR 4 1.360 -9.842 0.512 1.00 0.27 C ATOM 27 CB THR 4 0.377 -10.226 -0.560 1.00 0.27 C ATOM 28 OG1 THR 4 -0.815 -10.733 0.017 1.00 0.27 O ATOM 29 CG2 THR 4 1.029 -11.285 -1.465 1.00 0.27 C ATOM 30 C THR 4 0.701 -8.836 1.403 1.00 0.27 C ATOM 31 O THR 4 0.789 -7.632 1.164 1.00 0.27 O ATOM 32 N ARG 5 -0.003 -9.314 2.445 1.00 0.29 N ATOM 33 CA ARG 5 -0.651 -8.429 3.370 1.00 0.29 C ATOM 34 CB ARG 5 -1.400 -9.185 4.480 1.00 0.29 C ATOM 35 CG ARG 5 -2.622 -9.964 3.985 1.00 0.29 C ATOM 36 CD ARG 5 -3.954 -9.406 4.490 1.00 0.29 C ATOM 37 NE ARG 5 -4.205 -8.111 3.800 1.00 0.29 N ATOM 38 CZ ARG 5 -4.855 -8.105 2.603 1.00 0.29 C ATOM 39 NH1 ARG 5 -5.276 -9.280 2.050 1.00 0.29 N ATOM 40 NH2 ARG 5 -5.083 -6.923 1.960 1.00 0.29 N ATOM 41 C ARG 5 0.428 -7.629 4.017 1.00 0.29 C ATOM 42 O ARG 5 0.279 -6.431 4.257 1.00 0.29 O ATOM 43 N LYS 6 1.563 -8.283 4.308 1.00 0.22 N ATOM 44 CA LYS 6 2.649 -7.584 4.919 1.00 0.22 C ATOM 45 CB LYS 6 3.852 -8.471 5.266 1.00 0.22 C ATOM 46 CG LYS 6 3.598 -9.379 6.465 1.00 0.22 C ATOM 47 CD LYS 6 4.724 -10.384 6.689 1.00 0.22 C ATOM 48 CE LYS 6 4.523 -11.288 7.907 1.00 0.22 C ATOM 49 NZ LYS 6 5.718 -12.141 8.098 1.00 0.22 N ATOM 50 C LYS 6 3.123 -6.530 3.973 1.00 0.22 C ATOM 51 O LYS 6 3.508 -5.444 4.398 1.00 0.22 O ATOM 52 N LYS 7 3.109 -6.821 2.659 1.00 0.24 N ATOM 53 CA LYS 7 3.589 -5.861 1.708 1.00 0.24 C ATOM 54 CB LYS 7 3.484 -6.346 0.251 1.00 0.24 C ATOM 55 CG LYS 7 4.461 -7.473 -0.092 1.00 0.24 C ATOM 56 CD LYS 7 4.097 -8.240 -1.367 1.00 0.24 C ATOM 57 CE LYS 7 4.706 -7.677 -2.650 1.00 0.24 C ATOM 58 NZ LYS 7 4.285 -8.508 -3.801 1.00 0.24 N ATOM 59 C LYS 7 2.773 -4.614 1.818 1.00 0.24 C ATOM 60 O LYS 7 3.322 -3.513 1.795 1.00 0.24 O ATOM 61 N CYS 8 1.436 -4.721 1.942 1.00 0.19 N ATOM 62 CA CYS 8 0.763 -3.461 2.021 1.00 0.19 C ATOM 63 CB CYS 8 -0.745 -3.388 1.631 1.00 0.19 C ATOM 64 SG CYS 8 -1.985 -4.449 2.430 1.00 0.19 S ATOM 65 C CYS 8 1.101 -2.760 3.303 1.00 0.19 C ATOM 66 O CYS 8 1.113 -1.530 3.349 1.00 0.19 O ATOM 67 N THR 9 1.402 -3.507 4.382 1.00 0.15 N ATOM 68 CA THR 9 1.794 -2.870 5.609 1.00 0.15 C ATOM 69 CB THR 9 2.092 -3.849 6.706 1.00 0.15 C ATOM 70 OG1 THR 9 0.940 -4.623 6.999 1.00 0.15 O ATOM 71 CG2 THR 9 2.549 -3.077 7.954 1.00 0.15 C ATOM 72 C THR 9 3.062 -2.117 5.338 1.00 0.15 C ATOM 73 O THR 9 3.243 -0.990 5.800 1.00 0.15 O ATOM 74 N GLU 10 3.976 -2.732 4.567 1.00 0.19 N ATOM 75 CA GLU 10 5.243 -2.126 4.273 1.00 0.19 C ATOM 76 CB GLU 10 6.137 -3.013 3.391 1.00 0.19 C ATOM 77 CG GLU 10 6.612 -4.285 4.091 1.00 0.19 C ATOM 78 CD GLU 10 7.476 -5.060 3.108 1.00 0.19 C ATOM 79 OE1 GLU 10 8.050 -4.423 2.186 1.00 0.19 O ATOM 80 OE2 GLU 10 7.569 -6.305 3.267 1.00 0.19 O ATOM 81 C GLU 10 5.006 -0.861 3.515 1.00 0.19 C ATOM 82 O GLU 10 5.646 0.155 3.780 1.00 0.19 O ATOM 83 N MET 11 4.066 -0.889 2.551 1.00 0.17 N ATOM 84 CA MET 11 3.803 0.285 1.768 1.00 0.17 C ATOM 85 CB MET 11 2.802 0.067 0.621 1.00 0.17 C ATOM 86 CG MET 11 3.472 -0.318 -0.698 1.00 0.17 C ATOM 87 SD MET 11 4.384 -1.881 -0.714 1.00 0.17 S ATOM 88 CE MET 11 5.208 -1.482 -2.282 1.00 0.17 C ATOM 89 C MET 11 3.296 1.390 2.631 1.00 0.17 C ATOM 90 O MET 11 3.658 2.547 2.427 1.00 0.17 O ATOM 91 N LYS 12 2.446 1.073 3.621 1.00 0.14 N ATOM 92 CA LYS 12 1.923 2.125 4.440 1.00 0.14 C ATOM 93 CB LYS 12 1.016 1.634 5.582 1.00 0.14 C ATOM 94 CG LYS 12 -0.271 0.942 5.133 1.00 0.14 C ATOM 95 CD LYS 12 -0.998 0.256 6.290 1.00 0.14 C ATOM 96 CE LYS 12 -2.260 -0.505 5.877 1.00 0.14 C ATOM 97 NZ LYS 12 -1.905 -1.866 5.420 1.00 0.14 N ATOM 98 C LYS 12 3.089 2.790 5.097 1.00 0.14 C ATOM 99 O LYS 12 3.160 4.016 5.167 1.00 0.14 O ATOM 100 N LYS 13 4.042 1.979 5.594 1.00 0.16 N ATOM 101 CA LYS 13 5.204 2.503 6.251 1.00 0.16 C ATOM 102 CB LYS 13 6.074 1.415 6.902 1.00 0.16 C ATOM 103 CG LYS 13 5.588 1.007 8.294 1.00 0.16 C ATOM 104 CD LYS 13 4.207 0.353 8.321 1.00 0.16 C ATOM 105 CE LYS 13 3.737 0.011 9.739 1.00 0.16 C ATOM 106 NZ LYS 13 2.322 -0.426 9.722 1.00 0.16 N ATOM 107 C LYS 13 6.048 3.262 5.277 1.00 0.16 C ATOM 108 O LYS 13 6.552 4.336 5.599 1.00 0.16 O ATOM 109 N LYS 14 6.217 2.737 4.047 1.00 0.18 N ATOM 110 CA LYS 14 7.054 3.427 3.109 1.00 0.18 C ATOM 111 CB LYS 14 7.106 2.724 1.740 1.00 0.18 C ATOM 112 CG LYS 14 7.990 3.430 0.711 1.00 0.18 C ATOM 113 CD LYS 14 8.298 2.564 -0.513 1.00 0.18 C ATOM 114 CE LYS 14 9.159 3.252 -1.573 1.00 0.18 C ATOM 115 NZ LYS 14 9.285 2.371 -2.756 1.00 0.18 N ATOM 116 C LYS 14 6.479 4.788 2.885 1.00 0.18 C ATOM 117 O LYS 14 7.173 5.794 3.017 1.00 0.18 O ATOM 118 N PHE 15 5.173 4.844 2.562 1.00 0.20 N ATOM 119 CA PHE 15 4.522 6.098 2.326 1.00 0.20 C ATOM 120 CB PHE 15 3.630 6.055 1.072 1.00 0.20 C ATOM 121 CG PHE 15 4.456 5.608 -0.091 1.00 0.20 C ATOM 122 CD1 PHE 15 4.591 4.267 -0.372 1.00 0.20 C ATOM 123 CD2 PHE 15 5.089 6.517 -0.909 1.00 0.20 C ATOM 124 CE1 PHE 15 5.343 3.838 -1.442 1.00 0.20 C ATOM 125 CE2 PHE 15 5.842 6.096 -1.980 1.00 0.20 C ATOM 126 CZ PHE 15 5.974 4.755 -2.248 1.00 0.20 C ATOM 127 C PHE 15 3.604 6.288 3.497 1.00 0.20 C ATOM 128 O PHE 15 2.438 5.899 3.447 1.00 0.20 O ATOM 129 N LYS 16 4.113 6.918 4.574 1.00 0.26 N ATOM 130 CA LYS 16 3.363 7.058 5.792 1.00 0.26 C ATOM 131 CB LYS 16 4.169 7.722 6.924 1.00 0.26 C ATOM 132 CG LYS 16 4.562 9.170 6.625 1.00 0.26 C ATOM 133 CD LYS 16 4.930 9.981 7.872 1.00 0.26 C ATOM 134 CE LYS 16 5.196 11.463 7.592 1.00 0.26 C ATOM 135 NZ LYS 16 5.110 12.244 8.846 1.00 0.26 N ATOM 136 C LYS 16 2.145 7.896 5.589 1.00 0.26 C ATOM 137 O LYS 16 1.058 7.551 6.051 1.00 0.26 O ATOM 138 N ASN 17 2.310 9.049 4.921 1.00 0.25 N ATOM 139 CA ASN 17 1.226 9.966 4.735 1.00 0.25 C ATOM 140 CB ASN 17 1.687 11.383 4.340 1.00 0.25 C ATOM 141 CG ASN 17 2.339 11.368 2.963 1.00 0.25 C ATOM 142 OD1 ASN 17 3.118 10.475 2.635 1.00 0.25 O ATOM 143 ND2 ASN 17 2.014 12.395 2.134 1.00 0.25 N ATOM 144 C ASN 17 0.253 9.479 3.703 1.00 0.25 C ATOM 145 O ASN 17 -0.946 9.730 3.815 1.00 0.25 O ATOM 146 N CYS 18 0.747 8.759 2.678 1.00 0.19 N ATOM 147 CA CYS 18 -0.051 8.412 1.533 1.00 0.19 C ATOM 148 CB CYS 18 0.775 7.812 0.385 1.00 0.19 C ATOM 149 SG CYS 18 2.025 8.970 -0.252 1.00 0.19 S ATOM 150 C CYS 18 -1.139 7.446 1.867 1.00 0.19 C ATOM 151 O CYS 18 -1.071 6.705 2.844 1.00 0.19 O ATOM 152 N GLU 19 -2.199 7.464 1.029 1.00 0.18 N ATOM 153 CA GLU 19 -3.327 6.599 1.193 1.00 0.18 C ATOM 154 CB GLU 19 -4.622 7.182 0.593 1.00 0.18 C ATOM 155 CG GLU 19 -5.845 6.282 0.773 1.00 0.18 C ATOM 156 CD GLU 19 -7.022 6.902 0.027 1.00 0.18 C ATOM 157 OE1 GLU 19 -7.101 8.156 -0.042 1.00 0.18 O ATOM 158 OE2 GLU 19 -7.856 6.114 -0.495 1.00 0.18 O ATOM 159 C GLU 19 -3.032 5.341 0.439 1.00 0.18 C ATOM 160 O GLU 19 -3.050 5.316 -0.791 1.00 0.18 O ATOM 161 N VAL 20 -2.764 4.247 1.174 1.00 0.18 N ATOM 162 CA VAL 20 -2.450 3.001 0.542 1.00 0.18 C ATOM 163 CB VAL 20 -1.382 2.237 1.276 1.00 0.18 C ATOM 164 CG1 VAL 20 -1.173 0.874 0.594 1.00 0.18 C ATOM 165 CG2 VAL 20 -0.116 3.111 1.330 1.00 0.18 C ATOM 166 C VAL 20 -3.691 2.173 0.570 1.00 0.18 C ATOM 167 O VAL 20 -4.232 1.875 1.633 1.00 0.18 O ATOM 168 N ARG 21 -4.180 1.777 -0.617 1.00 0.18 N ATOM 169 CA ARG 21 -5.384 1.005 -0.647 1.00 0.18 C ATOM 170 CB ARG 21 -6.398 1.551 -1.670 1.00 0.18 C ATOM 171 CG ARG 21 -7.821 1.013 -1.509 1.00 0.18 C ATOM 172 CD ARG 21 -8.825 1.647 -2.481 1.00 0.18 C ATOM 173 NE ARG 21 -9.066 0.690 -3.598 1.00 0.18 N ATOM 174 CZ ARG 21 -9.968 0.996 -4.577 1.00 0.18 C ATOM 175 NH1 ARG 21 -10.567 2.221 -4.584 1.00 0.18 N ATOM 176 NH2 ARG 21 -10.269 0.082 -5.545 1.00 0.18 N ATOM 177 C ARG 21 -5.005 -0.375 -1.067 1.00 0.18 C ATOM 178 O ARG 21 -4.510 -0.578 -2.175 1.00 0.18 O ATOM 179 N CYS 22 -5.212 -1.373 -0.183 1.00 0.26 N ATOM 180 CA CYS 22 -4.889 -2.700 -0.618 1.00 0.26 C ATOM 181 CB CYS 22 -3.682 -3.381 0.099 1.00 0.26 C ATOM 182 SG CYS 22 -3.766 -3.572 1.911 1.00 0.26 S ATOM 183 C CYS 22 -6.109 -3.558 -0.544 1.00 0.26 C ATOM 184 O CYS 22 -6.878 -3.514 0.416 1.00 0.26 O ATOM 185 N ASP 23 -6.339 -4.331 -1.622 1.00 0.34 N ATOM 186 CA ASP 23 -7.444 -5.238 -1.696 1.00 0.34 C ATOM 187 CB ASP 23 -7.861 -5.603 -3.133 1.00 0.34 C ATOM 188 CG ASP 23 -8.616 -4.440 -3.749 1.00 0.34 C ATOM 189 OD1 ASP 23 -8.939 -3.481 -2.999 1.00 0.34 O ATOM 190 OD2 ASP 23 -8.894 -4.503 -4.976 1.00 0.34 O ATOM 191 C ASP 23 -6.996 -6.508 -1.063 1.00 0.34 C ATOM 192 O ASP 23 -5.881 -6.607 -0.557 1.00 0.34 O ATOM 193 N GLU 24 -7.880 -7.518 -1.063 1.00 0.39 N ATOM 194 CA GLU 24 -7.556 -8.804 -0.522 1.00 0.39 C ATOM 195 CB GLU 24 -8.747 -9.779 -0.512 1.00 0.39 C ATOM 196 CG GLU 24 -9.803 -9.429 0.534 1.00 0.39 C ATOM 197 CD GLU 24 -9.244 -9.805 1.897 1.00 0.39 C ATOM 198 OE1 GLU 24 -8.085 -10.298 1.952 1.00 0.39 O ATOM 199 OE2 GLU 24 -9.972 -9.604 2.904 1.00 0.39 O ATOM 200 C GLU 24 -6.500 -9.416 -1.380 1.00 0.39 C ATOM 201 O GLU 24 -5.665 -10.187 -0.907 1.00 0.39 O ATOM 202 N SER 25 -6.524 -9.091 -2.682 1.00 0.39 N ATOM 203 CA SER 25 -5.606 -9.688 -3.603 1.00 0.39 C ATOM 204 CB SER 25 -5.883 -9.317 -5.069 1.00 0.39 C ATOM 205 OG SER 25 -4.930 -9.938 -5.916 1.00 0.39 O ATOM 206 C SER 25 -4.215 -9.264 -3.267 1.00 0.39 C ATOM 207 O SER 25 -3.988 -8.252 -2.601 1.00 0.39 O ATOM 208 N ASN 26 -3.243 -10.083 -3.708 1.00 0.38 N ATOM 209 CA ASN 26 -1.857 -9.878 -3.403 1.00 0.38 C ATOM 210 CB ASN 26 -0.980 -11.000 -3.973 1.00 0.38 C ATOM 211 CG ASN 26 -1.433 -12.316 -3.359 1.00 0.38 C ATOM 212 OD1 ASN 26 -1.981 -12.351 -2.257 1.00 0.38 O ATOM 213 ND2 ASN 26 -1.202 -13.436 -4.091 1.00 0.38 N ATOM 214 C ASN 26 -1.351 -8.612 -4.021 1.00 0.38 C ATOM 215 O ASN 26 -0.771 -7.762 -3.347 1.00 0.38 O ATOM 216 N HIS 27 -1.553 -8.487 -5.342 1.00 0.38 N ATOM 217 CA HIS 27 -1.079 -7.407 -6.159 1.00 0.38 C ATOM 218 ND1 HIS 27 1.469 -7.958 -8.155 1.00 0.38 N ATOM 219 CG HIS 27 0.238 -8.544 -7.969 1.00 0.38 C ATOM 220 CB HIS 27 -0.997 -7.765 -7.651 1.00 0.38 C ATOM 221 NE2 HIS 27 1.764 -10.144 -8.413 1.00 0.38 N ATOM 222 CD2 HIS 27 0.435 -9.881 -8.129 1.00 0.38 C ATOM 223 CE1 HIS 27 2.344 -8.956 -8.418 1.00 0.38 C ATOM 224 C HIS 27 -1.859 -6.139 -6.046 1.00 0.38 C ATOM 225 O HIS 27 -1.331 -5.078 -6.370 1.00 0.38 O ATOM 226 N CYS 28 -3.141 -6.192 -5.646 1.00 0.25 N ATOM 227 CA CYS 28 -3.932 -4.998 -5.753 1.00 0.25 C ATOM 228 CB CYS 28 -5.437 -5.261 -5.599 1.00 0.25 C ATOM 229 SG CYS 28 -6.080 -6.312 -6.930 1.00 0.25 S ATOM 230 C CYS 28 -3.565 -3.973 -4.728 1.00 0.25 C ATOM 231 O CYS 28 -4.232 -3.849 -3.704 1.00 0.25 O ATOM 232 N VAL 29 -2.514 -3.171 -4.993 1.00 0.22 N ATOM 233 CA VAL 29 -2.184 -2.120 -4.070 1.00 0.22 C ATOM 234 CB VAL 29 -0.873 -2.327 -3.365 1.00 0.22 C ATOM 235 CG1 VAL 29 -0.566 -1.085 -2.511 1.00 0.22 C ATOM 236 CG2 VAL 29 -0.955 -3.634 -2.559 1.00 0.22 C ATOM 237 C VAL 29 -2.085 -0.838 -4.840 1.00 0.22 C ATOM 238 O VAL 29 -1.348 -0.744 -5.822 1.00 0.22 O ATOM 239 N GLU 30 -2.839 0.190 -4.400 1.00 0.18 N ATOM 240 CA GLU 30 -2.803 1.465 -5.054 1.00 0.18 C ATOM 241 CB GLU 30 -4.167 1.941 -5.583 1.00 0.18 C ATOM 242 CG GLU 30 -4.686 1.138 -6.772 1.00 0.18 C ATOM 243 CD GLU 30 -6.001 1.755 -7.212 1.00 0.18 C ATOM 244 OE1 GLU 30 -6.809 2.131 -6.322 1.00 0.18 O ATOM 245 OE2 GLU 30 -6.213 1.862 -8.449 1.00 0.18 O ATOM 246 C GLU 30 -2.400 2.470 -4.032 1.00 0.18 C ATOM 247 O GLU 30 -3.013 2.565 -2.970 1.00 0.18 O ATOM 248 N VAL 31 -1.356 3.263 -4.332 1.00 0.18 N ATOM 249 CA VAL 31 -0.951 4.241 -3.371 1.00 0.18 C ATOM 250 CB VAL 31 0.518 4.206 -3.078 1.00 0.18 C ATOM 251 CG1 VAL 31 0.842 5.323 -2.071 1.00 0.18 C ATOM 252 CG2 VAL 31 0.883 2.792 -2.592 1.00 0.18 C ATOM 253 C VAL 31 -1.258 5.590 -3.937 1.00 0.18 C ATOM 254 O VAL 31 -0.859 5.911 -5.056 1.00 0.18 O ATOM 255 N ARG 32 -1.983 6.426 -3.167 1.00 0.21 N ATOM 256 CA ARG 32 -2.298 7.744 -3.641 1.00 0.21 C ATOM 257 CB ARG 32 -3.765 8.165 -3.451 1.00 0.21 C ATOM 258 CG ARG 32 -4.718 7.521 -4.451 1.00 0.21 C ATOM 259 CD ARG 32 -6.176 7.953 -4.288 1.00 0.21 C ATOM 260 NE ARG 32 -6.942 7.259 -5.363 1.00 0.21 N ATOM 261 CZ ARG 32 -8.193 6.777 -5.119 1.00 0.21 C ATOM 262 NH1 ARG 32 -8.766 6.953 -3.895 1.00 0.21 N ATOM 263 NH2 ARG 32 -8.867 6.111 -6.101 1.00 0.21 N ATOM 264 C ARG 32 -1.476 8.709 -2.863 1.00 0.21 C ATOM 265 O ARG 32 -1.426 8.657 -1.634 1.00 0.21 O ATOM 266 N CYS 33 -0.806 9.631 -3.576 1.00 0.19 N ATOM 267 CA CYS 33 0.034 10.581 -2.915 1.00 0.19 C ATOM 268 CB CYS 33 1.425 10.721 -3.566 1.00 0.19 C ATOM 269 SG CYS 33 2.427 9.207 -3.441 1.00 0.19 S ATOM 270 C CYS 33 -0.631 11.921 -2.976 1.00 0.19 C ATOM 271 O CYS 33 -1.557 12.140 -3.755 1.00 0.19 O ATOM 272 N SER 34 -0.174 12.843 -2.107 1.00 0.32 N ATOM 273 CA SER 34 -0.665 14.190 -2.036 1.00 0.32 C ATOM 274 CB SER 34 -0.079 14.963 -0.845 1.00 0.32 C ATOM 275 OG SER 34 -0.597 16.285 -0.821 1.00 0.32 O ATOM 276 C SER 34 -0.241 14.892 -3.285 1.00 0.32 C ATOM 277 O SER 34 -0.824 15.895 -3.691 1.00 0.32 O ATOM 278 N ASP 35 0.824 14.359 -3.902 1.00 0.45 N ATOM 279 CA ASP 35 1.429 14.813 -5.120 1.00 0.45 C ATOM 280 CB ASP 35 2.735 14.062 -5.431 1.00 0.45 C ATOM 281 CG ASP 35 3.739 14.407 -4.339 1.00 0.45 C ATOM 282 OD1 ASP 35 3.623 15.518 -3.756 1.00 0.45 O ATOM 283 OD2 ASP 35 4.629 13.557 -4.067 1.00 0.45 O ATOM 284 C ASP 35 0.462 14.524 -6.224 1.00 0.45 C ATOM 285 O ASP 35 0.589 15.058 -7.325 1.00 0.45 O ATOM 286 N THR 36 -0.538 13.663 -5.948 1.00 0.46 N ATOM 287 CA THR 36 -1.477 13.238 -6.947 1.00 0.46 C ATOM 288 CB THR 36 -2.038 14.383 -7.753 1.00 0.46 C ATOM 289 OG1 THR 36 -2.597 15.352 -6.880 1.00 0.46 O ATOM 290 CG2 THR 36 -3.151 13.860 -8.681 1.00 0.46 C ATOM 291 C THR 36 -0.752 12.290 -7.854 1.00 0.46 C ATOM 292 O THR 36 -1.000 12.219 -9.059 1.00 0.46 O ATOM 293 N LYS 37 0.198 11.527 -7.275 1.00 0.45 N ATOM 294 CA LYS 37 0.894 10.530 -8.034 1.00 0.45 C ATOM 295 CB LYS 37 2.430 10.617 -7.940 1.00 0.45 C ATOM 296 CG LYS 37 2.987 11.877 -8.608 1.00 0.45 C ATOM 297 CD LYS 37 4.509 12.029 -8.517 1.00 0.45 C ATOM 298 CE LYS 37 5.032 12.380 -7.124 1.00 0.45 C ATOM 299 NZ LYS 37 6.469 12.728 -7.199 1.00 0.45 N ATOM 300 C LYS 37 0.458 9.194 -7.531 1.00 0.45 C ATOM 301 O LYS 37 0.066 9.046 -6.372 1.00 0.45 O ATOM 302 N TYR 38 0.497 8.173 -8.410 1.00 0.35 N ATOM 303 CA TYR 38 0.039 6.880 -8.005 1.00 0.35 C ATOM 304 CB TYR 38 -1.156 6.373 -8.827 1.00 0.35 C ATOM 305 CG TYR 38 -2.287 7.306 -8.581 1.00 0.35 C ATOM 306 CD1 TYR 38 -2.410 8.467 -9.309 1.00 0.35 C ATOM 307 CD2 TYR 38 -3.225 7.016 -7.622 1.00 0.35 C ATOM 308 CE1 TYR 38 -3.458 9.329 -9.080 1.00 0.35 C ATOM 309 CE2 TYR 38 -4.272 7.871 -7.388 1.00 0.35 C ATOM 310 CZ TYR 38 -4.392 9.027 -8.117 1.00 0.35 C ATOM 311 OH TYR 38 -5.470 9.902 -7.868 1.00 0.35 O ATOM 312 C TYR 38 1.132 5.889 -8.209 1.00 0.35 C ATOM 313 O TYR 38 1.829 5.899 -9.224 1.00 0.35 O ATOM 314 N THR 39 1.316 5.004 -7.212 1.00 0.34 N ATOM 315 CA THR 39 2.280 3.958 -7.330 1.00 0.34 C ATOM 316 CB THR 39 3.274 3.941 -6.210 1.00 0.34 C ATOM 317 OG1 THR 39 3.966 5.181 -6.162 1.00 0.34 O ATOM 318 CG2 THR 39 4.266 2.788 -6.446 1.00 0.34 C ATOM 319 C THR 39 1.494 2.698 -7.231 1.00 0.34 C ATOM 320 O THR 39 0.666 2.553 -6.334 1.00 0.34 O ATOM 321 N LEU 40 1.713 1.759 -8.167 1.00 0.40 N ATOM 322 CA LEU 40 0.968 0.544 -8.081 1.00 0.40 C ATOM 323 CB LEU 40 0.179 0.212 -9.358 1.00 0.40 C ATOM 324 CG LEU 40 -0.911 1.259 -9.657 1.00 0.40 C ATOM 325 CD1 LEU 40 -1.712 0.913 -10.921 1.00 0.40 C ATOM 326 CD2 LEU 40 -1.802 1.493 -8.428 1.00 0.40 C ATOM 327 C LEU 40 1.939 -0.548 -7.799 1.00 0.40 C ATOM 328 O LEU 40 3.046 -0.565 -8.326 1.00 0.40 O ATOM 329 N CYS 41 1.543 -1.479 -6.910 1.00 0.41 N ATOM 330 CA CYS 41 2.394 -2.573 -6.558 1.00 0.41 C ATOM 331 CB CYS 41 3.342 -2.229 -5.400 1.00 0.41 C ATOM 332 SG CYS 41 4.431 -3.611 -4.948 1.00 0.41 S ATOM 333 C CYS 41 1.479 -3.688 -6.072 1.00 0.41 C ATOM 334 O CYS 41 1.886 -4.878 -6.166 1.00 0.41 O ATOM 335 OXT CYS 41 0.364 -3.359 -5.590 1.00 0.41 O TER END