####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS458_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS458_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 6 - 31 4.97 8.63 LONGEST_CONTINUOUS_SEGMENT: 26 10 - 35 4.99 9.05 LCS_AVERAGE: 60.80 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.39 14.32 LCS_AVERAGE: 29.39 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 1 - 15 1.00 14.66 LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.71 14.51 LCS_AVERAGE: 23.14 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 15 17 22 3 3 5 14 17 17 17 17 18 19 21 22 23 26 27 28 29 31 32 34 LCS_GDT Q 2 Q 2 15 17 22 3 12 15 15 17 17 17 17 18 19 21 22 25 26 28 29 30 33 35 37 LCS_GDT E 3 E 3 15 17 22 10 13 15 15 17 17 17 17 18 19 21 22 25 26 29 30 33 35 37 39 LCS_GDT T 4 T 4 15 17 22 10 13 15 15 17 17 17 17 18 19 21 21 24 26 27 27 29 33 35 39 LCS_GDT R 5 R 5 15 17 22 10 13 15 15 17 17 17 17 18 19 21 22 23 26 27 28 29 33 35 39 LCS_GDT K 6 K 6 15 17 26 10 13 15 15 17 17 17 17 18 19 21 24 25 28 30 32 34 35 37 39 LCS_GDT K 7 K 7 15 17 26 10 13 15 15 17 17 17 17 18 20 23 24 25 29 31 32 34 35 37 39 LCS_GDT C 8 C 8 15 17 26 10 13 15 15 17 17 17 17 18 19 23 24 25 28 30 32 34 35 37 39 LCS_GDT T 9 T 9 15 17 26 10 13 15 15 17 17 17 17 18 20 23 24 25 29 31 32 34 35 37 39 LCS_GDT E 10 E 10 15 17 26 10 13 15 15 17 17 17 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT M 11 M 11 15 17 26 10 13 15 15 17 17 17 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT K 12 K 12 15 17 26 10 13 15 15 17 17 17 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT K 13 K 13 15 17 26 6 13 15 15 17 17 17 17 18 20 24 26 28 29 31 32 34 35 37 39 LCS_GDT K 14 K 14 15 17 26 10 13 15 15 17 17 17 17 18 19 22 26 28 29 31 32 34 35 37 39 LCS_GDT F 15 F 15 15 17 26 9 13 15 15 17 17 17 17 18 20 24 26 28 29 31 32 34 35 37 39 LCS_GDT K 16 K 16 15 17 26 3 11 15 15 17 17 17 17 18 20 24 26 28 29 31 32 34 35 37 39 LCS_GDT N 17 N 17 6 17 26 3 4 6 11 17 17 17 17 18 19 22 23 25 27 29 32 34 35 37 39 LCS_GDT C 18 C 18 6 10 26 3 5 7 9 9 11 13 15 18 19 22 23 25 26 29 30 32 34 37 39 LCS_GDT E 19 E 19 6 10 26 3 5 7 9 9 11 13 15 17 19 22 23 25 27 31 32 34 35 37 39 LCS_GDT V 20 V 20 6 10 26 3 5 7 9 9 11 13 15 15 19 22 23 25 26 29 31 33 35 37 39 LCS_GDT R 21 R 21 6 10 26 3 5 7 9 9 11 13 15 17 19 22 25 28 29 31 32 34 35 37 39 LCS_GDT C 22 C 22 6 10 26 3 5 7 9 9 11 13 15 17 19 22 26 28 29 31 32 34 35 37 39 LCS_GDT D 23 D 23 6 10 26 3 5 7 9 9 11 13 15 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT E 24 E 24 6 10 26 3 4 7 9 9 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT S 25 S 25 3 9 26 3 4 7 8 9 10 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT N 26 N 26 3 9 26 3 3 7 8 9 9 9 12 14 17 21 26 28 28 31 32 34 35 37 39 LCS_GDT H 27 H 27 6 9 26 4 5 6 7 9 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT C 28 C 28 7 9 26 4 5 7 8 9 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT V 29 V 29 7 9 26 4 6 7 7 9 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT E 30 E 30 7 9 26 5 6 7 7 9 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT V 31 V 31 7 9 26 5 6 7 7 9 10 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT R 32 R 32 7 9 26 5 6 7 7 9 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT C 33 C 33 7 9 26 5 6 7 7 9 10 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT S 34 S 34 7 9 26 5 6 7 7 8 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT D 35 D 35 4 7 26 4 4 5 7 8 11 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT T 36 T 36 6 7 22 5 5 6 6 6 10 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT K 37 K 37 6 7 22 5 5 6 6 6 10 12 17 19 21 24 25 28 29 31 32 34 35 37 39 LCS_GDT Y 38 Y 38 6 6 22 5 5 6 6 6 10 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT T 39 T 39 6 6 22 5 5 6 6 6 8 13 17 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT L 40 L 40 6 6 22 5 5 6 6 6 7 11 14 19 21 24 26 28 29 31 32 34 35 37 39 LCS_GDT C 41 C 41 6 6 22 3 3 6 6 6 7 10 14 19 21 24 26 28 29 31 32 34 35 37 39 LCS_AVERAGE LCS_A: 37.78 ( 23.14 29.39 60.80 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 13 15 15 17 17 17 17 19 21 24 26 28 29 31 32 34 35 37 39 GDT PERCENT_AT 24.39 31.71 36.59 36.59 41.46 41.46 41.46 41.46 46.34 51.22 58.54 63.41 68.29 70.73 75.61 78.05 82.93 85.37 90.24 95.12 GDT RMS_LOCAL 0.25 0.41 0.71 0.71 1.39 1.39 1.39 1.39 3.32 3.50 3.97 4.34 4.51 4.70 5.01 5.16 5.54 5.70 6.12 6.59 GDT RMS_ALL_AT 14.68 14.80 14.51 14.51 14.32 14.32 14.32 14.32 8.45 8.38 8.32 8.45 8.43 8.12 8.09 7.99 7.76 7.77 7.51 7.29 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.283 0 0.032 0.060 4.901 25.455 21.818 3.658 LGA Q 2 Q 2 1.750 0 0.219 0.925 5.528 65.909 39.798 5.528 LGA E 3 E 3 0.886 0 0.067 1.116 5.471 77.727 45.455 5.043 LGA T 4 T 4 1.026 0 0.029 0.053 1.351 77.727 72.468 1.351 LGA R 5 R 5 0.803 0 0.026 1.002 3.425 81.818 70.083 3.425 LGA K 6 K 6 0.416 0 0.068 1.192 6.462 86.364 54.343 6.388 LGA K 7 K 7 0.776 0 0.047 0.604 1.494 81.818 74.545 1.211 LGA C 8 C 8 0.970 0 0.065 0.722 3.998 81.818 67.273 3.998 LGA T 9 T 9 0.657 0 0.010 1.016 2.358 86.364 73.766 1.670 LGA E 10 E 10 0.220 0 0.020 0.213 1.677 100.000 83.232 1.677 LGA M 11 M 11 0.608 0 0.087 0.582 1.971 86.364 80.227 0.633 LGA K 12 K 12 1.516 0 0.024 0.723 2.346 54.545 60.000 1.897 LGA K 13 K 13 1.719 0 0.041 0.278 3.122 58.182 43.838 3.122 LGA K 14 K 14 0.911 0 0.024 0.912 4.646 77.727 57.172 4.646 LGA F 15 F 15 0.791 0 0.449 1.431 7.575 68.182 31.405 7.575 LGA K 16 K 16 0.933 0 0.613 1.044 5.125 51.818 35.758 4.034 LGA N 17 N 17 3.441 0 0.018 1.119 7.309 17.273 24.318 3.731 LGA C 18 C 18 8.675 0 0.619 0.785 10.565 0.000 0.000 9.033 LGA E 19 E 19 11.566 0 0.191 0.642 13.205 0.000 0.000 11.181 LGA V 20 V 20 14.591 0 0.071 1.085 17.080 0.000 0.000 17.080 LGA R 21 R 21 17.326 0 0.065 1.090 19.070 0.000 0.000 18.460 LGA C 22 C 22 20.353 0 0.645 1.113 22.031 0.000 0.000 20.268 LGA D 23 D 23 22.646 0 0.111 0.975 23.530 0.000 0.000 23.198 LGA E 24 E 24 25.457 0 0.650 0.897 26.718 0.000 0.000 26.718 LGA S 25 S 25 28.568 0 0.540 0.722 29.459 0.000 0.000 27.695 LGA N 26 N 26 27.615 0 0.148 0.564 28.883 0.000 0.000 24.881 LGA H 27 H 27 20.559 0 0.504 0.693 23.019 0.000 0.000 17.315 LGA C 28 C 28 20.303 0 0.041 0.781 22.688 0.000 0.000 22.688 LGA V 29 V 29 15.721 0 0.057 0.989 18.472 0.000 0.000 14.263 LGA E 30 E 30 15.983 0 0.028 0.933 19.476 0.000 0.000 17.689 LGA V 31 V 31 14.917 0 0.090 0.904 17.730 0.000 0.000 17.730 LGA R 32 R 32 13.361 0 0.225 1.149 14.038 0.000 0.000 9.378 LGA C 33 C 33 16.838 0 0.234 0.262 20.243 0.000 0.000 20.243 LGA S 34 S 34 15.790 0 0.075 0.679 16.785 0.000 0.000 15.058 LGA D 35 D 35 19.881 0 0.248 0.879 23.757 0.000 0.000 23.757 LGA T 36 T 36 22.562 0 0.262 0.357 25.486 0.000 0.000 24.835 LGA K 37 K 37 20.486 0 0.039 1.436 25.422 0.000 0.000 25.422 LGA Y 38 Y 38 17.365 0 0.017 1.390 18.199 0.000 0.000 15.030 LGA T 39 T 39 15.200 0 0.109 0.967 16.230 0.000 0.000 16.215 LGA L 40 L 40 12.322 0 0.535 0.553 13.209 0.000 0.000 12.487 LGA C 41 C 41 14.972 0 0.487 1.327 18.507 0.000 0.000 18.507 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 7.159 7.072 7.961 28.758 22.817 10.776 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.39 46.951 43.205 1.143 LGA_LOCAL RMSD: 1.388 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.324 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 7.159 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.470620 * X + -0.867787 * Y + 0.159570 * Z + -0.720848 Y_new = 0.520805 * X + 0.127221 * Y + -0.844143 * Z + -1.692132 Z_new = 0.712235 * X + 0.480376 * Y + 0.511820 * Z + 6.628736 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.835974 -0.792678 0.753717 [DEG: 47.8978 -45.4171 43.1848 ] ZXZ: 0.186828 1.033494 0.977417 [DEG: 10.7045 59.2148 56.0018 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS458_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS458_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.39 43.205 7.16 REMARK ---------------------------------------------------------- MOLECULE T0955TS458_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 CB SER 1 -1.166 -13.446 -1.408 1.00 1.92 C ATOM 2 OG SER 1 -1.675 -14.305 -2.411 1.00 1.92 O ATOM 4 C SER 1 -1.226 -12.796 1.004 1.00 1.92 C ATOM 5 O SER 1 -1.607 -11.624 1.113 1.00 1.92 O ATOM 8 N SER 1 -3.316 -13.481 -0.167 1.00 1.92 N ATOM 10 CA SER 1 -1.847 -13.708 -0.059 1.00 1.92 C ATOM 11 N GLN 2 -0.310 -13.353 1.810 1.00 2.31 N ATOM 13 CA GLN 2 0.413 -12.619 2.870 1.00 2.31 C ATOM 14 CB GLN 2 1.152 -13.569 3.817 1.00 2.31 C ATOM 15 CG GLN 2 0.246 -14.421 4.699 1.00 2.31 C ATOM 16 CD GLN 2 1.024 -15.350 5.612 1.00 2.31 C ATOM 17 OE1 GLN 2 1.304 -16.494 5.258 1.00 2.31 O ATOM 18 NE2 GLN 2 1.377 -14.860 6.797 1.00 2.31 N ATOM 21 C GLN 2 1.408 -11.611 2.283 1.00 2.31 C ATOM 22 O GLN 2 1.580 -10.523 2.837 1.00 2.31 O ATOM 23 N GLU 3 2.036 -11.985 1.156 1.00 2.00 N ATOM 25 CA GLU 3 3.033 -11.161 0.434 1.00 2.00 C ATOM 26 CB GLU 3 3.626 -11.932 -0.752 1.00 2.00 C ATOM 27 CG GLU 3 4.508 -13.116 -0.368 1.00 2.00 C ATOM 28 CD GLU 3 5.067 -13.846 -1.575 1.00 2.00 C ATOM 29 OE1 GLU 3 6.167 -13.479 -2.038 1.00 2.00 O ATOM 30 OE2 GLU 3 4.407 -14.790 -2.060 1.00 2.00 O ATOM 31 C GLU 3 2.488 -9.805 -0.050 1.00 2.00 C ATOM 32 O GLU 3 3.173 -8.785 0.091 1.00 2.00 O ATOM 33 N THR 4 1.270 -9.807 -0.619 1.00 2.45 N ATOM 35 CA THR 4 0.592 -8.584 -1.103 1.00 2.45 C ATOM 36 CB THR 4 -0.618 -8.902 -2.075 1.00 2.45 C ATOM 37 OG1 THR 4 -1.226 -7.680 -2.515 1.00 2.45 O ATOM 39 CG2 THR 4 -1.684 -9.801 -1.424 1.00 2.45 C ATOM 40 C THR 4 0.179 -7.690 0.092 1.00 2.45 C ATOM 41 O THR 4 0.298 -6.462 0.021 1.00 2.45 O ATOM 42 N ARG 5 -0.251 -8.341 1.186 1.00 2.09 N ATOM 44 CA ARG 5 -0.671 -7.691 2.448 1.00 2.09 C ATOM 45 CB ARG 5 -1.329 -8.707 3.393 1.00 2.09 C ATOM 46 CG ARG 5 -2.682 -9.239 2.937 1.00 2.09 C ATOM 47 CD ARG 5 -3.170 -10.345 3.861 1.00 2.09 C ATOM 48 NE ARG 5 -4.412 -10.958 3.384 1.00 2.09 N ATOM 50 CZ ARG 5 -5.007 -12.018 3.933 1.00 2.09 C ATOM 51 NH1 ARG 5 -6.132 -12.481 3.407 1.00 2.09 N ATOM 54 NH2 ARG 5 -4.492 -12.623 5.000 1.00 2.09 N ATOM 57 C ARG 5 0.546 -7.049 3.142 1.00 2.09 C ATOM 58 O ARG 5 0.448 -5.935 3.669 1.00 2.09 O ATOM 59 N LYS 6 1.677 -7.770 3.124 1.00 2.41 N ATOM 61 CA LYS 6 2.967 -7.338 3.701 1.00 2.41 C ATOM 62 CB LYS 6 3.933 -8.517 3.816 1.00 2.41 C ATOM 63 CG LYS 6 3.659 -9.447 4.992 1.00 2.41 C ATOM 64 CD LYS 6 4.660 -10.591 5.035 1.00 2.41 C ATOM 65 CE LYS 6 4.386 -11.521 6.206 1.00 2.41 C ATOM 66 NZ LYS 6 5.359 -12.648 6.259 1.00 2.41 N ATOM 70 C LYS 6 3.607 -6.187 2.904 1.00 2.41 C ATOM 71 O LYS 6 4.243 -5.296 3.484 1.00 2.41 O ATOM 72 N LYS 7 3.440 -6.236 1.573 1.00 2.76 N ATOM 74 CA LYS 7 3.937 -5.219 0.622 1.00 2.76 C ATOM 75 CB LYS 7 3.717 -5.713 -0.819 1.00 2.76 C ATOM 76 CG LYS 7 4.747 -5.224 -1.845 1.00 2.76 C ATOM 77 CD LYS 7 4.449 -5.773 -3.230 1.00 2.76 C ATOM 78 CE LYS 7 5.476 -5.300 -4.245 1.00 2.76 C ATOM 79 NZ LYS 7 5.195 -5.835 -5.605 1.00 2.76 N ATOM 83 C LYS 7 3.115 -3.938 0.887 1.00 2.76 C ATOM 84 O LYS 7 3.649 -2.822 0.855 1.00 2.76 O ATOM 85 N CYS 8 1.824 -4.150 1.180 1.00 2.33 N ATOM 87 CA CYS 8 0.835 -3.109 1.494 1.00 2.33 C ATOM 88 CB CYS 8 -0.574 -3.707 1.449 1.00 2.33 C ATOM 89 SG CYS 8 -1.199 -4.029 -0.217 1.00 2.33 S ATOM 90 C CYS 8 1.092 -2.422 2.850 1.00 2.33 C ATOM 91 O CYS 8 0.921 -1.200 2.960 1.00 2.33 O ATOM 92 N THR 9 1.505 -3.208 3.861 1.00 2.53 N ATOM 94 CA THR 9 1.817 -2.703 5.216 1.00 2.53 C ATOM 95 CB THR 9 1.859 -3.854 6.307 1.00 2.53 C ATOM 96 OG1 THR 9 1.764 -3.272 7.614 1.00 2.53 O ATOM 98 CG2 THR 9 3.136 -4.696 6.244 1.00 2.53 C ATOM 99 C THR 9 3.095 -1.834 5.206 1.00 2.53 C ATOM 100 O THR 9 3.137 -0.774 5.838 1.00 2.53 O ATOM 101 N GLU 10 4.091 -2.285 4.427 1.00 3.41 N ATOM 103 CA GLU 10 5.395 -1.618 4.244 1.00 3.41 C ATOM 104 CB GLU 10 6.356 -2.562 3.496 1.00 3.41 C ATOM 105 CG GLU 10 7.831 -2.457 3.903 1.00 3.41 C ATOM 106 CD GLU 10 8.722 -3.405 3.122 1.00 3.41 C ATOM 107 OE1 GLU 10 9.231 -3.003 2.056 1.00 3.41 O ATOM 108 OE2 GLU 10 8.915 -4.552 3.577 1.00 3.41 O ATOM 109 C GLU 10 5.197 -0.298 3.460 1.00 3.41 C ATOM 110 O GLU 10 5.830 0.719 3.778 1.00 3.41 O ATOM 111 N MET 11 4.283 -0.332 2.476 1.00 3.38 N ATOM 113 CA MET 11 3.929 0.817 1.619 1.00 3.38 C ATOM 114 CG MET 11 3.861 0.242 -0.909 1.00 3.38 C ATOM 115 SD MET 11 5.057 -1.117 -1.027 1.00 3.38 S ATOM 116 CE MET 11 6.609 -0.226 -0.904 1.00 3.38 C ATOM 117 C MET 11 3.200 1.940 2.379 1.00 3.38 C ATOM 118 O MET 11 3.547 3.113 2.208 1.00 3.38 O ATOM 119 CB MET 11 3.093 0.360 0.414 1.00 3.38 C ATOM 120 N LYS 12 2.215 1.571 3.216 1.00 2.44 N ATOM 122 CA LYS 12 1.440 2.529 4.035 1.00 2.44 C ATOM 123 CB LYS 12 0.124 1.918 4.571 1.00 2.44 C ATOM 124 CG LYS 12 0.220 0.702 5.503 1.00 2.44 C ATOM 125 CD LYS 12 -1.154 0.309 6.026 1.00 2.44 C ATOM 126 CE LYS 12 -1.062 -0.835 7.024 1.00 2.44 C ATOM 127 NZ LYS 12 -2.399 -1.215 7.559 1.00 2.44 N ATOM 131 C LYS 12 2.279 3.182 5.155 1.00 2.44 C ATOM 132 O LYS 12 2.086 4.362 5.462 1.00 2.44 O ATOM 133 N LYS 13 3.199 2.399 5.744 1.00 3.61 N ATOM 135 CA LYS 13 4.115 2.854 6.813 1.00 3.61 C ATOM 136 CB LYS 13 4.872 1.672 7.432 1.00 3.61 C ATOM 137 CG LYS 13 4.061 0.851 8.424 1.00 3.61 C ATOM 138 CD LYS 13 4.880 -0.314 8.971 1.00 3.61 C ATOM 139 CE LYS 13 4.106 -1.131 10.002 1.00 3.61 C ATOM 140 NZ LYS 13 3.881 -0.404 11.287 1.00 3.61 N ATOM 144 C LYS 13 5.112 3.886 6.257 1.00 3.61 C ATOM 145 O LYS 13 5.452 4.856 6.942 1.00 3.61 O ATOM 146 N LYS 14 5.586 3.640 5.025 1.00 4.42 N ATOM 148 CA LYS 14 6.513 4.521 4.287 1.00 4.42 C ATOM 149 CB LYS 14 7.078 3.780 3.061 1.00 4.42 C ATOM 150 CG LYS 14 8.487 4.199 2.623 1.00 4.42 C ATOM 151 CD LYS 14 8.915 3.456 1.369 1.00 4.42 C ATOM 152 CE LYS 14 10.296 3.896 0.910 1.00 4.42 C ATOM 153 NZ LYS 14 10.710 3.197 -0.337 1.00 4.42 N ATOM 157 C LYS 14 5.764 5.807 3.853 1.00 4.42 C ATOM 158 O LYS 14 6.340 6.901 3.864 1.00 4.42 O ATOM 159 N PHE 15 4.486 5.634 3.481 1.00 3.72 N ATOM 161 CA PHE 15 3.573 6.700 3.016 1.00 3.72 C ATOM 162 CB PHE 15 2.319 6.069 2.350 1.00 3.72 C ATOM 163 CG PHE 15 1.703 6.894 1.214 1.00 3.72 C ATOM 164 CD1 PHE 15 2.094 6.682 -0.129 1.00 3.72 C ATOM 165 CD2 PHE 15 0.699 7.857 1.479 1.00 3.72 C ATOM 166 CE1 PHE 15 1.501 7.417 -1.192 1.00 3.72 C ATOM 167 CE2 PHE 15 0.095 8.599 0.427 1.00 3.72 C ATOM 168 CZ PHE 15 0.498 8.378 -0.912 1.00 3.72 C ATOM 169 C PHE 15 3.139 7.734 4.079 1.00 3.72 C ATOM 170 O PHE 15 3.018 8.921 3.756 1.00 3.72 O ATOM 171 N LYS 16 2.916 7.286 5.325 1.00 3.31 N ATOM 173 CA LYS 16 2.480 8.158 6.442 1.00 3.31 C ATOM 174 CB LYS 16 1.943 7.331 7.636 1.00 3.31 C ATOM 175 CG LYS 16 2.875 6.259 8.233 1.00 3.31 C ATOM 176 CD LYS 16 2.264 5.638 9.487 1.00 3.31 C ATOM 177 CE LYS 16 3.199 4.625 10.146 1.00 3.31 C ATOM 178 NZ LYS 16 4.427 5.238 10.737 1.00 3.31 N ATOM 182 C LYS 16 3.503 9.229 6.896 1.00 3.31 C ATOM 183 O LYS 16 4.623 8.893 7.309 1.00 3.31 O ATOM 184 N ASN 17 3.102 10.501 6.775 1.00 2.78 N ATOM 186 CA ASN 17 3.927 11.669 7.133 1.00 2.78 C ATOM 187 CB ASN 17 4.191 12.535 5.887 1.00 2.78 C ATOM 188 CG ASN 17 5.054 11.829 4.845 1.00 2.78 C ATOM 189 OD1 ASN 17 4.542 11.149 3.954 1.00 2.78 O ATOM 190 ND2 ASN 17 6.369 12.002 4.946 1.00 2.78 N ATOM 193 C ASN 17 3.269 12.527 8.225 1.00 2.78 C ATOM 194 O ASN 17 3.969 13.224 8.971 1.00 2.78 O ATOM 195 N CYS 18 1.934 12.447 8.324 1.00 2.69 N ATOM 197 CA CYS 18 1.129 13.207 9.299 1.00 2.69 C ATOM 198 CB CYS 18 -0.231 13.568 8.693 1.00 2.69 C ATOM 199 SG CYS 18 -1.194 12.155 8.096 1.00 2.69 S ATOM 200 C CYS 18 0.933 12.509 10.658 1.00 2.69 C ATOM 201 O CYS 18 1.000 13.169 11.702 1.00 2.69 O ATOM 202 N GLU 19 0.695 11.190 10.629 1.00 2.68 N ATOM 204 CA GLU 19 0.482 10.368 11.838 1.00 2.68 C ATOM 205 CB GLU 19 -0.851 9.578 11.754 1.00 2.68 C ATOM 206 CG GLU 19 -1.138 8.819 10.440 1.00 2.68 C ATOM 207 CD GLU 19 -2.461 8.076 10.471 1.00 2.68 C ATOM 208 OE1 GLU 19 -3.487 8.671 10.080 1.00 2.68 O ATOM 209 OE2 GLU 19 -2.472 6.897 10.883 1.00 2.68 O ATOM 210 C GLU 19 1.667 9.440 12.181 1.00 2.68 C ATOM 211 O GLU 19 2.147 8.694 11.316 1.00 2.68 O ATOM 212 N VAL 20 2.136 9.521 13.436 1.00 2.30 N ATOM 214 CA VAL 20 3.257 8.714 13.960 1.00 2.30 C ATOM 215 CB VAL 20 4.463 9.644 14.471 1.00 2.30 C ATOM 216 CG1 VAL 20 4.050 10.536 15.661 1.00 2.30 C ATOM 217 CG2 VAL 20 5.727 8.823 14.778 1.00 2.30 C ATOM 218 C VAL 20 2.745 7.711 15.031 1.00 2.30 C ATOM 219 O VAL 20 2.031 8.105 15.964 1.00 2.30 O ATOM 220 N ARG 21 3.087 6.428 14.849 1.00 1.84 N ATOM 222 CA ARG 21 2.702 5.329 15.756 1.00 1.84 C ATOM 223 CB ARG 21 1.683 4.384 15.092 1.00 1.84 C ATOM 224 CG ARG 21 0.293 4.987 14.910 1.00 1.84 C ATOM 225 CD ARG 21 -0.693 3.965 14.369 1.00 1.84 C ATOM 226 NE ARG 21 -2.035 4.532 14.219 1.00 1.84 N ATOM 228 CZ ARG 21 -3.175 3.868 14.410 1.00 1.84 C ATOM 229 NH1 ARG 21 -3.176 2.588 14.767 1.00 1.84 N ATOM 232 NH2 ARG 21 -4.332 4.495 14.246 1.00 1.84 N ATOM 235 C ARG 21 3.931 4.529 16.209 1.00 1.84 C ATOM 236 O ARG 21 4.873 4.344 15.428 1.00 1.84 O ATOM 237 N CYS 22 3.913 4.085 17.475 1.00 2.22 N ATOM 239 CA CYS 22 4.998 3.300 18.095 1.00 2.22 C ATOM 240 CB CYS 22 5.419 3.931 19.430 1.00 2.22 C ATOM 241 SG CYS 22 6.895 3.207 20.195 1.00 2.22 S ATOM 242 C CYS 22 4.550 1.847 18.321 1.00 2.22 C ATOM 243 O CYS 22 5.370 0.925 18.232 1.00 2.22 O ATOM 244 N ASP 23 3.239 1.663 18.571 1.00 2.20 N ATOM 246 CA ASP 23 2.537 0.370 18.824 1.00 2.20 C ATOM 247 CB ASP 23 1.964 -0.240 17.508 1.00 2.20 C ATOM 248 CG ASP 23 3.031 -0.499 16.436 1.00 2.20 C ATOM 249 OD1 ASP 23 3.288 0.408 15.615 1.00 2.20 O ATOM 250 OD2 ASP 23 3.598 -1.613 16.412 1.00 2.20 O ATOM 251 C ASP 23 3.193 -0.721 19.718 1.00 2.20 C ATOM 252 O ASP 23 4.375 -0.616 20.063 1.00 2.20 O ATOM 253 N GLU 24 2.403 -1.739 20.092 1.00 2.44 N ATOM 255 CA GLU 24 2.839 -2.870 20.936 1.00 2.44 C ATOM 256 CB GLU 24 1.723 -3.269 21.913 1.00 2.44 C ATOM 257 CG GLU 24 1.425 -2.240 23.002 1.00 2.44 C ATOM 258 CD GLU 24 0.311 -2.677 23.933 1.00 2.44 C ATOM 259 OE1 GLU 24 -0.863 -2.361 23.647 1.00 2.44 O ATOM 260 OE2 GLU 24 0.608 -3.336 24.952 1.00 2.44 O ATOM 261 C GLU 24 3.247 -4.083 20.079 1.00 2.44 C ATOM 262 O GLU 24 2.876 -4.155 18.902 1.00 2.44 O ATOM 263 N SER 25 4.013 -5.017 20.677 1.00 2.27 N ATOM 265 CA SER 25 4.533 -6.268 20.055 1.00 2.27 C ATOM 266 CB SER 25 3.381 -7.235 19.683 1.00 2.27 C ATOM 267 OG SER 25 3.864 -8.509 19.284 1.00 2.27 O ATOM 269 C SER 25 5.484 -6.024 18.855 1.00 2.27 C ATOM 270 O SER 25 5.819 -4.869 18.566 1.00 2.27 O ATOM 271 N ASN 26 5.913 -7.105 18.183 1.00 1.27 N ATOM 273 CA ASN 26 6.823 -7.055 17.018 1.00 1.27 C ATOM 274 CB ASN 26 7.537 -8.413 16.817 1.00 1.27 C ATOM 275 CG ASN 26 6.580 -9.613 16.836 1.00 1.27 C ATOM 276 OD1 ASN 26 6.067 -10.029 15.796 1.00 1.27 O ATOM 277 ND2 ASN 26 6.355 -10.175 18.021 1.00 1.27 N ATOM 280 C ASN 26 6.174 -6.564 15.703 1.00 1.27 C ATOM 281 O ASN 26 6.730 -5.684 15.034 1.00 1.27 O ATOM 282 N HIS 27 5.014 -7.141 15.355 1.00 1.50 N ATOM 284 CA HIS 27 4.251 -6.787 14.144 1.00 1.50 C ATOM 285 CG HIS 27 4.036 -7.594 11.718 1.00 1.50 C ATOM 286 CD2 HIS 27 4.884 -7.718 10.666 1.00 1.50 C ATOM 287 ND1 HIS 27 2.890 -7.015 11.214 1.00 1.50 N ATOM 289 CE1 HIS 27 3.038 -6.796 9.918 1.00 1.50 C ATOM 290 NE2 HIS 27 4.239 -7.215 9.563 1.00 1.50 N ATOM 292 C HIS 27 2.832 -6.356 14.565 1.00 1.50 C ATOM 293 O HIS 27 2.193 -7.028 15.387 1.00 1.50 O ATOM 294 CB HIS 27 4.186 -7.984 13.162 1.00 1.50 C ATOM 295 N CYS 28 2.375 -5.221 14.018 1.00 2.12 N ATOM 297 CA CYS 28 1.045 -4.650 14.290 1.00 2.12 C ATOM 298 CB CYS 28 1.162 -3.178 14.716 1.00 2.12 C ATOM 299 SG CYS 28 2.072 -2.116 13.564 1.00 2.12 S ATOM 300 C CYS 28 0.140 -4.769 13.057 1.00 2.12 C ATOM 301 O CYS 28 0.576 -4.470 11.936 1.00 2.12 O ATOM 302 N VAL 29 -1.101 -5.234 13.267 1.00 2.65 N ATOM 304 CA VAL 29 -2.088 -5.395 12.183 1.00 2.65 C ATOM 305 CB VAL 29 -2.632 -6.879 12.050 1.00 2.65 C ATOM 306 CG1 VAL 29 -1.566 -7.769 11.427 1.00 2.65 C ATOM 307 CG2 VAL 29 -3.061 -7.460 13.416 1.00 2.65 C ATOM 308 C VAL 29 -3.249 -4.383 12.248 1.00 2.65 C ATOM 309 O VAL 29 -3.903 -4.230 13.290 1.00 2.65 O ATOM 310 N GLU 30 -3.444 -3.671 11.131 1.00 2.12 N ATOM 312 CA GLU 30 -4.499 -2.660 10.942 1.00 2.12 C ATOM 313 CB GLU 30 -3.911 -1.244 10.846 1.00 2.12 C ATOM 314 CG GLU 30 -3.343 -0.703 12.157 1.00 2.12 C ATOM 315 CD GLU 30 -2.797 0.707 12.025 1.00 2.12 C ATOM 316 OE1 GLU 30 -1.585 0.854 11.762 1.00 2.12 O ATOM 317 OE2 GLU 30 -3.577 1.668 12.190 1.00 2.12 O ATOM 318 C GLU 30 -5.214 -3.010 9.637 1.00 2.12 C ATOM 319 O GLU 30 -4.564 -3.464 8.687 1.00 2.12 O ATOM 320 N VAL 31 -6.539 -2.814 9.595 1.00 3.35 N ATOM 322 CA VAL 31 -7.336 -3.112 8.393 1.00 3.35 C ATOM 323 CB VAL 31 -8.531 -4.118 8.677 1.00 3.35 C ATOM 324 CG1 VAL 31 -7.992 -5.533 8.820 1.00 3.35 C ATOM 325 CG2 VAL 31 -9.323 -3.730 9.949 1.00 3.35 C ATOM 326 C VAL 31 -7.842 -1.855 7.661 1.00 3.35 C ATOM 327 O VAL 31 -8.458 -0.967 8.268 1.00 3.35 O ATOM 328 N ARG 32 -7.513 -1.786 6.365 1.00 2.47 N ATOM 330 CA ARG 32 -7.910 -0.704 5.448 1.00 2.47 C ATOM 331 CB ARG 32 -6.703 0.156 5.001 1.00 2.47 C ATOM 332 CG ARG 32 -6.020 0.942 6.132 1.00 2.47 C ATOM 333 CD ARG 32 -5.673 2.384 5.737 1.00 2.47 C ATOM 334 NE ARG 32 -4.642 2.480 4.699 1.00 2.47 N ATOM 336 CZ ARG 32 -4.171 3.621 4.193 1.00 2.47 C ATOM 337 NH1 ARG 32 -4.624 4.799 4.613 1.00 2.47 N ATOM 340 NH2 ARG 32 -3.239 3.585 3.251 1.00 2.47 N ATOM 343 C ARG 32 -8.527 -1.457 4.263 1.00 2.47 C ATOM 344 O ARG 32 -7.911 -2.392 3.737 1.00 2.47 O ATOM 345 N CYS 33 -9.752 -1.075 3.884 1.00 3.16 N ATOM 347 CA CYS 33 -10.499 -1.730 2.799 1.00 3.16 C ATOM 348 CB CYS 33 -11.879 -2.147 3.315 1.00 3.16 C ATOM 349 SG CYS 33 -11.835 -3.283 4.722 1.00 3.16 S ATOM 350 C CYS 33 -10.639 -0.889 1.524 1.00 3.16 C ATOM 351 O CYS 33 -10.736 -1.447 0.424 1.00 3.16 O ATOM 352 N SER 34 -10.615 0.446 1.681 1.00 3.10 N ATOM 354 CA SER 34 -10.725 1.459 0.598 1.00 3.10 C ATOM 355 CB SER 34 -9.487 1.421 -0.332 1.00 3.10 C ATOM 356 OG SER 34 -9.479 2.504 -1.248 1.00 3.10 O ATOM 358 C SER 34 -12.051 1.458 -0.209 1.00 3.10 C ATOM 359 O SER 34 -12.771 2.464 -0.194 1.00 3.10 O ATOM 360 N ASP 35 -12.355 0.345 -0.897 1.00 4.52 N ATOM 362 CA ASP 35 -13.583 0.179 -1.706 1.00 4.52 C ATOM 363 CB ASP 35 -13.222 -0.048 -3.195 1.00 4.52 C ATOM 364 CG ASP 35 -14.350 0.343 -4.154 1.00 4.52 C ATOM 365 OD1 ASP 35 -14.384 1.515 -4.593 1.00 4.52 O ATOM 366 OD2 ASP 35 -15.187 -0.525 -4.481 1.00 4.52 O ATOM 367 C ASP 35 -14.408 -1.000 -1.129 1.00 4.52 C ATOM 368 O ASP 35 -15.396 -0.768 -0.423 1.00 4.52 O ATOM 369 N THR 36 -13.993 -2.240 -1.440 1.00 6.25 N ATOM 371 CA THR 36 -14.619 -3.494 -0.961 1.00 6.25 C ATOM 372 CB THR 36 -14.668 -4.568 -2.102 1.00 6.25 C ATOM 373 OG1 THR 36 -14.892 -3.919 -3.360 1.00 6.25 O ATOM 375 CG2 THR 36 -15.808 -5.570 -1.869 1.00 6.25 C ATOM 376 C THR 36 -13.689 -3.950 0.190 1.00 6.25 C ATOM 377 O THR 36 -12.689 -3.267 0.441 1.00 6.25 O ATOM 378 N LYS 37 -13.980 -5.074 0.869 1.00 5.36 N ATOM 380 CA LYS 37 -13.121 -5.533 1.984 1.00 5.36 C ATOM 381 CB LYS 37 -13.819 -6.632 2.801 1.00 5.36 C ATOM 382 CG LYS 37 -15.035 -6.168 3.596 1.00 5.36 C ATOM 383 CD LYS 37 -15.670 -7.326 4.350 1.00 5.36 C ATOM 384 CE LYS 37 -16.888 -6.873 5.137 1.00 5.36 C ATOM 385 NZ LYS 37 -17.527 -8.004 5.866 1.00 5.36 N ATOM 389 C LYS 37 -11.747 -6.023 1.478 1.00 5.36 C ATOM 390 O LYS 37 -11.660 -6.951 0.662 1.00 5.36 O ATOM 391 N TYR 38 -10.697 -5.337 1.950 1.00 4.10 N ATOM 393 CA TYR 38 -9.288 -5.597 1.615 1.00 4.10 C ATOM 394 CB TYR 38 -8.758 -4.520 0.624 1.00 4.10 C ATOM 395 CG TYR 38 -7.574 -4.907 -0.275 1.00 4.10 C ATOM 396 CD1 TYR 38 -6.237 -4.662 0.127 1.00 4.10 C ATOM 397 CE1 TYR 38 -5.140 -4.982 -0.720 1.00 4.10 C ATOM 398 CD2 TYR 38 -7.783 -5.487 -1.551 1.00 4.10 C ATOM 399 CE2 TYR 38 -6.692 -5.811 -2.404 1.00 4.10 C ATOM 400 CZ TYR 38 -5.378 -5.555 -1.980 1.00 4.10 C ATOM 401 OH TYR 38 -4.317 -5.867 -2.800 1.00 4.10 O ATOM 403 C TYR 38 -8.444 -5.586 2.896 1.00 4.10 C ATOM 404 O TYR 38 -8.772 -4.852 3.836 1.00 4.10 O ATOM 405 N THR 39 -7.410 -6.438 2.951 1.00 3.38 N ATOM 407 CA THR 39 -6.471 -6.493 4.087 1.00 3.38 C ATOM 408 CB THR 39 -6.286 -7.931 4.662 1.00 3.38 C ATOM 409 OG1 THR 39 -6.059 -8.856 3.591 1.00 3.38 O ATOM 411 CG2 THR 39 -7.519 -8.357 5.450 1.00 3.38 C ATOM 412 C THR 39 -5.123 -5.934 3.594 1.00 3.38 C ATOM 413 O THR 39 -4.610 -6.359 2.548 1.00 3.38 O ATOM 414 N LEU 40 -4.594 -4.950 4.333 1.00 1.80 N ATOM 416 CA LEU 40 -3.324 -4.277 4.019 1.00 1.80 C ATOM 417 CB LEU 40 -3.517 -2.745 4.019 1.00 1.80 C ATOM 418 CG LEU 40 -3.734 -1.950 2.715 1.00 1.80 C ATOM 419 CD1 LEU 40 -5.206 -1.870 2.280 1.00 1.80 C ATOM 420 CD2 LEU 40 -3.197 -0.544 2.930 1.00 1.80 C ATOM 421 C LEU 40 -2.233 -4.671 5.020 1.00 1.80 C ATOM 422 O LEU 40 -1.090 -4.212 4.916 1.00 1.80 O ATOM 423 N CYS 41 -2.593 -5.563 5.952 1.00 1.56 N ATOM 425 CA CYS 41 -1.699 -6.060 7.005 1.00 1.56 C ATOM 426 CB CYS 41 -2.295 -5.742 8.378 1.00 1.56 C ATOM 427 SG CYS 41 -3.974 -6.368 8.642 1.00 1.56 S ATOM 428 C CYS 41 -1.430 -7.559 6.874 1.00 1.56 C ATOM 429 O CYS 41 -2.349 -8.291 6.446 1.00 1.56 O ATOM 430 OXT CYS 41 -0.300 -7.982 7.194 1.00 1.56 O TER 431 CYS 41 END