####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS457_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 1 - 39 4.54 5.51 LCS_AVERAGE: 93.22 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 6 - 34 1.92 6.31 LCS_AVERAGE: 59.07 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 17 - 33 0.96 7.08 LONGEST_CONTINUOUS_SEGMENT: 17 18 - 34 0.97 6.94 LCS_AVERAGE: 32.42 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 21 39 3 3 13 20 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT Q 2 Q 2 14 21 39 8 12 15 18 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT E 3 E 3 14 21 39 8 12 15 18 24 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT T 4 T 4 14 21 39 8 12 15 18 22 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT R 5 R 5 14 21 39 8 12 15 18 24 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT K 6 K 6 14 29 39 8 12 15 21 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT K 7 K 7 14 29 39 8 12 15 18 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT C 8 C 8 14 29 39 8 12 15 18 22 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT T 9 T 9 14 29 39 8 12 15 20 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT E 10 E 10 14 29 39 5 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT M 11 M 11 14 29 39 5 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT K 12 K 12 14 29 39 3 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT K 13 K 13 14 29 39 4 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT K 14 K 14 14 29 39 8 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT F 15 F 15 14 29 39 5 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT K 16 K 16 7 29 39 4 5 10 17 22 27 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT N 17 N 17 17 29 39 5 13 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT C 18 C 18 17 29 39 4 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT E 19 E 19 17 29 39 4 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT V 20 V 20 17 29 39 5 13 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT R 21 R 21 17 29 39 5 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT C 22 C 22 17 29 39 5 15 19 23 24 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT D 23 D 23 17 29 39 3 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT E 24 E 24 17 29 39 4 13 19 23 24 27 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT S 25 S 25 17 29 39 4 13 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT N 26 N 26 17 29 39 4 13 16 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT H 27 H 27 17 29 39 5 13 17 23 24 28 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT C 28 C 28 17 29 39 4 9 16 18 24 25 31 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT V 29 V 29 17 29 39 5 13 17 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT E 30 E 30 17 29 39 5 13 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT V 31 V 31 17 29 39 5 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT R 32 R 32 17 29 39 5 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT C 33 C 33 17 29 39 5 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT S 34 S 34 17 29 39 3 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT D 35 D 35 4 7 39 3 4 6 9 17 23 27 33 35 35 35 36 36 36 36 37 37 37 37 37 LCS_GDT T 36 T 36 4 7 39 3 4 6 6 6 9 13 25 28 29 34 36 36 36 36 37 37 37 37 37 LCS_GDT K 37 K 37 5 7 39 3 4 5 5 6 7 9 9 14 15 16 27 29 29 30 37 37 37 37 37 LCS_GDT Y 38 Y 38 5 7 39 3 4 6 6 6 7 9 11 13 13 17 19 21 22 23 31 31 32 34 36 LCS_GDT T 39 T 39 5 7 39 3 4 5 5 6 7 9 11 14 15 16 18 20 22 23 23 29 30 36 36 LCS_GDT L 40 L 40 5 6 23 3 4 5 5 6 7 9 11 14 16 17 19 21 22 23 23 26 26 34 35 LCS_GDT C 41 C 41 5 6 23 3 4 5 5 5 6 9 11 14 15 17 19 21 22 23 23 29 30 34 35 LCS_AVERAGE LCS_A: 61.57 ( 32.42 59.07 93.22 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 15 19 23 25 29 32 34 35 35 35 36 36 36 36 37 37 37 37 37 GDT PERCENT_AT 19.51 36.59 46.34 56.10 60.98 70.73 78.05 82.93 85.37 85.37 85.37 87.80 87.80 87.80 87.80 90.24 90.24 90.24 90.24 90.24 GDT RMS_LOCAL 0.31 0.75 0.94 1.25 1.69 1.89 2.09 2.23 2.45 2.45 2.45 2.89 2.89 2.89 2.89 3.48 3.48 3.48 3.48 3.48 GDT RMS_ALL_AT 9.46 6.39 6.41 6.41 6.21 6.25 6.23 6.23 6.04 6.04 6.04 5.84 5.84 5.84 5.84 5.68 5.68 5.68 5.68 5.68 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.413 0 0.094 0.655 6.094 30.455 20.606 6.094 LGA Q 2 Q 2 2.754 0 0.200 1.377 5.090 32.727 20.000 3.142 LGA E 3 E 3 2.951 0 0.038 1.417 8.907 25.000 13.131 7.953 LGA T 4 T 4 3.757 0 0.031 1.090 6.673 14.545 9.351 6.673 LGA R 5 R 5 3.063 0 0.060 1.425 7.057 25.455 19.174 7.057 LGA K 6 K 6 1.386 0 0.015 1.174 6.302 55.000 33.737 6.302 LGA K 7 K 7 2.543 0 0.016 0.654 6.324 32.727 16.566 6.324 LGA C 8 C 8 3.138 0 0.058 0.751 7.107 25.000 18.485 7.107 LGA T 9 T 9 2.458 0 0.039 0.111 2.948 41.364 36.883 2.882 LGA E 10 E 10 1.250 0 0.094 0.592 3.714 61.818 41.212 3.632 LGA M 11 M 11 0.953 0 0.013 1.053 4.364 73.636 61.364 4.364 LGA K 12 K 12 1.620 0 0.048 0.668 4.085 51.364 41.010 4.072 LGA K 13 K 13 1.960 0 0.076 0.577 4.472 50.909 31.515 3.164 LGA K 14 K 14 1.310 0 0.031 0.621 2.627 73.636 56.970 1.587 LGA F 15 F 15 0.335 0 0.340 0.446 2.506 82.273 67.273 2.112 LGA K 16 K 16 3.122 0 0.675 1.516 5.314 18.636 25.455 2.761 LGA N 17 N 17 1.912 0 0.331 0.555 2.801 45.000 46.818 1.298 LGA C 18 C 18 1.185 0 0.033 0.049 2.242 55.000 66.970 0.346 LGA E 19 E 19 1.621 0 0.144 0.460 2.633 58.182 51.515 1.837 LGA V 20 V 20 2.150 0 0.039 0.053 2.714 35.455 35.065 2.558 LGA R 21 R 21 1.799 0 0.096 1.220 8.716 50.909 24.793 8.021 LGA C 22 C 22 2.350 0 0.033 0.168 2.983 38.182 34.545 2.934 LGA D 23 D 23 2.142 0 0.295 1.121 3.284 35.455 39.091 1.909 LGA E 24 E 24 3.466 0 0.150 0.547 5.715 20.909 10.101 5.715 LGA S 25 S 25 1.386 0 0.069 0.656 4.134 61.818 50.606 4.134 LGA N 26 N 26 1.925 0 0.137 1.180 3.760 43.182 37.273 3.760 LGA H 27 H 27 3.121 0 0.113 0.327 4.001 18.182 20.000 2.433 LGA C 28 C 28 3.882 0 0.222 0.709 5.802 16.364 11.818 5.802 LGA V 29 V 29 2.357 0 0.075 0.098 3.223 41.818 35.844 2.352 LGA E 30 E 30 1.274 0 0.071 0.689 2.399 65.909 66.263 2.399 LGA V 31 V 31 0.526 0 0.064 0.088 1.550 90.909 82.597 0.775 LGA R 32 R 32 0.779 0 0.061 0.756 3.353 82.273 52.893 2.819 LGA C 33 C 33 1.152 0 0.527 0.605 4.144 46.818 55.758 0.722 LGA S 34 S 34 1.232 0 0.430 0.644 5.540 39.545 37.879 3.181 LGA D 35 D 35 6.951 0 0.486 1.154 10.545 1.364 0.682 10.545 LGA T 36 T 36 10.990 0 0.140 1.115 12.501 0.000 0.000 12.501 LGA K 37 K 37 14.284 0 0.040 1.161 22.724 0.000 0.000 22.724 LGA Y 38 Y 38 15.761 0 0.150 1.327 16.575 0.000 0.000 10.053 LGA T 39 T 39 15.871 0 0.098 0.106 16.015 0.000 0.000 15.858 LGA L 40 L 40 16.120 0 0.168 0.943 16.551 0.000 0.000 16.104 LGA C 41 C 41 16.997 0 0.107 0.838 18.436 0.000 0.000 15.962 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.453 5.539 6.000 37.605 31.055 21.064 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 34 2.23 66.463 67.421 1.458 LGA_LOCAL RMSD: 2.232 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.231 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.453 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.584469 * X + -0.237392 * Y + -0.775913 * Z + -0.034468 Y_new = -0.463970 * X + 0.686719 * Y + -0.559597 * Z + -13.816362 Z_new = 0.665678 * X + 0.687068 * Y + 0.291223 * Z + -3.536012 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.670969 -0.728402 1.169888 [DEG: -38.4437 -41.7343 67.0297 ] ZXZ: -0.945976 1.275291 0.769587 [DEG: -54.2004 73.0688 44.0941 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS457_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 34 2.23 67.421 5.45 REMARK ---------------------------------------------------------- MOLECULE T0955TS457_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 -0.034 -13.816 -3.536 1.00 0.00 N ATOM 2 CA SER 1 0.818 -14.493 -2.565 1.00 0.00 C ATOM 3 C SER 1 0.803 -13.773 -1.223 1.00 0.00 C ATOM 4 O SER 1 0.515 -12.578 -1.152 1.00 0.00 O ATOM 5 CB SER 1 2.238 -14.577 -3.088 1.00 0.00 C ATOM 6 OG SER 1 2.830 -13.309 -3.142 1.00 0.00 O ATOM 14 N GLN 2 1.113 -14.508 -0.160 1.00 0.00 N ATOM 15 CA GLN 2 1.232 -13.919 1.169 1.00 0.00 C ATOM 16 C GLN 2 2.426 -12.977 1.249 1.00 0.00 C ATOM 17 O GLN 2 2.394 -11.979 1.968 1.00 0.00 O ATOM 18 CB GLN 2 1.360 -15.016 2.230 1.00 0.00 C ATOM 19 CG GLN 2 0.102 -15.845 2.423 1.00 0.00 C ATOM 20 CD GLN 2 -1.098 -14.997 2.799 1.00 0.00 C ATOM 21 OE1 GLN 2 -1.001 -14.096 3.636 1.00 0.00 O ATOM 22 NE2 GLN 2 -2.239 -15.281 2.180 1.00 0.00 N ATOM 31 N GLU 3 3.479 -13.299 0.506 1.00 0.00 N ATOM 32 CA GLU 3 4.677 -12.470 0.473 1.00 0.00 C ATOM 33 C GLU 3 4.383 -11.100 -0.127 1.00 0.00 C ATOM 34 O GLU 3 4.910 -10.086 0.330 1.00 0.00 O ATOM 35 CB GLU 3 5.784 -13.160 -0.326 1.00 0.00 C ATOM 36 CG GLU 3 6.350 -14.411 0.334 1.00 0.00 C ATOM 37 CD GLU 3 6.986 -14.131 1.666 1.00 0.00 C ATOM 38 OE1 GLU 3 7.816 -13.256 1.737 1.00 0.00 O ATOM 39 OE2 GLU 3 6.641 -14.793 2.617 1.00 0.00 O ATOM 46 N THR 4 3.539 -11.079 -1.153 1.00 0.00 N ATOM 47 CA THR 4 3.073 -9.826 -1.735 1.00 0.00 C ATOM 48 C THR 4 2.295 -9.001 -0.718 1.00 0.00 C ATOM 49 O THR 4 2.572 -7.817 -0.523 1.00 0.00 O ATOM 50 CB THR 4 2.195 -10.083 -2.974 1.00 0.00 C ATOM 51 OG1 THR 4 2.964 -10.760 -3.976 1.00 0.00 O ATOM 52 CG2 THR 4 1.672 -8.772 -3.539 1.00 0.00 C ATOM 60 N ARG 5 1.321 -9.633 -0.072 1.00 0.00 N ATOM 61 CA ARG 5 0.478 -8.949 0.902 1.00 0.00 C ATOM 62 C ARG 5 1.318 -8.294 1.991 1.00 0.00 C ATOM 63 O ARG 5 1.114 -7.128 2.327 1.00 0.00 O ATOM 64 CB ARG 5 -0.502 -9.924 1.539 1.00 0.00 C ATOM 65 CG ARG 5 -1.448 -9.305 2.556 1.00 0.00 C ATOM 66 CD ARG 5 -2.362 -10.318 3.141 1.00 0.00 C ATOM 67 NE ARG 5 -1.639 -11.338 3.883 1.00 0.00 N ATOM 68 CZ ARG 5 -1.128 -11.168 5.118 1.00 0.00 C ATOM 69 NH1 ARG 5 -1.270 -10.016 5.736 1.00 0.00 N ATOM 70 NH2 ARG 5 -0.486 -12.161 5.709 1.00 0.00 N ATOM 84 N LYS 6 2.262 -9.050 2.539 1.00 0.00 N ATOM 85 CA LYS 6 3.116 -8.553 3.613 1.00 0.00 C ATOM 86 C LYS 6 3.935 -7.353 3.155 1.00 0.00 C ATOM 87 O LYS 6 3.988 -6.329 3.835 1.00 0.00 O ATOM 88 CB LYS 6 4.042 -9.661 4.117 1.00 0.00 C ATOM 89 CG LYS 6 3.352 -10.720 4.966 1.00 0.00 C ATOM 90 CD LYS 6 4.358 -11.691 5.564 1.00 0.00 C ATOM 91 CE LYS 6 4.988 -12.568 4.490 1.00 0.00 C ATOM 92 NZ LYS 6 5.898 -13.591 5.072 1.00 0.00 N ATOM 106 N LYS 7 4.573 -7.486 1.996 1.00 0.00 N ATOM 107 CA LYS 7 5.398 -6.417 1.449 1.00 0.00 C ATOM 108 C LYS 7 4.564 -5.181 1.138 1.00 0.00 C ATOM 109 O LYS 7 5.021 -4.051 1.313 1.00 0.00 O ATOM 110 CB LYS 7 6.124 -6.891 0.189 1.00 0.00 C ATOM 111 CG LYS 7 7.246 -7.888 0.448 1.00 0.00 C ATOM 112 CD LYS 7 7.879 -8.358 -0.853 1.00 0.00 C ATOM 113 CE LYS 7 8.970 -9.387 -0.599 1.00 0.00 C ATOM 114 NZ LYS 7 9.587 -9.870 -1.864 1.00 0.00 N ATOM 128 N CYS 8 3.338 -5.401 0.676 1.00 0.00 N ATOM 129 CA CYS 8 2.414 -4.308 0.401 1.00 0.00 C ATOM 130 C CYS 8 1.947 -3.644 1.690 1.00 0.00 C ATOM 131 O CYS 8 1.797 -2.423 1.751 1.00 0.00 O ATOM 132 CB CYS 8 1.198 -4.813 -0.375 1.00 0.00 C ATOM 133 SG CYS 8 1.557 -5.286 -2.084 1.00 0.00 S ATOM 138 N THR 9 1.719 -4.454 2.718 1.00 0.00 N ATOM 139 CA THR 9 1.239 -3.950 3.999 1.00 0.00 C ATOM 140 C THR 9 2.187 -2.903 4.570 1.00 0.00 C ATOM 141 O THR 9 1.753 -1.921 5.171 1.00 0.00 O ATOM 142 CB THR 9 1.060 -5.095 5.013 1.00 0.00 C ATOM 143 OG1 THR 9 0.093 -6.030 4.516 1.00 0.00 O ATOM 144 CG2 THR 9 0.591 -4.551 6.354 1.00 0.00 C ATOM 152 N GLU 10 3.484 -3.121 4.379 1.00 0.00 N ATOM 153 CA GLU 10 4.498 -2.212 4.899 1.00 0.00 C ATOM 154 C GLU 10 4.309 -0.804 4.351 1.00 0.00 C ATOM 155 O GLU 10 4.716 0.176 4.975 1.00 0.00 O ATOM 156 CB GLU 10 5.898 -2.720 4.553 1.00 0.00 C ATOM 157 CG GLU 10 6.314 -3.979 5.301 1.00 0.00 C ATOM 158 CD GLU 10 7.708 -4.428 4.963 1.00 0.00 C ATOM 159 OE1 GLU 10 8.315 -3.826 4.111 1.00 0.00 O ATOM 160 OE2 GLU 10 8.167 -5.375 5.558 1.00 0.00 O ATOM 167 N MET 11 3.687 -0.708 3.180 1.00 0.00 N ATOM 168 CA MET 11 3.479 0.578 2.525 1.00 0.00 C ATOM 169 C MET 11 2.669 1.520 3.407 1.00 0.00 C ATOM 170 O MET 11 2.792 2.740 3.304 1.00 0.00 O ATOM 171 CB MET 11 2.787 0.378 1.180 1.00 0.00 C ATOM 172 CG MET 11 3.610 -0.392 0.156 1.00 0.00 C ATOM 173 SD MET 11 2.689 -0.740 -1.356 1.00 0.00 S ATOM 174 CE MET 11 2.683 0.875 -2.128 1.00 0.00 C ATOM 184 N LYS 12 1.839 0.946 4.271 1.00 0.00 N ATOM 185 CA LYS 12 0.972 1.734 5.139 1.00 0.00 C ATOM 186 C LYS 12 1.786 2.584 6.106 1.00 0.00 C ATOM 187 O LYS 12 1.308 3.605 6.603 1.00 0.00 O ATOM 188 CB LYS 12 0.019 0.822 5.914 1.00 0.00 C ATOM 189 CG LYS 12 -0.980 0.071 5.044 1.00 0.00 C ATOM 190 CD LYS 12 -1.906 -0.795 5.886 1.00 0.00 C ATOM 191 CE LYS 12 -2.834 -1.626 5.013 1.00 0.00 C ATOM 192 NZ LYS 12 -3.832 -2.379 5.821 1.00 0.00 N ATOM 206 N LYS 13 3.016 2.159 6.370 1.00 0.00 N ATOM 207 CA LYS 13 3.874 2.842 7.331 1.00 0.00 C ATOM 208 C LYS 13 4.978 3.620 6.627 1.00 0.00 C ATOM 209 O LYS 13 5.425 4.659 7.111 1.00 0.00 O ATOM 210 CB LYS 13 4.480 1.840 8.314 1.00 0.00 C ATOM 211 CG LYS 13 3.464 1.146 9.211 1.00 0.00 C ATOM 212 CD LYS 13 4.145 0.196 10.185 1.00 0.00 C ATOM 213 CE LYS 13 3.131 -0.495 11.086 1.00 0.00 C ATOM 214 NZ LYS 13 3.779 -1.455 12.020 1.00 0.00 N ATOM 228 N LYS 14 5.417 3.109 5.481 1.00 0.00 N ATOM 229 CA LYS 14 6.538 3.698 4.759 1.00 0.00 C ATOM 230 C LYS 14 6.149 5.028 4.129 1.00 0.00 C ATOM 231 O LYS 14 6.932 5.978 4.126 1.00 0.00 O ATOM 232 CB LYS 14 7.049 2.736 3.684 1.00 0.00 C ATOM 233 CG LYS 14 7.802 1.529 4.228 1.00 0.00 C ATOM 234 CD LYS 14 8.255 0.608 3.104 1.00 0.00 C ATOM 235 CE LYS 14 9.142 -0.511 3.628 1.00 0.00 C ATOM 236 NZ LYS 14 9.520 -1.470 2.554 1.00 0.00 N ATOM 250 N PHE 15 4.935 5.091 3.594 1.00 0.00 N ATOM 251 CA PHE 15 4.468 6.279 2.889 1.00 0.00 C ATOM 252 C PHE 15 3.814 7.267 3.847 1.00 0.00 C ATOM 253 O PHE 15 2.866 6.925 4.554 1.00 0.00 O ATOM 254 CB PHE 15 3.476 5.894 1.789 1.00 0.00 C ATOM 255 CG PHE 15 4.118 5.253 0.592 1.00 0.00 C ATOM 256 CD1 PHE 15 4.367 3.889 0.568 1.00 0.00 C ATOM 257 CD2 PHE 15 4.473 6.012 -0.512 1.00 0.00 C ATOM 258 CE1 PHE 15 4.957 3.298 -0.533 1.00 0.00 C ATOM 259 CE2 PHE 15 5.062 5.424 -1.615 1.00 0.00 C ATOM 260 CZ PHE 15 5.305 4.066 -1.624 1.00 0.00 C ATOM 270 N LYS 16 4.326 8.493 3.865 1.00 0.00 N ATOM 271 CA LYS 16 3.780 9.537 4.724 1.00 0.00 C ATOM 272 C LYS 16 3.090 10.620 3.905 1.00 0.00 C ATOM 273 O LYS 16 3.444 10.860 2.751 1.00 0.00 O ATOM 274 CB LYS 16 4.885 10.153 5.585 1.00 0.00 C ATOM 275 CG LYS 16 5.644 9.151 6.445 1.00 0.00 C ATOM 276 CD LYS 16 4.740 8.533 7.501 1.00 0.00 C ATOM 277 CE LYS 16 5.529 7.655 8.461 1.00 0.00 C ATOM 278 NZ LYS 16 4.649 6.997 9.465 1.00 0.00 N ATOM 292 N ASN 17 2.103 11.273 4.509 1.00 0.00 N ATOM 293 CA ASN 17 1.376 12.347 3.844 1.00 0.00 C ATOM 294 C ASN 17 0.748 11.866 2.542 1.00 0.00 C ATOM 295 O ASN 17 0.735 12.586 1.545 1.00 0.00 O ATOM 296 CB ASN 17 2.289 13.533 3.590 1.00 0.00 C ATOM 297 CG ASN 17 2.832 14.128 4.860 1.00 0.00 C ATOM 298 OD1 ASN 17 2.103 14.284 5.847 1.00 0.00 O ATOM 299 ND2 ASN 17 4.097 14.462 4.854 1.00 0.00 N ATOM 306 N CYS 18 0.230 10.642 2.559 1.00 0.00 N ATOM 307 CA CYS 18 -0.454 10.084 1.399 1.00 0.00 C ATOM 308 C CYS 18 -1.810 9.506 1.784 1.00 0.00 C ATOM 309 O CYS 18 -2.086 9.277 2.962 1.00 0.00 O ATOM 310 CB CYS 18 0.394 8.992 0.749 1.00 0.00 C ATOM 311 SG CYS 18 2.085 9.503 0.358 1.00 0.00 S ATOM 316 N GLU 19 -2.653 9.272 0.784 1.00 0.00 N ATOM 317 CA GLU 19 -3.866 8.486 0.973 1.00 0.00 C ATOM 318 C GLU 19 -3.613 7.008 0.695 1.00 0.00 C ATOM 319 O GLU 19 -3.298 6.625 -0.431 1.00 0.00 O ATOM 320 CB GLU 19 -4.984 9.002 0.066 1.00 0.00 C ATOM 321 CG GLU 19 -6.307 8.264 0.216 1.00 0.00 C ATOM 322 CD GLU 19 -7.363 8.758 -0.734 1.00 0.00 C ATOM 323 OE1 GLU 19 -7.047 9.559 -1.580 1.00 0.00 O ATOM 324 OE2 GLU 19 -8.487 8.331 -0.614 1.00 0.00 O ATOM 331 N VAL 20 -3.753 6.184 1.728 1.00 0.00 N ATOM 332 CA VAL 20 -3.445 4.763 1.621 1.00 0.00 C ATOM 333 C VAL 20 -4.708 3.917 1.713 1.00 0.00 C ATOM 334 O VAL 20 -5.445 3.992 2.697 1.00 0.00 O ATOM 335 CB VAL 20 -2.466 4.343 2.734 1.00 0.00 C ATOM 336 CG1 VAL 20 -2.104 2.873 2.597 1.00 0.00 C ATOM 337 CG2 VAL 20 -1.220 5.213 2.683 1.00 0.00 C ATOM 347 N ARG 21 -4.952 3.113 0.684 1.00 0.00 N ATOM 348 CA ARG 21 -6.143 2.272 0.635 1.00 0.00 C ATOM 349 C ARG 21 -5.776 0.811 0.412 1.00 0.00 C ATOM 350 O ARG 21 -4.744 0.504 -0.186 1.00 0.00 O ATOM 351 CB ARG 21 -7.077 2.732 -0.474 1.00 0.00 C ATOM 352 CG ARG 21 -7.541 4.177 -0.362 1.00 0.00 C ATOM 353 CD ARG 21 -8.465 4.369 0.784 1.00 0.00 C ATOM 354 NE ARG 21 -8.947 5.739 0.869 1.00 0.00 N ATOM 355 CZ ARG 21 -9.776 6.201 1.824 1.00 0.00 C ATOM 356 NH1 ARG 21 -10.208 5.393 2.767 1.00 0.00 N ATOM 357 NH2 ARG 21 -10.158 7.466 1.814 1.00 0.00 N ATOM 371 N CYS 22 -6.625 -0.088 0.895 1.00 0.00 N ATOM 372 CA CYS 22 -6.431 -1.517 0.684 1.00 0.00 C ATOM 373 C CYS 22 -6.966 -1.950 -0.675 1.00 0.00 C ATOM 374 O CYS 22 -7.999 -1.461 -1.131 1.00 0.00 O ATOM 375 CB CYS 22 -7.130 -2.323 1.780 1.00 0.00 C ATOM 376 SG CYS 22 -6.432 -2.083 3.431 1.00 0.00 S ATOM 381 N ASP 23 -6.255 -2.870 -1.319 1.00 0.00 N ATOM 382 CA ASP 23 -6.748 -3.506 -2.535 1.00 0.00 C ATOM 383 C ASP 23 -7.078 -4.973 -2.294 1.00 0.00 C ATOM 384 O ASP 23 -6.183 -5.810 -2.176 1.00 0.00 O ATOM 385 CB ASP 23 -5.715 -3.388 -3.658 1.00 0.00 C ATOM 386 CG ASP 23 -6.178 -4.030 -4.959 1.00 0.00 C ATOM 387 OD1 ASP 23 -7.038 -4.876 -4.907 1.00 0.00 O ATOM 388 OD2 ASP 23 -5.666 -3.669 -5.992 1.00 0.00 O ATOM 393 N GLU 24 -8.369 -5.279 -2.222 1.00 0.00 N ATOM 394 CA GLU 24 -8.821 -6.600 -1.800 1.00 0.00 C ATOM 395 C GLU 24 -8.894 -7.559 -2.982 1.00 0.00 C ATOM 396 O GLU 24 -9.269 -8.722 -2.827 1.00 0.00 O ATOM 397 CB GLU 24 -10.190 -6.505 -1.122 1.00 0.00 C ATOM 398 CG GLU 24 -10.192 -5.721 0.182 1.00 0.00 C ATOM 399 CD GLU 24 -11.556 -5.623 0.803 1.00 0.00 C ATOM 400 OE1 GLU 24 -12.488 -6.135 0.229 1.00 0.00 O ATOM 401 OE2 GLU 24 -11.669 -5.035 1.853 1.00 0.00 O ATOM 408 N SER 25 -8.533 -7.067 -4.161 1.00 0.00 N ATOM 409 CA SER 25 -8.596 -7.868 -5.378 1.00 0.00 C ATOM 410 C SER 25 -7.206 -8.307 -5.821 1.00 0.00 C ATOM 411 O SER 25 -7.039 -9.381 -6.398 1.00 0.00 O ATOM 412 CB SER 25 -9.264 -7.080 -6.488 1.00 0.00 C ATOM 413 OG SER 25 -8.494 -5.966 -6.848 1.00 0.00 O ATOM 419 N ASN 26 -6.211 -7.470 -5.547 1.00 0.00 N ATOM 420 CA ASN 26 -4.827 -7.790 -5.876 1.00 0.00 C ATOM 421 C ASN 26 -4.009 -8.054 -4.619 1.00 0.00 C ATOM 422 O ASN 26 -2.790 -8.209 -4.682 1.00 0.00 O ATOM 423 CB ASN 26 -4.203 -6.676 -6.697 1.00 0.00 C ATOM 424 CG ASN 26 -4.819 -6.549 -8.062 1.00 0.00 C ATOM 425 OD1 ASN 26 -4.577 -7.379 -8.946 1.00 0.00 O ATOM 426 ND2 ASN 26 -5.612 -5.525 -8.252 1.00 0.00 N ATOM 433 N HIS 27 -4.686 -8.104 -3.477 1.00 0.00 N ATOM 434 CA HIS 27 -4.035 -8.422 -2.213 1.00 0.00 C ATOM 435 C HIS 27 -2.831 -7.522 -1.971 1.00 0.00 C ATOM 436 O HIS 27 -1.729 -8.000 -1.705 1.00 0.00 O ATOM 437 CB HIS 27 -3.595 -9.891 -2.185 1.00 0.00 C ATOM 438 CG HIS 27 -4.712 -10.857 -2.428 1.00 0.00 C ATOM 439 ND1 HIS 27 -5.718 -11.077 -1.510 1.00 0.00 N ATOM 440 CD2 HIS 27 -4.981 -11.663 -3.482 1.00 0.00 C ATOM 441 CE1 HIS 27 -6.559 -11.977 -1.991 1.00 0.00 C ATOM 442 NE2 HIS 27 -6.133 -12.348 -3.185 1.00 0.00 N ATOM 450 N CYS 28 -3.048 -6.214 -2.064 1.00 0.00 N ATOM 451 CA CYS 28 -1.962 -5.248 -1.968 1.00 0.00 C ATOM 452 C CYS 28 -2.461 -3.908 -1.442 1.00 0.00 C ATOM 453 O CYS 28 -3.629 -3.769 -1.080 1.00 0.00 O ATOM 454 CB CYS 28 -1.303 -5.041 -3.332 1.00 0.00 C ATOM 455 SG CYS 28 0.284 -4.174 -3.262 1.00 0.00 S ATOM 460 N VAL 29 -1.569 -2.924 -1.401 1.00 0.00 N ATOM 461 CA VAL 29 -1.912 -1.598 -0.901 1.00 0.00 C ATOM 462 C VAL 29 -1.704 -0.535 -1.971 1.00 0.00 C ATOM 463 O VAL 29 -0.664 -0.497 -2.628 1.00 0.00 O ATOM 464 CB VAL 29 -1.057 -1.255 0.333 1.00 0.00 C ATOM 465 CG1 VAL 29 -1.329 0.170 0.791 1.00 0.00 C ATOM 466 CG2 VAL 29 -1.341 -2.245 1.452 1.00 0.00 C ATOM 476 N GLU 30 -2.701 0.327 -2.143 1.00 0.00 N ATOM 477 CA GLU 30 -2.607 1.426 -3.096 1.00 0.00 C ATOM 478 C GLU 30 -2.384 2.755 -2.387 1.00 0.00 C ATOM 479 O GLU 30 -3.109 3.100 -1.452 1.00 0.00 O ATOM 480 CB GLU 30 -3.875 1.499 -3.951 1.00 0.00 C ATOM 481 CG GLU 30 -3.871 2.613 -4.987 1.00 0.00 C ATOM 482 CD GLU 30 -5.129 2.652 -5.810 1.00 0.00 C ATOM 483 OE1 GLU 30 -5.967 1.803 -5.621 1.00 0.00 O ATOM 484 OE2 GLU 30 -5.253 3.533 -6.628 1.00 0.00 O ATOM 491 N VAL 31 -1.378 3.498 -2.835 1.00 0.00 N ATOM 492 CA VAL 31 -1.023 4.765 -2.207 1.00 0.00 C ATOM 493 C VAL 31 -1.098 5.913 -3.206 1.00 0.00 C ATOM 494 O VAL 31 -0.502 5.855 -4.281 1.00 0.00 O ATOM 495 CB VAL 31 0.399 4.691 -1.622 1.00 0.00 C ATOM 496 CG1 VAL 31 0.775 6.013 -0.967 1.00 0.00 C ATOM 497 CG2 VAL 31 0.488 3.549 -0.621 1.00 0.00 C ATOM 507 N ARG 32 -1.837 6.957 -2.844 1.00 0.00 N ATOM 508 CA ARG 32 -1.931 8.154 -3.673 1.00 0.00 C ATOM 509 C ARG 32 -1.454 9.386 -2.916 1.00 0.00 C ATOM 510 O ARG 32 -2.167 9.917 -2.064 1.00 0.00 O ATOM 511 CB ARG 32 -3.363 8.371 -4.139 1.00 0.00 C ATOM 512 CG ARG 32 -3.950 7.229 -4.953 1.00 0.00 C ATOM 513 CD ARG 32 -5.368 7.483 -5.313 1.00 0.00 C ATOM 514 NE ARG 32 -5.966 6.349 -5.998 1.00 0.00 N ATOM 515 CZ ARG 32 -7.215 6.330 -6.502 1.00 0.00 C ATOM 516 NH1 ARG 32 -7.986 7.390 -6.388 1.00 0.00 N ATOM 517 NH2 ARG 32 -7.668 5.248 -7.109 1.00 0.00 N ATOM 531 N CYS 33 -0.245 9.838 -3.232 1.00 0.00 N ATOM 532 CA CYS 33 0.401 10.897 -2.466 1.00 0.00 C ATOM 533 C CYS 33 0.098 12.268 -3.058 1.00 0.00 C ATOM 534 O CYS 33 0.493 12.570 -4.185 1.00 0.00 O ATOM 535 CB CYS 33 1.915 10.687 -2.430 1.00 0.00 C ATOM 536 SG CYS 33 2.429 9.150 -1.626 1.00 0.00 S ATOM 541 N SER 34 -0.606 13.095 -2.293 1.00 0.00 N ATOM 542 CA SER 34 -1.022 14.410 -2.766 1.00 0.00 C ATOM 543 C SER 34 -1.408 15.317 -1.605 1.00 0.00 C ATOM 544 O SER 34 -1.150 14.997 -0.444 1.00 0.00 O ATOM 545 CB SER 34 -2.191 14.275 -3.723 1.00 0.00 C ATOM 546 OG SER 34 -2.447 15.488 -4.376 1.00 0.00 O ATOM 552 N ASP 35 -2.026 16.449 -1.924 1.00 0.00 N ATOM 553 CA ASP 35 -2.427 17.415 -0.909 1.00 0.00 C ATOM 554 C ASP 35 -3.707 16.978 -0.209 1.00 0.00 C ATOM 555 O ASP 35 -4.775 17.550 -0.433 1.00 0.00 O ATOM 556 CB ASP 35 -2.626 18.798 -1.534 1.00 0.00 C ATOM 557 CG ASP 35 -2.798 19.899 -0.495 1.00 0.00 C ATOM 558 OD1 ASP 35 -2.420 19.688 0.632 1.00 0.00 O ATOM 559 OD2 ASP 35 -3.306 20.939 -0.840 1.00 0.00 O ATOM 564 N THR 36 -3.595 15.963 0.639 1.00 0.00 N ATOM 565 CA THR 36 -4.764 15.349 1.259 1.00 0.00 C ATOM 566 C THR 36 -4.460 14.900 2.683 1.00 0.00 C ATOM 567 O THR 36 -3.306 14.645 3.031 1.00 0.00 O ATOM 568 CB THR 36 -5.264 14.150 0.434 1.00 0.00 C ATOM 569 OG1 THR 36 -6.485 13.654 0.998 1.00 0.00 O ATOM 570 CG2 THR 36 -4.225 13.038 0.425 1.00 0.00 C ATOM 578 N LYS 37 -5.500 14.804 3.503 1.00 0.00 N ATOM 579 CA LYS 37 -5.355 14.329 4.874 1.00 0.00 C ATOM 580 C LYS 37 -4.744 12.935 4.911 1.00 0.00 C ATOM 581 O LYS 37 -5.196 12.029 4.211 1.00 0.00 O ATOM 582 CB LYS 37 -6.708 14.331 5.588 1.00 0.00 C ATOM 583 CG LYS 37 -6.648 13.909 7.050 1.00 0.00 C ATOM 584 CD LYS 37 -8.017 13.996 7.707 1.00 0.00 C ATOM 585 CE LYS 37 -7.963 13.555 9.162 1.00 0.00 C ATOM 586 NZ LYS 37 -9.297 13.634 9.817 1.00 0.00 N ATOM 600 N TYR 38 -3.713 12.768 5.733 1.00 0.00 N ATOM 601 CA TYR 38 -3.039 11.482 5.866 1.00 0.00 C ATOM 602 C TYR 38 -4.020 10.384 6.258 1.00 0.00 C ATOM 603 O TYR 38 -4.620 10.430 7.332 1.00 0.00 O ATOM 604 CB TYR 38 -1.907 11.573 6.892 1.00 0.00 C ATOM 605 CG TYR 38 -1.058 10.324 6.977 1.00 0.00 C ATOM 606 CD1 TYR 38 -0.527 9.766 5.823 1.00 0.00 C ATOM 607 CD2 TYR 38 -0.812 9.737 8.208 1.00 0.00 C ATOM 608 CE1 TYR 38 0.249 8.626 5.902 1.00 0.00 C ATOM 609 CE2 TYR 38 -0.036 8.596 8.288 1.00 0.00 C ATOM 610 CZ TYR 38 0.492 8.041 7.140 1.00 0.00 C ATOM 611 OH TYR 38 1.265 6.905 7.218 1.00 0.00 O ATOM 621 N THR 39 -4.178 9.398 5.382 1.00 0.00 N ATOM 622 CA THR 39 -5.223 8.393 5.540 1.00 0.00 C ATOM 623 C THR 39 -4.651 6.984 5.443 1.00 0.00 C ATOM 624 O THR 39 -3.899 6.671 4.519 1.00 0.00 O ATOM 625 CB THR 39 -6.331 8.574 4.487 1.00 0.00 C ATOM 626 OG1 THR 39 -6.905 9.883 4.614 1.00 0.00 O ATOM 627 CG2 THR 39 -7.418 7.528 4.671 1.00 0.00 C ATOM 635 N LEU 40 -5.011 6.138 6.402 1.00 0.00 N ATOM 636 CA LEU 40 -4.531 4.761 6.429 1.00 0.00 C ATOM 637 C LEU 40 -5.688 3.772 6.365 1.00 0.00 C ATOM 638 O LEU 40 -6.786 4.057 6.841 1.00 0.00 O ATOM 639 CB LEU 40 -3.706 4.512 7.698 1.00 0.00 C ATOM 640 CG LEU 40 -2.398 5.307 7.809 1.00 0.00 C ATOM 641 CD1 LEU 40 -1.748 5.030 9.157 1.00 0.00 C ATOM 642 CD2 LEU 40 -1.471 4.920 6.666 1.00 0.00 C ATOM 654 N CYS 41 -5.433 2.610 5.774 1.00 0.00 N ATOM 655 CA CYS 41 -6.405 1.523 5.772 1.00 0.00 C ATOM 656 C CYS 41 -6.085 0.497 6.852 1.00 0.00 C ATOM 657 O CYS 41 -6.397 0.708 7.992 1.00 0.00 O ATOM 658 OXT CYS 41 -5.522 -0.523 6.564 1.00 0.00 O ATOM 659 CB CYS 41 -6.433 0.829 4.411 1.00 0.00 C ATOM 660 SG CYS 41 -7.535 -0.605 4.335 1.00 0.00 S TER END