####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS457_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 3.45 3.45 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 14 - 39 1.99 4.50 LCS_AVERAGE: 58.42 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 0.93 5.53 LCS_AVERAGE: 26.77 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 21 41 3 3 4 8 24 27 28 34 36 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT Q 2 Q 2 16 21 41 9 13 20 23 24 27 30 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT E 3 E 3 16 21 41 9 13 20 23 24 27 31 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT T 4 T 4 16 21 41 9 13 20 23 24 27 30 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT R 5 R 5 16 21 41 9 13 20 23 24 27 30 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT K 6 K 6 16 21 41 9 13 20 23 24 28 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT K 7 K 7 16 21 41 9 13 20 23 24 28 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT C 8 C 8 16 21 41 9 13 20 23 24 27 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT T 9 T 9 16 21 41 9 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT E 10 E 10 16 21 41 8 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT M 11 M 11 16 21 41 7 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT K 12 K 12 16 22 41 5 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT K 13 K 13 16 22 41 5 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT K 14 K 14 16 26 41 5 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT F 15 F 15 16 26 41 9 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT K 16 K 16 16 26 41 3 6 16 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT N 17 N 17 16 26 41 4 10 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT C 18 C 18 8 26 41 4 10 17 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT E 19 E 19 8 26 41 4 10 14 18 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT V 20 V 20 8 26 41 4 9 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT R 21 R 21 8 26 41 3 7 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT C 22 C 22 8 26 41 3 7 13 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT D 23 D 23 8 26 41 3 9 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT E 24 E 24 8 26 41 5 8 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT S 25 S 25 8 26 41 5 8 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT N 26 N 26 8 26 41 5 8 14 17 22 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT H 27 H 27 8 26 41 5 8 14 17 22 29 31 34 35 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT C 28 C 28 8 26 41 5 9 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT V 29 V 29 9 26 41 5 10 13 17 22 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT E 30 E 30 9 26 41 5 10 13 18 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT V 31 V 31 9 26 41 5 9 13 18 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT R 32 R 32 9 26 41 5 10 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT C 33 C 33 9 26 41 4 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT S 34 S 34 9 26 41 4 10 13 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT D 35 D 35 9 26 41 4 11 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT T 36 T 36 9 26 41 4 12 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT K 37 K 37 9 26 41 5 9 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT Y 38 Y 38 7 26 41 5 9 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT T 39 T 39 7 26 41 4 9 14 17 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 LCS_GDT L 40 L 40 5 24 41 4 7 9 11 18 21 24 27 31 33 36 40 40 40 40 40 40 40 41 41 LCS_GDT C 41 C 41 3 7 41 0 3 6 8 12 13 14 15 23 25 26 28 30 32 35 36 39 40 41 41 LCS_AVERAGE LCS_A: 61.73 ( 26.77 58.42 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 13 20 23 24 29 32 34 37 38 39 40 40 40 40 40 40 40 41 41 GDT PERCENT_AT 21.95 31.71 48.78 56.10 58.54 70.73 78.05 82.93 90.24 92.68 95.12 97.56 97.56 97.56 97.56 97.56 97.56 97.56 100.00 100.00 GDT RMS_LOCAL 0.30 0.61 1.00 1.20 1.50 2.09 2.32 2.44 2.77 2.85 2.95 3.08 3.08 3.08 3.08 3.08 3.08 3.08 3.45 3.45 GDT RMS_ALL_AT 6.18 6.22 5.04 4.95 4.57 4.01 3.60 3.63 3.48 3.50 3.48 3.46 3.46 3.46 3.46 3.46 3.46 3.46 3.45 3.45 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 7.803 0 0.142 0.779 11.177 0.000 0.000 11.177 LGA Q 2 Q 2 6.764 0 0.226 1.198 11.460 0.000 0.000 11.460 LGA E 3 E 3 5.743 0 0.083 1.132 12.272 0.455 0.202 10.255 LGA T 4 T 4 6.175 0 0.015 1.101 8.783 0.000 0.000 8.783 LGA R 5 R 5 5.760 0 0.025 0.292 8.446 0.909 0.331 8.446 LGA K 6 K 6 3.614 0 0.023 1.263 5.057 17.273 14.949 4.955 LGA K 7 K 7 3.288 0 0.034 0.658 6.071 21.364 10.303 6.071 LGA C 8 C 8 3.904 0 0.045 0.749 7.624 14.545 10.000 7.624 LGA T 9 T 9 2.950 0 0.030 0.109 3.598 30.455 24.156 3.598 LGA E 10 E 10 0.757 0 0.040 0.935 6.094 69.545 41.414 6.094 LGA M 11 M 11 2.143 0 0.011 1.302 3.397 44.545 37.500 2.460 LGA K 12 K 12 1.744 0 0.036 0.794 2.788 58.182 50.303 2.788 LGA K 13 K 13 0.349 0 0.103 0.603 1.642 90.909 88.485 1.642 LGA K 14 K 14 1.228 0 0.058 1.011 7.633 70.000 38.586 7.633 LGA F 15 F 15 0.303 0 0.092 0.142 0.920 100.000 91.736 0.861 LGA K 16 K 16 0.903 0 0.676 1.394 3.606 64.091 52.929 2.734 LGA N 17 N 17 2.780 0 0.306 0.592 4.862 42.273 25.000 4.862 LGA C 18 C 18 2.141 0 0.011 0.049 2.790 32.727 34.545 2.432 LGA E 19 E 19 2.259 0 0.102 0.732 3.989 35.909 29.899 3.375 LGA V 20 V 20 3.079 0 0.040 0.062 3.615 18.636 17.403 3.615 LGA R 21 R 21 3.104 0 0.261 1.355 8.472 15.000 7.603 8.155 LGA C 22 C 22 2.356 0 0.074 0.868 4.108 41.364 36.970 4.108 LGA D 23 D 23 2.333 0 0.264 1.348 6.027 35.909 23.409 3.834 LGA E 24 E 24 2.282 0 0.069 0.572 3.736 35.455 25.657 3.736 LGA S 25 S 25 2.017 0 0.052 0.081 3.272 33.636 41.818 1.246 LGA N 26 N 26 3.473 0 0.018 1.182 4.480 15.455 14.318 4.442 LGA H 27 H 27 3.867 0 0.045 0.196 5.890 11.364 4.727 5.600 LGA C 28 C 28 2.138 0 0.014 0.031 5.409 55.909 40.303 5.409 LGA V 29 V 29 3.105 0 0.176 1.128 6.395 39.545 22.597 6.395 LGA E 30 E 30 2.336 0 0.076 0.580 6.092 24.545 13.535 6.092 LGA V 31 V 31 2.403 0 0.043 0.099 4.129 63.636 42.597 3.720 LGA R 32 R 32 1.290 0 0.165 1.136 10.595 70.000 32.397 10.595 LGA C 33 C 33 1.039 0 0.542 0.599 4.126 50.909 46.970 2.501 LGA S 34 S 34 2.227 0 0.231 0.573 2.960 41.364 36.667 2.746 LGA D 35 D 35 2.372 0 0.212 1.047 3.870 33.182 32.273 3.870 LGA T 36 T 36 1.664 0 0.210 1.019 3.210 62.273 49.351 3.210 LGA K 37 K 37 2.241 0 0.043 1.181 4.062 27.273 30.707 1.417 LGA Y 38 Y 38 2.816 0 0.049 1.413 3.979 46.364 33.030 3.979 LGA T 39 T 39 2.523 0 0.016 0.085 5.465 16.364 16.104 3.729 LGA L 40 L 40 5.838 0 0.226 0.974 6.603 1.364 0.682 6.603 LGA C 41 C 41 9.663 0 0.107 0.820 12.513 0.000 0.000 10.928 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 3.450 3.501 4.323 34.945 27.304 14.324 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 34 2.44 67.073 69.279 1.336 LGA_LOCAL RMSD: 2.445 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.635 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 3.450 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.890134 * X + -0.410396 * Y + 0.198081 * Z + 2.775579 Y_new = 0.272608 * X + 0.131242 * Y + -0.953132 * Z + -12.655388 Z_new = 0.365166 * X + 0.902414 * Y + 0.228700 * Z + -6.837916 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.297186 -0.373811 1.322591 [DEG: 17.0275 -21.4178 75.7789 ] ZXZ: 0.204904 1.340054 0.384512 [DEG: 11.7401 76.7794 22.0309 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS457_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 34 2.44 69.279 3.45 REMARK ---------------------------------------------------------- MOLECULE T0955TS457_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 2.776 -12.655 -6.838 1.00 0.00 N ATOM 2 CA SER 1 4.073 -12.258 -6.306 1.00 0.00 C ATOM 3 C SER 1 3.981 -11.921 -4.823 1.00 0.00 C ATOM 4 O SER 1 3.509 -10.848 -4.448 1.00 0.00 O ATOM 5 CB SER 1 4.608 -11.064 -7.071 1.00 0.00 C ATOM 6 OG SER 1 5.802 -10.597 -6.504 1.00 0.00 O ATOM 14 N GLN 2 4.434 -12.845 -3.983 1.00 0.00 N ATOM 15 CA GLN 2 4.457 -12.624 -2.541 1.00 0.00 C ATOM 16 C GLN 2 5.367 -11.459 -2.177 1.00 0.00 C ATOM 17 O GLN 2 5.061 -10.679 -1.274 1.00 0.00 O ATOM 18 CB GLN 2 4.912 -13.892 -1.812 1.00 0.00 C ATOM 19 CG GLN 2 3.910 -15.032 -1.860 1.00 0.00 C ATOM 20 CD GLN 2 4.424 -16.283 -1.173 1.00 0.00 C ATOM 21 OE1 GLN 2 5.634 -16.473 -1.023 1.00 0.00 O ATOM 22 NE2 GLN 2 3.506 -17.145 -0.752 1.00 0.00 N ATOM 31 N GLU 3 6.487 -11.346 -2.883 1.00 0.00 N ATOM 32 CA GLU 3 7.427 -10.255 -2.658 1.00 0.00 C ATOM 33 C GLU 3 6.751 -8.901 -2.832 1.00 0.00 C ATOM 34 O GLU 3 6.903 -8.008 -1.999 1.00 0.00 O ATOM 35 CB GLU 3 8.616 -10.369 -3.615 1.00 0.00 C ATOM 36 CG GLU 3 9.646 -9.258 -3.473 1.00 0.00 C ATOM 37 CD GLU 3 10.807 -9.412 -4.415 1.00 0.00 C ATOM 38 OE1 GLU 3 10.858 -10.401 -5.108 1.00 0.00 O ATOM 39 OE2 GLU 3 11.645 -8.542 -4.443 1.00 0.00 O ATOM 46 N THR 4 6.004 -8.754 -3.921 1.00 0.00 N ATOM 47 CA THR 4 5.288 -7.514 -4.198 1.00 0.00 C ATOM 48 C THR 4 4.305 -7.185 -3.082 1.00 0.00 C ATOM 49 O THR 4 4.252 -6.053 -2.602 1.00 0.00 O ATOM 50 CB THR 4 4.539 -7.594 -5.541 1.00 0.00 C ATOM 51 OG1 THR 4 5.477 -7.818 -6.602 1.00 0.00 O ATOM 52 CG2 THR 4 3.778 -6.304 -5.805 1.00 0.00 C ATOM 60 N ARG 5 3.527 -8.181 -2.673 1.00 0.00 N ATOM 61 CA ARG 5 2.508 -7.987 -1.649 1.00 0.00 C ATOM 62 C ARG 5 3.128 -7.525 -0.336 1.00 0.00 C ATOM 63 O ARG 5 2.583 -6.660 0.348 1.00 0.00 O ATOM 64 CB ARG 5 1.731 -9.275 -1.415 1.00 0.00 C ATOM 65 CG ARG 5 0.801 -9.676 -2.549 1.00 0.00 C ATOM 66 CD ARG 5 0.088 -10.945 -2.252 1.00 0.00 C ATOM 67 NE ARG 5 -0.955 -11.221 -3.226 1.00 0.00 N ATOM 68 CZ ARG 5 -1.457 -12.445 -3.483 1.00 0.00 C ATOM 69 NH1 ARG 5 -1.001 -13.492 -2.832 1.00 0.00 N ATOM 70 NH2 ARG 5 -2.407 -12.592 -4.390 1.00 0.00 N ATOM 84 N LYS 6 4.270 -8.109 0.010 1.00 0.00 N ATOM 85 CA LYS 6 4.998 -7.716 1.211 1.00 0.00 C ATOM 86 C LYS 6 5.457 -6.266 1.126 1.00 0.00 C ATOM 87 O LYS 6 5.341 -5.511 2.092 1.00 0.00 O ATOM 88 CB LYS 6 6.198 -8.636 1.434 1.00 0.00 C ATOM 89 CG LYS 6 5.836 -10.047 1.881 1.00 0.00 C ATOM 90 CD LYS 6 7.073 -10.924 2.000 1.00 0.00 C ATOM 91 CE LYS 6 6.708 -12.347 2.396 1.00 0.00 C ATOM 92 NZ LYS 6 7.903 -13.230 2.464 1.00 0.00 N ATOM 106 N LYS 7 5.981 -5.883 -0.033 1.00 0.00 N ATOM 107 CA LYS 7 6.457 -4.522 -0.246 1.00 0.00 C ATOM 108 C LYS 7 5.310 -3.521 -0.186 1.00 0.00 C ATOM 109 O LYS 7 5.451 -2.433 0.371 1.00 0.00 O ATOM 110 CB LYS 7 7.181 -4.412 -1.589 1.00 0.00 C ATOM 111 CG LYS 7 8.547 -5.084 -1.624 1.00 0.00 C ATOM 112 CD LYS 7 9.188 -4.962 -2.998 1.00 0.00 C ATOM 113 CE LYS 7 10.583 -5.567 -3.016 1.00 0.00 C ATOM 114 NZ LYS 7 11.194 -5.520 -4.372 1.00 0.00 N ATOM 128 N CYS 8 4.173 -3.897 -0.762 1.00 0.00 N ATOM 129 CA CYS 8 3.008 -3.022 -0.799 1.00 0.00 C ATOM 130 C CYS 8 2.625 -2.554 0.599 1.00 0.00 C ATOM 131 O CYS 8 2.279 -1.390 0.802 1.00 0.00 O ATOM 132 CB CYS 8 1.816 -3.739 -1.435 1.00 0.00 C ATOM 133 SG CYS 8 1.975 -3.996 -3.219 1.00 0.00 S ATOM 138 N THR 9 2.688 -3.468 1.561 1.00 0.00 N ATOM 139 CA THR 9 2.385 -3.142 2.950 1.00 0.00 C ATOM 140 C THR 9 3.538 -2.391 3.604 1.00 0.00 C ATOM 141 O THR 9 3.339 -1.347 4.224 1.00 0.00 O ATOM 142 CB THR 9 2.068 -4.412 3.761 1.00 0.00 C ATOM 143 OG1 THR 9 0.897 -5.043 3.227 1.00 0.00 O ATOM 144 CG2 THR 9 1.831 -4.066 5.223 1.00 0.00 C ATOM 152 N GLU 10 4.745 -2.931 3.462 1.00 0.00 N ATOM 153 CA GLU 10 5.902 -2.420 4.187 1.00 0.00 C ATOM 154 C GLU 10 6.215 -0.985 3.785 1.00 0.00 C ATOM 155 O GLU 10 6.623 -0.173 4.616 1.00 0.00 O ATOM 156 CB GLU 10 7.123 -3.308 3.936 1.00 0.00 C ATOM 157 CG GLU 10 7.068 -4.662 4.628 1.00 0.00 C ATOM 158 CD GLU 10 7.114 -4.555 6.127 1.00 0.00 C ATOM 159 OE1 GLU 10 8.006 -3.917 6.631 1.00 0.00 O ATOM 160 OE2 GLU 10 6.256 -5.114 6.768 1.00 0.00 O ATOM 167 N MET 11 6.020 -0.677 2.508 1.00 0.00 N ATOM 168 CA MET 11 6.290 0.659 1.991 1.00 0.00 C ATOM 169 C MET 11 5.417 1.702 2.676 1.00 0.00 C ATOM 170 O MET 11 5.800 2.866 2.793 1.00 0.00 O ATOM 171 CB MET 11 6.076 0.693 0.479 1.00 0.00 C ATOM 172 CG MET 11 7.190 0.045 -0.330 1.00 0.00 C ATOM 173 SD MET 11 7.020 0.332 -2.104 1.00 0.00 S ATOM 174 CE MET 11 5.563 -0.644 -2.466 1.00 0.00 C ATOM 184 N LYS 12 4.242 1.277 3.127 1.00 0.00 N ATOM 185 CA LYS 12 3.298 2.180 3.774 1.00 0.00 C ATOM 186 C LYS 12 3.905 2.811 5.021 1.00 0.00 C ATOM 187 O LYS 12 3.510 3.902 5.432 1.00 0.00 O ATOM 188 CB LYS 12 2.008 1.440 4.134 1.00 0.00 C ATOM 189 CG LYS 12 0.909 2.331 4.699 1.00 0.00 C ATOM 190 CD LYS 12 -0.423 1.597 4.751 1.00 0.00 C ATOM 191 CE LYS 12 -0.398 0.474 5.778 1.00 0.00 C ATOM 192 NZ LYS 12 -1.641 -0.344 5.737 1.00 0.00 N ATOM 206 N LYS 13 4.867 2.118 5.619 1.00 0.00 N ATOM 207 CA LYS 13 5.527 2.607 6.825 1.00 0.00 C ATOM 208 C LYS 13 6.252 3.921 6.562 1.00 0.00 C ATOM 209 O LYS 13 6.452 4.722 7.474 1.00 0.00 O ATOM 210 CB LYS 13 6.509 1.562 7.358 1.00 0.00 C ATOM 211 CG LYS 13 5.852 0.306 7.913 1.00 0.00 C ATOM 212 CD LYS 13 6.891 -0.724 8.329 1.00 0.00 C ATOM 213 CE LYS 13 6.235 -1.975 8.895 1.00 0.00 C ATOM 214 NZ LYS 13 7.232 -3.037 9.200 1.00 0.00 N ATOM 228 N LYS 14 6.642 4.136 5.310 1.00 0.00 N ATOM 229 CA LYS 14 7.242 5.400 4.901 1.00 0.00 C ATOM 230 C LYS 14 6.193 6.349 4.335 1.00 0.00 C ATOM 231 O LYS 14 6.168 7.533 4.671 1.00 0.00 O ATOM 232 CB LYS 14 8.346 5.160 3.870 1.00 0.00 C ATOM 233 CG LYS 14 9.009 6.429 3.351 1.00 0.00 C ATOM 234 CD LYS 14 10.142 6.107 2.388 1.00 0.00 C ATOM 235 CE LYS 14 10.788 7.375 1.849 1.00 0.00 C ATOM 236 NZ LYS 14 11.907 7.075 0.915 1.00 0.00 N ATOM 250 N PHE 15 5.330 5.823 3.472 1.00 0.00 N ATOM 251 CA PHE 15 4.353 6.644 2.768 1.00 0.00 C ATOM 252 C PHE 15 3.092 6.836 3.601 1.00 0.00 C ATOM 253 O PHE 15 2.038 6.282 3.285 1.00 0.00 O ATOM 254 CB PHE 15 3.992 6.011 1.424 1.00 0.00 C ATOM 255 CG PHE 15 5.162 5.853 0.495 1.00 0.00 C ATOM 256 CD1 PHE 15 5.598 4.593 0.113 1.00 0.00 C ATOM 257 CD2 PHE 15 5.828 6.964 0.000 1.00 0.00 C ATOM 258 CE1 PHE 15 6.675 4.447 -0.741 1.00 0.00 C ATOM 259 CE2 PHE 15 6.903 6.821 -0.855 1.00 0.00 C ATOM 260 CZ PHE 15 7.327 5.560 -1.226 1.00 0.00 C ATOM 270 N LYS 16 3.205 7.622 4.666 1.00 0.00 N ATOM 271 CA LYS 16 2.105 7.802 5.605 1.00 0.00 C ATOM 272 C LYS 16 1.108 8.835 5.096 1.00 0.00 C ATOM 273 O LYS 16 1.421 9.628 4.207 1.00 0.00 O ATOM 274 CB LYS 16 2.636 8.216 6.978 1.00 0.00 C ATOM 275 CG LYS 16 3.526 7.177 7.649 1.00 0.00 C ATOM 276 CD LYS 16 3.992 7.649 9.018 1.00 0.00 C ATOM 277 CE LYS 16 4.923 6.636 9.666 1.00 0.00 C ATOM 278 NZ LYS 16 5.366 7.071 11.019 1.00 0.00 N ATOM 292 N ASN 17 -0.093 8.821 5.663 1.00 0.00 N ATOM 293 CA ASN 17 -1.121 9.790 5.304 1.00 0.00 C ATOM 294 C ASN 17 -1.489 9.682 3.830 1.00 0.00 C ATOM 295 O ASN 17 -1.807 10.681 3.185 1.00 0.00 O ATOM 296 CB ASN 17 -0.669 11.199 5.639 1.00 0.00 C ATOM 297 CG ASN 17 -0.359 11.374 7.101 1.00 0.00 C ATOM 298 OD1 ASN 17 -1.031 10.798 7.964 1.00 0.00 O ATOM 299 ND2 ASN 17 0.646 12.157 7.395 1.00 0.00 N ATOM 306 N CYS 18 -1.445 8.463 3.302 1.00 0.00 N ATOM 307 CA CYS 18 -1.883 8.204 1.936 1.00 0.00 C ATOM 308 C CYS 18 -3.270 7.576 1.913 1.00 0.00 C ATOM 309 O CYS 18 -3.701 6.962 2.889 1.00 0.00 O ATOM 310 CB CYS 18 -0.898 7.278 1.222 1.00 0.00 C ATOM 311 SG CYS 18 0.755 7.982 1.007 1.00 0.00 S ATOM 316 N GLU 19 -3.967 7.732 0.792 1.00 0.00 N ATOM 317 CA GLU 19 -5.342 7.264 0.673 1.00 0.00 C ATOM 318 C GLU 19 -5.391 5.776 0.354 1.00 0.00 C ATOM 319 O GLU 19 -5.830 5.376 -0.724 1.00 0.00 O ATOM 320 CB GLU 19 -6.082 8.053 -0.410 1.00 0.00 C ATOM 321 CG GLU 19 -6.207 9.543 -0.129 1.00 0.00 C ATOM 322 CD GLU 19 -6.925 10.286 -1.221 1.00 0.00 C ATOM 323 OE1 GLU 19 -7.216 9.688 -2.229 1.00 0.00 O ATOM 324 OE2 GLU 19 -7.183 11.454 -1.047 1.00 0.00 O ATOM 331 N VAL 20 -4.940 4.958 1.299 1.00 0.00 N ATOM 332 CA VAL 20 -4.807 3.524 1.073 1.00 0.00 C ATOM 333 C VAL 20 -6.144 2.814 1.242 1.00 0.00 C ATOM 334 O VAL 20 -6.773 2.896 2.297 1.00 0.00 O ATOM 335 CB VAL 20 -3.781 2.921 2.051 1.00 0.00 C ATOM 336 CG1 VAL 20 -3.677 1.416 1.852 1.00 0.00 C ATOM 337 CG2 VAL 20 -2.427 3.587 1.858 1.00 0.00 C ATOM 347 N ARG 21 -6.573 2.115 0.195 1.00 0.00 N ATOM 348 CA ARG 21 -7.809 1.343 0.245 1.00 0.00 C ATOM 349 C ARG 21 -7.610 -0.050 -0.338 1.00 0.00 C ATOM 350 O ARG 21 -8.058 -0.338 -1.447 1.00 0.00 O ATOM 351 CB ARG 21 -8.917 2.055 -0.516 1.00 0.00 C ATOM 352 CG ARG 21 -9.335 3.394 0.068 1.00 0.00 C ATOM 353 CD ARG 21 -10.046 3.232 1.362 1.00 0.00 C ATOM 354 NE ARG 21 -10.519 4.503 1.885 1.00 0.00 N ATOM 355 CZ ARG 21 -9.804 5.312 2.693 1.00 0.00 C ATOM 356 NH1 ARG 21 -8.590 4.967 3.059 1.00 0.00 N ATOM 357 NH2 ARG 21 -10.324 6.451 3.116 1.00 0.00 N ATOM 371 N CYS 22 -6.937 -0.912 0.416 1.00 0.00 N ATOM 372 CA CYS 22 -6.373 -2.137 -0.137 1.00 0.00 C ATOM 373 C CYS 22 -7.459 -3.173 -0.400 1.00 0.00 C ATOM 374 O CYS 22 -8.307 -3.430 0.454 1.00 0.00 O ATOM 375 CB CYS 22 -5.333 -2.729 0.815 1.00 0.00 C ATOM 376 SG CYS 22 -4.492 -4.195 0.171 1.00 0.00 S ATOM 381 N ASP 23 -7.428 -3.766 -1.590 1.00 0.00 N ATOM 382 CA ASP 23 -8.262 -4.923 -1.891 1.00 0.00 C ATOM 383 C ASP 23 -7.516 -6.224 -1.618 1.00 0.00 C ATOM 384 O ASP 23 -6.545 -6.549 -2.302 1.00 0.00 O ATOM 385 CB ASP 23 -8.722 -4.888 -3.350 1.00 0.00 C ATOM 386 CG ASP 23 -9.680 -6.020 -3.697 1.00 0.00 C ATOM 387 OD1 ASP 23 -9.694 -6.998 -2.987 1.00 0.00 O ATOM 388 OD2 ASP 23 -10.387 -5.896 -4.667 1.00 0.00 O ATOM 393 N GLU 24 -7.976 -6.964 -0.616 1.00 0.00 N ATOM 394 CA GLU 24 -7.256 -8.138 -0.137 1.00 0.00 C ATOM 395 C GLU 24 -7.134 -9.193 -1.229 1.00 0.00 C ATOM 396 O GLU 24 -6.333 -10.122 -1.121 1.00 0.00 O ATOM 397 CB GLU 24 -7.958 -8.733 1.085 1.00 0.00 C ATOM 398 CG GLU 24 -7.893 -7.864 2.333 1.00 0.00 C ATOM 399 CD GLU 24 -8.579 -8.486 3.516 1.00 0.00 C ATOM 400 OE1 GLU 24 -9.147 -9.541 3.363 1.00 0.00 O ATOM 401 OE2 GLU 24 -8.536 -7.907 4.577 1.00 0.00 O ATOM 408 N SER 25 -7.933 -9.045 -2.280 1.00 0.00 N ATOM 409 CA SER 25 -7.889 -9.964 -3.411 1.00 0.00 C ATOM 410 C SER 25 -6.488 -10.042 -4.004 1.00 0.00 C ATOM 411 O SER 25 -6.053 -11.100 -4.458 1.00 0.00 O ATOM 412 CB SER 25 -8.875 -9.528 -4.477 1.00 0.00 C ATOM 413 OG SER 25 -10.186 -9.530 -3.978 1.00 0.00 O ATOM 419 N ASN 26 -5.786 -8.914 -3.998 1.00 0.00 N ATOM 420 CA ASN 26 -4.435 -8.850 -4.543 1.00 0.00 C ATOM 421 C ASN 26 -3.441 -8.360 -3.497 1.00 0.00 C ATOM 422 O ASN 26 -2.235 -8.563 -3.631 1.00 0.00 O ATOM 423 CB ASN 26 -4.396 -7.963 -5.773 1.00 0.00 C ATOM 424 CG ASN 26 -5.210 -8.516 -6.910 1.00 0.00 C ATOM 425 OD1 ASN 26 -4.791 -9.463 -7.586 1.00 0.00 O ATOM 426 ND2 ASN 26 -6.365 -7.943 -7.135 1.00 0.00 N ATOM 433 N HIS 27 -3.956 -7.715 -2.456 1.00 0.00 N ATOM 434 CA HIS 27 -3.110 -7.128 -1.423 1.00 0.00 C ATOM 435 C HIS 27 -2.195 -6.058 -2.005 1.00 0.00 C ATOM 436 O HIS 27 -1.142 -5.755 -1.443 1.00 0.00 O ATOM 437 CB HIS 27 -2.269 -8.207 -0.734 1.00 0.00 C ATOM 438 CG HIS 27 -3.083 -9.216 0.015 1.00 0.00 C ATOM 439 ND1 HIS 27 -3.745 -8.916 1.188 1.00 0.00 N ATOM 440 CD2 HIS 27 -3.342 -10.521 -0.241 1.00 0.00 C ATOM 441 CE1 HIS 27 -4.375 -9.994 1.620 1.00 0.00 C ATOM 442 NE2 HIS 27 -4.148 -10.980 0.772 1.00 0.00 N ATOM 450 N CYS 28 -2.602 -5.487 -3.133 1.00 0.00 N ATOM 451 CA CYS 28 -1.919 -4.330 -3.697 1.00 0.00 C ATOM 452 C CYS 28 -2.880 -3.454 -4.491 1.00 0.00 C ATOM 453 O CYS 28 -3.575 -3.933 -5.386 1.00 0.00 O ATOM 454 CB CYS 28 -0.772 -4.771 -4.606 1.00 0.00 C ATOM 455 SG CYS 28 0.613 -5.535 -3.728 1.00 0.00 S ATOM 460 N VAL 29 -2.916 -2.169 -4.155 1.00 0.00 N ATOM 461 CA VAL 29 -3.723 -1.206 -4.895 1.00 0.00 C ATOM 462 C VAL 29 -2.930 0.057 -5.202 1.00 0.00 C ATOM 463 O VAL 29 -1.946 0.362 -4.530 1.00 0.00 O ATOM 464 CB VAL 29 -4.983 -0.835 -4.091 1.00 0.00 C ATOM 465 CG1 VAL 29 -5.862 -2.060 -3.883 1.00 0.00 C ATOM 466 CG2 VAL 29 -4.584 -0.224 -2.757 1.00 0.00 C ATOM 476 N GLU 30 -3.365 0.789 -6.223 1.00 0.00 N ATOM 477 CA GLU 30 -2.785 2.091 -6.534 1.00 0.00 C ATOM 478 C GLU 30 -3.287 3.160 -5.573 1.00 0.00 C ATOM 479 O GLU 30 -4.492 3.315 -5.375 1.00 0.00 O ATOM 480 CB GLU 30 -3.113 2.490 -7.974 1.00 0.00 C ATOM 481 CG GLU 30 -2.465 1.612 -9.035 1.00 0.00 C ATOM 482 CD GLU 30 -2.782 2.054 -10.435 1.00 0.00 C ATOM 483 OE1 GLU 30 -3.517 3.001 -10.587 1.00 0.00 O ATOM 484 OE2 GLU 30 -2.289 1.445 -11.356 1.00 0.00 O ATOM 491 N VAL 31 -2.355 3.898 -4.977 1.00 0.00 N ATOM 492 CA VAL 31 -2.691 4.862 -3.937 1.00 0.00 C ATOM 493 C VAL 31 -2.095 6.231 -4.243 1.00 0.00 C ATOM 494 O VAL 31 -0.938 6.338 -4.648 1.00 0.00 O ATOM 495 CB VAL 31 -2.176 4.375 -2.570 1.00 0.00 C ATOM 496 CG1 VAL 31 -2.443 5.421 -1.497 1.00 0.00 C ATOM 497 CG2 VAL 31 -2.835 3.053 -2.210 1.00 0.00 C ATOM 507 N ARG 32 -2.893 7.275 -4.047 1.00 0.00 N ATOM 508 CA ARG 32 -2.404 8.645 -4.154 1.00 0.00 C ATOM 509 C ARG 32 -1.735 9.094 -2.861 1.00 0.00 C ATOM 510 O ARG 32 -2.326 9.011 -1.785 1.00 0.00 O ATOM 511 CB ARG 32 -3.543 9.595 -4.490 1.00 0.00 C ATOM 512 CG ARG 32 -3.139 11.055 -4.628 1.00 0.00 C ATOM 513 CD ARG 32 -4.296 11.914 -4.981 1.00 0.00 C ATOM 514 NE ARG 32 -3.922 13.315 -5.079 1.00 0.00 N ATOM 515 CZ ARG 32 -4.765 14.311 -5.416 1.00 0.00 C ATOM 516 NH1 ARG 32 -6.025 14.044 -5.682 1.00 0.00 N ATOM 517 NH2 ARG 32 -4.325 15.556 -5.479 1.00 0.00 N ATOM 531 N CYS 33 -0.500 9.570 -2.975 1.00 0.00 N ATOM 532 CA CYS 33 0.203 10.155 -1.839 1.00 0.00 C ATOM 533 C CYS 33 0.574 11.608 -2.110 1.00 0.00 C ATOM 534 O CYS 33 1.630 11.895 -2.673 1.00 0.00 O ATOM 535 CB CYS 33 1.471 9.361 -1.524 1.00 0.00 C ATOM 536 SG CYS 33 1.162 7.672 -0.957 1.00 0.00 S ATOM 541 N SER 34 -0.303 12.522 -1.707 1.00 0.00 N ATOM 542 CA SER 34 -0.194 13.919 -2.112 1.00 0.00 C ATOM 543 C SER 34 -0.163 14.051 -3.629 1.00 0.00 C ATOM 544 O SER 34 -1.138 13.735 -4.310 1.00 0.00 O ATOM 545 CB SER 34 1.054 14.540 -1.515 1.00 0.00 C ATOM 546 OG SER 34 1.039 15.933 -1.659 1.00 0.00 O ATOM 552 N ASP 35 0.963 14.522 -4.154 1.00 0.00 N ATOM 553 CA ASP 35 1.111 14.732 -5.588 1.00 0.00 C ATOM 554 C ASP 35 1.885 13.591 -6.235 1.00 0.00 C ATOM 555 O ASP 35 2.294 13.684 -7.393 1.00 0.00 O ATOM 556 CB ASP 35 1.822 16.060 -5.866 1.00 0.00 C ATOM 557 CG ASP 35 1.013 17.270 -5.417 1.00 0.00 C ATOM 558 OD1 ASP 35 -0.177 17.274 -5.624 1.00 0.00 O ATOM 559 OD2 ASP 35 1.593 18.177 -4.871 1.00 0.00 O ATOM 564 N THR 36 2.081 12.515 -5.483 1.00 0.00 N ATOM 565 CA THR 36 2.774 11.338 -5.994 1.00 0.00 C ATOM 566 C THR 36 1.869 10.113 -5.976 1.00 0.00 C ATOM 567 O THR 36 0.740 10.171 -5.491 1.00 0.00 O ATOM 568 CB THR 36 4.050 11.050 -5.180 1.00 0.00 C ATOM 569 OG1 THR 36 3.696 10.729 -3.829 1.00 0.00 O ATOM 570 CG2 THR 36 4.971 12.261 -5.186 1.00 0.00 C ATOM 578 N LYS 37 2.372 9.004 -6.508 1.00 0.00 N ATOM 579 CA LYS 37 1.575 7.791 -6.646 1.00 0.00 C ATOM 580 C LYS 37 2.416 6.548 -6.391 1.00 0.00 C ATOM 581 O LYS 37 3.505 6.397 -6.946 1.00 0.00 O ATOM 582 CB LYS 37 0.942 7.721 -8.038 1.00 0.00 C ATOM 583 CG LYS 37 -0.002 6.544 -8.241 1.00 0.00 C ATOM 584 CD LYS 37 -0.651 6.588 -9.616 1.00 0.00 C ATOM 585 CE LYS 37 -1.636 5.442 -9.801 1.00 0.00 C ATOM 586 NZ LYS 37 -2.239 5.441 -11.162 1.00 0.00 N ATOM 600 N TYR 38 1.906 5.657 -5.547 1.00 0.00 N ATOM 601 CA TYR 38 2.586 4.402 -5.251 1.00 0.00 C ATOM 602 C TYR 38 1.600 3.244 -5.175 1.00 0.00 C ATOM 603 O TYR 38 0.390 3.452 -5.077 1.00 0.00 O ATOM 604 CB TYR 38 3.374 4.516 -3.945 1.00 0.00 C ATOM 605 CG TYR 38 4.399 5.628 -3.944 1.00 0.00 C ATOM 606 CD1 TYR 38 4.076 6.869 -3.417 1.00 0.00 C ATOM 607 CD2 TYR 38 5.662 5.406 -4.471 1.00 0.00 C ATOM 608 CE1 TYR 38 5.012 7.885 -3.416 1.00 0.00 C ATOM 609 CE2 TYR 38 6.600 6.422 -4.470 1.00 0.00 C ATOM 610 CZ TYR 38 6.278 7.657 -3.945 1.00 0.00 C ATOM 611 OH TYR 38 7.210 8.668 -3.945 1.00 0.00 O ATOM 621 N THR 39 2.123 2.024 -5.222 1.00 0.00 N ATOM 622 CA THR 39 1.311 0.833 -5.000 1.00 0.00 C ATOM 623 C THR 39 1.477 0.310 -3.580 1.00 0.00 C ATOM 624 O THR 39 2.536 -0.201 -3.215 1.00 0.00 O ATOM 625 CB THR 39 1.669 -0.277 -6.005 1.00 0.00 C ATOM 626 OG1 THR 39 1.449 0.195 -7.341 1.00 0.00 O ATOM 627 CG2 THR 39 0.817 -1.512 -5.762 1.00 0.00 C ATOM 635 N LEU 40 0.424 0.439 -2.780 1.00 0.00 N ATOM 636 CA LEU 40 0.517 0.198 -1.345 1.00 0.00 C ATOM 637 C LEU 40 -0.581 -0.746 -0.872 1.00 0.00 C ATOM 638 O LEU 40 -1.552 -0.992 -1.588 1.00 0.00 O ATOM 639 CB LEU 40 0.424 1.524 -0.579 1.00 0.00 C ATOM 640 CG LEU 40 1.462 2.587 -0.961 1.00 0.00 C ATOM 641 CD1 LEU 40 1.137 3.893 -0.249 1.00 0.00 C ATOM 642 CD2 LEU 40 2.854 2.095 -0.593 1.00 0.00 C ATOM 654 N CYS 41 -0.422 -1.272 0.337 1.00 0.00 N ATOM 655 CA CYS 41 -1.487 -2.020 0.994 1.00 0.00 C ATOM 656 C CYS 41 -1.310 -2.016 2.507 1.00 0.00 C ATOM 657 O CYS 41 -1.650 -1.061 3.149 1.00 0.00 O ATOM 658 OXT CYS 41 -0.831 -2.969 3.057 1.00 0.00 O ATOM 659 CB CYS 41 -1.520 -3.464 0.493 1.00 0.00 C ATOM 660 SG CYS 41 -2.806 -4.481 1.255 1.00 0.00 S TER END