####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS457_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 1 - 40 4.63 5.03 LCS_AVERAGE: 96.55 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 1 - 34 1.30 5.83 LONGEST_CONTINUOUS_SEGMENT: 34 2 - 35 1.97 5.55 LCS_AVERAGE: 74.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 2 - 33 0.85 5.98 LCS_AVERAGE: 63.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 34 40 3 3 4 12 27 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT Q 2 Q 2 32 34 40 10 27 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT E 3 E 3 32 34 40 13 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT T 4 T 4 32 34 40 17 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT R 5 R 5 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT K 6 K 6 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT K 7 K 7 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT C 8 C 8 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT T 9 T 9 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT E 10 E 10 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT M 11 M 11 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT K 12 K 12 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT K 13 K 13 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT K 14 K 14 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT F 15 F 15 32 34 40 4 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT K 16 K 16 32 34 40 3 4 4 13 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT N 17 N 17 32 34 40 3 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT C 18 C 18 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT E 19 E 19 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT V 20 V 20 32 34 40 9 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT R 21 R 21 32 34 40 9 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT C 22 C 22 32 34 40 9 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT D 23 D 23 32 34 40 9 25 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT E 24 E 24 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT S 25 S 25 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT N 26 N 26 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT H 27 H 27 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT C 28 C 28 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT V 29 V 29 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT E 30 E 30 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT V 31 V 31 32 34 40 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT R 32 R 32 32 34 40 3 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT C 33 C 33 32 34 40 3 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT S 34 S 34 4 34 40 3 4 20 28 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT D 35 D 35 4 34 40 3 4 6 11 14 20 26 29 32 34 35 35 35 35 36 37 37 38 39 41 LCS_GDT T 36 T 36 6 9 40 6 6 6 8 9 11 12 14 16 17 19 31 32 35 36 37 37 38 39 41 LCS_GDT K 37 K 37 6 9 40 6 6 6 8 9 11 12 14 16 17 19 20 21 24 36 37 37 38 39 41 LCS_GDT Y 38 Y 38 6 9 40 6 6 6 8 9 11 12 14 16 17 19 20 21 24 25 25 28 30 39 41 LCS_GDT T 39 T 39 6 9 40 6 6 6 8 9 11 12 14 16 17 19 20 21 24 25 34 36 38 39 41 LCS_GDT L 40 L 40 6 9 40 6 6 6 8 9 11 12 14 16 17 19 20 21 24 25 25 28 37 39 41 LCS_GDT C 41 C 41 6 9 23 6 6 6 8 9 11 12 14 16 17 19 20 21 23 25 25 26 30 39 41 LCS_AVERAGE LCS_A: 78.09 ( 63.71 74.00 96.55 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 20 28 31 31 32 32 34 34 34 34 35 35 35 35 36 37 37 38 39 41 GDT PERCENT_AT 48.78 68.29 75.61 75.61 78.05 78.05 82.93 82.93 82.93 82.93 85.37 85.37 85.37 85.37 87.80 90.24 90.24 92.68 95.12 100.00 GDT RMS_LOCAL 0.39 0.58 0.67 0.67 0.95 0.85 1.30 1.30 1.30 1.30 2.09 2.09 2.09 2.09 2.86 3.38 3.38 3.83 4.24 5.01 GDT RMS_ALL_AT 5.84 5.92 5.94 5.94 5.80 5.98 5.83 5.83 5.83 5.83 5.54 5.54 5.54 5.54 5.33 5.21 5.21 5.13 5.07 5.01 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.047 0 0.175 0.778 6.501 6.364 4.242 6.164 LGA Q 2 Q 2 1.221 0 0.229 1.198 5.098 78.182 48.485 5.098 LGA E 3 E 3 0.593 0 0.081 1.135 4.754 81.818 61.616 1.873 LGA T 4 T 4 0.492 0 0.020 1.144 2.398 95.455 77.143 2.398 LGA R 5 R 5 0.547 0 0.017 0.380 3.097 86.364 61.983 3.097 LGA K 6 K 6 0.578 0 0.030 1.256 6.012 81.818 50.909 5.965 LGA K 7 K 7 0.447 0 0.027 0.659 2.168 95.455 73.333 2.158 LGA C 8 C 8 0.352 0 0.026 0.029 0.493 100.000 100.000 0.493 LGA T 9 T 9 0.720 0 0.014 0.093 1.210 81.818 79.481 0.910 LGA E 10 E 10 0.574 0 0.037 0.520 1.840 90.909 76.970 1.347 LGA M 11 M 11 0.320 0 0.049 0.989 4.150 95.455 74.545 4.150 LGA K 12 K 12 0.525 0 0.047 0.626 2.380 90.909 66.465 2.346 LGA K 13 K 13 0.345 0 0.087 0.586 1.817 100.000 82.828 1.009 LGA K 14 K 14 0.439 0 0.076 0.989 5.276 95.455 66.061 5.276 LGA F 15 F 15 0.681 0 0.414 0.456 2.407 71.364 69.752 1.690 LGA K 16 K 16 3.062 0 0.672 1.357 5.400 21.364 15.354 5.400 LGA N 17 N 17 1.336 0 0.332 0.574 3.456 69.545 52.955 2.225 LGA C 18 C 18 0.560 0 0.012 0.048 0.932 81.818 81.818 0.615 LGA E 19 E 19 0.234 0 0.184 0.480 1.056 95.455 92.121 0.538 LGA V 20 V 20 0.846 0 0.087 0.108 1.333 77.727 79.481 0.953 LGA R 21 R 21 1.037 0 0.013 1.096 4.458 77.727 48.099 4.458 LGA C 22 C 22 1.154 0 0.128 0.921 4.220 65.455 55.455 4.220 LGA D 23 D 23 1.366 0 0.317 1.165 4.233 50.000 39.545 3.167 LGA E 24 E 24 0.226 0 0.133 0.632 4.284 95.455 60.202 4.284 LGA S 25 S 25 0.594 0 0.082 0.668 1.903 95.455 85.758 1.903 LGA N 26 N 26 0.650 0 0.123 1.176 5.282 90.909 60.227 5.282 LGA H 27 H 27 0.671 0 0.079 0.251 1.400 81.818 76.909 1.400 LGA C 28 C 28 0.540 0 0.125 0.169 1.459 77.727 82.121 0.593 LGA V 29 V 29 0.432 0 0.076 0.106 0.685 95.455 92.208 0.527 LGA E 30 E 30 0.425 0 0.016 0.609 2.761 95.455 69.293 2.133 LGA V 31 V 31 0.366 0 0.043 1.171 2.491 90.909 77.143 2.491 LGA R 32 R 32 1.368 0 0.260 1.108 3.128 69.545 55.207 3.128 LGA C 33 C 33 0.519 0 0.504 0.571 2.288 77.727 69.091 2.288 LGA S 34 S 34 3.937 0 0.430 0.643 7.365 7.273 4.848 5.218 LGA D 35 D 35 10.619 0 0.031 1.145 14.289 0.000 0.000 11.622 LGA T 36 T 36 13.885 0 0.167 1.025 17.157 0.000 0.000 15.814 LGA K 37 K 37 13.687 0 0.035 1.243 18.323 0.000 0.000 18.093 LGA Y 38 Y 38 15.051 0 0.046 1.149 17.014 0.000 0.000 17.014 LGA T 39 T 39 13.543 0 0.104 0.113 17.117 0.000 0.000 13.844 LGA L 40 L 40 14.563 0 0.015 1.009 17.163 0.000 0.000 17.163 LGA C 41 C 41 14.916 0 0.107 0.786 18.109 0.000 0.000 14.663 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.012 5.140 5.706 65.078 53.455 31.308 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 34 1.30 79.268 78.653 2.425 LGA_LOCAL RMSD: 1.302 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.833 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.012 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.910659 * X + 0.340730 * Y + 0.233675 * Z + -4.446156 Y_new = 0.086942 * X + 0.394878 * Y + -0.914610 * Z + -12.636074 Z_new = -0.403908 * X + 0.853214 * Y + 0.329976 * Z + 0.786611 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.095183 0.415785 1.201769 [DEG: 5.4536 23.8227 68.8563 ] ZXZ: 0.250140 1.234519 -0.442139 [DEG: 14.3320 70.7327 -25.3327 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS457_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 34 1.30 78.653 5.01 REMARK ---------------------------------------------------------- MOLECULE T0955TS457_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -4.446 -12.636 0.787 1.00 0.00 N ATOM 2 CA SER 1 -3.118 -12.509 0.198 1.00 0.00 C ATOM 3 C SER 1 -2.133 -11.901 1.187 1.00 0.00 C ATOM 4 O SER 1 -2.052 -10.680 1.327 1.00 0.00 O ATOM 5 CB SER 1 -3.182 -11.658 -1.055 1.00 0.00 C ATOM 6 OG SER 1 -1.914 -11.522 -1.635 1.00 0.00 O ATOM 14 N GLN 2 -1.385 -12.758 1.872 1.00 0.00 N ATOM 15 CA GLN 2 -0.392 -12.306 2.839 1.00 0.00 C ATOM 16 C GLN 2 0.673 -11.442 2.174 1.00 0.00 C ATOM 17 O GLN 2 1.129 -10.452 2.744 1.00 0.00 O ATOM 18 CB GLN 2 0.266 -13.503 3.534 1.00 0.00 C ATOM 19 CG GLN 2 -0.653 -14.250 4.485 1.00 0.00 C ATOM 20 CD GLN 2 0.022 -15.455 5.114 1.00 0.00 C ATOM 21 OE1 GLN 2 0.997 -15.988 4.577 1.00 0.00 O ATOM 22 NE2 GLN 2 -0.494 -15.892 6.256 1.00 0.00 N ATOM 31 N GLU 3 1.065 -11.825 0.963 1.00 0.00 N ATOM 32 CA GLU 3 2.067 -11.079 0.211 1.00 0.00 C ATOM 33 C GLU 3 1.645 -9.627 0.022 1.00 0.00 C ATOM 34 O GLU 3 2.434 -8.708 0.240 1.00 0.00 O ATOM 35 CB GLU 3 2.308 -11.732 -1.151 1.00 0.00 C ATOM 36 CG GLU 3 3.326 -11.011 -2.024 1.00 0.00 C ATOM 37 CD GLU 3 3.518 -11.667 -3.363 1.00 0.00 C ATOM 38 OE1 GLU 3 2.920 -12.690 -3.593 1.00 0.00 O ATOM 39 OE2 GLU 3 4.265 -11.145 -4.156 1.00 0.00 O ATOM 46 N THR 4 0.396 -9.427 -0.385 1.00 0.00 N ATOM 47 CA THR 4 -0.124 -8.088 -0.631 1.00 0.00 C ATOM 48 C THR 4 -0.161 -7.267 0.651 1.00 0.00 C ATOM 49 O THR 4 0.184 -6.085 0.653 1.00 0.00 O ATOM 50 CB THR 4 -1.533 -8.146 -1.250 1.00 0.00 C ATOM 51 OG1 THR 4 -1.508 -8.962 -2.429 1.00 0.00 O ATOM 52 CG2 THR 4 -2.013 -6.750 -1.614 1.00 0.00 C ATOM 60 N ARG 5 -0.581 -7.900 1.741 1.00 0.00 N ATOM 61 CA ARG 5 -0.662 -7.230 3.033 1.00 0.00 C ATOM 62 C ARG 5 0.715 -6.781 3.506 1.00 0.00 C ATOM 63 O ARG 5 0.860 -5.708 4.093 1.00 0.00 O ATOM 64 CB ARG 5 -1.277 -8.150 4.076 1.00 0.00 C ATOM 65 CG ARG 5 -2.765 -8.408 3.902 1.00 0.00 C ATOM 66 CD ARG 5 -3.306 -9.261 4.993 1.00 0.00 C ATOM 67 NE ARG 5 -4.738 -9.474 4.853 1.00 0.00 N ATOM 68 CZ ARG 5 -5.496 -10.165 5.728 1.00 0.00 C ATOM 69 NH1 ARG 5 -4.947 -10.700 6.795 1.00 0.00 N ATOM 70 NH2 ARG 5 -6.793 -10.304 5.512 1.00 0.00 N ATOM 84 N LYS 6 1.724 -7.606 3.247 1.00 0.00 N ATOM 85 CA LYS 6 3.098 -7.271 3.598 1.00 0.00 C ATOM 86 C LYS 6 3.592 -6.068 2.804 1.00 0.00 C ATOM 87 O LYS 6 4.256 -5.185 3.347 1.00 0.00 O ATOM 88 CB LYS 6 4.019 -8.470 3.364 1.00 0.00 C ATOM 89 CG LYS 6 3.845 -9.603 4.366 1.00 0.00 C ATOM 90 CD LYS 6 4.728 -10.791 4.016 1.00 0.00 C ATOM 91 CE LYS 6 4.524 -11.940 4.993 1.00 0.00 C ATOM 92 NZ LYS 6 5.344 -13.129 4.634 1.00 0.00 N ATOM 106 N LYS 7 3.263 -6.040 1.517 1.00 0.00 N ATOM 107 CA LYS 7 3.602 -4.906 0.665 1.00 0.00 C ATOM 108 C LYS 7 2.888 -3.642 1.122 1.00 0.00 C ATOM 109 O LYS 7 3.459 -2.551 1.095 1.00 0.00 O ATOM 110 CB LYS 7 3.253 -5.210 -0.793 1.00 0.00 C ATOM 111 CG LYS 7 4.159 -6.238 -1.456 1.00 0.00 C ATOM 112 CD LYS 7 3.685 -6.567 -2.863 1.00 0.00 C ATOM 113 CE LYS 7 4.617 -7.559 -3.545 1.00 0.00 C ATOM 114 NZ LYS 7 4.095 -7.992 -4.870 1.00 0.00 N ATOM 128 N CYS 8 1.637 -3.793 1.542 1.00 0.00 N ATOM 129 CA CYS 8 0.882 -2.686 2.116 1.00 0.00 C ATOM 130 C CYS 8 1.535 -2.178 3.396 1.00 0.00 C ATOM 131 O CYS 8 1.673 -0.973 3.598 1.00 0.00 O ATOM 132 CB CYS 8 -0.555 -3.114 2.419 1.00 0.00 C ATOM 133 SG CYS 8 -1.603 -1.784 3.054 1.00 0.00 S ATOM 139 N THR 9 1.937 -3.108 4.258 1.00 0.00 N ATOM 140 CA THR 9 2.602 -2.757 5.507 1.00 0.00 C ATOM 141 C THR 9 3.858 -1.933 5.249 1.00 0.00 C ATOM 142 O THR 9 4.107 -0.936 5.927 1.00 0.00 O ATOM 143 CB THR 9 2.968 -4.017 6.312 1.00 0.00 C ATOM 144 OG1 THR 9 1.775 -4.746 6.630 1.00 0.00 O ATOM 145 CG2 THR 9 3.684 -3.638 7.599 1.00 0.00 C ATOM 153 N GLU 10 4.645 -2.355 4.266 1.00 0.00 N ATOM 154 CA GLU 10 5.845 -1.623 3.877 1.00 0.00 C ATOM 155 C GLU 10 5.520 -0.177 3.527 1.00 0.00 C ATOM 156 O GLU 10 6.156 0.751 4.028 1.00 0.00 O ATOM 157 CB GLU 10 6.525 -2.306 2.688 1.00 0.00 C ATOM 158 CG GLU 10 7.804 -1.627 2.221 1.00 0.00 C ATOM 159 CD GLU 10 8.445 -2.326 1.054 1.00 0.00 C ATOM 160 OE1 GLU 10 7.923 -3.328 0.627 1.00 0.00 O ATOM 161 OE2 GLU 10 9.458 -1.858 0.590 1.00 0.00 O ATOM 168 N MET 11 4.526 0.008 2.665 1.00 0.00 N ATOM 169 CA MET 11 4.116 1.343 2.244 1.00 0.00 C ATOM 170 C MET 11 3.541 2.136 3.410 1.00 0.00 C ATOM 171 O MET 11 3.770 3.341 3.528 1.00 0.00 O ATOM 172 CB MET 11 3.098 1.249 1.110 1.00 0.00 C ATOM 173 CG MET 11 3.667 0.737 -0.206 1.00 0.00 C ATOM 174 SD MET 11 2.479 0.827 -1.559 1.00 0.00 S ATOM 175 CE MET 11 3.223 -0.295 -2.739 1.00 0.00 C ATOM 185 N LYS 12 2.793 1.455 4.271 1.00 0.00 N ATOM 186 CA LYS 12 2.232 2.082 5.462 1.00 0.00 C ATOM 187 C LYS 12 3.322 2.715 6.318 1.00 0.00 C ATOM 188 O LYS 12 3.153 3.816 6.840 1.00 0.00 O ATOM 189 CB LYS 12 1.445 1.060 6.285 1.00 0.00 C ATOM 190 CG LYS 12 0.806 1.627 7.546 1.00 0.00 C ATOM 191 CD LYS 12 0.018 0.560 8.293 1.00 0.00 C ATOM 192 CE LYS 12 -0.598 1.118 9.567 1.00 0.00 C ATOM 193 NZ LYS 12 -1.357 0.081 10.318 1.00 0.00 N ATOM 207 N LYS 13 4.441 2.011 6.457 1.00 0.00 N ATOM 208 CA LYS 13 5.548 2.489 7.275 1.00 0.00 C ATOM 209 C LYS 13 6.422 3.470 6.504 1.00 0.00 C ATOM 210 O LYS 13 7.036 4.362 7.089 1.00 0.00 O ATOM 211 CB LYS 13 6.393 1.314 7.772 1.00 0.00 C ATOM 212 CG LYS 13 5.687 0.414 8.778 1.00 0.00 C ATOM 213 CD LYS 13 6.580 -0.741 9.207 1.00 0.00 C ATOM 214 CE LYS 13 5.885 -1.628 10.231 1.00 0.00 C ATOM 215 NZ LYS 13 6.733 -2.783 10.632 1.00 0.00 N ATOM 229 N LYS 14 6.471 3.302 5.186 1.00 0.00 N ATOM 230 CA LYS 14 7.384 4.069 4.349 1.00 0.00 C ATOM 231 C LYS 14 6.834 5.461 4.065 1.00 0.00 C ATOM 232 O LYS 14 7.537 6.460 4.218 1.00 0.00 O ATOM 233 CB LYS 14 7.655 3.333 3.037 1.00 0.00 C ATOM 234 CG LYS 14 8.608 4.057 2.094 1.00 0.00 C ATOM 235 CD LYS 14 8.917 3.213 0.867 1.00 0.00 C ATOM 236 CE LYS 14 9.849 3.945 -0.089 1.00 0.00 C ATOM 237 NZ LYS 14 10.189 3.117 -1.278 1.00 0.00 N ATOM 251 N PHE 15 5.573 5.520 3.652 1.00 0.00 N ATOM 252 CA PHE 15 4.985 6.760 3.160 1.00 0.00 C ATOM 253 C PHE 15 4.320 7.539 4.288 1.00 0.00 C ATOM 254 O PHE 15 3.705 6.955 5.180 1.00 0.00 O ATOM 255 CB PHE 15 3.961 6.469 2.062 1.00 0.00 C ATOM 256 CG PHE 15 4.573 6.033 0.762 1.00 0.00 C ATOM 257 CD1 PHE 15 4.855 4.696 0.524 1.00 0.00 C ATOM 258 CD2 PHE 15 4.872 6.959 -0.226 1.00 0.00 C ATOM 259 CE1 PHE 15 5.419 4.294 -0.672 1.00 0.00 C ATOM 260 CE2 PHE 15 5.434 6.561 -1.423 1.00 0.00 C ATOM 261 CZ PHE 15 5.709 5.226 -1.646 1.00 0.00 C ATOM 271 N LYS 16 4.446 8.862 4.242 1.00 0.00 N ATOM 272 CA LYS 16 3.761 9.730 5.191 1.00 0.00 C ATOM 273 C LYS 16 2.738 10.614 4.489 1.00 0.00 C ATOM 274 O LYS 16 2.932 11.014 3.342 1.00 0.00 O ATOM 275 CB LYS 16 4.769 10.593 5.951 1.00 0.00 C ATOM 276 CG LYS 16 5.726 9.810 6.839 1.00 0.00 C ATOM 277 CD LYS 16 6.662 10.738 7.599 1.00 0.00 C ATOM 278 CE LYS 16 7.625 9.955 8.480 1.00 0.00 C ATOM 279 NZ LYS 16 8.552 10.850 9.223 1.00 0.00 N ATOM 293 N ASN 17 1.647 10.915 5.187 1.00 0.00 N ATOM 294 CA ASN 17 0.584 11.740 4.626 1.00 0.00 C ATOM 295 C ASN 17 0.114 11.195 3.283 1.00 0.00 C ATOM 296 O ASN 17 -0.165 11.955 2.357 1.00 0.00 O ATOM 297 CB ASN 17 1.041 13.180 4.487 1.00 0.00 C ATOM 298 CG ASN 17 1.327 13.826 5.814 1.00 0.00 C ATOM 299 OD1 ASN 17 0.627 13.577 6.803 1.00 0.00 O ATOM 300 ND2 ASN 17 2.341 14.652 5.856 1.00 0.00 N ATOM 307 N CYS 18 0.027 9.872 3.184 1.00 0.00 N ATOM 308 CA CYS 18 -0.430 9.224 1.962 1.00 0.00 C ATOM 309 C CYS 18 -1.566 8.249 2.246 1.00 0.00 C ATOM 310 O CYS 18 -1.719 7.770 3.371 1.00 0.00 O ATOM 311 CB CYS 18 0.719 8.475 1.287 1.00 0.00 C ATOM 312 SG CYS 18 2.068 9.542 0.729 1.00 0.00 S ATOM 318 N GLU 19 -2.361 7.960 1.223 1.00 0.00 N ATOM 319 CA GLU 19 -3.372 6.913 1.310 1.00 0.00 C ATOM 320 C GLU 19 -2.870 5.609 0.702 1.00 0.00 C ATOM 321 O GLU 19 -2.453 5.573 -0.455 1.00 0.00 O ATOM 322 CB GLU 19 -4.658 7.352 0.605 1.00 0.00 C ATOM 323 CG GLU 19 -5.793 6.341 0.683 1.00 0.00 C ATOM 324 CD GLU 19 -7.019 6.779 -0.072 1.00 0.00 C ATOM 325 OE1 GLU 19 -6.958 7.791 -0.730 1.00 0.00 O ATOM 326 OE2 GLU 19 -8.016 6.103 0.010 1.00 0.00 O ATOM 333 N VAL 20 -2.910 4.541 1.491 1.00 0.00 N ATOM 334 CA VAL 20 -2.491 3.226 1.021 1.00 0.00 C ATOM 335 C VAL 20 -3.645 2.232 1.058 1.00 0.00 C ATOM 336 O VAL 20 -4.375 2.151 2.046 1.00 0.00 O ATOM 337 CB VAL 20 -1.331 2.694 1.886 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.933 1.295 1.441 1.00 0.00 C ATOM 339 CG2 VAL 20 -0.147 3.644 1.806 1.00 0.00 C ATOM 349 N ARG 21 -3.806 1.479 -0.024 1.00 0.00 N ATOM 350 CA ARG 21 -4.906 0.529 -0.139 1.00 0.00 C ATOM 351 C ARG 21 -4.394 -0.868 -0.464 1.00 0.00 C ATOM 352 O ARG 21 -3.629 -1.057 -1.409 1.00 0.00 O ATOM 353 CB ARG 21 -5.884 0.970 -1.219 1.00 0.00 C ATOM 354 CG ARG 21 -6.622 2.265 -0.921 1.00 0.00 C ATOM 355 CD ARG 21 -7.652 2.559 -1.950 1.00 0.00 C ATOM 356 NE ARG 21 -8.352 3.804 -1.677 1.00 0.00 N ATOM 357 CZ ARG 21 -9.434 4.237 -2.354 1.00 0.00 C ATOM 358 NH1 ARG 21 -9.926 3.518 -3.337 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.001 5.386 -2.027 1.00 0.00 N ATOM 373 N CYS 22 -4.821 -1.848 0.328 1.00 0.00 N ATOM 374 CA CYS 22 -4.484 -3.243 0.069 1.00 0.00 C ATOM 375 C CYS 22 -5.577 -3.933 -0.735 1.00 0.00 C ATOM 376 O CYS 22 -6.725 -4.016 -0.298 1.00 0.00 O ATOM 377 CB CYS 22 -4.272 -3.997 1.383 1.00 0.00 C ATOM 378 SG CYS 22 -3.910 -5.756 1.174 1.00 0.00 S ATOM 384 N ASP 23 -5.215 -4.427 -1.914 1.00 0.00 N ATOM 385 CA ASP 23 -6.156 -5.144 -2.766 1.00 0.00 C ATOM 386 C ASP 23 -5.775 -6.614 -2.894 1.00 0.00 C ATOM 387 O ASP 23 -4.880 -6.968 -3.661 1.00 0.00 O ATOM 388 CB ASP 23 -6.217 -4.504 -4.155 1.00 0.00 C ATOM 389 CG ASP 23 -7.123 -5.261 -5.117 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.429 -6.399 -4.845 1.00 0.00 O ATOM 391 OD2 ASP 23 -7.501 -4.695 -6.115 1.00 0.00 O ATOM 396 N GLU 24 -6.458 -7.465 -2.137 1.00 0.00 N ATOM 397 CA GLU 24 -6.081 -8.869 -2.030 1.00 0.00 C ATOM 398 C GLU 24 -6.689 -9.691 -3.159 1.00 0.00 C ATOM 399 O GLU 24 -6.445 -10.892 -3.267 1.00 0.00 O ATOM 400 CB GLU 24 -6.519 -9.438 -0.679 1.00 0.00 C ATOM 401 CG GLU 24 -5.852 -8.787 0.524 1.00 0.00 C ATOM 402 CD GLU 24 -6.168 -9.484 1.818 1.00 0.00 C ATOM 403 OE1 GLU 24 -5.997 -10.678 1.884 1.00 0.00 O ATOM 404 OE2 GLU 24 -6.580 -8.823 2.742 1.00 0.00 O ATOM 411 N SER 25 -7.485 -9.036 -3.998 1.00 0.00 N ATOM 412 CA SER 25 -8.181 -9.716 -5.084 1.00 0.00 C ATOM 413 C SER 25 -7.406 -9.604 -6.391 1.00 0.00 C ATOM 414 O SER 25 -7.486 -10.484 -7.248 1.00 0.00 O ATOM 415 CB SER 25 -9.571 -9.136 -5.258 1.00 0.00 C ATOM 416 OG SER 25 -9.509 -7.812 -5.711 1.00 0.00 O ATOM 422 N ASN 26 -6.657 -8.517 -6.537 1.00 0.00 N ATOM 423 CA ASN 26 -5.757 -8.354 -7.672 1.00 0.00 C ATOM 424 C ASN 26 -4.300 -8.461 -7.240 1.00 0.00 C ATOM 425 O ASN 26 -3.388 -8.271 -8.044 1.00 0.00 O ATOM 426 CB ASN 26 -6.012 -7.031 -8.369 1.00 0.00 C ATOM 427 CG ASN 26 -7.350 -6.986 -9.052 1.00 0.00 C ATOM 428 OD1 ASN 26 -7.541 -7.592 -10.112 1.00 0.00 O ATOM 429 ND2 ASN 26 -8.281 -6.278 -8.464 1.00 0.00 N ATOM 436 N HIS 27 -4.087 -8.765 -5.964 1.00 0.00 N ATOM 437 CA HIS 27 -2.740 -8.893 -5.421 1.00 0.00 C ATOM 438 C HIS 27 -1.920 -7.637 -5.684 1.00 0.00 C ATOM 439 O HIS 27 -0.765 -7.715 -6.103 1.00 0.00 O ATOM 440 CB HIS 27 -2.028 -10.110 -6.019 1.00 0.00 C ATOM 441 CG HIS 27 -2.715 -11.409 -5.734 1.00 0.00 C ATOM 442 ND1 HIS 27 -2.702 -11.999 -4.486 1.00 0.00 N ATOM 443 CD2 HIS 27 -3.433 -12.233 -6.532 1.00 0.00 C ATOM 444 CE1 HIS 27 -3.384 -13.130 -4.532 1.00 0.00 C ATOM 445 NE2 HIS 27 -3.837 -13.295 -5.761 1.00 0.00 N ATOM 453 N CYS 28 -2.522 -6.479 -5.434 1.00 0.00 N ATOM 454 CA CYS 28 -1.867 -5.202 -5.695 1.00 0.00 C ATOM 455 C CYS 28 -1.955 -4.282 -4.485 1.00 0.00 C ATOM 456 O CYS 28 -2.844 -4.427 -3.645 1.00 0.00 O ATOM 457 CB CYS 28 -2.499 -4.510 -6.902 1.00 0.00 C ATOM 458 SG CYS 28 -2.343 -5.434 -8.450 1.00 0.00 S ATOM 464 N VAL 29 -1.027 -3.335 -4.399 1.00 0.00 N ATOM 465 CA VAL 29 -1.117 -2.260 -3.420 1.00 0.00 C ATOM 466 C VAL 29 -1.008 -0.895 -4.086 1.00 0.00 C ATOM 467 O VAL 29 -0.121 -0.665 -4.909 1.00 0.00 O ATOM 468 CB VAL 29 -0.003 -2.403 -2.365 1.00 0.00 C ATOM 469 CG1 VAL 29 -0.104 -1.294 -1.329 1.00 0.00 C ATOM 470 CG2 VAL 29 -0.089 -3.769 -1.703 1.00 0.00 C ATOM 480 N GLU 30 -1.914 0.008 -3.727 1.00 0.00 N ATOM 481 CA GLU 30 -1.893 1.367 -4.256 1.00 0.00 C ATOM 482 C GLU 30 -1.458 2.366 -3.191 1.00 0.00 C ATOM 483 O GLU 30 -1.755 2.195 -2.009 1.00 0.00 O ATOM 484 CB GLU 30 -3.273 1.750 -4.796 1.00 0.00 C ATOM 485 CG GLU 30 -3.730 0.929 -5.993 1.00 0.00 C ATOM 486 CD GLU 30 -5.090 1.331 -6.494 1.00 0.00 C ATOM 487 OE1 GLU 30 -5.700 2.177 -5.885 1.00 0.00 O ATOM 488 OE2 GLU 30 -5.520 0.791 -7.486 1.00 0.00 O ATOM 495 N VAL 31 -0.754 3.408 -3.617 1.00 0.00 N ATOM 496 CA VAL 31 -0.400 4.508 -2.729 1.00 0.00 C ATOM 497 C VAL 31 -0.457 5.844 -3.458 1.00 0.00 C ATOM 498 O VAL 31 0.001 5.962 -4.595 1.00 0.00 O ATOM 499 CB VAL 31 1.015 4.299 -2.156 1.00 0.00 C ATOM 500 CG1 VAL 31 2.029 4.157 -3.281 1.00 0.00 C ATOM 501 CG2 VAL 31 1.380 5.460 -1.243 1.00 0.00 C ATOM 511 N ARG 32 -1.022 6.849 -2.798 1.00 0.00 N ATOM 512 CA ARG 32 -1.038 8.206 -3.333 1.00 0.00 C ATOM 513 C ARG 32 -0.958 9.240 -2.217 1.00 0.00 C ATOM 514 O ARG 32 -1.424 9.002 -1.103 1.00 0.00 O ATOM 515 CB ARG 32 -2.299 8.443 -4.150 1.00 0.00 C ATOM 516 CG ARG 32 -3.596 8.373 -3.361 1.00 0.00 C ATOM 517 CD ARG 32 -4.781 8.604 -4.227 1.00 0.00 C ATOM 518 NE ARG 32 -6.024 8.524 -3.478 1.00 0.00 N ATOM 519 CZ ARG 32 -7.245 8.763 -3.996 1.00 0.00 C ATOM 520 NH1 ARG 32 -7.370 9.094 -5.262 1.00 0.00 N ATOM 521 NH2 ARG 32 -8.318 8.664 -3.229 1.00 0.00 N ATOM 535 N CYS 33 -0.364 10.389 -2.523 1.00 0.00 N ATOM 536 CA CYS 33 -0.289 11.490 -1.572 1.00 0.00 C ATOM 537 C CYS 33 -1.663 12.103 -1.329 1.00 0.00 C ATOM 538 O CYS 33 -2.465 12.239 -2.253 1.00 0.00 O ATOM 539 CB CYS 33 0.665 12.573 -2.076 1.00 0.00 C ATOM 540 SG CYS 33 2.389 12.041 -2.196 1.00 0.00 S ATOM 546 N SER 34 -1.928 12.470 -0.080 1.00 0.00 N ATOM 547 CA SER 34 -3.199 13.088 0.283 1.00 0.00 C ATOM 548 C SER 34 -3.017 14.105 1.401 1.00 0.00 C ATOM 549 O SER 34 -1.893 14.479 1.737 1.00 0.00 O ATOM 550 CB SER 34 -4.193 12.026 0.710 1.00 0.00 C ATOM 551 OG SER 34 -5.482 12.562 0.825 1.00 0.00 O ATOM 557 N ASP 35 -4.129 14.551 1.976 1.00 0.00 N ATOM 558 CA ASP 35 -4.095 15.531 3.054 1.00 0.00 C ATOM 559 C ASP 35 -3.714 14.882 4.378 1.00 0.00 C ATOM 560 O ASP 35 -3.015 15.481 5.196 1.00 0.00 O ATOM 561 CB ASP 35 -5.452 16.226 3.191 1.00 0.00 C ATOM 562 CG ASP 35 -5.791 17.107 1.997 1.00 0.00 C ATOM 563 OD1 ASP 35 -4.912 17.375 1.213 1.00 0.00 O ATOM 564 OD2 ASP 35 -6.926 17.502 1.879 1.00 0.00 O ATOM 569 N THR 36 -4.175 13.653 4.584 1.00 0.00 N ATOM 570 CA THR 36 -3.927 12.939 5.830 1.00 0.00 C ATOM 571 C THR 36 -3.421 11.528 5.566 1.00 0.00 C ATOM 572 O THR 36 -3.559 11.006 4.460 1.00 0.00 O ATOM 573 CB THR 36 -5.199 12.880 6.697 1.00 0.00 C ATOM 574 OG1 THR 36 -6.204 12.110 6.023 1.00 0.00 O ATOM 575 CG2 THR 36 -5.731 14.280 6.961 1.00 0.00 C ATOM 583 N LYS 37 -2.835 10.914 6.588 1.00 0.00 N ATOM 584 CA LYS 37 -2.325 9.553 6.474 1.00 0.00 C ATOM 585 C LYS 37 -3.409 8.530 6.790 1.00 0.00 C ATOM 586 O LYS 37 -4.068 8.610 7.828 1.00 0.00 O ATOM 587 CB LYS 37 -1.125 9.351 7.400 1.00 0.00 C ATOM 588 CG LYS 37 -0.469 7.981 7.290 1.00 0.00 C ATOM 589 CD LYS 37 0.819 7.918 8.099 1.00 0.00 C ATOM 590 CE LYS 37 1.398 6.511 8.108 1.00 0.00 C ATOM 591 NZ LYS 37 1.723 6.034 6.737 1.00 0.00 N ATOM 605 N TYR 38 -3.590 7.569 5.891 1.00 0.00 N ATOM 606 CA TYR 38 -4.590 6.525 6.076 1.00 0.00 C ATOM 607 C TYR 38 -4.206 5.256 5.325 1.00 0.00 C ATOM 608 O TYR 38 -3.683 5.315 4.212 1.00 0.00 O ATOM 609 CB TYR 38 -5.967 7.015 5.622 1.00 0.00 C ATOM 610 CG TYR 38 -7.056 5.973 5.743 1.00 0.00 C ATOM 611 CD1 TYR 38 -7.660 5.741 6.971 1.00 0.00 C ATOM 612 CD2 TYR 38 -7.451 5.249 4.628 1.00 0.00 C ATOM 613 CE1 TYR 38 -8.656 4.789 7.081 1.00 0.00 C ATOM 614 CE2 TYR 38 -8.447 4.298 4.739 1.00 0.00 C ATOM 615 CZ TYR 38 -9.048 4.067 5.960 1.00 0.00 C ATOM 616 OH TYR 38 -10.039 3.120 6.070 1.00 0.00 O ATOM 626 N THR 39 -4.471 4.107 5.940 1.00 0.00 N ATOM 627 CA THR 39 -4.233 2.821 5.295 1.00 0.00 C ATOM 628 C THR 39 -5.462 1.926 5.383 1.00 0.00 C ATOM 629 O THR 39 -6.061 1.781 6.450 1.00 0.00 O ATOM 630 CB THR 39 -3.023 2.103 5.920 1.00 0.00 C ATOM 631 OG1 THR 39 -1.855 2.921 5.782 1.00 0.00 O ATOM 632 CG2 THR 39 -2.786 0.765 5.236 1.00 0.00 C ATOM 640 N LEU 40 -5.834 1.326 4.258 1.00 0.00 N ATOM 641 CA LEU 40 -6.914 0.348 4.231 1.00 0.00 C ATOM 642 C LEU 40 -6.374 -1.065 4.055 1.00 0.00 C ATOM 643 O LEU 40 -5.891 -1.426 2.982 1.00 0.00 O ATOM 644 CB LEU 40 -7.895 0.672 3.097 1.00 0.00 C ATOM 645 CG LEU 40 -9.057 -0.314 2.921 1.00 0.00 C ATOM 646 CD1 LEU 40 -9.918 -0.316 4.178 1.00 0.00 C ATOM 647 CD2 LEU 40 -9.875 0.078 1.699 1.00 0.00 C ATOM 659 N CYS 41 -6.457 -1.861 5.116 1.00 0.00 N ATOM 660 CA CYS 41 -5.882 -3.202 5.115 1.00 0.00 C ATOM 661 C CYS 41 -6.323 -3.990 6.341 1.00 0.00 C ATOM 662 O CYS 41 -7.405 -4.508 6.365 1.00 0.00 O ATOM 663 OXT CYS 41 -5.587 -4.095 7.283 1.00 0.00 O ATOM 664 CB CYS 41 -4.356 -3.131 5.081 1.00 0.00 C ATOM 665 SG CYS 41 -3.546 -4.741 4.913 1.00 0.00 S TER END