####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS457_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 1 - 40 4.75 5.11 LCS_AVERAGE: 96.61 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 1 - 34 1.48 5.85 LCS_AVERAGE: 72.93 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 2 - 22 0.97 5.97 LCS_AVERAGE: 40.87 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 15 34 40 3 3 4 7 23 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT Q 2 Q 2 21 34 40 13 23 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT E 3 E 3 21 34 40 10 23 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT T 4 T 4 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT R 5 R 5 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT K 6 K 6 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT K 7 K 7 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT C 8 C 8 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT T 9 T 9 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT E 10 E 10 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT M 11 M 11 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT K 12 K 12 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT K 13 K 13 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT K 14 K 14 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT F 15 F 15 21 34 40 10 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT K 16 K 16 21 34 40 3 3 4 11 30 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT N 17 N 17 21 34 40 3 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT C 18 C 18 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT E 19 E 19 21 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT V 20 V 20 21 34 40 8 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT R 21 R 21 21 34 40 8 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT C 22 C 22 21 34 40 7 20 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT D 23 D 23 17 34 40 5 18 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT E 24 E 24 17 34 40 8 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT S 25 S 25 17 34 40 8 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT N 26 N 26 17 34 40 8 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT H 27 H 27 17 34 40 8 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT C 28 C 28 17 34 40 13 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT V 29 V 29 17 34 40 14 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT E 30 E 30 17 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT V 31 V 31 17 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT R 32 R 32 17 34 40 14 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT C 33 C 33 17 34 40 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT S 34 S 34 4 34 40 3 7 15 25 30 32 33 34 34 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT D 35 D 35 4 10 40 3 4 6 8 9 12 22 27 31 34 35 35 35 35 36 37 37 39 39 41 LCS_GDT T 36 T 36 6 10 40 6 6 6 8 9 12 13 14 15 23 27 28 31 34 36 37 37 39 39 41 LCS_GDT K 37 K 37 6 10 40 6 6 6 8 9 12 13 14 15 17 20 22 31 32 33 37 37 39 39 41 LCS_GDT Y 38 Y 38 6 10 40 6 6 6 8 9 12 13 14 15 17 20 22 24 25 26 28 35 39 39 41 LCS_GDT T 39 T 39 6 10 40 6 6 6 8 9 12 13 14 15 17 20 22 24 25 26 28 30 39 39 41 LCS_GDT L 40 L 40 6 10 40 6 6 6 8 9 12 13 14 15 17 20 22 24 25 26 28 30 31 31 41 LCS_GDT C 41 C 41 6 10 24 6 6 6 8 9 12 13 14 15 17 20 22 24 25 25 27 30 31 31 41 LCS_AVERAGE LCS_A: 70.14 ( 40.87 72.93 96.61 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 25 30 31 31 33 33 34 34 34 35 35 35 35 36 37 37 39 39 41 GDT PERCENT_AT 39.02 60.98 73.17 75.61 75.61 80.49 80.49 82.93 82.93 82.93 85.37 85.37 85.37 85.37 87.80 90.24 90.24 95.12 95.12 100.00 GDT RMS_LOCAL 0.36 0.68 0.82 0.86 0.86 1.22 1.22 1.48 1.48 1.48 2.27 2.27 2.27 2.27 3.00 3.48 3.48 4.35 4.35 5.10 GDT RMS_ALL_AT 5.79 5.89 5.96 5.98 5.98 6.02 6.02 5.85 5.85 5.85 5.57 5.57 5.57 5.57 5.38 5.28 5.28 5.15 5.15 5.10 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.928 0 0.090 0.662 6.353 7.273 5.758 5.950 LGA Q 2 Q 2 1.569 0 0.212 1.192 3.740 58.182 44.646 3.740 LGA E 3 E 3 1.293 0 0.031 1.473 6.641 65.455 35.960 5.999 LGA T 4 T 4 0.715 0 0.023 1.134 2.602 86.364 70.390 2.602 LGA R 5 R 5 0.465 0 0.016 0.358 3.130 95.455 69.091 2.565 LGA K 6 K 6 0.417 0 0.034 1.277 6.805 100.000 57.172 6.787 LGA K 7 K 7 0.301 0 0.022 0.655 2.294 100.000 73.939 2.039 LGA C 8 C 8 0.507 0 0.053 0.764 2.173 86.364 77.576 2.173 LGA T 9 T 9 0.718 0 0.018 0.107 1.186 81.818 77.143 1.015 LGA E 10 E 10 0.552 0 0.032 0.945 3.747 90.909 60.606 3.747 LGA M 11 M 11 0.355 0 0.034 0.120 0.617 95.455 90.909 0.470 LGA K 12 K 12 0.672 0 0.035 0.624 3.562 86.364 52.929 3.562 LGA K 13 K 13 0.779 0 0.038 0.905 3.406 77.727 64.444 3.406 LGA K 14 K 14 0.724 0 0.098 0.992 6.735 81.818 51.717 6.735 LGA F 15 F 15 1.034 0 0.446 0.411 3.086 54.091 55.207 2.477 LGA K 16 K 16 3.446 0 0.075 1.343 6.375 27.727 14.141 6.337 LGA N 17 N 17 1.086 0 0.388 0.399 2.398 62.273 55.000 1.532 LGA C 18 C 18 0.495 0 0.018 0.061 0.817 100.000 93.939 0.817 LGA E 19 E 19 0.728 0 0.215 0.481 2.410 81.818 68.081 1.368 LGA V 20 V 20 1.099 0 0.058 0.072 1.290 65.455 65.455 1.110 LGA R 21 R 21 1.148 0 0.017 1.091 4.868 69.545 39.669 4.868 LGA C 22 C 22 1.450 0 0.101 0.883 4.976 65.455 52.424 4.976 LGA D 23 D 23 1.831 0 0.311 1.139 4.177 37.727 31.591 3.108 LGA E 24 E 24 0.914 0 0.193 0.709 3.740 81.818 59.596 3.740 LGA S 25 S 25 1.170 0 0.066 0.656 3.124 65.455 57.576 3.124 LGA N 26 N 26 1.033 0 0.131 1.177 5.402 69.545 48.636 5.402 LGA H 27 H 27 1.158 0 0.110 0.344 2.965 69.545 51.455 2.965 LGA C 28 C 28 0.908 0 0.191 0.762 2.274 74.091 66.667 2.274 LGA V 29 V 29 0.427 0 0.059 0.080 0.626 95.455 94.805 0.388 LGA E 30 E 30 0.648 0 0.083 0.649 3.092 95.455 73.737 0.840 LGA V 31 V 31 0.528 0 0.051 0.061 0.647 90.909 87.013 0.611 LGA R 32 R 32 0.421 0 0.257 1.132 3.824 91.364 67.769 3.824 LGA C 33 C 33 0.666 0 0.501 0.568 2.249 70.000 61.515 2.249 LGA S 34 S 34 4.574 0 0.430 0.643 7.666 5.000 3.333 5.843 LGA D 35 D 35 11.173 0 0.030 1.144 14.522 0.000 0.000 12.250 LGA T 36 T 36 13.936 0 0.200 1.035 17.117 0.000 0.000 16.014 LGA K 37 K 37 13.435 0 0.060 0.952 20.292 0.000 0.000 20.292 LGA Y 38 Y 38 15.120 0 0.075 1.141 17.337 0.000 0.000 17.337 LGA T 39 T 39 13.568 0 0.082 0.094 17.106 0.000 0.000 13.868 LGA L 40 L 40 14.505 0 0.015 1.003 17.367 0.000 0.000 17.367 LGA C 41 C 41 14.357 0 0.107 0.904 16.992 0.000 0.000 15.552 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.099 5.191 5.811 60.632 48.290 26.297 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 34 1.48 77.439 77.497 2.157 LGA_LOCAL RMSD: 1.476 Number of atoms: 34 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.849 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.099 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.710707 * X + 0.148563 * Y + -0.687622 * Z + -4.013297 Y_new = -0.563795 * X + 0.704887 * Y + -0.430430 * Z + -11.658620 Z_new = 0.420750 * X + 0.693588 * Y + 0.584727 * Z + -0.677096 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.670635 -0.434272 0.870353 [DEG: -38.4245 -24.8819 49.8676 ] ZXZ: -1.011501 0.946253 0.545279 [DEG: -57.9547 54.2163 31.2422 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS457_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS457_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 34 1.48 77.497 5.10 REMARK ---------------------------------------------------------- MOLECULE T0955TS457_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -4.013 -11.659 -0.677 1.00 0.00 N ATOM 2 CA SER 1 -2.977 -12.481 -0.064 1.00 0.00 C ATOM 3 C SER 1 -2.375 -11.790 1.153 1.00 0.00 C ATOM 4 O SER 1 -2.406 -10.564 1.262 1.00 0.00 O ATOM 5 CB SER 1 -1.888 -12.787 -1.073 1.00 0.00 C ATOM 6 OG SER 1 -1.149 -11.637 -1.379 1.00 0.00 O ATOM 14 N GLN 2 -1.825 -12.584 2.066 1.00 0.00 N ATOM 15 CA GLN 2 -1.129 -12.047 3.229 1.00 0.00 C ATOM 16 C GLN 2 0.083 -11.224 2.813 1.00 0.00 C ATOM 17 O GLN 2 0.412 -10.221 3.447 1.00 0.00 O ATOM 18 CB GLN 2 -0.696 -13.179 4.165 1.00 0.00 C ATOM 19 CG GLN 2 -1.846 -13.872 4.877 1.00 0.00 C ATOM 20 CD GLN 2 -1.377 -15.013 5.759 1.00 0.00 C ATOM 21 OE1 GLN 2 -0.306 -15.587 5.539 1.00 0.00 O ATOM 22 NE2 GLN 2 -2.176 -15.350 6.764 1.00 0.00 N ATOM 31 N GLU 3 0.746 -11.653 1.744 1.00 0.00 N ATOM 32 CA GLU 3 1.951 -10.984 1.270 1.00 0.00 C ATOM 33 C GLU 3 1.643 -9.575 0.780 1.00 0.00 C ATOM 34 O GLU 3 2.436 -8.653 0.970 1.00 0.00 O ATOM 35 CB GLU 3 2.604 -11.793 0.148 1.00 0.00 C ATOM 36 CG GLU 3 3.144 -13.150 0.583 1.00 0.00 C ATOM 37 CD GLU 3 4.177 -13.047 1.670 1.00 0.00 C ATOM 38 OE1 GLU 3 5.121 -12.313 1.498 1.00 0.00 O ATOM 39 OE2 GLU 3 4.022 -13.702 2.673 1.00 0.00 O ATOM 46 N THR 4 0.485 -9.415 0.147 1.00 0.00 N ATOM 47 CA THR 4 0.026 -8.102 -0.288 1.00 0.00 C ATOM 48 C THR 4 -0.199 -7.175 0.899 1.00 0.00 C ATOM 49 O THR 4 0.147 -5.995 0.852 1.00 0.00 O ATOM 50 CB THR 4 -1.271 -8.212 -1.112 1.00 0.00 C ATOM 51 OG1 THR 4 -1.061 -9.095 -2.222 1.00 0.00 O ATOM 52 CG2 THR 4 -1.694 -6.846 -1.628 1.00 0.00 C ATOM 60 N ARG 5 -0.783 -7.716 1.963 1.00 0.00 N ATOM 61 CA ARG 5 -1.011 -6.952 3.183 1.00 0.00 C ATOM 62 C ARG 5 0.304 -6.552 3.839 1.00 0.00 C ATOM 63 O ARG 5 0.423 -5.465 4.404 1.00 0.00 O ATOM 64 CB ARG 5 -1.843 -7.756 4.171 1.00 0.00 C ATOM 65 CG ARG 5 -3.282 -8.000 3.746 1.00 0.00 C ATOM 66 CD ARG 5 -4.038 -8.760 4.775 1.00 0.00 C ATOM 67 NE ARG 5 -5.371 -9.117 4.316 1.00 0.00 N ATOM 68 CZ ARG 5 -6.313 -9.701 5.082 1.00 0.00 C ATOM 69 NH1 ARG 5 -6.054 -9.986 6.339 1.00 0.00 N ATOM 70 NH2 ARG 5 -7.497 -9.987 4.570 1.00 0.00 N ATOM 84 N LYS 6 1.292 -7.438 3.759 1.00 0.00 N ATOM 85 CA LYS 6 2.628 -7.142 4.260 1.00 0.00 C ATOM 86 C LYS 6 3.255 -5.978 3.504 1.00 0.00 C ATOM 87 O LYS 6 3.898 -5.113 4.099 1.00 0.00 O ATOM 88 CB LYS 6 3.524 -8.378 4.159 1.00 0.00 C ATOM 89 CG LYS 6 3.176 -9.489 5.141 1.00 0.00 C ATOM 90 CD LYS 6 4.069 -10.704 4.939 1.00 0.00 C ATOM 91 CE LYS 6 3.588 -11.888 5.767 1.00 0.00 C ATOM 92 NZ LYS 6 4.383 -13.116 5.493 1.00 0.00 N ATOM 106 N LYS 7 3.064 -5.962 2.189 1.00 0.00 N ATOM 107 CA LYS 7 3.556 -4.869 1.357 1.00 0.00 C ATOM 108 C LYS 7 2.926 -3.543 1.759 1.00 0.00 C ATOM 109 O LYS 7 3.584 -2.503 1.749 1.00 0.00 O ATOM 110 CB LYS 7 3.283 -5.157 -0.120 1.00 0.00 C ATOM 111 CG LYS 7 4.146 -6.260 -0.718 1.00 0.00 C ATOM 112 CD LYS 7 3.780 -6.521 -2.171 1.00 0.00 C ATOM 113 CE LYS 7 4.608 -7.656 -2.755 1.00 0.00 C ATOM 114 NZ LYS 7 4.228 -7.957 -4.162 1.00 0.00 N ATOM 128 N CYS 8 1.645 -3.586 2.113 1.00 0.00 N ATOM 129 CA CYS 8 0.938 -2.398 2.575 1.00 0.00 C ATOM 130 C CYS 8 1.578 -1.831 3.836 1.00 0.00 C ATOM 131 O CYS 8 1.689 -0.616 3.994 1.00 0.00 O ATOM 132 CB CYS 8 -0.530 -2.721 2.856 1.00 0.00 C ATOM 133 SG CYS 8 -1.498 -3.104 1.376 1.00 0.00 S ATOM 139 N THR 9 1.997 -2.719 4.730 1.00 0.00 N ATOM 140 CA THR 9 2.699 -2.312 5.942 1.00 0.00 C ATOM 141 C THR 9 3.997 -1.588 5.611 1.00 0.00 C ATOM 142 O THR 9 4.331 -0.577 6.230 1.00 0.00 O ATOM 143 CB THR 9 2.999 -3.525 6.842 1.00 0.00 C ATOM 144 OG1 THR 9 1.769 -4.137 7.250 1.00 0.00 O ATOM 145 CG2 THR 9 3.780 -3.095 8.075 1.00 0.00 C ATOM 153 N GLU 10 4.726 -2.110 4.630 1.00 0.00 N ATOM 154 CA GLU 10 5.970 -1.491 4.187 1.00 0.00 C ATOM 155 C GLU 10 5.718 -0.103 3.611 1.00 0.00 C ATOM 156 O GLU 10 6.510 0.818 3.814 1.00 0.00 O ATOM 157 CB GLU 10 6.661 -2.369 3.142 1.00 0.00 C ATOM 158 CG GLU 10 7.230 -3.670 3.692 1.00 0.00 C ATOM 159 CD GLU 10 8.362 -3.450 4.657 1.00 0.00 C ATOM 160 OE1 GLU 10 9.283 -2.747 4.314 1.00 0.00 O ATOM 161 OE2 GLU 10 8.308 -3.987 5.739 1.00 0.00 O ATOM 168 N MET 11 4.611 0.041 2.889 1.00 0.00 N ATOM 169 CA MET 11 4.219 1.332 2.337 1.00 0.00 C ATOM 170 C MET 11 3.826 2.307 3.439 1.00 0.00 C ATOM 171 O MET 11 4.077 3.508 3.339 1.00 0.00 O ATOM 172 CB MET 11 3.070 1.156 1.347 1.00 0.00 C ATOM 173 CG MET 11 3.433 0.370 0.095 1.00 0.00 C ATOM 174 SD MET 11 4.777 1.129 -0.837 1.00 0.00 S ATOM 175 CE MET 11 6.184 0.222 -0.200 1.00 0.00 C ATOM 185 N LYS 12 3.209 1.783 4.493 1.00 0.00 N ATOM 186 CA LYS 12 2.883 2.584 5.667 1.00 0.00 C ATOM 187 C LYS 12 4.138 3.181 6.291 1.00 0.00 C ATOM 188 O LYS 12 4.135 4.327 6.742 1.00 0.00 O ATOM 189 CB LYS 12 2.132 1.740 6.699 1.00 0.00 C ATOM 190 CG LYS 12 1.648 2.519 7.915 1.00 0.00 C ATOM 191 CD LYS 12 0.883 1.623 8.877 1.00 0.00 C ATOM 192 CE LYS 12 0.390 2.401 10.088 1.00 0.00 C ATOM 193 NZ LYS 12 -0.379 1.541 11.027 1.00 0.00 N ATOM 207 N LYS 13 5.211 2.397 6.315 1.00 0.00 N ATOM 208 CA LYS 13 6.487 2.862 6.847 1.00 0.00 C ATOM 209 C LYS 13 7.181 3.802 5.870 1.00 0.00 C ATOM 210 O LYS 13 7.786 4.796 6.272 1.00 0.00 O ATOM 211 CB LYS 13 7.396 1.676 7.171 1.00 0.00 C ATOM 212 CG LYS 13 6.931 0.830 8.350 1.00 0.00 C ATOM 213 CD LYS 13 7.953 -0.241 8.699 1.00 0.00 C ATOM 214 CE LYS 13 7.978 -1.345 7.651 1.00 0.00 C ATOM 215 NZ LYS 13 8.891 -2.456 8.036 1.00 0.00 N ATOM 229 N LYS 14 7.091 3.482 4.583 1.00 0.00 N ATOM 230 CA LYS 14 7.783 4.246 3.552 1.00 0.00 C ATOM 231 C LYS 14 7.220 5.657 3.442 1.00 0.00 C ATOM 232 O LYS 14 7.959 6.639 3.508 1.00 0.00 O ATOM 233 CB LYS 14 7.688 3.535 2.202 1.00 0.00 C ATOM 234 CG LYS 14 8.369 4.269 1.055 1.00 0.00 C ATOM 235 CD LYS 14 8.290 3.469 -0.237 1.00 0.00 C ATOM 236 CE LYS 14 8.908 4.232 -1.400 1.00 0.00 C ATOM 237 NZ LYS 14 8.885 3.439 -2.659 1.00 0.00 N ATOM 251 N PHE 15 5.905 5.752 3.273 1.00 0.00 N ATOM 252 CA PHE 15 5.260 7.027 2.985 1.00 0.00 C ATOM 253 C PHE 15 4.803 7.716 4.265 1.00 0.00 C ATOM 254 O PHE 15 4.502 7.057 5.261 1.00 0.00 O ATOM 255 CB PHE 15 4.063 6.823 2.055 1.00 0.00 C ATOM 256 CG PHE 15 4.443 6.455 0.649 1.00 0.00 C ATOM 257 CD1 PHE 15 4.391 5.135 0.224 1.00 0.00 C ATOM 258 CD2 PHE 15 4.855 7.425 -0.251 1.00 0.00 C ATOM 259 CE1 PHE 15 4.741 4.794 -1.068 1.00 0.00 C ATOM 260 CE2 PHE 15 5.205 7.088 -1.545 1.00 0.00 C ATOM 261 CZ PHE 15 5.147 5.771 -1.953 1.00 0.00 C ATOM 271 N LYS 16 4.754 9.043 4.233 1.00 0.00 N ATOM 272 CA LYS 16 4.454 9.828 5.424 1.00 0.00 C ATOM 273 C LYS 16 3.034 10.377 5.379 1.00 0.00 C ATOM 274 O LYS 16 2.380 10.519 6.412 1.00 0.00 O ATOM 275 CB LYS 16 5.457 10.972 5.577 1.00 0.00 C ATOM 276 CG LYS 16 6.916 10.536 5.559 1.00 0.00 C ATOM 277 CD LYS 16 7.189 9.472 6.611 1.00 0.00 C ATOM 278 CE LYS 16 8.640 9.015 6.574 1.00 0.00 C ATOM 279 NZ LYS 16 8.881 7.856 7.476 1.00 0.00 N ATOM 293 N ASN 17 2.563 10.687 4.175 1.00 0.00 N ATOM 294 CA ASN 17 1.261 11.318 4.002 1.00 0.00 C ATOM 295 C ASN 17 0.519 10.730 2.808 1.00 0.00 C ATOM 296 O ASN 17 0.045 11.461 1.938 1.00 0.00 O ATOM 297 CB ASN 17 1.410 12.821 3.850 1.00 0.00 C ATOM 298 CG ASN 17 2.024 13.465 5.062 1.00 0.00 C ATOM 299 OD1 ASN 17 1.349 13.682 6.075 1.00 0.00 O ATOM 300 ND2 ASN 17 3.294 13.775 4.978 1.00 0.00 N ATOM 307 N CYS 18 0.420 9.405 2.773 1.00 0.00 N ATOM 308 CA CYS 18 -0.273 8.717 1.692 1.00 0.00 C ATOM 309 C CYS 18 -1.311 7.743 2.234 1.00 0.00 C ATOM 310 O CYS 18 -1.169 7.223 3.340 1.00 0.00 O ATOM 311 CB CYS 18 0.721 7.958 0.812 1.00 0.00 C ATOM 312 SG CYS 18 1.878 9.022 -0.083 1.00 0.00 S ATOM 318 N GLU 19 -2.354 7.499 1.447 1.00 0.00 N ATOM 319 CA GLU 19 -3.305 6.435 1.745 1.00 0.00 C ATOM 320 C GLU 19 -2.914 5.137 1.053 1.00 0.00 C ATOM 321 O GLU 19 -2.614 5.125 -0.141 1.00 0.00 O ATOM 322 CB GLU 19 -4.716 6.847 1.319 1.00 0.00 C ATOM 323 CG GLU 19 -5.801 5.841 1.680 1.00 0.00 C ATOM 324 CD GLU 19 -7.170 6.274 1.236 1.00 0.00 C ATOM 325 OE1 GLU 19 -7.285 7.336 0.673 1.00 0.00 O ATOM 326 OE2 GLU 19 -8.105 5.540 1.460 1.00 0.00 O ATOM 333 N VAL 20 -2.918 4.044 1.808 1.00 0.00 N ATOM 334 CA VAL 20 -2.526 2.744 1.278 1.00 0.00 C ATOM 335 C VAL 20 -3.661 1.735 1.397 1.00 0.00 C ATOM 336 O VAL 20 -4.214 1.534 2.479 1.00 0.00 O ATOM 337 CB VAL 20 -1.290 2.212 2.027 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.861 0.867 1.459 1.00 0.00 C ATOM 339 CG2 VAL 20 -0.155 3.221 1.936 1.00 0.00 C ATOM 349 N ARG 21 -4.004 1.103 0.281 1.00 0.00 N ATOM 350 CA ARG 21 -5.101 0.142 0.249 1.00 0.00 C ATOM 351 C ARG 21 -4.640 -1.202 -0.300 1.00 0.00 C ATOM 352 O ARG 21 -4.067 -1.276 -1.386 1.00 0.00 O ATOM 353 CB ARG 21 -6.249 0.667 -0.599 1.00 0.00 C ATOM 354 CG ARG 21 -6.935 1.907 -0.050 1.00 0.00 C ATOM 355 CD ARG 21 -8.120 2.285 -0.863 1.00 0.00 C ATOM 356 NE ARG 21 -8.778 3.472 -0.342 1.00 0.00 N ATOM 357 CZ ARG 21 -9.964 3.942 -0.776 1.00 0.00 C ATOM 358 NH1 ARG 21 -10.607 3.316 -1.738 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.481 5.032 -0.238 1.00 0.00 N ATOM 373 N CYS 22 -4.894 -2.263 0.458 1.00 0.00 N ATOM 374 CA CYS 22 -4.628 -3.619 -0.009 1.00 0.00 C ATOM 375 C CYS 22 -5.652 -4.055 -1.048 1.00 0.00 C ATOM 376 O CYS 22 -6.858 -3.994 -0.808 1.00 0.00 O ATOM 377 CB CYS 22 -4.645 -4.604 1.161 1.00 0.00 C ATOM 378 SG CYS 22 -4.236 -6.304 0.701 1.00 0.00 S ATOM 384 N ASP 23 -5.164 -4.497 -2.202 1.00 0.00 N ATOM 385 CA ASP 23 -6.030 -5.049 -3.238 1.00 0.00 C ATOM 386 C ASP 23 -5.739 -6.526 -3.469 1.00 0.00 C ATOM 387 O ASP 23 -4.762 -6.882 -4.127 1.00 0.00 O ATOM 388 CB ASP 23 -5.856 -4.278 -4.549 1.00 0.00 C ATOM 389 CG ASP 23 -6.726 -4.819 -5.675 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.166 -5.940 -5.573 1.00 0.00 O ATOM 391 OD2 ASP 23 -6.941 -4.108 -6.627 1.00 0.00 O ATOM 396 N GLU 24 -6.594 -7.384 -2.923 1.00 0.00 N ATOM 397 CA GLU 24 -6.351 -8.821 -2.936 1.00 0.00 C ATOM 398 C GLU 24 -7.013 -9.481 -4.139 1.00 0.00 C ATOM 399 O GLU 24 -7.066 -10.707 -4.235 1.00 0.00 O ATOM 400 CB GLU 24 -6.864 -9.462 -1.645 1.00 0.00 C ATOM 401 CG GLU 24 -6.180 -8.962 -0.380 1.00 0.00 C ATOM 402 CD GLU 24 -6.553 -9.756 0.840 1.00 0.00 C ATOM 403 OE1 GLU 24 -6.213 -10.914 0.900 1.00 0.00 O ATOM 404 OE2 GLU 24 -7.180 -9.205 1.714 1.00 0.00 O ATOM 411 N SER 25 -7.518 -8.661 -5.054 1.00 0.00 N ATOM 412 CA SER 25 -8.122 -9.163 -6.283 1.00 0.00 C ATOM 413 C SER 25 -7.196 -8.958 -7.475 1.00 0.00 C ATOM 414 O SER 25 -7.185 -9.758 -8.410 1.00 0.00 O ATOM 415 CB SER 25 -9.446 -8.469 -6.534 1.00 0.00 C ATOM 416 OG SER 25 -9.258 -7.102 -6.780 1.00 0.00 O ATOM 422 N ASN 26 -6.420 -7.880 -7.436 1.00 0.00 N ATOM 423 CA ASN 26 -5.407 -7.629 -8.455 1.00 0.00 C ATOM 424 C ASN 26 -4.007 -7.905 -7.919 1.00 0.00 C ATOM 425 O ASN 26 -3.011 -7.645 -8.594 1.00 0.00 O ATOM 426 CB ASN 26 -5.510 -6.205 -8.971 1.00 0.00 C ATOM 427 CG ASN 26 -6.763 -5.968 -9.766 1.00 0.00 C ATOM 428 OD1 ASN 26 -6.884 -6.424 -10.908 1.00 0.00 O ATOM 429 ND2 ASN 26 -7.700 -5.263 -9.183 1.00 0.00 N ATOM 436 N HIS 27 -3.938 -8.434 -6.703 1.00 0.00 N ATOM 437 CA HIS 27 -2.668 -8.838 -6.113 1.00 0.00 C ATOM 438 C HIS 27 -1.665 -7.692 -6.127 1.00 0.00 C ATOM 439 O HIS 27 -0.537 -7.845 -6.596 1.00 0.00 O ATOM 440 CB HIS 27 -2.085 -10.043 -6.858 1.00 0.00 C ATOM 441 CG HIS 27 -3.024 -11.205 -6.951 1.00 0.00 C ATOM 442 ND1 HIS 27 -3.373 -11.967 -5.857 1.00 0.00 N ATOM 443 CD2 HIS 27 -3.684 -11.736 -8.006 1.00 0.00 C ATOM 444 CE1 HIS 27 -4.211 -12.918 -6.235 1.00 0.00 C ATOM 445 NE2 HIS 27 -4.415 -12.798 -7.534 1.00 0.00 N ATOM 453 N CYS 28 -2.082 -6.541 -5.610 1.00 0.00 N ATOM 454 CA CYS 28 -1.254 -5.341 -5.641 1.00 0.00 C ATOM 455 C CYS 28 -1.607 -4.398 -4.498 1.00 0.00 C ATOM 456 O CYS 28 -2.551 -4.644 -3.747 1.00 0.00 O ATOM 457 CB CYS 28 -1.421 -4.607 -6.971 1.00 0.00 C ATOM 458 SG CYS 28 -3.082 -3.952 -7.250 1.00 0.00 S ATOM 464 N VAL 29 -0.844 -3.318 -4.372 1.00 0.00 N ATOM 465 CA VAL 29 -1.119 -2.299 -3.365 1.00 0.00 C ATOM 466 C VAL 29 -1.318 -0.931 -4.006 1.00 0.00 C ATOM 467 O VAL 29 -0.492 -0.480 -4.799 1.00 0.00 O ATOM 468 CB VAL 29 0.038 -2.224 -2.351 1.00 0.00 C ATOM 469 CG1 VAL 29 -0.230 -1.141 -1.317 1.00 0.00 C ATOM 470 CG2 VAL 29 0.228 -3.576 -1.681 1.00 0.00 C ATOM 480 N GLU 30 -2.420 -0.275 -3.658 1.00 0.00 N ATOM 481 CA GLU 30 -2.717 1.054 -4.177 1.00 0.00 C ATOM 482 C GLU 30 -2.272 2.138 -3.204 1.00 0.00 C ATOM 483 O GLU 30 -2.638 2.119 -2.030 1.00 0.00 O ATOM 484 CB GLU 30 -4.215 1.193 -4.461 1.00 0.00 C ATOM 485 CG GLU 30 -4.625 2.548 -5.020 1.00 0.00 C ATOM 486 CD GLU 30 -6.104 2.656 -5.264 1.00 0.00 C ATOM 487 OE1 GLU 30 -6.791 1.680 -5.084 1.00 0.00 O ATOM 488 OE2 GLU 30 -6.549 3.719 -5.633 1.00 0.00 O ATOM 495 N VAL 31 -1.478 3.080 -3.700 1.00 0.00 N ATOM 496 CA VAL 31 -0.991 4.183 -2.879 1.00 0.00 C ATOM 497 C VAL 31 -1.262 5.526 -3.543 1.00 0.00 C ATOM 498 O VAL 31 -0.977 5.713 -4.726 1.00 0.00 O ATOM 499 CB VAL 31 0.521 4.033 -2.625 1.00 0.00 C ATOM 500 CG1 VAL 31 1.022 5.149 -1.722 1.00 0.00 C ATOM 501 CG2 VAL 31 0.811 2.672 -2.014 1.00 0.00 C ATOM 511 N ARG 32 -1.813 6.459 -2.775 1.00 0.00 N ATOM 512 CA ARG 32 -2.047 7.814 -3.263 1.00 0.00 C ATOM 513 C ARG 32 -1.781 8.846 -2.175 1.00 0.00 C ATOM 514 O ARG 32 -1.973 8.574 -0.989 1.00 0.00 O ATOM 515 CB ARG 32 -3.476 7.963 -3.763 1.00 0.00 C ATOM 516 CG ARG 32 -4.545 7.827 -2.691 1.00 0.00 C ATOM 517 CD ARG 32 -5.911 7.981 -3.255 1.00 0.00 C ATOM 518 NE ARG 32 -6.934 7.920 -2.224 1.00 0.00 N ATOM 519 CZ ARG 32 -8.252 8.094 -2.443 1.00 0.00 C ATOM 520 NH1 ARG 32 -8.689 8.339 -3.658 1.00 0.00 N ATOM 521 NH2 ARG 32 -9.104 8.020 -1.435 1.00 0.00 N ATOM 535 N CYS 33 -1.340 10.030 -2.583 1.00 0.00 N ATOM 536 CA CYS 33 -1.042 11.103 -1.641 1.00 0.00 C ATOM 537 C CYS 33 -2.320 11.717 -1.085 1.00 0.00 C ATOM 538 O CYS 33 -3.321 11.839 -1.790 1.00 0.00 O ATOM 539 CB CYS 33 -0.211 12.195 -2.316 1.00 0.00 C ATOM 540 SG CYS 33 1.429 11.651 -2.848 1.00 0.00 S ATOM 546 N SER 34 -2.279 12.101 0.187 1.00 0.00 N ATOM 547 CA SER 34 -3.408 12.774 0.820 1.00 0.00 C ATOM 548 C SER 34 -2.940 13.721 1.917 1.00 0.00 C ATOM 549 O SER 34 -1.749 14.008 2.037 1.00 0.00 O ATOM 550 CB SER 34 -4.367 11.752 1.398 1.00 0.00 C ATOM 551 OG SER 34 -5.570 12.356 1.787 1.00 0.00 O ATOM 557 N ASP 35 -3.885 14.205 2.717 1.00 0.00 N ATOM 558 CA ASP 35 -3.567 15.100 3.823 1.00 0.00 C ATOM 559 C ASP 35 -2.970 14.335 4.997 1.00 0.00 C ATOM 560 O ASP 35 -2.084 14.835 5.690 1.00 0.00 O ATOM 561 CB ASP 35 -4.819 15.852 4.281 1.00 0.00 C ATOM 562 CG ASP 35 -5.327 16.845 3.244 1.00 0.00 C ATOM 563 OD1 ASP 35 -4.604 17.126 2.317 1.00 0.00 O ATOM 564 OD2 ASP 35 -6.431 17.311 3.387 1.00 0.00 O ATOM 569 N THR 36 -3.459 13.118 5.215 1.00 0.00 N ATOM 570 CA THR 36 -2.975 12.283 6.307 1.00 0.00 C ATOM 571 C THR 36 -2.620 10.886 5.816 1.00 0.00 C ATOM 572 O THR 36 -2.880 10.537 4.665 1.00 0.00 O ATOM 573 CB THR 36 -4.020 12.185 7.434 1.00 0.00 C ATOM 574 OG1 THR 36 -5.179 11.488 6.957 1.00 0.00 O ATOM 575 CG2 THR 36 -4.428 13.573 7.906 1.00 0.00 C ATOM 583 N LYS 37 -2.024 10.089 6.696 1.00 0.00 N ATOM 584 CA LYS 37 -1.649 8.720 6.360 1.00 0.00 C ATOM 585 C LYS 37 -2.663 7.722 6.903 1.00 0.00 C ATOM 586 O LYS 37 -3.097 7.825 8.051 1.00 0.00 O ATOM 587 CB LYS 37 -0.254 8.399 6.900 1.00 0.00 C ATOM 588 CG LYS 37 0.268 7.023 6.511 1.00 0.00 C ATOM 589 CD LYS 37 1.769 6.915 6.744 1.00 0.00 C ATOM 590 CE LYS 37 2.084 6.640 8.208 1.00 0.00 C ATOM 591 NZ LYS 37 3.538 6.412 8.429 1.00 0.00 N ATOM 605 N TYR 38 -3.037 6.756 6.072 1.00 0.00 N ATOM 606 CA TYR 38 -3.928 5.681 6.497 1.00 0.00 C ATOM 607 C TYR 38 -3.697 4.419 5.676 1.00 0.00 C ATOM 608 O TYR 38 -3.595 4.473 4.451 1.00 0.00 O ATOM 609 CB TYR 38 -5.389 6.124 6.392 1.00 0.00 C ATOM 610 CG TYR 38 -6.382 5.035 6.734 1.00 0.00 C ATOM 611 CD1 TYR 38 -6.671 4.752 8.060 1.00 0.00 C ATOM 612 CD2 TYR 38 -7.003 4.319 5.721 1.00 0.00 C ATOM 613 CE1 TYR 38 -7.578 3.757 8.372 1.00 0.00 C ATOM 614 CE2 TYR 38 -7.910 3.325 6.033 1.00 0.00 C ATOM 615 CZ TYR 38 -8.197 3.043 7.353 1.00 0.00 C ATOM 616 OH TYR 38 -9.101 2.053 7.663 1.00 0.00 O ATOM 626 N THR 39 -3.618 3.282 6.359 1.00 0.00 N ATOM 627 CA THR 39 -3.357 2.008 5.699 1.00 0.00 C ATOM 628 C THR 39 -4.466 1.003 5.984 1.00 0.00 C ATOM 629 O THR 39 -4.817 0.763 7.138 1.00 0.00 O ATOM 630 CB THR 39 -2.003 1.423 6.138 1.00 0.00 C ATOM 631 OG1 THR 39 -0.952 2.343 5.813 1.00 0.00 O ATOM 632 CG2 THR 39 -1.743 0.096 5.440 1.00 0.00 C ATOM 640 N LEU 40 -5.014 0.418 4.924 1.00 0.00 N ATOM 641 CA LEU 40 -6.026 -0.623 5.061 1.00 0.00 C ATOM 642 C LEU 40 -5.499 -1.970 4.586 1.00 0.00 C ATOM 643 O LEU 40 -5.250 -2.166 3.396 1.00 0.00 O ATOM 644 CB LEU 40 -7.282 -0.248 4.265 1.00 0.00 C ATOM 645 CG LEU 40 -8.409 -1.288 4.272 1.00 0.00 C ATOM 646 CD1 LEU 40 -8.919 -1.475 5.695 1.00 0.00 C ATOM 647 CD2 LEU 40 -9.527 -0.832 3.346 1.00 0.00 C ATOM 659 N CYS 41 -5.331 -2.898 5.522 1.00 0.00 N ATOM 660 CA CYS 41 -4.764 -4.205 5.212 1.00 0.00 C ATOM 661 C CYS 41 -4.830 -5.134 6.418 1.00 0.00 C ATOM 662 O CYS 41 -5.856 -5.696 6.687 1.00 0.00 O ATOM 663 OXT CYS 41 -3.857 -5.302 7.099 1.00 0.00 O ATOM 664 CB CYS 41 -3.311 -4.069 4.759 1.00 0.00 C ATOM 665 SG CYS 41 -2.189 -3.473 6.048 1.00 0.00 S TER END