####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS426_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS426_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.41 1.41 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.41 1.41 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 2 - 33 1.00 1.46 LCS_AVERAGE: 66.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 6 10 27 36 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 32 41 41 10 20 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 32 41 41 10 24 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 32 41 41 10 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 32 41 41 4 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 32 41 41 3 3 22 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 32 41 41 8 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 32 41 41 7 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 32 41 41 10 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 32 41 41 6 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 32 41 41 6 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 32 41 41 5 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 32 41 41 6 15 33 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 32 41 41 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 32 41 41 11 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 32 41 41 13 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 32 41 41 12 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 32 41 41 6 24 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 18 41 41 3 4 12 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 14 41 41 3 4 10 31 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 14 41 41 11 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 14 41 41 11 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 41 41 4 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 41 41 4 11 32 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 41 41 8 24 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 4 22 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 88.70 ( 66.09 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 25 34 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 36.59 60.98 82.93 92.68 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.29 0.59 0.90 1.06 1.13 1.21 1.21 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 GDT RMS_ALL_AT 1.66 1.51 1.45 1.43 1.42 1.43 1.43 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.563 0 0.171 0.788 7.092 3.182 2.121 6.285 LGA Q 2 Q 2 1.421 0 0.225 1.354 3.966 70.000 48.081 3.791 LGA E 3 E 3 0.852 0 0.053 0.708 4.100 81.818 50.303 4.100 LGA T 4 T 4 0.630 0 0.029 1.158 2.504 90.909 72.987 2.504 LGA R 5 R 5 0.419 0 0.018 0.402 3.769 95.455 59.835 3.769 LGA K 6 K 6 0.510 0 0.018 1.267 5.977 86.364 56.364 5.901 LGA K 7 K 7 0.479 0 0.011 1.155 3.666 100.000 69.697 3.666 LGA C 8 C 8 0.341 0 0.013 0.026 0.557 90.909 93.939 0.230 LGA T 9 T 9 0.869 0 0.018 0.104 1.513 73.636 70.390 0.994 LGA E 10 E 10 1.134 0 0.019 0.485 2.139 69.545 61.010 1.435 LGA M 11 M 11 0.892 0 0.074 0.947 5.261 81.818 55.909 5.261 LGA K 12 K 12 1.018 0 0.050 0.624 2.122 69.545 58.384 2.122 LGA K 13 K 13 1.106 0 0.038 0.592 1.956 65.455 67.475 0.895 LGA K 14 K 14 0.900 0 0.062 0.585 2.566 81.818 77.778 2.566 LGA F 15 F 15 1.248 0 0.112 0.337 2.900 61.818 54.876 2.660 LGA K 16 K 16 2.681 0 0.642 1.095 4.240 28.636 23.838 4.240 LGA N 17 N 17 1.587 0 0.213 0.553 3.724 65.909 43.409 3.724 LGA C 18 C 18 1.228 0 0.034 0.920 4.125 65.455 55.455 4.125 LGA E 19 E 19 0.855 0 0.157 0.308 1.498 86.364 78.384 1.315 LGA V 20 V 20 1.254 0 0.076 0.096 1.543 61.818 61.299 1.506 LGA R 21 R 21 1.216 0 0.034 1.228 7.014 69.545 37.355 6.496 LGA C 22 C 22 1.483 0 0.238 0.963 4.254 55.000 48.485 4.254 LGA D 23 D 23 1.783 0 0.343 1.132 4.747 42.727 32.500 3.407 LGA E 24 E 24 0.232 0 0.169 0.634 4.074 91.364 58.384 4.074 LGA S 25 S 25 0.832 0 0.021 0.075 1.208 82.273 76.667 1.208 LGA N 26 N 26 0.976 0 0.142 1.188 5.745 86.364 54.091 5.745 LGA H 27 H 27 0.585 0 0.091 0.257 1.122 86.364 82.182 1.056 LGA C 28 C 28 0.409 0 0.077 0.107 0.972 95.455 93.939 0.696 LGA V 29 V 29 0.452 0 0.066 0.099 0.748 95.455 89.610 0.747 LGA E 30 E 30 0.344 0 0.045 0.598 3.456 100.000 62.626 3.192 LGA V 31 V 31 0.581 0 0.095 1.202 3.323 95.455 76.104 1.583 LGA R 32 R 32 0.402 0 0.071 1.155 7.781 90.909 52.562 7.781 LGA C 33 C 33 0.830 0 0.536 0.992 3.782 60.909 57.576 1.696 LGA S 34 S 34 2.275 0 0.508 0.484 3.327 36.364 31.818 3.284 LGA D 35 D 35 3.022 0 0.196 1.050 8.343 33.182 17.273 8.343 LGA T 36 T 36 1.197 0 0.054 0.150 1.878 70.000 63.896 1.878 LGA K 37 K 37 0.527 0 0.045 1.177 2.854 78.636 59.394 2.460 LGA Y 38 Y 38 1.527 0 0.053 1.340 5.555 74.545 43.030 5.555 LGA T 39 T 39 1.813 0 0.176 1.101 4.395 39.545 31.429 4.395 LGA L 40 L 40 1.001 0 0.150 0.920 3.899 77.727 65.000 3.899 LGA C 41 C 41 1.580 0 0.316 0.953 3.366 54.545 48.571 3.366 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.409 1.513 2.372 71.874 57.171 29.534 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.41 88.415 94.523 2.716 LGA_LOCAL RMSD: 1.409 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.409 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.409 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.608417 * X + -0.159811 * Y + -0.777360 * Z + 1.965848 Y_new = 0.521641 * X + -0.818725 * Y + -0.239959 * Z + 1.134870 Z_new = -0.598096 * X + -0.551498 * Y + 0.581490 * Z + 2.872093 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.432833 0.641123 -0.758933 [DEG: 139.3911 36.7336 -43.4837 ] ZXZ: -1.271391 0.950237 -2.315683 [DEG: -72.8454 54.4446 -132.6788 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS426_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS426_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.41 94.523 1.41 REMARK ---------------------------------------------------------- MOLECULE T0955TS426_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -4.899 -12.330 1.024 1.00 0.70 N ATOM 2 CA SER 1 -3.528 -12.274 0.517 1.00 0.61 C ATOM 3 C SER 1 -2.535 -11.656 1.489 1.00 0.57 C ATOM 4 O SER 1 -2.432 -10.427 1.619 1.00 0.52 O ATOM 5 CB SER 1 -3.494 -11.515 -0.789 1.00 0.92 C ATOM 6 OG SER 1 -2.171 -11.415 -1.291 1.00 0.92 O ATOM 14 N GLN 2 -1.769 -12.516 2.151 1.00 0.61 N ATOM 15 CA GLN 2 -0.788 -12.060 3.119 1.00 0.61 C ATOM 16 C GLN 2 0.334 -11.283 2.453 1.00 0.50 C ATOM 17 O GLN 2 0.820 -10.301 3.015 1.00 0.47 O ATOM 18 CB GLN 2 -0.219 -13.251 3.893 1.00 0.92 C ATOM 19 CG GLN 2 -1.234 -13.934 4.814 1.00 0.92 C ATOM 20 CD GLN 2 -2.128 -14.951 4.095 1.00 0.92 C ATOM 21 OE1 GLN 2 -2.263 -14.946 2.858 1.00 0.92 O ATOM 22 NE2 GLN 2 -2.745 -15.828 4.868 1.00 0.92 N ATOM 31 N GLU 3 0.729 -11.694 1.253 1.00 0.48 N ATOM 32 CA GLU 3 1.809 -11.021 0.556 1.00 0.42 C ATOM 33 C GLU 3 1.404 -9.604 0.184 1.00 0.32 C ATOM 34 O GLU 3 2.206 -8.669 0.303 1.00 0.29 O ATOM 35 CB GLU 3 2.203 -11.815 -0.686 1.00 0.63 C ATOM 36 CG GLU 3 2.830 -13.175 -0.371 1.00 0.63 C ATOM 37 CD GLU 3 1.804 -14.218 -0.012 1.00 0.63 C ATOM 38 OE1 GLU 3 0.630 -13.933 -0.156 1.00 0.63 O ATOM 39 OE2 GLU 3 2.183 -15.279 0.414 1.00 0.63 O ATOM 46 N THR 4 0.148 -9.437 -0.243 1.00 0.32 N ATOM 47 CA THR 4 -0.332 -8.127 -0.636 1.00 0.26 C ATOM 48 C THR 4 -0.313 -7.226 0.606 1.00 0.24 C ATOM 49 O THR 4 0.120 -6.071 0.523 1.00 0.21 O ATOM 50 CB THR 4 -1.748 -8.200 -1.237 1.00 0.39 C ATOM 51 OG1 THR 4 -1.751 -9.111 -2.344 1.00 0.39 O ATOM 52 CG2 THR 4 -2.111 -6.817 -1.824 1.00 0.39 C ATOM 60 N ARG 5 -0.775 -7.755 1.759 1.00 0.30 N ATOM 61 CA ARG 5 -0.786 -6.987 3.004 1.00 0.35 C ATOM 62 C ARG 5 0.623 -6.581 3.449 1.00 0.33 C ATOM 63 O ARG 5 0.807 -5.484 3.997 1.00 0.34 O ATOM 64 CB ARG 5 -1.468 -7.748 4.130 1.00 0.52 C ATOM 65 CG ARG 5 -2.981 -7.874 3.998 1.00 0.52 C ATOM 66 CD ARG 5 -3.575 -8.615 5.133 1.00 0.52 C ATOM 67 NE ARG 5 -5.021 -8.711 5.013 1.00 0.52 N ATOM 68 CZ ARG 5 -5.861 -9.239 5.919 1.00 0.52 C ATOM 69 NH1 ARG 5 -5.428 -9.729 7.071 1.00 0.52 N ATOM 70 NH2 ARG 5 -7.141 -9.248 5.614 1.00 0.52 N ATOM 84 N LYS 6 1.615 -7.459 3.254 1.00 0.33 N ATOM 85 CA LYS 6 2.986 -7.107 3.615 1.00 0.35 C ATOM 86 C LYS 6 3.470 -5.914 2.789 1.00 0.27 C ATOM 87 O LYS 6 4.083 -4.986 3.337 1.00 0.28 O ATOM 88 CB LYS 6 3.927 -8.300 3.427 1.00 0.52 C ATOM 89 CG LYS 6 3.744 -9.421 4.452 1.00 0.52 C ATOM 90 CD LYS 6 4.666 -10.604 4.164 1.00 0.52 C ATOM 91 CE LYS 6 4.444 -11.738 5.158 1.00 0.52 C ATOM 92 NZ LYS 6 5.309 -12.919 4.861 1.00 0.52 N ATOM 106 N LYS 7 3.148 -5.913 1.484 1.00 0.22 N ATOM 107 CA LYS 7 3.532 -4.810 0.604 1.00 0.21 C ATOM 108 C LYS 7 2.747 -3.542 0.988 1.00 0.20 C ATOM 109 O LYS 7 3.274 -2.429 0.890 1.00 0.26 O ATOM 110 CB LYS 7 3.353 -5.208 -0.873 1.00 0.32 C ATOM 111 CG LYS 7 4.275 -6.399 -1.360 1.00 0.32 C ATOM 112 CD LYS 7 5.813 -6.134 -1.265 1.00 0.32 C ATOM 113 CE LYS 7 6.359 -5.284 -2.401 1.00 0.32 C ATOM 114 NZ LYS 7 7.825 -5.000 -2.210 1.00 0.32 N ATOM 128 N CYS 8 1.494 -3.702 1.435 1.00 0.22 N ATOM 129 CA CYS 8 0.689 -2.577 1.905 1.00 0.26 C ATOM 130 C CYS 8 1.376 -1.902 3.078 1.00 0.25 C ATOM 131 O CYS 8 1.480 -0.671 3.111 1.00 0.28 O ATOM 132 CB CYS 8 -0.717 -3.012 2.295 1.00 0.39 C ATOM 133 SG CYS 8 -1.776 -1.667 2.849 1.00 0.39 S ATOM 139 N THR 9 1.860 -2.702 4.031 1.00 0.23 N ATOM 140 CA THR 9 2.561 -2.167 5.190 1.00 0.24 C ATOM 141 C THR 9 3.804 -1.393 4.755 1.00 0.23 C ATOM 142 O THR 9 4.045 -0.284 5.252 1.00 0.25 O ATOM 143 CB THR 9 2.954 -3.288 6.176 1.00 0.36 C ATOM 144 OG1 THR 9 1.767 -3.928 6.669 1.00 0.36 O ATOM 145 CG2 THR 9 3.735 -2.698 7.351 1.00 0.36 C ATOM 153 N GLU 10 4.596 -1.967 3.835 1.00 0.23 N ATOM 154 CA GLU 10 5.796 -1.298 3.335 1.00 0.26 C ATOM 155 C GLU 10 5.468 0.069 2.751 1.00 0.23 C ATOM 156 O GLU 10 6.140 1.066 3.050 1.00 0.23 O ATOM 157 CB GLU 10 6.463 -2.134 2.235 1.00 0.39 C ATOM 158 CG GLU 10 7.730 -1.512 1.628 1.00 0.39 C ATOM 159 CD GLU 10 8.320 -2.329 0.492 1.00 0.39 C ATOM 160 OE1 GLU 10 7.845 -3.416 0.241 1.00 0.39 O ATOM 161 OE2 GLU 10 9.253 -1.858 -0.130 1.00 0.39 O ATOM 168 N MET 11 4.428 0.119 1.918 1.00 0.23 N ATOM 169 CA MET 11 4.028 1.355 1.284 1.00 0.24 C ATOM 170 C MET 11 3.571 2.392 2.295 1.00 0.24 C ATOM 171 O MET 11 3.928 3.566 2.184 1.00 0.27 O ATOM 172 CB MET 11 2.923 1.079 0.297 1.00 0.36 C ATOM 173 CG MET 11 2.561 2.228 -0.549 1.00 0.36 C ATOM 174 SD MET 11 1.345 1.817 -1.708 1.00 0.36 S ATOM 175 CE MET 11 2.149 1.047 -3.009 1.00 0.36 C ATOM 185 N LYS 12 2.763 1.978 3.273 1.00 0.23 N ATOM 186 CA LYS 12 2.270 2.902 4.283 1.00 0.27 C ATOM 187 C LYS 12 3.412 3.528 5.069 1.00 0.31 C ATOM 188 O LYS 12 3.394 4.727 5.352 1.00 0.40 O ATOM 189 CB LYS 12 1.296 2.189 5.222 1.00 0.41 C ATOM 190 CG LYS 12 0.665 3.089 6.283 1.00 0.41 C ATOM 191 CD LYS 12 -0.352 2.321 7.123 1.00 0.41 C ATOM 192 CE LYS 12 -0.959 3.208 8.207 1.00 0.41 C ATOM 193 NZ LYS 12 -1.954 2.470 9.041 1.00 0.41 N ATOM 207 N LYS 13 4.403 2.715 5.450 1.00 0.28 N ATOM 208 CA LYS 13 5.542 3.227 6.196 1.00 0.32 C ATOM 209 C LYS 13 6.417 4.187 5.387 1.00 0.32 C ATOM 210 O LYS 13 6.859 5.210 5.915 1.00 0.38 O ATOM 211 CB LYS 13 6.398 2.078 6.727 1.00 0.48 C ATOM 212 CG LYS 13 5.767 1.286 7.871 1.00 0.48 C ATOM 213 CD LYS 13 6.683 0.153 8.324 1.00 0.48 C ATOM 214 CE LYS 13 6.105 -0.599 9.519 1.00 0.48 C ATOM 215 NZ LYS 13 6.981 -1.731 9.943 1.00 0.48 N ATOM 229 N LYS 14 6.677 3.867 4.112 1.00 0.28 N ATOM 230 CA LYS 14 7.514 4.737 3.289 1.00 0.31 C ATOM 231 C LYS 14 6.818 6.041 2.888 1.00 0.31 C ATOM 232 O LYS 14 7.390 7.133 3.004 1.00 0.40 O ATOM 233 CB LYS 14 8.003 3.968 2.063 1.00 0.46 C ATOM 234 CG LYS 14 9.052 2.912 2.411 1.00 0.46 C ATOM 235 CD LYS 14 9.511 2.103 1.205 1.00 0.46 C ATOM 236 CE LYS 14 10.648 1.154 1.604 1.00 0.46 C ATOM 237 NZ LYS 14 11.079 0.261 0.488 1.00 0.46 N ATOM 251 N PHE 15 5.562 5.959 2.470 1.00 0.32 N ATOM 252 CA PHE 15 4.830 7.148 2.073 1.00 0.37 C ATOM 253 C PHE 15 4.125 7.715 3.299 1.00 0.49 C ATOM 254 O PHE 15 2.910 7.612 3.453 1.00 0.41 O ATOM 255 CB PHE 15 3.846 6.832 0.949 1.00 0.55 C ATOM 256 CG PHE 15 4.470 6.485 -0.359 1.00 0.55 C ATOM 257 CD1 PHE 15 4.669 5.173 -0.711 1.00 0.55 C ATOM 258 CD2 PHE 15 4.847 7.471 -1.244 1.00 0.55 C ATOM 259 CE1 PHE 15 5.232 4.842 -1.922 1.00 0.55 C ATOM 260 CE2 PHE 15 5.413 7.151 -2.447 1.00 0.55 C ATOM 261 CZ PHE 15 5.605 5.833 -2.789 1.00 0.55 C ATOM 271 N LYS 16 4.911 8.288 4.185 1.00 0.77 N ATOM 272 CA LYS 16 4.397 8.754 5.462 1.00 0.95 C ATOM 273 C LYS 16 3.160 9.648 5.299 1.00 0.90 C ATOM 274 O LYS 16 3.163 10.596 4.513 1.00 1.80 O ATOM 275 CB LYS 16 5.508 9.480 6.225 1.00 1.42 C ATOM 276 CG LYS 16 5.137 9.939 7.632 1.00 1.42 C ATOM 277 CD LYS 16 6.338 10.554 8.347 1.00 1.42 C ATOM 278 CE LYS 16 5.982 10.987 9.765 1.00 1.42 C ATOM 279 NZ LYS 16 7.159 11.573 10.481 1.00 1.42 N ATOM 293 N ASN 17 2.113 9.323 6.072 1.00 0.38 N ATOM 294 CA ASN 17 0.800 9.992 6.140 1.00 0.50 C ATOM 295 C ASN 17 -0.074 9.897 4.874 1.00 0.40 C ATOM 296 O ASN 17 -1.069 10.613 4.747 1.00 0.50 O ATOM 297 CB ASN 17 0.961 11.453 6.521 1.00 0.75 C ATOM 298 CG ASN 17 1.597 11.645 7.863 1.00 0.75 C ATOM 299 OD1 ASN 17 1.412 10.844 8.790 1.00 0.75 O ATOM 300 ND2 ASN 17 2.343 12.712 7.993 1.00 0.75 N ATOM 307 N CYS 18 0.252 8.976 3.980 1.00 0.28 N ATOM 308 CA CYS 18 -0.531 8.742 2.766 1.00 0.26 C ATOM 309 C CYS 18 -1.681 7.755 2.973 1.00 0.26 C ATOM 310 O CYS 18 -1.732 7.039 3.978 1.00 0.29 O ATOM 311 CB CYS 18 0.326 8.112 1.722 1.00 0.39 C ATOM 312 SG CYS 18 0.633 6.408 2.139 1.00 0.39 S ATOM 318 N GLU 19 -2.587 7.682 1.990 1.00 0.26 N ATOM 319 CA GLU 19 -3.658 6.683 2.008 1.00 0.28 C ATOM 320 C GLU 19 -3.283 5.435 1.206 1.00 0.26 C ATOM 321 O GLU 19 -3.042 5.519 -0.000 1.00 0.25 O ATOM 322 CB GLU 19 -4.950 7.273 1.442 1.00 0.42 C ATOM 323 CG GLU 19 -6.129 6.294 1.380 1.00 0.42 C ATOM 324 CD GLU 19 -7.389 6.918 0.850 1.00 0.42 C ATOM 325 OE1 GLU 19 -7.489 8.118 0.856 1.00 0.42 O ATOM 326 OE2 GLU 19 -8.242 6.184 0.388 1.00 0.42 O ATOM 333 N VAL 20 -3.276 4.257 1.847 1.00 0.27 N ATOM 334 CA VAL 20 -2.887 3.037 1.125 1.00 0.27 C ATOM 335 C VAL 20 -3.998 2.002 1.155 1.00 0.30 C ATOM 336 O VAL 20 -4.552 1.703 2.215 1.00 0.31 O ATOM 337 CB VAL 20 -1.630 2.358 1.722 1.00 0.41 C ATOM 338 CG1 VAL 20 -1.244 1.125 0.883 1.00 0.41 C ATOM 339 CG2 VAL 20 -0.539 3.297 1.781 1.00 0.41 C ATOM 349 N ARG 21 -4.309 1.446 -0.011 1.00 0.33 N ATOM 350 CA ARG 21 -5.327 0.412 -0.096 1.00 0.36 C ATOM 351 C ARG 21 -4.730 -0.920 -0.578 1.00 0.32 C ATOM 352 O ARG 21 -3.902 -0.979 -1.497 1.00 0.33 O ATOM 353 CB ARG 21 -6.461 0.872 -1.000 1.00 0.54 C ATOM 354 CG ARG 21 -7.140 2.204 -0.554 1.00 0.54 C ATOM 355 CD ARG 21 -7.972 2.053 0.683 1.00 0.54 C ATOM 356 NE ARG 21 -8.569 3.321 1.098 1.00 0.54 N ATOM 357 CZ ARG 21 -9.414 3.494 2.136 1.00 0.54 C ATOM 358 NH1 ARG 21 -9.796 2.479 2.890 1.00 0.54 N ATOM 359 NH2 ARG 21 -9.850 4.717 2.376 1.00 0.54 N ATOM 373 N CYS 22 -5.180 -2.003 0.061 1.00 0.34 N ATOM 374 CA CYS 22 -4.699 -3.358 -0.215 1.00 0.40 C ATOM 375 C CYS 22 -5.658 -4.221 -1.038 1.00 0.39 C ATOM 376 O CYS 22 -6.628 -4.788 -0.517 1.00 0.51 O ATOM 377 CB CYS 22 -4.460 -4.046 1.130 1.00 0.60 C ATOM 378 SG CYS 22 -3.859 -5.706 1.050 1.00 0.60 S ATOM 384 N ASP 23 -5.371 -4.376 -2.322 1.00 0.34 N ATOM 385 CA ASP 23 -6.257 -5.144 -3.174 1.00 0.42 C ATOM 386 C ASP 23 -5.883 -6.600 -3.103 1.00 0.42 C ATOM 387 O ASP 23 -5.014 -7.082 -3.839 1.00 0.48 O ATOM 388 CB ASP 23 -6.222 -4.660 -4.627 1.00 0.63 C ATOM 389 CG ASP 23 -7.199 -5.421 -5.567 1.00 0.63 C ATOM 390 OD1 ASP 23 -7.665 -6.514 -5.218 1.00 0.63 O ATOM 391 OD2 ASP 23 -7.453 -4.931 -6.647 1.00 0.63 O ATOM 396 N GLU 24 -6.583 -7.323 -2.242 1.00 0.40 N ATOM 397 CA GLU 24 -6.271 -8.728 -1.999 1.00 0.44 C ATOM 398 C GLU 24 -6.850 -9.672 -3.065 1.00 0.54 C ATOM 399 O GLU 24 -6.726 -10.894 -2.946 1.00 0.80 O ATOM 400 CB GLU 24 -6.770 -9.164 -0.621 1.00 0.66 C ATOM 401 CG GLU 24 -6.093 -8.467 0.547 1.00 0.66 C ATOM 402 CD GLU 24 -6.526 -9.011 1.879 1.00 0.66 C ATOM 403 OE1 GLU 24 -6.421 -10.213 2.053 1.00 0.66 O ATOM 404 OE2 GLU 24 -6.935 -8.247 2.734 1.00 0.66 O ATOM 411 N SER 25 -7.541 -9.121 -4.073 1.00 0.48 N ATOM 412 CA SER 25 -8.105 -9.958 -5.129 1.00 0.60 C ATOM 413 C SER 25 -7.181 -9.960 -6.342 1.00 0.51 C ATOM 414 O SER 25 -6.923 -11.007 -6.941 1.00 0.60 O ATOM 415 CB SER 25 -9.482 -9.460 -5.541 1.00 0.90 C ATOM 416 OG SER 25 -10.421 -9.591 -4.499 1.00 0.90 O ATOM 422 N ASN 26 -6.635 -8.783 -6.673 1.00 0.43 N ATOM 423 CA ASN 26 -5.739 -8.648 -7.826 1.00 0.45 C ATOM 424 C ASN 26 -4.281 -8.567 -7.388 1.00 0.35 C ATOM 425 O ASN 26 -3.386 -8.302 -8.190 1.00 0.47 O ATOM 426 CB ASN 26 -6.097 -7.420 -8.637 1.00 0.68 C ATOM 427 CG ASN 26 -7.448 -7.520 -9.289 1.00 0.68 C ATOM 428 OD1 ASN 26 -7.676 -8.343 -10.189 1.00 0.68 O ATOM 429 ND2 ASN 26 -8.358 -6.688 -8.844 1.00 0.68 N ATOM 436 N HIS 27 -4.056 -8.793 -6.103 1.00 0.27 N ATOM 437 CA HIS 27 -2.742 -8.760 -5.461 1.00 0.30 C ATOM 438 C HIS 27 -1.964 -7.477 -5.731 1.00 0.31 C ATOM 439 O HIS 27 -0.793 -7.503 -6.115 1.00 0.52 O ATOM 440 CB HIS 27 -1.935 -9.979 -5.876 1.00 0.45 C ATOM 441 CG HIS 27 -2.633 -11.236 -5.514 1.00 0.45 C ATOM 442 ND1 HIS 27 -2.717 -11.711 -4.207 1.00 0.45 N ATOM 443 CD2 HIS 27 -3.326 -12.107 -6.279 1.00 0.45 C ATOM 444 CE1 HIS 27 -3.423 -12.839 -4.213 1.00 0.45 C ATOM 445 NE2 HIS 27 -3.799 -13.089 -5.453 1.00 0.45 N ATOM 453 N CYS 28 -2.633 -6.344 -5.583 1.00 0.24 N ATOM 454 CA CYS 28 -2.008 -5.048 -5.836 1.00 0.29 C ATOM 455 C CYS 28 -2.087 -4.091 -4.653 1.00 0.27 C ATOM 456 O CYS 28 -3.066 -4.072 -3.904 1.00 0.43 O ATOM 457 CB CYS 28 -2.664 -4.393 -7.047 1.00 0.43 C ATOM 458 SG CYS 28 -2.478 -5.336 -8.573 1.00 0.43 S ATOM 464 N VAL 29 -1.093 -3.233 -4.524 1.00 0.20 N ATOM 465 CA VAL 29 -1.127 -2.224 -3.485 1.00 0.20 C ATOM 466 C VAL 29 -1.052 -0.839 -4.121 1.00 0.19 C ATOM 467 O VAL 29 -0.162 -0.569 -4.937 1.00 0.21 O ATOM 468 CB VAL 29 0.047 -2.418 -2.535 1.00 0.30 C ATOM 469 CG1 VAL 29 0.016 -1.408 -1.487 1.00 0.30 C ATOM 470 CG2 VAL 29 0.020 -3.787 -1.939 1.00 0.30 C ATOM 480 N GLU 30 -1.976 0.049 -3.748 1.00 0.23 N ATOM 481 CA GLU 30 -1.962 1.399 -4.325 1.00 0.29 C ATOM 482 C GLU 30 -1.991 2.509 -3.269 1.00 0.25 C ATOM 483 O GLU 30 -2.682 2.396 -2.248 1.00 0.29 O ATOM 484 CB GLU 30 -3.166 1.586 -5.260 1.00 0.43 C ATOM 485 CG GLU 30 -3.231 0.622 -6.462 1.00 0.43 C ATOM 486 CD GLU 30 -4.383 0.949 -7.406 1.00 0.43 C ATOM 487 OE1 GLU 30 -5.269 1.655 -6.991 1.00 0.43 O ATOM 488 OE2 GLU 30 -4.331 0.573 -8.569 1.00 0.43 O ATOM 495 N VAL 31 -1.275 3.612 -3.549 1.00 0.20 N ATOM 496 CA VAL 31 -1.256 4.779 -2.659 1.00 0.19 C ATOM 497 C VAL 31 -1.549 6.114 -3.284 1.00 0.18 C ATOM 498 O VAL 31 -1.023 6.464 -4.343 1.00 0.19 O ATOM 499 CB VAL 31 0.100 4.914 -1.920 1.00 0.29 C ATOM 500 CG1 VAL 31 1.238 4.975 -2.854 1.00 0.29 C ATOM 501 CG2 VAL 31 0.182 6.144 -1.145 1.00 0.29 C ATOM 511 N ARG 32 -2.349 6.895 -2.563 1.00 0.19 N ATOM 512 CA ARG 32 -2.613 8.276 -2.917 1.00 0.22 C ATOM 513 C ARG 32 -1.810 9.164 -1.954 1.00 0.22 C ATOM 514 O ARG 32 -2.192 9.365 -0.786 1.00 0.26 O ATOM 515 CB ARG 32 -4.099 8.593 -2.820 1.00 0.33 C ATOM 516 CG ARG 32 -4.487 10.026 -3.188 1.00 0.33 C ATOM 517 CD ARG 32 -5.956 10.247 -3.081 1.00 0.33 C ATOM 518 NE ARG 32 -6.320 11.654 -3.306 1.00 0.33 N ATOM 519 CZ ARG 32 -7.561 12.174 -3.223 1.00 0.33 C ATOM 520 NH1 ARG 32 -8.607 11.420 -2.932 1.00 0.33 N ATOM 521 NH2 ARG 32 -7.698 13.467 -3.434 1.00 0.33 N ATOM 535 N CYS 33 -0.662 9.660 -2.426 1.00 0.21 N ATOM 536 CA CYS 33 0.241 10.444 -1.585 1.00 0.23 C ATOM 537 C CYS 33 0.358 11.860 -2.124 1.00 0.25 C ATOM 538 O CYS 33 0.936 12.076 -3.186 1.00 0.29 O ATOM 539 CB CYS 33 1.620 9.783 -1.524 1.00 0.35 C ATOM 540 SG CYS 33 2.802 10.627 -0.475 1.00 0.35 S ATOM 546 N SER 34 -0.241 12.832 -1.435 1.00 0.27 N ATOM 547 CA SER 34 -0.273 14.218 -1.931 1.00 0.29 C ATOM 548 C SER 34 -0.782 14.243 -3.377 1.00 0.36 C ATOM 549 O SER 34 -0.220 14.901 -4.258 1.00 0.92 O ATOM 550 CB SER 34 1.098 14.868 -1.821 1.00 0.43 C ATOM 551 OG SER 34 1.529 14.924 -0.482 1.00 0.43 O ATOM 557 N ASP 35 -1.842 13.463 -3.590 1.00 0.51 N ATOM 558 CA ASP 35 -2.559 13.251 -4.846 1.00 0.53 C ATOM 559 C ASP 35 -1.762 12.583 -5.977 1.00 0.44 C ATOM 560 O ASP 35 -2.265 12.470 -7.097 1.00 0.54 O ATOM 561 CB ASP 35 -3.172 14.560 -5.344 1.00 0.80 C ATOM 562 CG ASP 35 -4.299 15.048 -4.430 1.00 0.80 C ATOM 563 OD1 ASP 35 -5.051 14.216 -3.930 1.00 0.80 O ATOM 564 OD2 ASP 35 -4.412 16.230 -4.232 1.00 0.80 O ATOM 569 N THR 36 -0.568 12.069 -5.694 1.00 0.33 N ATOM 570 CA THR 36 0.196 11.351 -6.707 1.00 0.36 C ATOM 571 C THR 36 0.059 9.858 -6.480 1.00 0.33 C ATOM 572 O THR 36 0.207 9.364 -5.356 1.00 0.42 O ATOM 573 CB THR 36 1.682 11.764 -6.714 1.00 0.54 C ATOM 574 OG1 THR 36 1.783 13.160 -7.024 1.00 0.54 O ATOM 575 CG2 THR 36 2.459 10.955 -7.771 1.00 0.54 C ATOM 583 N LYS 37 -0.272 9.130 -7.541 1.00 0.34 N ATOM 584 CA LYS 37 -0.439 7.692 -7.415 1.00 0.36 C ATOM 585 C LYS 37 0.856 6.908 -7.578 1.00 0.36 C ATOM 586 O LYS 37 1.581 7.079 -8.560 1.00 0.44 O ATOM 587 CB LYS 37 -1.474 7.174 -8.420 1.00 0.54 C ATOM 588 CG LYS 37 -1.771 5.672 -8.281 1.00 0.54 C ATOM 589 CD LYS 37 -2.884 5.197 -9.220 1.00 0.54 C ATOM 590 CE LYS 37 -3.118 3.702 -9.034 1.00 0.54 C ATOM 591 NZ LYS 37 -4.242 3.172 -9.867 1.00 0.54 N ATOM 605 N TYR 38 1.104 6.012 -6.627 1.00 0.28 N ATOM 606 CA TYR 38 2.256 5.113 -6.690 1.00 0.31 C ATOM 607 C TYR 38 1.731 3.698 -6.453 1.00 0.28 C ATOM 608 O TYR 38 0.640 3.526 -5.890 1.00 0.26 O ATOM 609 CB TYR 38 3.327 5.455 -5.653 1.00 0.46 C ATOM 610 CG TYR 38 3.860 6.859 -5.693 1.00 0.46 C ATOM 611 CD1 TYR 38 3.205 7.864 -4.987 1.00 0.46 C ATOM 612 CD2 TYR 38 5.015 7.143 -6.385 1.00 0.46 C ATOM 613 CE1 TYR 38 3.710 9.136 -4.980 1.00 0.46 C ATOM 614 CE2 TYR 38 5.521 8.422 -6.375 1.00 0.46 C ATOM 615 CZ TYR 38 4.876 9.415 -5.677 1.00 0.46 C ATOM 616 OH TYR 38 5.401 10.688 -5.660 1.00 0.46 O ATOM 626 N THR 39 2.441 2.680 -6.959 1.00 0.30 N ATOM 627 CA THR 39 1.995 1.300 -6.745 1.00 0.28 C ATOM 628 C THR 39 3.114 0.309 -6.405 1.00 0.30 C ATOM 629 O THR 39 4.280 0.523 -6.748 1.00 0.46 O ATOM 630 CB THR 39 1.283 0.754 -8.000 1.00 0.42 C ATOM 631 OG1 THR 39 2.229 0.640 -9.077 1.00 0.42 O ATOM 632 CG2 THR 39 0.163 1.697 -8.437 1.00 0.42 C ATOM 640 N LEU 40 2.713 -0.820 -5.803 1.00 0.20 N ATOM 641 CA LEU 40 3.573 -1.984 -5.555 1.00 0.28 C ATOM 642 C LEU 40 2.854 -3.283 -5.918 1.00 0.39 C ATOM 643 O LEU 40 1.636 -3.418 -5.754 1.00 0.48 O ATOM 644 CB LEU 40 4.049 -2.111 -4.092 1.00 0.42 C ATOM 645 CG LEU 40 5.000 -1.033 -3.510 1.00 0.42 C ATOM 646 CD1 LEU 40 5.124 -1.274 -1.977 1.00 0.42 C ATOM 647 CD2 LEU 40 6.359 -1.109 -4.169 1.00 0.42 C ATOM 659 N CYS 41 3.611 -4.257 -6.405 1.00 0.40 N ATOM 660 CA CYS 41 3.062 -5.572 -6.711 1.00 0.52 C ATOM 661 C CYS 41 4.213 -6.552 -6.888 1.00 0.81 C ATOM 662 O CYS 41 4.016 -7.766 -6.856 1.00 1.33 O ATOM 663 OXT CYS 41 5.359 -6.118 -6.767 1.00 1.33 O ATOM 664 CB CYS 41 2.203 -5.536 -7.983 1.00 0.78 C ATOM 665 SG CYS 41 1.360 -7.092 -8.351 1.00 0.78 S TER END