####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS407_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 1 - 20 4.76 16.42 LCS_AVERAGE: 42.89 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.91 22.13 LCS_AVERAGE: 31.11 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.95 21.92 LCS_AVERAGE: 24.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 20 3 3 12 14 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT Q 2 Q 2 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT E 3 E 3 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT T 4 T 4 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT R 5 R 5 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT K 6 K 6 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT K 7 K 7 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT C 8 C 8 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT T 9 T 9 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT E 10 E 10 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 22 LCS_GDT M 11 M 11 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 24 LCS_GDT K 12 K 12 15 17 20 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 24 LCS_GDT K 13 K 13 15 17 20 4 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 20 21 22 24 LCS_GDT K 14 K 14 15 17 20 6 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 21 21 22 24 LCS_GDT F 15 F 15 15 17 20 6 11 14 15 16 16 16 16 17 18 18 18 19 19 19 19 21 21 22 24 LCS_GDT K 16 K 16 15 17 20 4 5 12 15 16 16 16 16 17 18 18 18 19 19 19 19 21 21 22 24 LCS_GDT N 17 N 17 4 17 20 3 4 5 6 7 10 13 16 17 18 18 18 19 19 19 19 21 21 22 24 LCS_GDT C 18 C 18 6 9 20 3 5 6 6 9 10 12 15 17 18 18 18 19 19 19 19 21 21 22 24 LCS_GDT E 19 E 19 6 9 20 3 5 6 6 9 9 11 12 13 14 16 16 19 19 19 19 21 21 22 24 LCS_GDT V 20 V 20 6 9 20 3 5 6 6 9 9 11 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT R 21 R 21 6 9 17 3 5 6 6 9 9 11 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT C 22 C 22 6 9 17 3 5 6 6 9 9 11 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT D 23 D 23 6 9 17 3 4 6 6 9 9 11 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT E 24 E 24 4 12 17 3 4 4 11 11 11 12 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT S 25 S 25 10 12 17 3 8 10 11 11 11 12 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT N 26 N 26 10 12 17 5 8 10 11 11 11 12 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT H 27 H 27 10 12 17 5 8 10 11 11 11 12 12 13 14 14 15 15 16 18 19 21 21 22 24 LCS_GDT C 28 C 28 10 12 17 3 8 10 11 11 11 12 12 12 13 14 15 15 16 18 19 21 21 22 24 LCS_GDT V 29 V 29 10 12 17 3 8 10 11 11 11 12 12 12 13 14 14 14 16 18 19 21 21 22 24 LCS_GDT E 30 E 30 10 12 17 5 8 10 11 11 11 12 12 12 13 14 14 14 16 18 19 21 21 22 24 LCS_GDT V 31 V 31 10 12 16 5 8 10 11 11 11 12 12 12 13 14 14 15 16 18 19 21 21 22 24 LCS_GDT R 32 R 32 10 12 16 5 8 10 11 11 11 12 12 12 13 14 14 15 16 18 19 21 21 22 24 LCS_GDT C 33 C 33 10 12 16 5 8 10 11 11 11 12 12 12 13 14 14 14 16 17 18 20 20 22 24 LCS_GDT S 34 S 34 10 12 16 5 8 10 11 11 11 12 12 12 13 14 14 14 16 18 19 21 21 22 24 LCS_GDT D 35 D 35 4 12 16 3 4 4 4 9 11 12 12 12 13 14 14 14 16 18 19 21 21 22 24 LCS_GDT T 36 T 36 4 6 16 3 4 4 5 6 7 7 11 12 13 13 13 13 16 17 19 20 20 22 24 LCS_GDT K 37 K 37 5 6 15 4 5 5 5 6 7 7 8 8 8 9 9 9 11 13 14 15 17 18 19 LCS_GDT Y 38 Y 38 5 6 10 4 5 5 5 6 7 7 8 8 8 9 9 9 10 13 13 15 16 18 18 LCS_GDT T 39 T 39 5 6 10 4 5 5 5 6 7 7 8 8 8 9 9 9 10 11 13 15 16 17 17 LCS_GDT L 40 L 40 5 6 10 4 5 5 5 6 7 7 8 8 8 9 9 9 9 9 10 10 11 16 16 LCS_GDT C 41 C 41 5 6 10 3 5 5 5 6 7 7 8 8 8 9 9 9 9 9 10 10 11 16 16 LCS_AVERAGE LCS_A: 32.70 ( 24.09 31.11 42.89 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 14 15 16 16 16 16 17 18 18 18 19 19 19 19 21 21 22 24 GDT PERCENT_AT 21.95 29.27 34.15 36.59 39.02 39.02 39.02 39.02 41.46 43.90 43.90 43.90 46.34 46.34 46.34 46.34 51.22 51.22 53.66 58.54 GDT RMS_LOCAL 0.34 0.57 0.76 0.95 1.21 1.21 1.21 1.21 1.91 2.65 2.65 2.65 3.91 3.91 3.91 3.91 6.46 5.04 5.43 7.13 GDT RMS_ALL_AT 22.66 22.25 21.88 21.92 22.02 22.02 22.02 22.02 22.13 21.11 21.11 21.11 18.21 18.21 18.21 18.21 18.51 15.84 15.76 17.14 # Checking swapping # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.782 0 0.090 0.582 5.600 19.091 14.545 5.600 LGA Q 2 Q 2 1.916 0 0.225 0.906 6.417 65.909 31.919 6.417 LGA E 3 E 3 0.709 0 0.057 1.114 4.630 81.818 52.525 4.137 LGA T 4 T 4 0.695 0 0.024 1.145 3.419 81.818 68.312 3.419 LGA R 5 R 5 1.101 0 0.031 1.031 4.885 77.727 53.058 4.885 LGA K 6 K 6 0.909 0 0.023 1.338 6.215 81.818 51.313 6.215 LGA K 7 K 7 0.601 0 0.034 0.648 2.142 86.364 68.687 1.646 LGA C 8 C 8 0.614 0 0.035 0.747 3.482 81.818 71.212 3.482 LGA T 9 T 9 0.444 0 0.032 1.122 2.486 100.000 82.338 2.068 LGA E 10 E 10 0.269 0 0.019 0.745 3.086 100.000 73.131 3.086 LGA M 11 M 11 0.328 0 0.060 1.269 6.605 100.000 70.227 6.605 LGA K 12 K 12 1.119 0 0.043 0.642 4.514 69.545 50.303 4.514 LGA K 13 K 13 1.528 0 0.035 0.592 3.363 61.818 46.667 2.082 LGA K 14 K 14 0.958 0 0.024 0.619 2.071 77.727 66.263 2.071 LGA F 15 F 15 0.720 0 0.439 1.447 6.620 60.909 32.397 6.620 LGA K 16 K 16 1.704 0 0.046 1.306 7.633 36.364 29.495 7.633 LGA N 17 N 17 7.078 0 0.115 1.119 10.262 0.455 0.227 8.998 LGA C 18 C 18 10.132 0 0.190 0.854 12.806 0.000 0.000 8.040 LGA E 19 E 19 17.276 0 0.242 1.146 24.468 0.000 0.000 24.468 LGA V 20 V 20 19.357 0 0.139 0.268 22.810 0.000 0.000 19.897 LGA R 21 R 21 26.261 0 0.047 1.036 33.216 0.000 0.000 32.202 LGA C 22 C 22 31.161 0 0.625 0.720 34.885 0.000 0.000 31.169 LGA D 23 D 23 35.937 0 0.122 1.069 37.568 0.000 0.000 37.568 LGA E 24 E 24 37.236 0 0.649 0.982 40.347 0.000 0.000 39.963 LGA S 25 S 25 40.875 0 0.057 0.081 41.899 0.000 0.000 41.899 LGA N 26 N 26 37.202 0 0.687 1.265 38.069 0.000 0.000 35.312 LGA H 27 H 27 34.485 0 0.282 1.136 40.060 0.000 0.000 40.060 LGA C 28 C 28 30.297 0 0.074 0.707 32.036 0.000 0.000 30.468 LGA V 29 V 29 25.455 0 0.118 0.994 26.861 0.000 0.000 23.927 LGA E 30 E 30 25.188 0 0.056 0.673 31.095 0.000 0.000 29.372 LGA V 31 V 31 22.217 0 0.067 0.914 24.163 0.000 0.000 21.253 LGA R 32 R 32 23.978 0 0.237 1.055 26.091 0.000 0.000 24.728 LGA C 33 C 33 25.672 0 0.204 0.927 27.013 0.000 0.000 25.462 LGA S 34 S 34 28.539 0 0.174 0.647 30.578 0.000 0.000 27.407 LGA D 35 D 35 30.726 0 0.626 0.485 30.972 0.000 0.000 29.827 LGA T 36 T 36 30.740 0 0.100 0.895 32.261 0.000 0.000 32.261 LGA K 37 K 37 29.873 0 0.643 1.536 31.060 0.000 0.000 28.926 LGA Y 38 Y 38 29.592 0 0.048 1.332 32.325 0.000 0.000 32.325 LGA T 39 T 39 27.337 0 0.148 0.974 29.372 0.000 0.000 29.372 LGA L 40 L 40 26.967 0 0.618 1.058 28.847 0.000 0.000 28.847 LGA C 41 C 41 24.075 0 0.212 0.844 26.138 0.000 0.000 26.138 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 13.916 13.873 14.465 28.858 21.039 5.588 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 16 1.21 37.805 37.474 1.220 LGA_LOCAL RMSD: 1.211 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 22.023 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 13.916 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.366799 * X + -0.903777 * Y + 0.220556 * Z + 10.455252 Y_new = 0.889094 * X + 0.270781 * Y + -0.369037 * Z + -4.042696 Z_new = 0.273805 * X + 0.331457 * Y + 0.902866 * Z + 2.177700 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.179515 -0.277348 0.351842 [DEG: 67.5812 -15.8908 20.1590 ] ZXZ: 0.538691 0.444407 0.690434 [DEG: 30.8647 25.4626 39.5589 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS407_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 16 1.21 37.474 13.92 REMARK ---------------------------------------------------------- MOLECULE T0955TS407_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 CB SER 1 -1.831 -13.452 -1.350 1.00 0.00 C ATOM 2 OG SER 1 -1.942 -12.141 -1.879 1.00 0.00 O ATOM 4 C SER 1 -1.335 -12.792 1.035 1.00 0.00 C ATOM 5 O SER 1 -1.566 -11.631 1.393 1.00 0.00 O ATOM 8 N SER 1 -3.693 -12.957 0.215 1.00 0.00 N ATOM 10 CA SER 1 -2.316 -13.520 0.105 1.00 0.00 C ATOM 11 N GLN 2 -0.247 -13.484 1.413 1.00 0.00 N ATOM 13 CA GLN 2 0.818 -12.973 2.305 1.00 0.00 C ATOM 14 CB GLN 2 1.730 -14.118 2.768 1.00 0.00 C ATOM 15 CG GLN 2 1.074 -15.114 3.720 1.00 0.00 C ATOM 16 CD GLN 2 2.018 -16.221 4.148 1.00 0.00 C ATOM 17 OE1 GLN 2 2.715 -16.102 5.156 1.00 0.00 O ATOM 18 NE2 GLN 2 2.045 -17.306 3.382 1.00 0.00 N ATOM 21 C GLN 2 1.672 -11.849 1.693 1.00 0.00 C ATOM 22 O GLN 2 2.046 -10.903 2.398 1.00 0.00 O ATOM 23 N GLU 3 1.940 -11.950 0.381 1.00 0.00 N ATOM 25 CA GLU 3 2.745 -10.973 -0.386 1.00 0.00 C ATOM 26 CB GLU 3 3.058 -11.511 -1.790 1.00 0.00 C ATOM 27 CG GLU 3 4.017 -12.699 -1.821 1.00 0.00 C ATOM 28 CD GLU 3 4.282 -13.201 -3.229 1.00 0.00 C ATOM 29 OE1 GLU 3 3.545 -14.096 -3.691 1.00 0.00 O ATOM 30 OE2 GLU 3 5.232 -12.703 -3.872 1.00 0.00 O ATOM 31 C GLU 3 2.062 -9.598 -0.496 1.00 0.00 C ATOM 32 O GLU 3 2.728 -8.564 -0.359 1.00 0.00 O ATOM 33 N THR 4 0.736 -9.607 -0.708 1.00 0.00 N ATOM 35 CA THR 4 -0.099 -8.391 -0.824 1.00 0.00 C ATOM 36 CB THR 4 -1.522 -8.713 -1.373 1.00 0.00 C ATOM 37 OG1 THR 4 -2.108 -9.776 -0.609 1.00 0.00 O ATOM 39 CG2 THR 4 -1.457 -9.115 -2.842 1.00 0.00 C ATOM 40 C THR 4 -0.212 -7.648 0.524 1.00 0.00 C ATOM 41 O THR 4 -0.146 -6.412 0.561 1.00 0.00 O ATOM 42 N ARG 5 -0.319 -8.423 1.617 1.00 0.00 N ATOM 44 CA ARG 5 -0.424 -7.912 3.001 1.00 0.00 C ATOM 45 CB ARG 5 -0.820 -9.035 3.970 1.00 0.00 C ATOM 46 CG ARG 5 -2.246 -9.551 3.802 1.00 0.00 C ATOM 47 CD ARG 5 -2.555 -10.657 4.799 1.00 0.00 C ATOM 48 NE ARG 5 -3.921 -11.166 4.650 1.00 0.00 N ATOM 50 CZ ARG 5 -4.461 -12.139 5.384 1.00 0.00 C ATOM 51 NH1 ARG 5 -5.711 -12.515 5.153 1.00 0.00 N ATOM 54 NH2 ARG 5 -3.769 -12.741 6.347 1.00 0.00 N ATOM 57 C ARG 5 0.889 -7.256 3.466 1.00 0.00 C ATOM 58 O ARG 5 0.861 -6.193 4.100 1.00 0.00 O ATOM 59 N LYS 6 2.022 -7.883 3.109 1.00 0.00 N ATOM 61 CA LYS 6 3.382 -7.408 3.440 1.00 0.00 C ATOM 62 CB LYS 6 4.430 -8.493 3.151 1.00 0.00 C ATOM 63 CG LYS 6 4.437 -9.647 4.146 1.00 0.00 C ATOM 64 CD LYS 6 5.503 -10.677 3.789 1.00 0.00 C ATOM 65 CE LYS 6 5.529 -11.845 4.774 1.00 0.00 C ATOM 66 NZ LYS 6 4.320 -12.718 4.699 1.00 0.00 N ATOM 70 C LYS 6 3.740 -6.113 2.688 1.00 0.00 C ATOM 71 O LYS 6 4.270 -5.173 3.293 1.00 0.00 O ATOM 72 N LYS 7 3.394 -6.063 1.392 1.00 0.00 N ATOM 74 CA LYS 7 3.641 -4.902 0.512 1.00 0.00 C ATOM 75 CB LYS 7 3.383 -5.263 -0.957 1.00 0.00 C ATOM 76 CG LYS 7 4.453 -6.144 -1.591 1.00 0.00 C ATOM 77 CD LYS 7 4.123 -6.456 -3.042 1.00 0.00 C ATOM 78 CE LYS 7 5.191 -7.335 -3.673 1.00 0.00 C ATOM 79 NZ LYS 7 4.882 -7.648 -5.096 1.00 0.00 N ATOM 83 C LYS 7 2.783 -3.691 0.915 1.00 0.00 C ATOM 84 O LYS 7 3.267 -2.554 0.885 1.00 0.00 O ATOM 85 N CYS 8 1.536 -3.961 1.334 1.00 0.00 N ATOM 87 CA CYS 8 0.564 -2.940 1.778 1.00 0.00 C ATOM 88 CB CYS 8 -0.844 -3.536 1.890 1.00 0.00 C ATOM 89 SG CYS 8 -1.620 -3.931 0.304 1.00 0.00 S ATOM 90 C CYS 8 0.961 -2.263 3.102 1.00 0.00 C ATOM 91 O CYS 8 0.922 -1.030 3.197 1.00 0.00 O ATOM 92 N THR 9 1.380 -3.068 4.092 1.00 0.00 N ATOM 94 CA THR 9 1.811 -2.578 5.418 1.00 0.00 C ATOM 95 CB THR 9 1.866 -3.729 6.502 1.00 0.00 C ATOM 96 OG1 THR 9 2.214 -3.179 7.779 1.00 0.00 O ATOM 98 CG2 THR 9 2.863 -4.840 6.136 1.00 0.00 C ATOM 99 C THR 9 3.135 -1.780 5.335 1.00 0.00 C ATOM 100 O THR 9 3.292 -0.765 6.022 1.00 0.00 O ATOM 101 N GLU 10 4.044 -2.230 4.455 1.00 0.00 N ATOM 103 CA GLU 10 5.356 -1.593 4.222 1.00 0.00 C ATOM 104 CB GLU 10 6.273 -2.503 3.394 1.00 0.00 C ATOM 105 CG GLU 10 6.910 -3.640 4.184 1.00 0.00 C ATOM 106 CD GLU 10 7.807 -4.517 3.330 1.00 0.00 C ATOM 107 OE1 GLU 10 7.304 -5.507 2.758 1.00 0.00 O ATOM 108 OE2 GLU 10 9.017 -4.220 3.233 1.00 0.00 O ATOM 109 C GLU 10 5.241 -0.209 3.559 1.00 0.00 C ATOM 110 O GLU 10 5.901 0.737 4.002 1.00 0.00 O ATOM 111 N MET 11 4.387 -0.094 2.528 1.00 0.00 N ATOM 113 CA MET 11 4.156 1.176 1.806 1.00 0.00 C ATOM 114 CG MET 11 2.040 0.330 0.466 1.00 0.00 C ATOM 115 SD MET 11 1.333 0.128 -1.184 1.00 0.00 S ATOM 116 CE MET 11 0.219 1.539 -1.263 1.00 0.00 C ATOM 117 C MET 11 3.424 2.228 2.666 1.00 0.00 C ATOM 118 O MET 11 3.762 3.415 2.612 1.00 0.00 O ATOM 119 CB MET 11 3.449 0.953 0.447 1.00 0.00 C ATOM 120 N LYS 12 2.452 1.765 3.470 1.00 0.47 N ATOM 122 CA LYS 12 1.651 2.610 4.381 1.00 0.47 C ATOM 123 CB LYS 12 0.442 1.839 4.929 1.00 0.47 C ATOM 124 CG LYS 12 -0.690 1.644 3.928 1.00 0.47 C ATOM 125 CD LYS 12 -1.848 0.876 4.545 1.00 0.47 C ATOM 126 CE LYS 12 -2.979 0.684 3.547 1.00 0.47 C ATOM 127 NZ LYS 12 -4.122 -0.064 4.140 1.00 0.47 N ATOM 131 C LYS 12 2.490 3.174 5.542 1.00 0.47 C ATOM 132 O LYS 12 2.330 4.344 5.907 1.00 0.47 O ATOM 133 N LYS 13 3.370 2.331 6.107 1.00 0.70 N ATOM 135 CA LYS 13 4.281 2.696 7.213 1.00 0.70 C ATOM 136 CB LYS 13 4.888 1.445 7.862 1.00 0.70 C ATOM 137 CG LYS 13 3.940 0.691 8.785 1.00 0.70 C ATOM 138 CD LYS 13 4.612 -0.534 9.385 1.00 0.70 C ATOM 139 CE LYS 13 3.665 -1.287 10.306 1.00 0.70 C ATOM 140 NZ LYS 13 4.309 -2.491 10.900 1.00 0.70 N ATOM 144 C LYS 13 5.399 3.664 6.780 1.00 0.70 C ATOM 145 O LYS 13 5.711 4.612 7.509 1.00 0.70 O ATOM 146 N LYS 14 5.983 3.411 5.598 1.00 0.80 N ATOM 148 CA LYS 14 7.064 4.227 5.002 1.00 0.80 C ATOM 149 CB LYS 14 7.743 3.474 3.850 1.00 0.80 C ATOM 150 CG LYS 14 8.666 2.344 4.289 1.00 0.80 C ATOM 151 CD LYS 14 9.297 1.646 3.089 1.00 0.80 C ATOM 152 CE LYS 14 10.225 0.507 3.505 1.00 0.80 C ATOM 153 NZ LYS 14 11.470 0.968 4.190 1.00 0.80 N ATOM 157 C LYS 14 6.622 5.624 4.523 1.00 0.80 C ATOM 158 O LYS 14 7.379 6.591 4.661 1.00 0.80 O ATOM 159 N PHE 15 5.404 5.707 3.966 1.00 0.00 N ATOM 161 CA PHE 15 4.796 6.951 3.445 1.00 0.00 C ATOM 162 CB PHE 15 3.541 6.615 2.592 1.00 0.00 C ATOM 163 CG PHE 15 3.210 7.635 1.496 1.00 0.00 C ATOM 164 CD1 PHE 15 2.340 8.721 1.755 1.00 0.00 C ATOM 165 CD2 PHE 15 3.736 7.491 0.189 1.00 0.00 C ATOM 166 CE1 PHE 15 1.997 9.650 0.734 1.00 0.00 C ATOM 167 CE2 PHE 15 3.402 8.411 -0.843 1.00 0.00 C ATOM 168 CZ PHE 15 2.531 9.493 -0.569 1.00 0.00 C ATOM 169 C PHE 15 4.432 7.968 4.552 1.00 0.00 C ATOM 170 O PHE 15 4.565 9.180 4.344 1.00 0.00 O ATOM 171 N LYS 16 3.984 7.456 5.706 1.00 0.00 N ATOM 173 CA LYS 16 3.571 8.260 6.877 1.00 0.00 C ATOM 174 CB LYS 16 2.585 7.468 7.749 1.00 0.00 C ATOM 175 CG LYS 16 1.216 7.237 7.117 1.00 0.00 C ATOM 176 CD LYS 16 0.303 6.446 8.049 1.00 0.00 C ATOM 177 CE LYS 16 -1.075 6.203 7.437 1.00 0.00 C ATOM 178 NZ LYS 16 -1.055 5.265 6.275 1.00 0.00 N ATOM 182 C LYS 16 4.733 8.776 7.750 1.00 0.00 C ATOM 183 O LYS 16 4.601 9.825 8.396 1.00 0.00 O ATOM 184 N ASN 17 5.860 8.051 7.738 1.00 0.00 N ATOM 186 CA ASN 17 7.067 8.395 8.516 1.00 0.00 C ATOM 187 CB ASN 17 7.664 7.139 9.176 1.00 0.00 C ATOM 188 CG ASN 17 6.762 6.551 10.256 1.00 0.00 C ATOM 189 OD1 ASN 17 5.917 5.698 9.980 1.00 0.00 O ATOM 190 ND2 ASN 17 6.954 6.994 11.496 1.00 0.00 N ATOM 193 C ASN 17 8.141 9.118 7.684 1.00 0.00 C ATOM 194 O ASN 17 8.636 10.170 8.104 1.00 0.00 O ATOM 195 N CYS 18 8.465 8.557 6.503 1.00 0.00 N ATOM 197 CA CYS 18 9.467 9.055 5.519 1.00 0.00 C ATOM 198 CB CYS 18 8.847 10.094 4.562 1.00 0.00 C ATOM 199 SG CYS 18 8.206 11.579 5.373 1.00 0.00 S ATOM 200 C CYS 18 10.832 9.556 6.050 1.00 0.00 C ATOM 201 O CYS 18 10.889 10.523 6.823 1.00 0.00 O ATOM 202 N GLU 19 11.909 8.870 5.640 1.00 0.00 N ATOM 204 CA GLU 19 13.294 9.195 6.033 1.00 0.00 C ATOM 205 CB GLU 19 13.959 8.006 6.752 1.00 0.00 C ATOM 206 CG GLU 19 13.380 7.686 8.128 1.00 0.00 C ATOM 207 CD GLU 19 14.066 6.507 8.792 1.00 0.00 C ATOM 208 OE1 GLU 19 15.058 6.727 9.520 1.00 0.00 O ATOM 209 OE2 GLU 19 13.612 5.361 8.589 1.00 0.00 O ATOM 210 C GLU 19 14.135 9.602 4.814 1.00 0.00 C ATOM 211 O GLU 19 14.030 8.978 3.748 1.00 0.00 O ATOM 212 N VAL 20 14.940 10.663 4.976 1.00 0.00 N ATOM 214 CA VAL 20 15.828 11.205 3.923 1.00 0.00 C ATOM 215 CB VAL 20 15.534 12.736 3.618 1.00 0.00 C ATOM 216 CG1 VAL 20 16.125 13.155 2.258 1.00 0.00 C ATOM 217 CG2 VAL 20 14.031 13.019 3.631 1.00 0.00 C ATOM 218 C VAL 20 17.292 11.025 4.387 1.00 0.00 C ATOM 219 O VAL 20 17.587 11.156 5.584 1.00 0.00 O ATOM 220 N ARG 21 18.178 10.694 3.436 1.00 0.00 N ATOM 222 CA ARG 21 19.617 10.484 3.683 1.00 0.00 C ATOM 223 CB ARG 21 20.040 9.051 3.312 1.00 0.00 C ATOM 224 CG ARG 21 19.479 7.961 4.226 1.00 0.00 C ATOM 225 CD ARG 21 19.943 6.565 3.814 1.00 0.00 C ATOM 226 NE ARG 21 21.372 6.344 4.059 1.00 0.00 N ATOM 228 CZ ARG 21 22.030 5.213 3.798 1.00 0.00 C ATOM 229 NH1 ARG 21 23.327 5.137 4.065 1.00 0.00 N ATOM 232 NH2 ARG 21 21.412 4.161 3.272 1.00 0.00 N ATOM 235 C ARG 21 20.465 11.494 2.896 1.00 0.00 C ATOM 236 O ARG 21 20.153 11.797 1.735 1.00 0.00 O ATOM 237 N CYS 22 21.511 12.024 3.546 1.00 0.00 N ATOM 239 CA CYS 22 22.441 13.006 2.956 1.00 0.00 C ATOM 240 CB CYS 22 22.460 14.301 3.783 1.00 0.00 C ATOM 241 SG CYS 22 22.831 14.077 5.542 1.00 0.00 S ATOM 242 C CYS 22 23.862 12.434 2.833 1.00 0.00 C ATOM 243 O CYS 22 24.536 12.669 1.822 1.00 0.00 O ATOM 244 N ASP 23 24.297 11.691 3.861 1.00 1.42 N ATOM 246 CA ASP 23 25.628 11.059 3.924 1.00 1.42 C ATOM 247 CB ASP 23 26.403 11.509 5.190 1.00 1.42 C ATOM 248 CG ASP 23 25.572 11.423 6.479 1.00 1.42 C ATOM 249 OD1 ASP 23 25.594 10.361 7.137 1.00 1.42 O ATOM 250 OD2 ASP 23 24.913 12.425 6.833 1.00 1.42 O ATOM 251 C ASP 23 25.568 9.522 3.834 1.00 1.42 C ATOM 252 O ASP 23 24.586 8.915 4.281 1.00 1.42 O ATOM 253 N GLU 24 26.617 8.917 3.259 1.00 2.08 N ATOM 255 CA GLU 24 26.739 7.456 3.085 1.00 2.08 C ATOM 256 CB GLU 24 27.130 7.108 1.641 1.00 2.08 C ATOM 257 CG GLU 24 26.050 7.390 0.599 1.00 2.08 C ATOM 258 CD GLU 24 26.484 7.028 -0.809 1.00 2.08 C ATOM 259 OE1 GLU 24 27.052 7.899 -1.501 1.00 2.08 O ATOM 260 OE2 GLU 24 26.253 5.873 -1.226 1.00 2.08 O ATOM 261 C GLU 24 27.761 6.853 4.063 1.00 2.08 C ATOM 262 O GLU 24 28.797 7.473 4.339 1.00 2.08 O ATOM 263 N SER 25 27.445 5.660 4.587 1.00 2.15 N ATOM 265 CA SER 25 28.295 4.924 5.542 1.00 2.15 C ATOM 266 CB SER 25 27.497 4.561 6.803 1.00 2.15 C ATOM 267 OG SER 25 27.004 5.723 7.449 1.00 2.15 O ATOM 269 C SER 25 28.873 3.647 4.911 1.00 2.15 C ATOM 270 O SER 25 30.004 3.259 5.225 1.00 2.15 O ATOM 271 N ASN 26 28.088 3.017 4.023 1.00 2.04 N ATOM 273 CA ASN 26 28.466 1.780 3.315 1.00 2.04 C ATOM 274 CB ASN 26 27.350 0.726 3.461 1.00 2.04 C ATOM 275 CG ASN 26 27.879 -0.710 3.467 1.00 2.04 C ATOM 276 OD1 ASN 26 28.163 -1.274 4.525 1.00 2.04 O ATOM 277 ND2 ASN 26 27.996 -1.305 2.283 1.00 2.04 N ATOM 280 C ASN 26 28.721 2.089 1.826 1.00 2.04 C ATOM 281 O ASN 26 28.187 3.071 1.298 1.00 2.04 O ATOM 282 N HIS 27 29.535 1.243 1.175 1.00 2.06 N ATOM 284 CA HIS 27 29.901 1.373 -0.248 1.00 2.06 C ATOM 285 CG HIS 27 32.008 1.865 -1.625 1.00 2.06 C ATOM 286 CD2 HIS 27 32.568 1.360 -2.753 1.00 2.06 C ATOM 287 ND1 HIS 27 32.077 3.236 -1.750 1.00 2.06 N ATOM 289 CE1 HIS 27 32.649 3.548 -2.899 1.00 2.06 C ATOM 290 NE2 HIS 27 32.956 2.426 -3.526 1.00 2.06 N ATOM 292 C HIS 27 29.127 0.336 -1.094 1.00 2.06 C ATOM 293 O HIS 27 28.922 0.545 -2.297 1.00 2.06 O ATOM 294 CB HIS 27 31.426 1.184 -0.418 1.00 2.06 C ATOM 295 N CYS 28 28.698 -0.755 -0.444 1.00 2.21 N ATOM 297 CA CYS 28 27.945 -1.854 -1.076 1.00 2.21 C ATOM 298 CB CYS 28 28.518 -3.211 -0.639 1.00 2.21 C ATOM 299 SG CYS 28 27.848 -4.650 -1.513 1.00 2.21 S ATOM 300 C CYS 28 26.444 -1.779 -0.742 1.00 2.21 C ATOM 301 O CYS 28 26.074 -1.407 0.380 1.00 2.21 O ATOM 302 N VAL 29 25.602 -2.118 -1.729 1.00 2.20 N ATOM 304 CA VAL 29 24.128 -2.110 -1.608 1.00 2.20 C ATOM 305 CB VAL 29 23.435 -1.218 -2.721 1.00 2.20 C ATOM 306 CG1 VAL 29 23.594 0.255 -2.373 1.00 2.20 C ATOM 307 CG2 VAL 29 24.022 -1.488 -4.126 1.00 2.20 C ATOM 308 C VAL 29 23.519 -3.530 -1.590 1.00 2.20 C ATOM 309 O VAL 29 24.014 -4.427 -2.287 1.00 2.20 O ATOM 310 N GLU 30 22.471 -3.717 -0.774 1.00 2.21 N ATOM 312 CA GLU 30 21.761 -5.001 -0.621 1.00 2.21 C ATOM 313 CB GLU 30 21.728 -5.455 0.860 1.00 2.21 C ATOM 314 CG GLU 30 21.326 -4.398 1.913 1.00 2.21 C ATOM 315 CD GLU 30 21.320 -4.953 3.325 1.00 2.21 C ATOM 316 OE1 GLU 30 20.267 -5.462 3.761 1.00 2.21 O ATOM 317 OE2 GLU 30 22.370 -4.878 3.998 1.00 2.21 O ATOM 318 C GLU 30 20.344 -4.989 -1.232 1.00 2.21 C ATOM 319 O GLU 30 19.609 -4.006 -1.076 1.00 2.21 O ATOM 320 N VAL 31 19.992 -6.081 -1.928 1.00 2.10 N ATOM 322 CA VAL 31 18.684 -6.261 -2.591 1.00 2.10 C ATOM 323 CB VAL 31 18.828 -6.572 -4.138 1.00 2.10 C ATOM 324 CG1 VAL 31 19.177 -5.297 -4.890 1.00 2.10 C ATOM 325 CG2 VAL 31 19.903 -7.649 -4.413 1.00 2.10 C ATOM 326 C VAL 31 17.794 -7.319 -1.901 1.00 2.10 C ATOM 327 O VAL 31 18.306 -8.336 -1.411 1.00 2.10 O ATOM 328 N ARG 32 16.481 -7.052 -1.857 1.00 2.00 N ATOM 330 CA ARG 32 15.473 -7.940 -1.243 1.00 2.00 C ATOM 331 CB ARG 32 14.604 -7.169 -0.236 1.00 2.00 C ATOM 332 CG ARG 32 15.336 -6.720 1.032 1.00 2.00 C ATOM 333 CD ARG 32 14.424 -5.952 1.986 1.00 2.00 C ATOM 334 NE ARG 32 13.404 -6.802 2.610 1.00 2.00 N ATOM 336 CZ ARG 32 12.476 -6.383 3.471 1.00 2.00 C ATOM 337 NH1 ARG 32 11.606 -7.251 3.968 1.00 2.00 N ATOM 340 NH2 ARG 32 12.409 -5.108 3.845 1.00 2.00 N ATOM 343 C ARG 32 14.579 -8.585 -2.315 1.00 2.00 C ATOM 344 O ARG 32 14.246 -7.939 -3.317 1.00 2.00 O ATOM 345 N CYS 33 14.218 -9.858 -2.097 1.00 2.00 N ATOM 347 CA CYS 33 13.370 -10.647 -3.010 1.00 2.00 C ATOM 348 CB CYS 33 14.052 -11.981 -3.350 1.00 2.00 C ATOM 349 SG CYS 33 13.239 -12.956 -4.645 1.00 2.00 S ATOM 350 C CYS 33 11.981 -10.908 -2.405 1.00 2.00 C ATOM 351 O CYS 33 10.989 -10.969 -3.139 1.00 2.00 O ATOM 352 N SER 34 11.930 -11.039 -1.065 1.00 1.89 N ATOM 354 CA SER 34 10.720 -11.301 -0.233 1.00 1.89 C ATOM 355 CB SER 34 9.743 -10.104 -0.221 1.00 1.89 C ATOM 356 OG SER 34 9.239 -9.814 -1.514 1.00 1.89 O ATOM 358 C SER 34 9.952 -12.617 -0.480 1.00 1.89 C ATOM 359 O SER 34 9.501 -13.257 0.479 1.00 1.89 O ATOM 360 N ASP 35 9.819 -13.006 -1.756 1.00 1.98 N ATOM 362 CA ASP 35 9.120 -14.234 -2.185 1.00 1.98 C ATOM 363 CB ASP 35 8.209 -13.946 -3.406 1.00 1.98 C ATOM 364 CG ASP 35 8.907 -13.148 -4.516 1.00 1.98 C ATOM 365 OD1 ASP 35 9.520 -13.772 -5.410 1.00 1.98 O ATOM 366 OD2 ASP 35 8.826 -11.900 -4.497 1.00 1.98 O ATOM 367 C ASP 35 10.081 -15.413 -2.463 1.00 1.98 C ATOM 368 O ASP 35 11.297 -15.204 -2.559 1.00 1.98 O ATOM 369 N THR 36 9.525 -16.629 -2.586 1.00 2.10 N ATOM 371 CA THR 36 10.284 -17.871 -2.847 1.00 2.10 C ATOM 372 CB THR 36 9.602 -19.110 -2.185 1.00 2.10 C ATOM 373 OG1 THR 36 8.214 -19.148 -2.543 1.00 2.10 O ATOM 375 CG2 THR 36 9.738 -19.058 -0.668 1.00 2.10 C ATOM 376 C THR 36 10.503 -18.141 -4.351 1.00 2.10 C ATOM 377 O THR 36 9.639 -17.811 -5.176 1.00 2.10 O ATOM 378 N LYS 37 11.671 -18.712 -4.687 1.00 2.43 N ATOM 380 CA LYS 37 12.069 -19.045 -6.068 1.00 2.43 C ATOM 381 CB LYS 37 13.513 -18.590 -6.337 1.00 2.43 C ATOM 382 CG LYS 37 13.711 -17.078 -6.376 1.00 2.43 C ATOM 383 CD LYS 37 15.166 -16.719 -6.629 1.00 2.43 C ATOM 384 CE LYS 37 15.366 -15.212 -6.659 1.00 2.43 C ATOM 385 NZ LYS 37 16.789 -14.845 -6.901 1.00 2.43 N ATOM 389 C LYS 37 11.934 -20.549 -6.361 1.00 2.43 C ATOM 390 O LYS 37 11.739 -20.941 -7.520 1.00 2.43 O ATOM 391 N TYR 38 12.018 -21.368 -5.303 1.00 2.98 N ATOM 393 CA TYR 38 11.916 -22.838 -5.384 1.00 2.98 C ATOM 394 CB TYR 38 12.963 -23.504 -4.457 1.00 2.98 C ATOM 395 CG TYR 38 14.438 -23.228 -4.772 1.00 2.98 C ATOM 396 CD1 TYR 38 15.122 -22.139 -4.176 1.00 2.98 C ATOM 397 CE1 TYR 38 16.501 -21.900 -4.437 1.00 2.98 C ATOM 398 CD2 TYR 38 15.173 -24.076 -5.639 1.00 2.98 C ATOM 399 CE2 TYR 38 16.551 -23.843 -5.906 1.00 2.98 C ATOM 400 CZ TYR 38 17.202 -22.756 -5.301 1.00 2.98 C ATOM 401 OH TYR 38 18.536 -22.528 -5.555 1.00 2.98 O ATOM 403 C TYR 38 10.509 -23.354 -5.037 1.00 2.98 C ATOM 404 O TYR 38 9.848 -22.807 -4.144 1.00 2.98 O ATOM 405 N THR 39 10.067 -24.392 -5.763 1.00 3.06 N ATOM 407 CA THR 39 8.747 -25.031 -5.587 1.00 3.06 C ATOM 408 CB THR 39 7.954 -25.112 -6.934 1.00 3.06 C ATOM 409 OG1 THR 39 8.791 -25.670 -7.957 1.00 3.06 O ATOM 411 CG2 THR 39 7.477 -23.730 -7.365 1.00 3.06 C ATOM 412 C THR 39 8.875 -26.442 -4.979 1.00 3.06 C ATOM 413 O THR 39 9.834 -27.166 -5.283 1.00 3.06 O ATOM 414 N LEU 40 7.926 -26.796 -4.100 1.00 3.19 N ATOM 416 CA LEU 40 7.878 -28.103 -3.416 1.00 3.19 C ATOM 417 CB LEU 40 7.826 -27.923 -1.873 1.00 3.19 C ATOM 418 CG LEU 40 6.918 -26.960 -1.066 1.00 3.19 C ATOM 419 CD1 LEU 40 5.540 -27.571 -0.762 1.00 3.19 C ATOM 420 CD2 LEU 40 7.618 -26.621 0.240 1.00 3.19 C ATOM 421 C LEU 40 6.719 -28.990 -3.909 1.00 3.19 C ATOM 422 O LEU 40 6.857 -30.218 -3.961 1.00 3.19 O ATOM 423 N CYS 41 5.593 -28.349 -4.277 1.00 2.96 N ATOM 425 CA CYS 41 4.338 -28.969 -4.784 1.00 2.96 C ATOM 426 CB CYS 41 4.535 -29.595 -6.183 1.00 2.96 C ATOM 427 SG CYS 41 3.016 -30.118 -7.029 1.00 2.96 S ATOM 428 C CYS 41 3.645 -29.966 -3.840 1.00 2.96 C ATOM 429 O CYS 41 2.401 -29.902 -3.742 1.00 2.96 O ATOM 430 OXT CYS 41 4.345 -30.789 -3.214 1.00 2.96 O TER END