####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS407_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 1 - 19 4.19 20.20 LCS_AVERAGE: 42.24 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.71 21.42 LCS_AVERAGE: 30.22 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.88 21.32 LCS_AVERAGE: 23.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 19 3 3 4 11 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT Q 2 Q 2 15 17 19 9 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT E 3 E 3 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT T 4 T 4 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT R 5 R 5 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT K 6 K 6 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT K 7 K 7 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT C 8 C 8 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 20 21 LCS_GDT T 9 T 9 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 19 20 20 22 23 LCS_GDT E 10 E 10 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 18 18 20 20 22 22 23 LCS_GDT M 11 M 11 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 20 20 21 22 23 23 24 LCS_GDT K 12 K 12 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 20 20 21 22 23 23 24 LCS_GDT K 13 K 13 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 20 20 21 22 23 23 24 LCS_GDT K 14 K 14 15 17 19 10 13 14 15 16 16 17 17 17 17 18 18 18 20 20 21 22 23 23 24 LCS_GDT F 15 F 15 15 17 19 9 13 14 15 16 16 17 17 17 17 18 18 18 20 20 21 22 23 23 24 LCS_GDT K 16 K 16 15 17 19 3 4 12 15 16 16 17 17 17 17 18 18 18 19 20 21 22 23 23 24 LCS_GDT N 17 N 17 3 17 19 1 3 5 7 11 16 17 17 17 17 18 18 18 18 18 19 20 20 21 22 LCS_GDT C 18 C 18 5 8 19 3 5 5 6 7 8 9 11 12 17 18 18 18 18 18 19 20 20 21 21 LCS_GDT E 19 E 19 5 8 19 3 5 5 6 7 8 9 11 12 12 13 14 15 16 18 19 19 20 21 21 LCS_GDT V 20 V 20 5 8 17 3 5 5 6 7 8 9 11 12 12 15 16 17 18 20 20 22 23 23 24 LCS_GDT R 21 R 21 5 8 17 3 5 5 6 7 8 9 11 12 12 15 16 17 19 20 21 22 23 23 24 LCS_GDT C 22 C 22 5 8 17 3 5 5 6 7 8 10 11 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT D 23 D 23 5 8 17 3 4 5 6 7 8 9 11 12 13 16 17 17 20 20 21 22 23 23 24 LCS_GDT E 24 E 24 4 8 17 3 4 4 5 7 8 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT S 25 S 25 4 10 17 4 8 8 8 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT N 26 N 26 8 10 17 3 6 9 9 9 9 9 11 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT H 27 H 27 8 10 17 5 8 9 9 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT C 28 C 28 8 10 17 5 8 9 9 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT V 29 V 29 8 10 17 4 8 9 9 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT E 30 E 30 8 10 17 5 8 9 9 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT V 31 V 31 8 10 17 5 8 9 9 9 9 10 12 14 15 15 17 18 20 20 21 22 23 23 24 LCS_GDT R 32 R 32 8 10 17 5 8 9 9 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT C 33 C 33 8 10 17 4 8 9 9 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT S 34 S 34 5 10 17 3 4 9 9 9 9 10 12 14 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT D 35 D 35 7 9 17 3 5 7 8 8 9 9 10 11 15 16 17 18 20 20 21 22 23 23 24 LCS_GDT T 36 T 36 7 9 17 3 4 7 8 8 9 9 9 9 11 11 16 18 20 20 21 22 23 23 24 LCS_GDT K 37 K 37 7 9 16 3 4 7 8 8 9 9 9 9 9 9 9 10 12 12 14 20 22 22 24 LCS_GDT Y 38 Y 38 7 9 11 3 5 7 8 8 9 9 9 9 9 9 9 10 10 10 10 10 10 12 13 LCS_GDT T 39 T 39 7 9 11 3 5 7 8 8 9 9 9 9 9 9 9 10 10 10 10 10 10 11 11 LCS_GDT L 40 L 40 7 9 11 3 5 7 8 8 9 9 9 9 9 9 9 10 10 10 10 10 10 11 11 LCS_GDT C 41 C 41 7 9 11 3 5 7 8 8 9 9 9 9 9 9 9 10 10 10 10 10 10 11 11 LCS_AVERAGE LCS_A: 31.83 ( 23.02 30.22 42.24 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 13 14 15 16 16 17 17 17 17 18 18 18 20 20 21 22 23 23 24 GDT PERCENT_AT 24.39 31.71 34.15 36.59 39.02 39.02 41.46 41.46 41.46 41.46 43.90 43.90 43.90 48.78 48.78 51.22 53.66 56.10 56.10 58.54 GDT RMS_LOCAL 0.28 0.48 0.57 0.88 1.16 1.16 1.71 1.71 1.71 1.71 2.68 2.68 2.68 5.01 4.92 5.19 5.42 5.70 5.70 6.09 GDT RMS_ALL_AT 21.63 21.30 21.34 21.32 21.38 21.38 21.42 21.42 21.42 21.42 20.77 20.77 20.77 16.85 17.93 17.32 17.48 17.25 17.25 17.03 # Checking swapping # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.183 0 0.645 0.598 3.651 36.364 30.606 3.651 LGA Q 2 Q 2 2.220 0 0.229 0.918 6.876 51.364 26.061 6.876 LGA E 3 E 3 0.994 0 0.077 0.981 4.393 77.727 54.949 3.079 LGA T 4 T 4 1.071 0 0.038 0.052 1.393 73.636 70.130 1.315 LGA R 5 R 5 1.068 0 0.045 0.776 4.490 73.636 46.777 4.490 LGA K 6 K 6 0.462 0 0.035 1.332 6.909 95.455 56.970 6.909 LGA K 7 K 7 0.525 0 0.025 0.773 2.933 81.818 58.788 2.933 LGA C 8 C 8 1.016 0 0.043 0.048 1.815 73.636 68.485 1.815 LGA T 9 T 9 0.916 0 0.019 0.153 1.566 77.727 75.065 0.966 LGA E 10 E 10 0.662 0 0.017 0.766 3.393 81.818 62.222 3.393 LGA M 11 M 11 0.781 0 0.059 1.003 4.533 73.636 60.909 4.533 LGA K 12 K 12 1.835 0 0.037 0.647 4.997 51.364 35.960 4.997 LGA K 13 K 13 2.166 0 0.032 0.226 3.980 47.727 32.929 3.980 LGA K 14 K 14 1.097 0 0.017 0.637 1.445 73.636 72.727 0.982 LGA F 15 F 15 0.765 0 0.434 1.446 7.447 61.818 29.091 7.447 LGA K 16 K 16 1.447 0 0.673 1.399 6.763 44.091 30.101 6.763 LGA N 17 N 17 4.605 0 0.614 1.445 7.675 7.273 3.864 6.306 LGA C 18 C 18 9.739 0 0.662 0.815 12.950 0.000 0.000 10.437 LGA E 19 E 19 16.763 0 0.184 1.135 20.451 0.000 0.000 20.451 LGA V 20 V 20 18.374 0 0.127 0.971 21.907 0.000 0.000 15.671 LGA R 21 R 21 25.270 0 0.013 1.115 32.809 0.000 0.000 32.809 LGA C 22 C 22 28.389 0 0.638 1.111 32.363 0.000 0.000 27.534 LGA D 23 D 23 35.373 0 0.202 1.099 36.756 0.000 0.000 35.380 LGA E 24 E 24 41.068 0 0.180 0.187 45.894 0.000 0.000 45.894 LGA S 25 S 25 42.361 0 0.234 0.649 43.475 0.000 0.000 42.078 LGA N 26 N 26 38.538 0 0.132 0.901 39.438 0.000 0.000 36.668 LGA H 27 H 27 37.125 0 0.394 1.243 41.482 0.000 0.000 41.482 LGA C 28 C 28 32.361 0 0.067 0.761 34.508 0.000 0.000 34.508 LGA V 29 V 29 26.339 0 0.136 0.294 28.283 0.000 0.000 22.519 LGA E 30 E 30 25.500 0 0.041 1.329 28.398 0.000 0.000 28.398 LGA V 31 V 31 21.589 0 0.061 1.115 23.603 0.000 0.000 21.624 LGA R 32 R 32 23.281 0 0.246 1.032 29.636 0.000 0.000 28.045 LGA C 33 C 33 22.972 0 0.518 0.907 25.939 0.000 0.000 21.500 LGA S 34 S 34 25.288 0 0.177 0.179 26.944 0.000 0.000 24.392 LGA D 35 D 35 25.205 0 0.644 0.877 25.205 0.000 0.000 23.773 LGA T 36 T 36 24.237 0 0.077 0.882 24.781 0.000 0.000 22.953 LGA K 37 K 37 26.313 0 0.639 1.532 29.037 0.000 0.000 29.037 LGA Y 38 Y 38 23.906 0 0.101 1.333 25.908 0.000 0.000 19.634 LGA T 39 T 39 25.259 0 0.147 0.976 26.514 0.000 0.000 26.514 LGA L 40 L 40 25.078 0 0.137 1.347 28.143 0.000 0.000 28.143 LGA C 41 C 41 26.231 0 0.241 0.848 28.411 0.000 0.000 28.411 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 14.730 14.527 15.455 26.408 19.893 9.135 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.71 40.244 37.818 0.941 LGA_LOCAL RMSD: 1.707 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 21.420 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 14.730 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.038682 * X + -0.973080 * Y + 0.227197 * Z + 10.992219 Y_new = 0.808554 * X + -0.103118 * Y + -0.579316 * Z + -0.858577 Z_new = 0.587149 * X + 0.206110 * Y + 0.782799 * Z + 2.904286 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.522992 -0.627532 0.257455 [DEG: 87.2610 -35.9549 14.7511 ] ZXZ: 0.373748 0.671645 1.233199 [DEG: 21.4142 38.4824 70.6571 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS407_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.71 37.818 14.73 REMARK ---------------------------------------------------------- MOLECULE T0955TS407_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 CB SER 1 -2.930 -14.634 0.765 1.00 0.00 C ATOM 2 OG SER 1 -3.725 -15.348 -0.165 1.00 0.00 O ATOM 4 C SER 1 -0.998 -13.062 1.087 1.00 0.00 C ATOM 5 O SER 1 -1.315 -11.899 1.358 1.00 0.00 O ATOM 8 N SER 1 -0.931 -14.802 -0.692 1.00 0.00 N ATOM 10 CA SER 1 -1.810 -13.862 0.060 1.00 0.00 C ATOM 11 N GLN 2 0.046 -13.697 1.641 1.00 0.00 N ATOM 13 CA GLN 2 0.958 -13.111 2.650 1.00 0.00 C ATOM 14 CB GLN 2 1.824 -14.202 3.297 1.00 0.00 C ATOM 15 CG GLN 2 1.062 -15.184 4.181 1.00 0.00 C ATOM 16 CD GLN 2 1.962 -16.248 4.782 1.00 0.00 C ATOM 17 OE1 GLN 2 2.136 -17.324 4.210 1.00 0.00 O ATOM 18 NE2 GLN 2 2.539 -15.952 5.942 1.00 0.00 N ATOM 21 C GLN 2 1.862 -11.991 2.103 1.00 0.00 C ATOM 22 O GLN 2 2.096 -10.991 2.793 1.00 0.00 O ATOM 23 N GLU 3 2.327 -12.160 0.855 1.00 0.00 N ATOM 25 CA GLU 3 3.210 -11.202 0.154 1.00 0.00 C ATOM 26 CB GLU 3 3.835 -11.841 -1.110 1.00 0.00 C ATOM 27 CG GLU 3 2.882 -12.605 -2.058 1.00 0.00 C ATOM 28 CD GLU 3 3.601 -13.195 -3.256 1.00 0.00 C ATOM 29 OE1 GLU 3 3.699 -12.504 -4.293 1.00 0.00 O ATOM 30 OE2 GLU 3 4.064 -14.352 -3.164 1.00 0.00 O ATOM 31 C GLU 3 2.551 -9.845 -0.173 1.00 0.00 C ATOM 32 O GLU 3 3.160 -8.792 0.055 1.00 0.00 O ATOM 33 N THR 4 1.303 -9.890 -0.663 1.00 0.00 N ATOM 35 CA THR 4 0.505 -8.695 -1.019 1.00 0.00 C ATOM 36 CB THR 4 -0.748 -9.065 -1.918 1.00 0.00 C ATOM 37 OG1 THR 4 -1.552 -7.899 -2.145 1.00 0.00 O ATOM 39 CG2 THR 4 -1.610 -10.187 -1.300 1.00 0.00 C ATOM 40 C THR 4 0.110 -7.876 0.235 1.00 0.00 C ATOM 41 O THR 4 0.114 -6.638 0.198 1.00 0.00 O ATOM 42 N ARG 5 -0.193 -8.589 1.331 1.00 0.00 N ATOM 44 CA ARG 5 -0.573 -8.003 2.634 1.00 0.00 C ATOM 45 CB ARG 5 -1.158 -9.073 3.568 1.00 0.00 C ATOM 46 CG ARG 5 -2.563 -9.546 3.186 1.00 0.00 C ATOM 47 CD ARG 5 -3.104 -10.601 4.150 1.00 0.00 C ATOM 48 NE ARG 5 -2.413 -11.888 4.035 1.00 0.00 N ATOM 50 CZ ARG 5 -2.711 -12.985 4.733 1.00 0.00 C ATOM 51 NH1 ARG 5 -2.010 -14.094 4.539 1.00 0.00 N ATOM 54 NH2 ARG 5 -3.701 -12.988 5.621 1.00 0.00 N ATOM 57 C ARG 5 0.610 -7.291 3.315 1.00 0.00 C ATOM 58 O ARG 5 0.447 -6.174 3.821 1.00 0.00 O ATOM 59 N LYS 6 1.794 -7.924 3.275 1.00 0.00 N ATOM 61 CA LYS 6 3.044 -7.389 3.857 1.00 0.00 C ATOM 62 CB LYS 6 4.137 -8.465 3.895 1.00 0.00 C ATOM 63 CG LYS 6 3.941 -9.528 4.971 1.00 0.00 C ATOM 64 CD LYS 6 5.063 -10.560 4.943 1.00 0.00 C ATOM 65 CE LYS 6 4.880 -11.637 6.010 1.00 0.00 C ATOM 66 NZ LYS 6 3.725 -12.546 5.748 1.00 0.00 N ATOM 70 C LYS 6 3.543 -6.153 3.088 1.00 0.00 C ATOM 71 O LYS 6 3.986 -5.176 3.705 1.00 0.00 O ATOM 72 N LYS 7 3.429 -6.199 1.751 1.00 0.00 N ATOM 74 CA LYS 7 3.826 -5.104 0.841 1.00 0.00 C ATOM 75 CB LYS 7 3.839 -5.576 -0.619 1.00 0.00 C ATOM 76 CG LYS 7 5.041 -6.436 -0.989 1.00 0.00 C ATOM 77 CD LYS 7 4.989 -6.860 -2.453 1.00 0.00 C ATOM 78 CE LYS 7 6.187 -7.723 -2.844 1.00 0.00 C ATOM 79 NZ LYS 7 7.482 -6.979 -2.850 1.00 0.00 N ATOM 83 C LYS 7 2.899 -3.887 0.994 1.00 0.00 C ATOM 84 O LYS 7 3.362 -2.742 0.931 1.00 0.00 O ATOM 85 N CYS 8 1.603 -4.155 1.221 1.00 0.00 N ATOM 87 CA CYS 8 0.554 -3.131 1.415 1.00 0.00 C ATOM 88 CB CYS 8 -0.839 -3.776 1.374 1.00 0.00 C ATOM 89 SG CYS 8 -2.228 -2.611 1.370 1.00 0.00 S ATOM 90 C CYS 8 0.752 -2.370 2.742 1.00 0.00 C ATOM 91 O CYS 8 0.607 -1.142 2.775 1.00 0.00 O ATOM 92 N THR 9 1.112 -3.107 3.807 1.00 0.00 N ATOM 94 CA THR 9 1.364 -2.550 5.154 1.00 0.00 C ATOM 95 CB THR 9 1.471 -3.680 6.235 1.00 0.00 C ATOM 96 OG1 THR 9 0.520 -4.710 5.940 1.00 0.00 O ATOM 98 CG2 THR 9 1.158 -3.140 7.643 1.00 0.00 C ATOM 99 C THR 9 2.650 -1.687 5.133 1.00 0.00 C ATOM 100 O THR 9 2.686 -0.617 5.753 1.00 0.00 O ATOM 101 N GLU 10 3.665 -2.142 4.380 1.00 0.00 N ATOM 103 CA GLU 10 4.959 -1.444 4.222 1.00 0.00 C ATOM 104 CB GLU 10 5.995 -2.352 3.548 1.00 0.00 C ATOM 105 CG GLU 10 6.573 -3.433 4.457 1.00 0.00 C ATOM 106 CD GLU 10 7.584 -4.317 3.749 1.00 0.00 C ATOM 107 OE1 GLU 10 7.176 -5.353 3.183 1.00 0.00 O ATOM 108 OE2 GLU 10 8.786 -3.978 3.762 1.00 0.00 O ATOM 109 C GLU 10 4.812 -0.132 3.432 1.00 0.00 C ATOM 110 O GLU 10 5.422 0.879 3.796 1.00 0.00 O ATOM 111 N MET 11 3.974 -0.158 2.382 1.00 0.00 N ATOM 113 CA MET 11 3.685 1.006 1.517 1.00 0.00 C ATOM 114 CG MET 11 3.799 -0.096 -0.806 1.00 0.00 C ATOM 115 SD MET 11 2.874 -0.585 -2.279 1.00 0.00 S ATOM 116 CE MET 11 3.310 0.733 -3.424 1.00 0.00 C ATOM 117 C MET 11 2.889 2.091 2.264 1.00 0.00 C ATOM 118 O MET 11 3.158 3.283 2.089 1.00 0.00 O ATOM 119 CB MET 11 2.930 0.578 0.252 1.00 0.00 C ATOM 120 N LYS 12 1.938 1.655 3.107 1.00 0.00 N ATOM 122 CA LYS 12 1.082 2.539 3.928 1.00 0.00 C ATOM 123 CB LYS 12 -0.091 1.758 4.537 1.00 0.00 C ATOM 124 CG LYS 12 -1.194 1.402 3.545 1.00 0.00 C ATOM 125 CD LYS 12 -2.316 0.625 4.216 1.00 0.00 C ATOM 126 CE LYS 12 -3.410 0.268 3.223 1.00 0.00 C ATOM 127 NZ LYS 12 -4.516 -0.498 3.862 1.00 0.00 N ATOM 131 C LYS 12 1.879 3.248 5.039 1.00 0.00 C ATOM 132 O LYS 12 1.646 4.431 5.308 1.00 0.00 O ATOM 133 N LYS 13 2.809 2.509 5.668 1.00 0.00 N ATOM 135 CA LYS 13 3.696 3.013 6.740 1.00 0.00 C ATOM 136 CB LYS 13 4.394 1.853 7.463 1.00 0.00 C ATOM 137 CG LYS 13 3.489 1.044 8.385 1.00 0.00 C ATOM 138 CD LYS 13 4.254 -0.090 9.058 1.00 0.00 C ATOM 139 CE LYS 13 3.366 -0.914 9.987 1.00 0.00 C ATOM 140 NZ LYS 13 2.910 -0.169 11.200 1.00 0.00 N ATOM 144 C LYS 13 4.742 4.014 6.212 1.00 0.00 C ATOM 145 O LYS 13 5.004 5.034 6.858 1.00 0.00 O ATOM 146 N LYS 14 5.322 3.702 5.042 1.00 0.29 N ATOM 148 CA LYS 14 6.335 4.529 4.350 1.00 0.29 C ATOM 149 CB LYS 14 7.027 3.729 3.238 1.00 0.29 C ATOM 150 CG LYS 14 8.047 2.711 3.737 1.00 0.29 C ATOM 151 CD LYS 14 8.685 1.956 2.583 1.00 0.29 C ATOM 152 CE LYS 14 9.699 0.940 3.083 1.00 0.29 C ATOM 153 NZ LYS 14 10.336 0.194 1.964 1.00 0.29 N ATOM 157 C LYS 14 5.775 5.844 3.777 1.00 0.29 C ATOM 158 O LYS 14 6.466 6.869 3.788 1.00 0.29 O ATOM 159 N PHE 15 4.523 5.792 3.293 1.00 0.68 N ATOM 161 CA PHE 15 3.794 6.935 2.699 1.00 0.68 C ATOM 162 CB PHE 15 2.474 6.442 2.045 1.00 0.68 C ATOM 163 CG PHE 15 1.963 7.306 0.885 1.00 0.68 C ATOM 164 CD1 PHE 15 2.354 7.033 -0.449 1.00 0.68 C ATOM 165 CD2 PHE 15 1.060 8.371 1.117 1.00 0.68 C ATOM 166 CE1 PHE 15 1.856 7.807 -1.534 1.00 0.68 C ATOM 167 CE2 PHE 15 0.554 9.154 0.043 1.00 0.68 C ATOM 168 CZ PHE 15 0.953 8.870 -1.286 1.00 0.68 C ATOM 169 C PHE 15 3.499 8.051 3.727 1.00 0.68 C ATOM 170 O PHE 15 3.526 9.237 3.376 1.00 0.68 O ATOM 171 N LYS 16 3.225 7.652 4.978 1.00 0.71 N ATOM 173 CA LYS 16 2.918 8.562 6.105 1.00 0.71 C ATOM 174 CB LYS 16 2.322 7.773 7.282 1.00 0.71 C ATOM 175 CG LYS 16 0.925 7.211 7.034 1.00 0.71 C ATOM 176 CD LYS 16 0.417 6.444 8.244 1.00 0.71 C ATOM 177 CE LYS 16 -0.974 5.883 7.996 1.00 0.71 C ATOM 178 NZ LYS 16 -1.487 5.130 9.172 1.00 0.71 N ATOM 182 C LYS 16 4.146 9.369 6.579 1.00 0.71 C ATOM 183 O LYS 16 5.282 8.992 6.270 1.00 0.71 O ATOM 184 N ASN 17 3.900 10.454 7.338 1.00 0.70 N ATOM 186 CA ASN 17 4.899 11.407 7.905 1.00 0.70 C ATOM 187 CB ASN 17 5.475 10.940 9.275 1.00 0.70 C ATOM 188 CG ASN 17 6.169 9.575 9.218 1.00 0.70 C ATOM 189 OD1 ASN 17 5.540 8.536 9.434 1.00 0.70 O ATOM 190 ND2 ASN 17 7.469 9.579 8.938 1.00 0.70 N ATOM 193 C ASN 17 6.012 11.951 6.974 1.00 0.70 C ATOM 194 O ASN 17 6.670 11.177 6.269 1.00 0.70 O ATOM 195 N CYS 18 6.209 13.277 7.005 1.00 1.00 N ATOM 197 CA CYS 18 7.207 13.987 6.184 1.00 1.00 C ATOM 198 CB CYS 18 6.663 15.360 5.769 1.00 1.00 C ATOM 199 SG CYS 18 6.153 16.422 7.143 1.00 1.00 S ATOM 200 C CYS 18 8.589 14.145 6.846 1.00 1.00 C ATOM 201 O CYS 18 9.606 14.214 6.143 1.00 1.00 O ATOM 202 N GLU 19 8.613 14.180 8.186 1.00 2.15 N ATOM 204 CA GLU 19 9.851 14.331 8.976 1.00 2.15 C ATOM 205 CB GLU 19 9.649 15.343 10.140 1.00 2.15 C ATOM 206 CG GLU 19 8.404 15.162 11.063 1.00 2.15 C ATOM 207 CD GLU 19 7.190 15.977 10.625 1.00 2.15 C ATOM 208 OE1 GLU 19 6.322 15.420 9.921 1.00 2.15 O ATOM 209 OE2 GLU 19 7.108 17.169 10.989 1.00 2.15 O ATOM 210 C GLU 19 10.458 13.002 9.482 1.00 2.15 C ATOM 211 O GLU 19 9.758 12.191 10.102 1.00 2.15 O ATOM 212 N VAL 20 11.749 12.798 9.183 1.00 2.21 N ATOM 214 CA VAL 20 12.522 11.600 9.574 1.00 2.21 C ATOM 215 CB VAL 20 12.919 10.693 8.333 1.00 2.21 C ATOM 216 CG1 VAL 20 11.709 9.899 7.867 1.00 2.21 C ATOM 217 CG2 VAL 20 13.473 11.532 7.156 1.00 2.21 C ATOM 218 C VAL 20 13.773 11.969 10.399 1.00 2.21 C ATOM 219 O VAL 20 14.407 12.999 10.133 1.00 2.21 O ATOM 220 N ARG 21 14.092 11.141 11.404 1.00 2.33 N ATOM 222 CA ARG 21 15.255 11.335 12.292 1.00 2.33 C ATOM 223 CB ARG 21 14.829 11.334 13.770 1.00 2.33 C ATOM 224 CG ARG 21 14.011 12.555 14.199 1.00 2.33 C ATOM 225 CD ARG 21 13.640 12.512 15.681 1.00 2.33 C ATOM 226 NE ARG 21 12.653 11.474 15.992 1.00 2.33 N ATOM 228 CZ ARG 21 12.126 11.252 17.197 1.00 2.33 C ATOM 229 NH1 ARG 21 11.238 10.280 17.353 1.00 2.33 N ATOM 232 NH2 ARG 21 12.474 11.991 18.247 1.00 2.33 N ATOM 235 C ARG 21 16.342 10.271 12.050 1.00 2.33 C ATOM 236 O ARG 21 16.042 9.068 12.015 1.00 2.33 O ATOM 237 N CYS 22 17.584 10.734 11.848 1.00 2.00 N ATOM 239 CA CYS 22 18.761 9.880 11.602 1.00 2.00 C ATOM 240 CB CYS 22 19.395 10.217 10.244 1.00 2.00 C ATOM 241 SG CYS 22 20.732 9.110 9.721 1.00 2.00 S ATOM 242 C CYS 22 19.792 10.073 12.725 1.00 2.00 C ATOM 243 O CYS 22 20.481 9.119 13.104 1.00 2.00 O ATOM 244 N ASP 23 19.871 11.310 13.249 1.00 2.15 N ATOM 246 CA ASP 23 20.781 11.760 14.338 1.00 2.15 C ATOM 247 CB ASP 23 20.334 11.232 15.721 1.00 2.15 C ATOM 248 CG ASP 23 18.980 11.783 16.157 1.00 2.15 C ATOM 249 OD1 ASP 23 17.947 11.141 15.863 1.00 2.15 O ATOM 250 OD2 ASP 23 18.948 12.850 16.809 1.00 2.15 O ATOM 251 C ASP 23 22.292 11.521 14.142 1.00 2.15 C ATOM 252 O ASP 23 22.708 10.423 13.753 1.00 2.15 O ATOM 253 N GLU 24 23.092 12.565 14.428 1.00 1.47 N ATOM 255 CA GLU 24 24.581 12.623 14.334 1.00 1.47 C ATOM 256 CB GLU 24 25.260 12.265 15.691 1.00 1.47 C ATOM 257 CG GLU 24 24.950 10.887 16.313 1.00 1.47 C ATOM 258 CD GLU 24 25.679 10.661 17.624 1.00 1.47 C ATOM 259 OE1 GLU 24 26.813 10.139 17.594 1.00 1.47 O ATOM 260 OE2 GLU 24 25.117 11.005 18.686 1.00 1.47 O ATOM 261 C GLU 24 25.333 11.989 13.124 1.00 1.47 C ATOM 262 O GLU 24 26.572 12.041 13.066 1.00 1.47 O ATOM 263 N SER 25 24.578 11.450 12.154 1.00 1.33 N ATOM 265 CA SER 25 25.131 10.812 10.946 1.00 1.33 C ATOM 266 CB SER 25 24.535 9.401 10.763 1.00 1.33 C ATOM 267 OG SER 25 25.153 8.701 9.695 1.00 1.33 O ATOM 269 C SER 25 24.918 11.695 9.693 1.00 1.33 C ATOM 270 O SER 25 25.773 12.535 9.389 1.00 1.33 O ATOM 271 N ASN 26 23.784 11.509 8.990 1.00 1.15 N ATOM 273 CA ASN 26 23.371 12.247 7.763 1.00 1.15 C ATOM 274 CB ASN 26 22.823 13.652 8.118 1.00 1.15 C ATOM 275 CG ASN 26 21.553 13.598 8.961 1.00 1.15 C ATOM 276 OD1 ASN 26 21.611 13.589 10.193 1.00 1.15 O ATOM 277 ND2 ASN 26 20.400 13.580 8.299 1.00 1.15 N ATOM 280 C ASN 26 24.376 12.335 6.584 1.00 1.15 C ATOM 281 O ASN 26 24.090 12.991 5.570 1.00 1.15 O ATOM 282 N HIS 27 25.513 11.632 6.701 1.00 1.26 N ATOM 284 CA HIS 27 26.572 11.618 5.671 1.00 1.26 C ATOM 285 CG HIS 27 28.264 10.537 7.287 1.00 1.26 C ATOM 286 CD2 HIS 27 29.034 9.427 7.170 1.00 1.26 C ATOM 287 ND1 HIS 27 27.740 10.502 8.561 1.00 1.26 N ATOM 289 CE1 HIS 27 28.171 9.422 9.188 1.00 1.26 C ATOM 290 NE2 HIS 27 28.958 8.752 8.365 1.00 1.26 N ATOM 292 C HIS 27 26.465 10.478 4.633 1.00 1.26 C ATOM 293 O HIS 27 26.558 10.734 3.426 1.00 1.26 O ATOM 294 CB HIS 27 27.983 11.654 6.318 1.00 1.26 C ATOM 295 N CYS 28 26.273 9.242 5.118 1.00 1.51 N ATOM 297 CA CYS 28 26.153 8.037 4.276 1.00 1.51 C ATOM 298 CB CYS 28 27.120 6.946 4.760 1.00 1.51 C ATOM 299 SG CYS 28 26.944 6.487 6.503 1.00 1.51 S ATOM 300 C CYS 28 24.717 7.486 4.230 1.00 1.51 C ATOM 301 O CYS 28 24.012 7.498 5.249 1.00 1.51 O ATOM 302 N VAL 29 24.300 7.030 3.039 1.00 1.60 N ATOM 304 CA VAL 29 22.959 6.458 2.788 1.00 1.60 C ATOM 305 CB VAL 29 22.187 7.221 1.630 1.00 1.60 C ATOM 306 CG1 VAL 29 20.678 6.919 1.676 1.00 1.60 C ATOM 307 CG2 VAL 29 22.410 8.732 1.727 1.00 1.60 C ATOM 308 C VAL 29 23.141 4.967 2.417 1.00 1.60 C ATOM 309 O VAL 29 24.119 4.607 1.747 1.00 1.60 O ATOM 310 N GLU 30 22.214 4.122 2.890 1.00 1.55 N ATOM 312 CA GLU 30 22.217 2.667 2.642 1.00 1.55 C ATOM 313 CB GLU 30 22.234 1.868 3.975 1.00 1.55 C ATOM 314 CG GLU 30 21.240 2.291 5.098 1.00 1.55 C ATOM 315 CD GLU 30 19.953 1.473 5.112 1.00 1.55 C ATOM 316 OE1 GLU 30 18.980 1.880 4.444 1.00 1.55 O ATOM 317 OE2 GLU 30 19.921 0.424 5.792 1.00 1.55 O ATOM 318 C GLU 30 21.057 2.209 1.736 1.00 1.55 C ATOM 319 O GLU 30 19.942 2.735 1.845 1.00 1.55 O ATOM 320 N VAL 31 21.340 1.238 0.852 1.00 1.49 N ATOM 322 CA VAL 31 20.360 0.668 -0.095 1.00 1.49 C ATOM 323 CB VAL 31 20.864 0.814 -1.613 1.00 1.49 C ATOM 324 CG1 VAL 31 22.154 0.012 -1.881 1.00 1.49 C ATOM 325 CG2 VAL 31 19.751 0.469 -2.618 1.00 1.49 C ATOM 326 C VAL 31 19.995 -0.789 0.306 1.00 1.49 C ATOM 327 O VAL 31 20.887 -1.614 0.544 1.00 1.49 O ATOM 328 N ARG 32 18.686 -1.059 0.408 1.00 1.43 N ATOM 330 CA ARG 32 18.135 -2.377 0.776 1.00 1.43 C ATOM 331 CB ARG 32 17.410 -2.296 2.134 1.00 1.43 C ATOM 332 CG ARG 32 17.575 -3.529 3.039 1.00 1.43 C ATOM 333 CD ARG 32 16.864 -3.360 4.381 1.00 1.43 C ATOM 334 NE ARG 32 17.508 -2.366 5.245 1.00 1.43 N ATOM 336 CZ ARG 32 17.091 -2.020 6.463 1.00 1.43 C ATOM 337 NH1 ARG 32 17.762 -1.105 7.149 1.00 1.43 N ATOM 340 NH2 ARG 32 16.012 -2.577 7.005 1.00 1.43 N ATOM 343 C ARG 32 17.163 -2.845 -0.324 1.00 1.43 C ATOM 344 O ARG 32 16.440 -2.024 -0.903 1.00 1.43 O ATOM 345 N CYS 33 17.173 -4.156 -0.606 1.00 1.29 N ATOM 347 CA CYS 33 16.311 -4.792 -1.620 1.00 1.29 C ATOM 348 CB CYS 33 17.157 -5.625 -2.598 1.00 1.29 C ATOM 349 SG CYS 33 16.254 -6.294 -4.021 1.00 1.29 S ATOM 350 C CYS 33 15.244 -5.673 -0.944 1.00 1.29 C ATOM 351 O CYS 33 15.564 -6.448 -0.031 1.00 1.29 O ATOM 352 N SER 34 13.985 -5.517 -1.379 1.00 1.33 N ATOM 354 CA SER 34 12.830 -6.267 -0.853 1.00 1.33 C ATOM 355 CB SER 34 11.788 -5.305 -0.263 1.00 1.33 C ATOM 356 OG SER 34 12.337 -4.543 0.799 1.00 1.33 O ATOM 358 C SER 34 12.173 -7.139 -1.934 1.00 1.33 C ATOM 359 O SER 34 11.676 -8.230 -1.629 1.00 1.33 O ATOM 360 N ASP 35 12.185 -6.649 -3.183 1.00 1.40 N ATOM 362 CA ASP 35 11.597 -7.340 -4.347 1.00 1.40 C ATOM 363 CB ASP 35 10.758 -6.347 -5.179 1.00 1.40 C ATOM 364 CG ASP 35 9.607 -7.019 -5.935 1.00 1.40 C ATOM 365 OD1 ASP 35 8.486 -7.085 -5.385 1.00 1.40 O ATOM 366 OD2 ASP 35 9.823 -7.466 -7.083 1.00 1.40 O ATOM 367 C ASP 35 12.698 -7.973 -5.222 1.00 1.40 C ATOM 368 O ASP 35 13.820 -7.457 -5.276 1.00 1.40 O ATOM 369 N THR 36 12.345 -9.076 -5.909 1.00 1.47 N ATOM 371 CA THR 36 13.204 -9.884 -6.822 1.00 1.47 C ATOM 372 CB THR 36 13.347 -9.248 -8.254 1.00 1.47 C ATOM 373 OG1 THR 36 13.820 -7.901 -8.138 1.00 1.47 O ATOM 375 CG2 THR 36 12.011 -9.259 -8.989 1.00 1.47 C ATOM 376 C THR 36 14.593 -10.333 -6.310 1.00 1.47 C ATOM 377 O THR 36 15.330 -9.538 -5.709 1.00 1.47 O ATOM 378 N LYS 37 14.916 -11.615 -6.537 1.00 1.77 N ATOM 380 CA LYS 37 16.190 -12.238 -6.128 1.00 1.77 C ATOM 381 CB LYS 37 15.932 -13.479 -5.255 1.00 1.77 C ATOM 382 CG LYS 37 15.342 -13.183 -3.880 1.00 1.77 C ATOM 383 CD LYS 37 15.105 -14.461 -3.093 1.00 1.77 C ATOM 384 CE LYS 37 14.514 -14.167 -1.725 1.00 1.77 C ATOM 385 NZ LYS 37 14.271 -15.412 -0.947 1.00 1.77 N ATOM 389 C LYS 37 17.035 -12.631 -7.350 1.00 1.77 C ATOM 390 O LYS 37 18.265 -12.730 -7.250 1.00 1.77 O ATOM 391 N TYR 38 16.362 -12.823 -8.498 1.00 2.20 N ATOM 393 CA TYR 38 16.943 -13.214 -9.813 1.00 2.20 C ATOM 394 CB TYR 38 17.839 -12.092 -10.416 1.00 2.20 C ATOM 395 CG TYR 38 17.158 -10.752 -10.716 1.00 2.20 C ATOM 396 CD1 TYR 38 17.161 -9.701 -9.765 1.00 2.20 C ATOM 397 CE1 TYR 38 16.566 -8.442 -10.055 1.00 2.20 C ATOM 398 CD2 TYR 38 16.542 -10.508 -11.969 1.00 2.20 C ATOM 399 CE2 TYR 38 15.944 -9.252 -12.266 1.00 2.20 C ATOM 400 CZ TYR 38 15.962 -8.229 -11.305 1.00 2.20 C ATOM 401 OH TYR 38 15.385 -7.013 -11.590 1.00 2.20 O ATOM 403 C TYR 38 17.694 -14.561 -9.846 1.00 2.20 C ATOM 404 O TYR 38 18.492 -14.853 -8.944 1.00 2.20 O ATOM 405 N THR 39 17.416 -15.366 -10.882 1.00 1.94 N ATOM 407 CA THR 39 18.028 -16.693 -11.094 1.00 1.94 C ATOM 408 CB THR 39 16.948 -17.807 -11.299 1.00 1.94 C ATOM 409 OG1 THR 39 16.004 -17.391 -12.295 1.00 1.94 O ATOM 411 CG2 THR 39 16.216 -18.100 -9.994 1.00 1.94 C ATOM 412 C THR 39 18.996 -16.685 -12.293 1.00 1.94 C ATOM 413 O THR 39 18.743 -16.001 -13.294 1.00 1.94 O ATOM 414 N LEU 40 20.113 -17.418 -12.158 1.00 1.72 N ATOM 416 CA LEU 40 21.155 -17.536 -13.195 1.00 1.72 C ATOM 417 CB LEU 40 22.547 -17.127 -12.639 1.00 1.72 C ATOM 418 CG LEU 40 23.193 -17.565 -11.299 1.00 1.72 C ATOM 419 CD1 LEU 40 24.705 -17.562 -11.457 1.00 1.72 C ATOM 420 CD2 LEU 40 22.773 -16.674 -10.119 1.00 1.72 C ATOM 421 C LEU 40 21.204 -18.935 -13.840 1.00 1.72 C ATOM 422 O LEU 40 21.004 -19.943 -13.149 1.00 1.72 O ATOM 423 N CYS 41 21.468 -18.974 -15.154 1.00 1.55 N ATOM 425 CA CYS 41 21.556 -20.215 -15.946 1.00 1.55 C ATOM 426 CB CYS 41 20.666 -20.113 -17.196 1.00 1.55 C ATOM 427 SG CYS 41 20.500 -21.645 -18.152 1.00 1.55 S ATOM 428 C CYS 41 23.005 -20.501 -16.351 1.00 1.55 C ATOM 429 O CYS 41 23.367 -21.693 -16.443 1.00 1.55 O ATOM 430 OXT CYS 41 23.762 -19.527 -16.561 1.00 1.55 O TER END