####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS407_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 1 - 20 4.65 20.93 LCS_AVERAGE: 43.07 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.59 19.36 LCS_AVERAGE: 26.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 1 - 14 0.98 19.29 LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.82 19.04 LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 0.97 18.83 LCS_AVERAGE: 20.46 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 14 17 20 3 3 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 20 20 21 LCS_GDT Q 2 Q 2 14 17 20 3 11 13 14 16 16 16 17 17 17 17 18 18 19 20 20 20 20 20 21 LCS_GDT E 3 E 3 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 20 21 22 LCS_GDT T 4 T 4 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 20 20 21 LCS_GDT R 5 R 5 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 20 20 21 LCS_GDT K 6 K 6 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 21 22 23 LCS_GDT K 7 K 7 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 21 22 23 LCS_GDT C 8 C 8 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 20 21 23 LCS_GDT T 9 T 9 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 18 19 20 20 20 21 22 23 LCS_GDT E 10 E 10 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT M 11 M 11 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT K 12 K 12 14 17 20 10 12 14 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT K 13 K 13 14 17 20 8 12 14 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT K 14 K 14 14 17 20 4 12 14 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT F 15 F 15 14 17 20 3 11 14 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT K 16 K 16 14 17 20 3 5 7 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT N 17 N 17 5 17 20 3 4 6 6 15 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT C 18 C 18 5 8 20 3 5 6 6 7 9 10 11 14 17 17 18 19 19 20 20 20 21 22 23 LCS_GDT E 19 E 19 5 8 20 3 5 6 6 7 9 9 11 12 14 16 17 19 19 20 20 20 21 22 23 LCS_GDT V 20 V 20 5 8 20 3 5 6 6 7 9 9 11 12 14 15 17 19 19 20 20 20 21 22 23 LCS_GDT R 21 R 21 5 8 19 3 5 6 6 7 9 9 11 12 14 15 17 19 19 19 19 20 21 22 23 LCS_GDT C 22 C 22 5 8 19 3 5 6 6 7 9 9 11 12 14 14 17 19 19 19 19 20 21 22 23 LCS_GDT D 23 D 23 4 5 19 3 4 4 4 5 7 9 11 12 14 15 17 19 19 19 19 20 21 22 23 LCS_GDT E 24 E 24 4 5 19 3 4 4 4 5 7 9 11 12 14 15 17 19 19 19 19 20 21 22 23 LCS_GDT S 25 S 25 3 6 19 3 3 3 5 5 7 9 10 12 12 15 17 19 19 19 19 20 21 22 23 LCS_GDT N 26 N 26 3 7 19 3 3 4 5 7 9 9 10 12 14 15 17 19 19 19 19 20 21 22 23 LCS_GDT H 27 H 27 4 7 19 3 4 4 5 6 9 9 10 12 14 15 17 19 19 19 19 20 21 22 23 LCS_GDT C 28 C 28 4 7 19 3 4 4 5 7 9 9 10 10 14 15 17 19 19 19 19 20 21 22 23 LCS_GDT V 29 V 29 5 7 16 3 4 5 6 7 9 9 10 10 11 12 12 13 13 14 15 15 16 20 23 LCS_GDT E 30 E 30 5 7 14 4 5 5 6 6 7 9 10 10 11 12 12 13 13 14 18 20 21 22 23 LCS_GDT V 31 V 31 5 7 14 4 5 5 6 7 9 9 10 10 11 12 12 13 13 14 18 20 21 22 23 LCS_GDT R 32 R 32 5 7 14 4 5 5 6 7 9 9 10 10 11 12 13 15 15 16 18 20 21 22 23 LCS_GDT C 33 C 33 6 7 14 4 5 6 6 7 9 9 10 10 11 12 12 15 15 16 18 20 21 22 23 LCS_GDT S 34 S 34 6 7 14 5 5 6 6 7 9 9 10 10 11 12 13 15 15 16 18 20 21 22 23 LCS_GDT D 35 D 35 6 7 14 5 5 6 6 7 9 9 10 10 11 12 13 15 15 16 18 20 21 22 23 LCS_GDT T 36 T 36 6 6 14 5 5 6 6 6 7 8 9 9 9 11 13 15 15 16 18 20 21 22 23 LCS_GDT K 37 K 37 6 6 14 5 5 6 6 6 7 8 9 9 9 9 11 13 15 16 18 20 21 22 23 LCS_GDT Y 38 Y 38 6 6 11 5 5 6 6 6 7 8 9 9 9 9 9 10 10 10 12 16 18 18 21 LCS_GDT T 39 T 39 4 5 11 3 4 5 5 6 7 8 9 9 9 9 9 10 10 10 12 13 13 13 14 LCS_GDT L 40 L 40 4 5 11 3 4 5 5 5 7 8 9 9 9 9 9 10 10 10 10 10 10 11 13 LCS_GDT C 41 C 41 4 5 11 3 4 5 5 5 5 8 9 9 9 9 9 10 10 10 10 10 10 11 11 LCS_AVERAGE LCS_A: 30.06 ( 20.46 26.65 43.07 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 14 15 16 16 16 17 17 17 17 18 19 19 20 20 20 21 22 23 GDT PERCENT_AT 24.39 29.27 34.15 36.59 39.02 39.02 39.02 41.46 41.46 41.46 41.46 43.90 46.34 46.34 48.78 48.78 48.78 51.22 53.66 56.10 GDT RMS_LOCAL 0.34 0.59 0.87 1.04 1.17 1.17 1.17 1.59 1.59 1.59 1.59 2.63 4.71 3.73 4.65 4.65 4.65 5.61 6.04 6.38 GDT RMS_ALL_AT 19.49 19.21 19.06 18.88 18.93 18.93 18.93 19.36 19.36 19.36 19.36 19.95 17.93 20.60 20.93 20.93 20.93 18.11 18.37 18.26 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 1.960 0 0.065 0.103 3.329 50.455 45.152 3.115 LGA Q 2 Q 2 2.026 0 0.284 0.929 7.343 58.636 28.687 7.343 LGA E 3 E 3 0.502 0 0.055 1.219 5.927 90.909 58.788 2.985 LGA T 4 T 4 0.692 0 0.025 1.166 3.482 81.818 68.312 3.482 LGA R 5 R 5 0.643 0 0.039 0.789 6.101 90.909 43.802 6.101 LGA K 6 K 6 0.430 0 0.042 1.179 5.961 95.455 56.970 5.645 LGA K 7 K 7 0.377 0 0.026 0.609 1.475 100.000 88.283 1.418 LGA C 8 C 8 0.604 0 0.035 0.046 1.119 86.364 82.121 1.119 LGA T 9 T 9 0.638 0 0.016 0.151 1.287 81.818 79.481 0.666 LGA E 10 E 10 0.473 0 0.029 0.763 3.468 95.455 68.283 3.468 LGA M 11 M 11 0.539 0 0.074 1.350 6.024 86.364 63.864 6.024 LGA K 12 K 12 1.345 0 0.048 0.955 5.992 61.818 43.636 5.992 LGA K 13 K 13 1.559 0 0.045 0.594 3.880 61.818 41.010 2.557 LGA K 14 K 14 0.873 0 0.028 0.109 2.200 77.727 64.646 1.986 LGA F 15 F 15 1.205 0 0.493 0.477 2.131 62.727 61.818 1.328 LGA K 16 K 16 3.182 0 0.201 1.257 10.809 37.273 16.566 10.809 LGA N 17 N 17 3.948 0 0.657 1.175 8.040 15.455 7.727 7.292 LGA C 18 C 18 10.080 0 0.113 0.831 13.082 0.000 0.000 13.082 LGA E 19 E 19 14.928 0 0.297 1.178 20.289 0.000 0.000 20.070 LGA V 20 V 20 17.326 0 0.141 1.066 19.794 0.000 0.000 16.637 LGA R 21 R 21 24.283 0 0.651 1.521 31.535 0.000 0.000 31.535 LGA C 22 C 22 26.464 0 0.649 0.684 29.808 0.000 0.000 24.249 LGA D 23 D 23 28.458 0 0.569 0.560 29.788 0.000 0.000 29.788 LGA E 24 E 24 32.096 0 0.650 0.981 39.382 0.000 0.000 39.382 LGA S 25 S 25 34.475 0 0.064 0.088 36.360 0.000 0.000 33.253 LGA N 26 N 26 35.432 0 0.640 1.299 36.793 0.000 0.000 36.002 LGA H 27 H 27 32.236 0 0.444 0.355 39.055 0.000 0.000 39.055 LGA C 28 C 28 28.144 0 0.068 0.093 29.831 0.000 0.000 27.828 LGA V 29 V 29 27.211 0 0.127 1.041 27.211 0.000 0.000 26.021 LGA E 30 E 30 27.904 0 0.086 0.817 33.964 0.000 0.000 33.964 LGA V 31 V 31 24.844 0 0.074 0.909 26.003 0.000 0.000 24.383 LGA R 32 R 32 25.247 0 0.257 1.033 27.849 0.000 0.000 25.003 LGA C 33 C 33 25.444 0 0.202 0.769 26.090 0.000 0.000 25.004 LGA S 34 S 34 26.436 0 0.509 0.952 26.801 0.000 0.000 25.544 LGA D 35 D 35 26.503 0 0.181 0.274 26.503 0.000 0.000 23.399 LGA T 36 T 36 23.258 0 0.101 0.251 24.135 0.000 0.000 21.996 LGA K 37 K 37 23.989 0 0.550 1.496 28.624 0.000 0.000 28.624 LGA Y 38 Y 38 21.384 0 0.578 1.472 28.543 0.000 0.000 28.543 LGA T 39 T 39 18.870 0 0.571 0.848 19.605 0.000 0.000 18.047 LGA L 40 L 40 17.165 0 0.085 1.346 22.219 0.000 0.000 22.219 LGA C 41 C 41 15.948 0 0.244 0.850 18.620 0.000 0.000 14.981 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 13.781 13.626 14.623 30.122 22.418 10.687 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.59 39.024 36.348 1.007 LGA_LOCAL RMSD: 1.588 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.364 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 13.781 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.314602 * X + -0.947037 * Y + 0.064397 * Z + 9.361545 Y_new = -0.639390 * X + 0.261568 * Y + 0.723023 * Z + -3.218395 Z_new = -0.701574 * X + 0.186290 * Y + -0.687816 * Z + 1.683411 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.028052 0.777604 2.877096 [DEG: -116.1988 44.5534 164.8454 ] ZXZ: 3.052760 2.329272 -1.311254 [DEG: 174.9103 133.4574 -75.1293 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS407_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.59 36.348 13.78 REMARK ---------------------------------------------------------- MOLECULE T0955TS407_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 CB SER 1 -2.185 -15.605 0.094 1.00 0.55 C ATOM 2 OG SER 1 -3.496 -15.898 -0.357 1.00 0.55 O ATOM 4 C SER 1 -0.420 -13.841 0.370 1.00 0.55 C ATOM 5 O SER 1 0.578 -13.997 -0.344 1.00 0.55 O ATOM 8 N SER 1 -1.875 -13.871 -1.651 1.00 0.55 N ATOM 10 CA SER 1 -1.815 -14.145 -0.187 1.00 0.55 C ATOM 11 N GLN 2 -0.368 -13.424 1.648 1.00 0.00 N ATOM 13 CA GLN 2 0.855 -13.062 2.422 1.00 0.00 C ATOM 14 CB GLN 2 1.776 -14.278 2.670 1.00 0.00 C ATOM 15 CG GLN 2 1.188 -15.341 3.589 1.00 0.00 C ATOM 16 CD GLN 2 2.138 -16.500 3.825 1.00 0.00 C ATOM 17 OE1 GLN 2 2.145 -17.474 3.072 1.00 0.00 O ATOM 18 NE2 GLN 2 2.944 -16.401 4.877 1.00 0.00 N ATOM 21 C GLN 2 1.678 -11.867 1.899 1.00 0.00 C ATOM 22 O GLN 2 1.998 -10.956 2.671 1.00 0.00 O ATOM 23 N GLU 3 2.019 -11.892 0.601 1.00 0.00 N ATOM 25 CA GLU 3 2.804 -10.843 -0.087 1.00 0.00 C ATOM 26 CB GLU 3 3.281 -11.338 -1.460 1.00 0.00 C ATOM 27 CG GLU 3 4.319 -12.457 -1.410 1.00 0.00 C ATOM 28 CD GLU 3 4.751 -12.920 -2.789 1.00 0.00 C ATOM 29 OE1 GLU 3 5.735 -12.364 -3.323 1.00 0.00 O ATOM 30 OE2 GLU 3 4.110 -13.841 -3.338 1.00 0.00 O ATOM 31 C GLU 3 2.076 -9.496 -0.251 1.00 0.00 C ATOM 32 O GLU 3 2.698 -8.436 -0.097 1.00 0.00 O ATOM 33 N THR 4 0.765 -9.554 -0.531 1.00 0.00 N ATOM 35 CA THR 4 -0.104 -8.370 -0.732 1.00 0.00 C ATOM 36 CB THR 4 -1.482 -8.766 -1.342 1.00 0.00 C ATOM 37 OG1 THR 4 -2.057 -9.836 -0.582 1.00 0.00 O ATOM 39 CG2 THR 4 -1.330 -9.196 -2.795 1.00 0.00 C ATOM 40 C THR 4 -0.319 -7.531 0.544 1.00 0.00 C ATOM 41 O THR 4 -0.231 -6.296 0.496 1.00 0.00 O ATOM 42 N ARG 5 -0.561 -8.212 1.677 1.00 0.00 N ATOM 44 CA ARG 5 -0.774 -7.576 2.994 1.00 0.00 C ATOM 45 CB ARG 5 -1.380 -8.570 4.014 1.00 0.00 C ATOM 46 CG ARG 5 -0.714 -9.956 4.136 1.00 0.00 C ATOM 47 CD ARG 5 -1.439 -10.824 5.151 1.00 0.00 C ATOM 48 NE ARG 5 -0.814 -12.141 5.297 1.00 0.00 N ATOM 50 CZ ARG 5 -1.302 -13.146 6.025 1.00 0.00 C ATOM 51 NH1 ARG 5 -0.642 -14.295 6.079 1.00 0.00 N ATOM 54 NH2 ARG 5 -2.440 -13.017 6.701 1.00 0.00 N ATOM 57 C ARG 5 0.502 -6.902 3.543 1.00 0.00 C ATOM 58 O ARG 5 0.438 -5.778 4.054 1.00 0.00 O ATOM 59 N LYS 6 1.645 -7.589 3.388 1.00 0.00 N ATOM 61 CA LYS 6 2.972 -7.106 3.826 1.00 0.00 C ATOM 62 CB LYS 6 4.015 -8.231 3.782 1.00 0.00 C ATOM 63 CG LYS 6 3.862 -9.279 4.878 1.00 0.00 C ATOM 64 CD LYS 6 5.057 -10.219 4.913 1.00 0.00 C ATOM 65 CE LYS 6 4.927 -11.241 6.030 1.00 0.00 C ATOM 66 NZ LYS 6 6.143 -12.092 6.151 1.00 0.00 N ATOM 70 C LYS 6 3.457 -5.902 2.998 1.00 0.00 C ATOM 71 O LYS 6 4.021 -4.955 3.559 1.00 0.00 O ATOM 72 N LYS 7 3.202 -5.942 1.681 1.00 0.00 N ATOM 74 CA LYS 7 3.569 -4.876 0.723 1.00 0.00 C ATOM 75 CB LYS 7 3.359 -5.362 -0.722 1.00 0.00 C ATOM 76 CG LYS 7 4.369 -4.834 -1.749 1.00 0.00 C ATOM 77 CD LYS 7 4.067 -5.363 -3.143 1.00 0.00 C ATOM 78 CE LYS 7 5.060 -4.835 -4.165 1.00 0.00 C ATOM 79 NZ LYS 7 4.775 -5.347 -5.535 1.00 0.00 N ATOM 83 C LYS 7 2.725 -3.610 0.998 1.00 0.00 C ATOM 84 O LYS 7 3.234 -2.487 0.893 1.00 0.00 O ATOM 85 N CYS 8 1.451 -3.823 1.363 1.00 0.00 N ATOM 87 CA CYS 8 0.475 -2.760 1.685 1.00 0.00 C ATOM 88 CB CYS 8 -0.938 -3.355 1.777 1.00 0.00 C ATOM 89 SG CYS 8 -2.282 -2.150 1.927 1.00 0.00 S ATOM 90 C CYS 8 0.835 -2.016 2.989 1.00 0.00 C ATOM 91 O CYS 8 0.796 -0.779 3.027 1.00 0.00 O ATOM 92 N THR 9 1.207 -2.781 4.030 1.00 0.00 N ATOM 94 CA THR 9 1.599 -2.255 5.355 1.00 0.00 C ATOM 95 CB THR 9 1.678 -3.397 6.428 1.00 0.00 C ATOM 96 OG1 THR 9 0.629 -4.343 6.190 1.00 0.00 O ATOM 98 CG2 THR 9 1.490 -2.841 7.851 1.00 0.00 C ATOM 99 C THR 9 2.942 -1.486 5.269 1.00 0.00 C ATOM 100 O THR 9 3.079 -0.422 5.881 1.00 0.00 O ATOM 101 N GLU 10 3.894 -2.019 4.487 1.00 0.00 N ATOM 103 CA GLU 10 5.227 -1.413 4.273 1.00 0.00 C ATOM 104 CB GLU 10 6.174 -2.398 3.575 1.00 0.00 C ATOM 105 CG GLU 10 6.717 -3.500 4.477 1.00 0.00 C ATOM 106 CD GLU 10 7.661 -4.440 3.751 1.00 0.00 C ATOM 107 OE1 GLU 10 8.881 -4.168 3.740 1.00 0.00 O ATOM 108 OE2 GLU 10 7.185 -5.452 3.194 1.00 0.00 O ATOM 109 C GLU 10 5.155 -0.100 3.473 1.00 0.00 C ATOM 110 O GLU 10 5.879 0.854 3.781 1.00 0.00 O ATOM 111 N MET 11 4.257 -0.062 2.474 1.00 0.00 N ATOM 113 CA MET 11 4.022 1.106 1.600 1.00 0.00 C ATOM 114 CG MET 11 3.509 1.325 -0.951 1.00 0.00 C ATOM 115 SD MET 11 3.152 3.094 -1.124 1.00 0.00 S ATOM 116 CE MET 11 1.615 3.046 -2.052 1.00 0.00 C ATOM 117 C MET 11 3.386 2.263 2.402 1.00 0.00 C ATOM 118 O MET 11 3.782 3.422 2.236 1.00 0.00 O ATOM 119 CB MET 11 3.126 0.711 0.411 1.00 0.00 C ATOM 120 N LYS 12 2.404 1.927 3.254 1.00 0.00 N ATOM 122 CA LYS 12 1.688 2.882 4.127 1.00 0.00 C ATOM 123 CB LYS 12 0.424 2.244 4.716 1.00 0.00 C ATOM 124 CG LYS 12 -0.739 2.135 3.740 1.00 0.00 C ATOM 125 CD LYS 12 -1.974 1.544 4.412 1.00 0.00 C ATOM 126 CE LYS 12 -3.197 1.566 3.496 1.00 0.00 C ATOM 127 NZ LYS 12 -3.083 0.659 2.316 1.00 0.00 N ATOM 131 C LYS 12 2.562 3.460 5.257 1.00 0.00 C ATOM 132 O LYS 12 2.490 4.661 5.539 1.00 0.00 O ATOM 133 N LYS 13 3.364 2.593 5.894 1.00 0.00 N ATOM 135 CA LYS 13 4.283 2.950 6.998 1.00 0.00 C ATOM 136 CB LYS 13 4.768 1.691 7.731 1.00 0.00 C ATOM 137 CG LYS 13 3.737 1.067 8.663 1.00 0.00 C ATOM 138 CD LYS 13 4.299 -0.155 9.370 1.00 0.00 C ATOM 139 CE LYS 13 3.292 -0.737 10.348 1.00 0.00 C ATOM 140 NZ LYS 13 3.829 -1.937 11.048 1.00 0.00 N ATOM 144 C LYS 13 5.490 3.826 6.604 1.00 0.00 C ATOM 145 O LYS 13 5.791 4.800 7.300 1.00 0.00 O ATOM 146 N LYS 14 6.160 3.470 5.497 1.00 0.00 N ATOM 148 CA LYS 14 7.344 4.186 4.966 1.00 0.00 C ATOM 149 CB LYS 14 8.055 3.342 3.901 1.00 0.00 C ATOM 150 CG LYS 14 8.791 2.123 4.449 1.00 0.00 C ATOM 151 CD LYS 14 9.463 1.331 3.334 1.00 0.00 C ATOM 152 CE LYS 14 10.206 0.106 3.867 1.00 0.00 C ATOM 153 NZ LYS 14 9.302 -0.951 4.412 1.00 0.00 N ATOM 157 C LYS 14 7.059 5.596 4.414 1.00 0.00 C ATOM 158 O LYS 14 7.878 6.507 4.590 1.00 0.00 O ATOM 159 N PHE 15 5.900 5.754 3.757 1.00 0.00 N ATOM 161 CA PHE 15 5.449 7.025 3.159 1.00 0.00 C ATOM 162 CB PHE 15 5.017 6.804 1.684 1.00 0.00 C ATOM 163 CG PHE 15 6.146 6.379 0.744 1.00 0.00 C ATOM 164 CD1 PHE 15 6.438 5.010 0.534 1.00 0.00 C ATOM 165 CD2 PHE 15 6.899 7.345 0.033 1.00 0.00 C ATOM 166 CE1 PHE 15 7.461 4.605 -0.367 1.00 0.00 C ATOM 167 CE2 PHE 15 7.925 6.956 -0.871 1.00 0.00 C ATOM 168 CZ PHE 15 8.206 5.581 -1.072 1.00 0.00 C ATOM 169 C PHE 15 4.286 7.623 3.970 1.00 0.00 C ATOM 170 O PHE 15 3.684 6.916 4.781 1.00 0.00 O ATOM 171 N LYS 16 3.980 8.912 3.725 1.00 0.00 N ATOM 173 CA LYS 16 2.910 9.729 4.371 1.00 0.00 C ATOM 174 CB LYS 16 1.591 9.734 3.543 1.00 0.00 C ATOM 175 CG LYS 16 0.943 8.371 3.219 1.00 0.00 C ATOM 176 CD LYS 16 -0.346 8.545 2.423 1.00 0.00 C ATOM 177 CE LYS 16 -1.013 7.207 2.109 1.00 0.00 C ATOM 178 NZ LYS 16 -0.248 6.370 1.137 1.00 0.00 N ATOM 182 C LYS 16 2.626 9.579 5.889 1.00 0.00 C ATOM 183 O LYS 16 2.749 10.557 6.637 1.00 0.00 O ATOM 184 N ASN 17 2.252 8.362 6.316 1.00 0.00 N ATOM 186 CA ASN 17 1.943 8.029 7.719 1.00 0.00 C ATOM 187 CB ASN 17 0.795 7.002 7.769 1.00 0.00 C ATOM 188 CG ASN 17 -0.010 7.062 9.070 1.00 0.00 C ATOM 189 OD1 ASN 17 -1.009 7.778 9.163 1.00 0.00 O ATOM 190 ND2 ASN 17 0.418 6.294 10.068 1.00 0.00 N ATOM 193 C ASN 17 3.198 7.474 8.429 1.00 0.00 C ATOM 194 O ASN 17 4.094 6.933 7.770 1.00 0.00 O ATOM 195 N CYS 18 3.237 7.616 9.767 1.00 0.00 N ATOM 197 CA CYS 18 4.330 7.175 10.678 1.00 0.00 C ATOM 198 CB CYS 18 4.438 5.635 10.741 1.00 0.00 C ATOM 199 SG CYS 18 5.548 4.982 12.020 1.00 0.00 S ATOM 200 C CYS 18 5.713 7.808 10.402 1.00 0.00 C ATOM 201 O CYS 18 6.162 7.854 9.249 1.00 0.00 O ATOM 202 N GLU 19 6.358 8.296 11.472 1.00 0.00 N ATOM 204 CA GLU 19 7.685 8.941 11.419 1.00 0.00 C ATOM 205 CB GLU 19 7.648 10.315 12.107 1.00 0.00 C ATOM 206 CG GLU 19 6.825 11.373 11.378 1.00 0.00 C ATOM 207 CD GLU 19 6.805 12.706 12.104 1.00 0.00 C ATOM 208 OE1 GLU 19 7.687 13.547 11.831 1.00 0.00 O ATOM 209 OE2 GLU 19 5.905 12.913 12.944 1.00 0.00 O ATOM 210 C GLU 19 8.766 8.063 12.069 1.00 0.00 C ATOM 211 O GLU 19 8.458 7.260 12.958 1.00 0.00 O ATOM 212 N VAL 20 10.018 8.225 11.612 1.00 0.00 N ATOM 214 CA VAL 20 11.192 7.477 12.108 1.00 0.00 C ATOM 215 CB VAL 20 12.094 6.963 10.892 1.00 0.00 C ATOM 216 CG1 VAL 20 12.725 8.126 10.098 1.00 0.00 C ATOM 217 CG2 VAL 20 13.143 5.939 11.354 1.00 0.00 C ATOM 218 C VAL 20 11.983 8.306 13.159 1.00 0.00 C ATOM 219 O VAL 20 12.034 9.538 13.063 1.00 0.00 O ATOM 220 N ARG 21 12.582 7.610 14.137 1.00 0.00 N ATOM 222 CA ARG 21 13.369 8.220 15.227 1.00 0.00 C ATOM 223 CB ARG 21 12.932 7.658 16.589 1.00 0.00 C ATOM 224 CG ARG 21 11.539 8.083 17.039 1.00 0.00 C ATOM 225 CD ARG 21 11.186 7.481 18.390 1.00 0.00 C ATOM 226 NE ARG 21 9.855 7.889 18.845 1.00 0.00 N ATOM 228 CZ ARG 21 9.277 7.496 19.981 1.00 0.00 C ATOM 229 NH1 ARG 21 8.063 7.935 20.283 1.00 0.00 N ATOM 232 NH2 ARG 21 9.896 6.669 20.819 1.00 0.00 N ATOM 235 C ARG 21 14.885 8.025 15.050 1.00 0.00 C ATOM 236 O ARG 21 15.676 8.851 15.526 1.00 0.00 O ATOM 237 N CYS 22 15.269 6.948 14.349 1.00 0.00 N ATOM 239 CA CYS 22 16.677 6.593 14.085 1.00 0.00 C ATOM 240 CB CYS 22 16.857 5.073 14.147 1.00 0.00 C ATOM 241 SG CYS 22 16.427 4.334 15.740 1.00 0.00 S ATOM 242 C CYS 22 17.193 7.121 12.736 1.00 0.00 C ATOM 243 O CYS 22 18.369 7.485 12.624 1.00 0.00 O ATOM 244 N ASP 23 16.292 7.184 11.737 1.00 0.00 N ATOM 246 CA ASP 23 16.535 7.652 10.344 1.00 0.00 C ATOM 247 CB ASP 23 16.879 9.159 10.285 1.00 0.00 C ATOM 248 CG ASP 23 15.731 10.049 10.749 1.00 0.00 C ATOM 249 OD1 ASP 23 15.656 10.351 11.960 1.00 0.00 O ATOM 250 OD2 ASP 23 14.912 10.463 9.898 1.00 0.00 O ATOM 251 C ASP 23 17.545 6.844 9.503 1.00 0.00 C ATOM 252 O ASP 23 17.242 6.488 8.357 1.00 0.00 O ATOM 253 N GLU 24 18.725 6.566 10.078 1.00 1.61 N ATOM 255 CA GLU 24 19.806 5.806 9.420 1.00 1.61 C ATOM 256 CB GLU 24 21.141 6.560 9.518 1.00 1.61 C ATOM 257 CG GLU 24 21.214 7.839 8.687 1.00 1.61 C ATOM 258 CD GLU 24 22.552 8.544 8.812 1.00 1.61 C ATOM 259 OE1 GLU 24 23.463 8.242 8.013 1.00 1.61 O ATOM 260 OE2 GLU 24 22.691 9.405 9.707 1.00 1.61 O ATOM 261 C GLU 24 19.961 4.400 10.022 1.00 1.61 C ATOM 262 O GLU 24 19.734 4.212 11.224 1.00 1.61 O ATOM 263 N SER 25 20.338 3.433 9.174 1.00 1.85 N ATOM 265 CA SER 25 20.541 2.023 9.558 1.00 1.85 C ATOM 266 CB SER 25 19.761 1.095 8.617 1.00 1.85 C ATOM 267 OG SER 25 18.372 1.375 8.654 1.00 1.85 O ATOM 269 C SER 25 22.028 1.641 9.545 1.00 1.85 C ATOM 270 O SER 25 22.463 0.812 10.354 1.00 1.85 O ATOM 271 N ASN 26 22.795 2.271 8.636 1.00 1.88 N ATOM 273 CA ASN 26 24.258 2.079 8.418 1.00 1.88 C ATOM 274 CB ASN 26 25.098 2.660 9.578 1.00 1.88 C ATOM 275 CG ASN 26 24.964 4.173 9.710 1.00 1.88 C ATOM 276 OD1 ASN 26 25.732 4.932 9.116 1.00 1.88 O ATOM 277 ND2 ASN 26 23.994 4.615 10.507 1.00 1.88 N ATOM 280 C ASN 26 24.725 0.646 8.091 1.00 1.88 C ATOM 281 O ASN 26 24.287 -0.315 8.736 1.00 1.88 O ATOM 282 N HIS 27 25.625 0.533 7.098 1.00 1.93 N ATOM 284 CA HIS 27 26.234 -0.726 6.583 1.00 1.93 C ATOM 285 CG HIS 27 28.449 -0.474 7.850 1.00 1.93 C ATOM 286 CD2 HIS 27 28.860 0.166 8.971 1.00 1.93 C ATOM 287 ND1 HIS 27 29.405 -0.212 6.890 1.00 1.93 N ATOM 289 CE1 HIS 27 30.351 0.552 7.407 1.00 1.93 C ATOM 290 NE2 HIS 27 30.044 0.796 8.668 1.00 1.93 N ATOM 292 C HIS 27 25.266 -1.812 6.067 1.00 1.93 C ATOM 293 O HIS 27 25.339 -2.188 4.890 1.00 1.93 O ATOM 294 CB HIS 27 27.246 -1.335 7.587 1.00 1.93 C ATOM 295 N CYS 28 24.366 -2.292 6.946 1.00 2.16 N ATOM 297 CA CYS 28 23.337 -3.337 6.685 1.00 2.16 C ATOM 298 CB CYS 28 22.197 -2.809 5.792 1.00 2.16 C ATOM 299 SG CYS 28 21.300 -1.399 6.479 1.00 2.16 S ATOM 300 C CYS 28 23.841 -4.696 6.156 1.00 2.16 C ATOM 301 O CYS 28 24.679 -4.742 5.245 1.00 2.16 O ATOM 302 N VAL 29 23.323 -5.785 6.745 1.00 2.29 N ATOM 304 CA VAL 29 23.674 -7.174 6.383 1.00 2.29 C ATOM 305 CB VAL 29 24.009 -8.040 7.687 1.00 2.29 C ATOM 306 CG1 VAL 29 22.784 -8.207 8.609 1.00 2.29 C ATOM 307 CG2 VAL 29 24.651 -9.392 7.326 1.00 2.29 C ATOM 308 C VAL 29 22.577 -7.809 5.490 1.00 2.29 C ATOM 309 O VAL 29 21.387 -7.525 5.675 1.00 2.29 O ATOM 310 N GLU 30 23.003 -8.663 4.542 1.00 2.30 N ATOM 312 CA GLU 30 22.155 -9.398 3.560 1.00 2.30 C ATOM 313 CB GLU 30 21.324 -10.514 4.230 1.00 2.30 C ATOM 314 CG GLU 30 22.146 -11.676 4.783 1.00 2.30 C ATOM 315 CD GLU 30 21.286 -12.742 5.436 1.00 2.30 C ATOM 316 OE1 GLU 30 21.038 -12.643 6.656 1.00 2.30 O ATOM 317 OE2 GLU 30 20.861 -13.682 4.730 1.00 2.30 O ATOM 318 C GLU 30 21.251 -8.544 2.647 1.00 2.30 C ATOM 319 O GLU 30 20.639 -7.572 3.106 1.00 2.30 O ATOM 320 N VAL 31 21.182 -8.926 1.363 1.00 2.23 N ATOM 322 CA VAL 31 20.374 -8.240 0.332 1.00 2.23 C ATOM 323 CB VAL 31 21.165 -8.059 -1.026 1.00 2.23 C ATOM 324 CG1 VAL 31 22.177 -6.932 -0.887 1.00 2.23 C ATOM 325 CG2 VAL 31 21.887 -9.359 -1.453 1.00 2.23 C ATOM 326 C VAL 31 18.994 -8.892 0.080 1.00 2.23 C ATOM 327 O VAL 31 18.869 -10.122 0.145 1.00 2.23 O ATOM 328 N ARG 32 17.979 -8.053 -0.182 1.00 1.93 N ATOM 330 CA ARG 32 16.595 -8.486 -0.448 1.00 1.93 C ATOM 331 CB ARG 32 15.612 -7.688 0.428 1.00 1.93 C ATOM 332 CG ARG 32 14.420 -8.492 0.977 1.00 1.93 C ATOM 333 CD ARG 32 13.481 -7.632 1.820 1.00 1.93 C ATOM 334 NE ARG 32 14.075 -7.219 3.096 1.00 1.93 N ATOM 336 CZ ARG 32 13.465 -6.481 4.024 1.00 1.93 C ATOM 337 NH1 ARG 32 14.111 -6.172 5.141 1.00 1.93 N ATOM 340 NH2 ARG 32 12.220 -6.049 3.852 1.00 1.93 N ATOM 343 C ARG 32 16.259 -8.293 -1.941 1.00 1.93 C ATOM 344 O ARG 32 16.766 -7.359 -2.575 1.00 1.93 O ATOM 345 N CYS 33 15.416 -9.188 -2.479 1.00 1.70 N ATOM 347 CA CYS 33 14.978 -9.171 -3.887 1.00 1.70 C ATOM 348 CB CYS 33 15.190 -10.549 -4.530 1.00 1.70 C ATOM 349 SG CYS 33 14.407 -11.928 -3.654 1.00 1.70 S ATOM 350 C CYS 33 13.509 -8.746 -4.031 1.00 1.70 C ATOM 351 O CYS 33 13.148 -8.089 -5.016 1.00 1.70 O ATOM 352 N SER 34 12.684 -9.110 -3.032 1.00 1.50 N ATOM 354 CA SER 34 11.224 -8.830 -2.930 1.00 1.50 C ATOM 355 CB SER 34 10.944 -7.358 -2.557 1.00 1.50 C ATOM 356 OG SER 34 11.488 -6.464 -3.512 1.00 1.50 O ATOM 358 C SER 34 10.334 -9.261 -4.115 1.00 1.50 C ATOM 359 O SER 34 10.685 -9.021 -5.277 1.00 1.50 O ATOM 360 N ASP 35 9.182 -9.874 -3.789 1.00 1.21 N ATOM 362 CA ASP 35 8.139 -10.398 -4.718 1.00 1.21 C ATOM 363 CB ASP 35 6.934 -9.421 -4.841 1.00 1.21 C ATOM 364 CG ASP 35 7.337 -8.001 -5.259 1.00 1.21 C ATOM 365 OD1 ASP 35 7.378 -7.722 -6.477 1.00 1.21 O ATOM 366 OD2 ASP 35 7.600 -7.165 -4.366 1.00 1.21 O ATOM 367 C ASP 35 8.541 -10.976 -6.100 1.00 1.21 C ATOM 368 O ASP 35 8.389 -12.183 -6.328 1.00 1.21 O ATOM 369 N THR 36 9.044 -10.110 -6.995 1.00 1.27 N ATOM 371 CA THR 36 9.479 -10.481 -8.357 1.00 1.27 C ATOM 372 CB THR 36 8.892 -9.495 -9.430 1.00 1.27 C ATOM 373 OG1 THR 36 7.666 -8.934 -8.941 1.00 1.27 O ATOM 375 CG2 THR 36 8.593 -10.228 -10.746 1.00 1.27 C ATOM 376 C THR 36 11.024 -10.481 -8.429 1.00 1.27 C ATOM 377 O THR 36 11.677 -9.645 -7.786 1.00 1.27 O ATOM 378 N LYS 37 11.584 -11.439 -9.181 1.00 1.62 N ATOM 380 CA LYS 37 13.040 -11.594 -9.367 1.00 1.62 C ATOM 381 CB LYS 37 13.527 -12.995 -8.907 1.00 1.62 C ATOM 382 CG LYS 37 12.679 -14.209 -9.337 1.00 1.62 C ATOM 383 CD LYS 37 13.210 -15.496 -8.727 1.00 1.62 C ATOM 384 CE LYS 37 12.355 -16.689 -9.123 1.00 1.62 C ATOM 385 NZ LYS 37 12.869 -17.958 -8.538 1.00 1.62 N ATOM 389 C LYS 37 13.529 -11.244 -10.792 1.00 1.62 C ATOM 390 O LYS 37 14.196 -10.219 -10.973 1.00 1.62 O ATOM 391 N TYR 38 13.198 -12.091 -11.780 1.00 1.97 N ATOM 393 CA TYR 38 13.579 -11.896 -13.191 1.00 1.97 C ATOM 394 CB TYR 38 14.660 -12.929 -13.643 1.00 1.97 C ATOM 395 CG TYR 38 14.403 -14.418 -13.351 1.00 1.97 C ATOM 396 CD1 TYR 38 13.685 -15.230 -14.264 1.00 1.97 C ATOM 397 CE1 TYR 38 13.482 -16.615 -14.019 1.00 1.97 C ATOM 398 CD2 TYR 38 14.916 -15.032 -12.184 1.00 1.97 C ATOM 399 CE2 TYR 38 14.720 -16.420 -11.932 1.00 1.97 C ATOM 400 CZ TYR 38 14.004 -17.198 -12.854 1.00 1.97 C ATOM 401 OH TYR 38 13.811 -18.540 -12.612 1.00 1.97 O ATOM 403 C TYR 38 12.371 -11.907 -14.146 1.00 1.97 C ATOM 404 O TYR 38 12.205 -10.973 -14.935 1.00 1.97 O ATOM 405 N THR 39 11.535 -12.958 -14.036 1.00 2.03 N ATOM 407 CA THR 39 10.301 -13.223 -14.832 1.00 2.03 C ATOM 408 CB THR 39 9.024 -12.533 -14.228 1.00 2.03 C ATOM 409 OG1 THR 39 9.283 -11.139 -14.015 1.00 2.03 O ATOM 411 CG2 THR 39 8.629 -13.188 -12.910 1.00 2.03 C ATOM 412 C THR 39 10.339 -13.015 -16.365 1.00 2.03 C ATOM 413 O THR 39 10.138 -13.979 -17.114 1.00 2.03 O ATOM 414 N LEU 40 10.621 -11.773 -16.809 1.00 2.06 N ATOM 416 CA LEU 40 10.715 -11.320 -18.226 1.00 2.06 C ATOM 417 CB LEU 40 12.170 -11.433 -18.779 1.00 2.06 C ATOM 418 CG LEU 40 13.100 -12.671 -18.779 1.00 2.06 C ATOM 419 CD1 LEU 40 14.075 -12.554 -19.941 1.00 2.06 C ATOM 420 CD2 LEU 40 13.859 -12.844 -17.454 1.00 2.06 C ATOM 421 C LEU 40 9.679 -11.827 -19.261 1.00 2.06 C ATOM 422 O LEU 40 9.509 -13.041 -19.435 1.00 2.06 O ATOM 423 N CYS 41 9.007 -10.880 -19.930 1.00 1.92 N ATOM 425 CA CYS 41 7.983 -11.157 -20.955 1.00 1.92 C ATOM 426 CB CYS 41 6.704 -10.358 -20.656 1.00 1.92 C ATOM 427 SG CYS 41 5.279 -10.758 -21.705 1.00 1.92 S ATOM 428 C CYS 41 8.504 -10.816 -22.354 1.00 1.92 C ATOM 429 O CYS 41 8.099 -11.504 -23.316 1.00 1.92 O ATOM 430 OXT CYS 41 9.316 -9.874 -22.467 1.00 1.92 O TER END