####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS407_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 1 - 20 4.64 15.75 LCS_AVERAGE: 40.10 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.63 16.13 LCS_AVERAGE: 26.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.73 16.21 LCS_AVERAGE: 20.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 20 0 3 3 4 9 12 15 17 18 18 19 19 19 19 20 21 21 22 22 22 LCS_GDT Q 2 Q 2 14 17 20 9 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT E 3 E 3 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT T 4 T 4 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT R 5 R 5 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT K 6 K 6 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT K 7 K 7 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT C 8 C 8 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT T 9 T 9 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT E 10 E 10 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT M 11 M 11 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT K 12 K 12 14 17 20 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT K 13 K 13 14 17 20 7 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT K 14 K 14 14 17 20 6 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT F 15 F 15 14 17 20 3 11 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT K 16 K 16 10 17 20 3 4 6 10 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT N 17 N 17 5 17 20 3 7 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT C 18 C 18 5 6 20 3 4 5 5 6 7 9 12 16 18 18 19 19 20 20 21 21 22 22 22 LCS_GDT E 19 E 19 5 6 20 3 4 5 5 6 7 7 9 11 13 14 18 19 20 20 21 21 22 22 22 LCS_GDT V 20 V 20 5 6 20 3 4 5 5 6 6 6 7 8 8 9 11 14 15 16 17 18 19 20 21 LCS_GDT R 21 R 21 5 6 11 3 4 5 5 6 6 6 7 8 8 9 11 14 15 16 17 18 19 20 20 LCS_GDT C 22 C 22 4 6 11 3 3 4 4 6 6 6 7 8 8 9 9 11 13 15 16 18 19 19 20 LCS_GDT D 23 D 23 4 5 13 3 3 4 4 5 6 6 7 8 8 9 13 14 15 16 17 18 19 20 21 LCS_GDT E 24 E 24 4 5 14 3 3 4 4 5 6 6 8 10 11 13 13 14 15 17 18 19 19 20 21 LCS_GDT S 25 S 25 4 8 14 3 3 4 6 7 8 9 11 11 11 13 13 14 15 17 18 19 19 20 21 LCS_GDT N 26 N 26 6 8 14 3 5 6 6 7 8 10 11 11 11 13 13 14 15 17 18 19 19 21 21 LCS_GDT H 27 H 27 6 8 14 5 5 6 6 7 9 10 11 11 11 13 13 14 15 17 18 19 19 20 21 LCS_GDT C 28 C 28 6 8 14 5 5 6 6 7 9 10 11 11 13 13 15 16 20 20 21 21 22 22 22 LCS_GDT V 29 V 29 6 8 14 5 5 6 6 7 9 10 11 11 13 14 15 19 20 20 21 21 22 22 22 LCS_GDT E 30 E 30 6 8 14 5 5 6 12 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 LCS_GDT V 31 V 31 6 8 14 5 5 6 6 9 11 13 14 17 17 19 19 19 19 20 20 21 22 22 22 LCS_GDT R 32 R 32 5 8 14 4 4 5 5 7 9 10 13 14 15 15 15 18 18 20 20 20 20 21 22 LCS_GDT C 33 C 33 5 8 14 4 4 5 6 7 9 10 11 11 11 13 13 13 15 17 18 19 19 20 20 LCS_GDT S 34 S 34 5 7 14 3 4 5 5 7 9 10 11 11 11 13 13 13 15 17 18 19 19 20 20 LCS_GDT D 35 D 35 4 6 14 3 4 5 5 7 9 10 11 11 11 13 13 13 15 17 18 19 19 20 20 LCS_GDT T 36 T 36 6 6 14 3 6 6 6 7 9 10 10 11 11 13 13 13 15 17 18 19 19 20 20 LCS_GDT K 37 K 37 6 6 14 3 6 6 6 6 6 6 7 9 10 11 12 13 15 17 18 19 19 20 20 LCS_GDT Y 38 Y 38 6 6 13 3 6 6 6 6 6 6 8 9 9 9 9 10 12 12 14 15 15 15 15 LCS_GDT T 39 T 39 6 6 10 3 6 6 6 6 6 6 8 9 9 9 9 10 10 10 10 10 11 11 12 LCS_GDT L 40 L 40 6 6 10 3 6 6 6 6 6 6 8 9 9 9 9 10 10 10 10 10 11 11 11 LCS_GDT C 41 C 41 6 6 10 3 6 6 6 6 6 6 8 9 9 9 9 10 10 10 10 10 11 11 11 LCS_AVERAGE LCS_A: 29.05 ( 20.29 26.77 40.10 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 15 15 16 17 17 17 18 18 19 19 19 20 20 21 21 22 22 22 GDT PERCENT_AT 24.39 29.27 36.59 36.59 39.02 41.46 41.46 41.46 43.90 43.90 46.34 46.34 46.34 48.78 48.78 51.22 51.22 53.66 53.66 53.66 GDT RMS_LOCAL 0.33 0.47 0.79 0.79 1.09 1.48 1.48 1.48 1.89 1.89 2.44 2.44 2.44 3.54 3.28 3.75 3.62 4.11 4.11 4.11 GDT RMS_ALL_AT 15.82 15.90 16.19 16.19 16.20 15.58 15.58 15.58 15.52 15.52 15.39 15.39 15.39 15.50 15.48 15.40 15.28 15.26 15.26 15.26 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 5.920 0 0.645 0.939 7.629 14.091 9.394 6.159 LGA Q 2 Q 2 1.296 0 0.641 1.193 7.569 60.000 33.737 4.575 LGA E 3 E 3 0.595 0 0.049 1.217 6.184 81.818 51.111 3.205 LGA T 4 T 4 0.628 0 0.036 1.305 3.326 81.818 64.935 3.326 LGA R 5 R 5 0.695 0 0.038 1.338 7.404 81.818 48.760 7.404 LGA K 6 K 6 0.334 0 0.030 1.360 7.324 100.000 59.192 7.324 LGA K 7 K 7 0.515 0 0.024 0.649 2.654 86.364 63.232 2.077 LGA C 8 C 8 0.710 0 0.041 0.049 1.377 81.818 79.091 1.377 LGA T 9 T 9 0.627 0 0.024 0.149 1.532 81.818 77.403 0.941 LGA E 10 E 10 0.501 0 0.018 0.757 4.306 90.909 58.182 4.306 LGA M 11 M 11 0.372 0 0.052 1.003 3.327 100.000 79.091 3.327 LGA K 12 K 12 0.933 0 0.049 0.937 6.276 77.727 52.323 6.276 LGA K 13 K 13 1.710 0 0.040 0.277 4.642 54.545 32.525 4.642 LGA K 14 K 14 1.920 0 0.027 0.115 3.575 51.364 35.354 3.164 LGA F 15 F 15 1.717 0 0.413 1.107 5.722 48.636 37.025 4.884 LGA K 16 K 16 3.048 0 0.671 1.072 7.582 21.364 11.313 7.582 LGA N 17 N 17 1.254 0 0.069 0.876 4.917 38.182 26.364 3.451 LGA C 18 C 18 7.711 0 0.661 0.673 10.788 0.000 0.000 7.569 LGA E 19 E 19 10.722 0 0.173 1.155 15.046 0.000 0.000 11.468 LGA V 20 V 20 16.676 0 0.116 0.963 18.565 0.000 0.000 18.031 LGA R 21 R 21 22.551 0 0.146 1.041 26.096 0.000 0.000 26.096 LGA C 22 C 22 26.651 0 0.538 1.094 28.355 0.000 0.000 27.896 LGA D 23 D 23 26.319 0 0.061 1.022 27.177 0.000 0.000 25.091 LGA E 24 E 24 26.503 0 0.635 0.964 27.877 0.000 0.000 25.724 LGA S 25 S 25 26.255 0 0.606 0.580 27.973 0.000 0.000 27.973 LGA N 26 N 26 21.395 0 0.662 1.278 22.911 0.000 0.000 16.219 LGA H 27 H 27 21.211 0 0.366 1.073 25.881 0.000 0.000 25.881 LGA C 28 C 28 13.783 0 0.098 0.756 16.395 0.000 0.000 14.355 LGA V 29 V 29 9.788 0 0.119 0.992 13.085 0.000 0.000 12.754 LGA E 30 E 30 3.347 0 0.026 0.801 7.423 5.909 6.667 5.208 LGA V 31 V 31 7.833 0 0.158 1.136 11.169 0.000 0.000 11.169 LGA R 32 R 32 12.248 0 0.251 1.293 15.892 0.000 0.000 10.658 LGA C 33 C 33 19.797 0 0.504 1.100 21.495 0.000 0.000 20.918 LGA S 34 S 34 24.137 0 0.244 0.241 26.099 0.000 0.000 25.552 LGA D 35 D 35 26.987 0 0.111 1.091 29.511 0.000 0.000 28.118 LGA T 36 T 36 24.788 0 0.634 0.506 25.628 0.000 0.000 25.628 LGA K 37 K 37 20.795 0 0.634 1.366 21.865 0.000 0.000 10.555 LGA Y 38 Y 38 21.620 0 0.173 0.160 32.028 0.000 0.000 32.028 LGA T 39 T 39 20.089 0 0.155 0.973 21.343 0.000 0.000 17.347 LGA L 40 L 40 24.718 0 0.619 1.057 31.528 0.000 0.000 30.021 LGA C 41 C 41 22.134 0 0.243 0.849 22.730 0.000 0.000 21.561 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 13.657 13.654 14.070 28.248 20.139 7.007 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.48 39.634 37.512 1.078 LGA_LOCAL RMSD: 1.477 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.582 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 13.657 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.464125 * X + 0.547106 * Y + 0.696608 * Z + -3.252982 Y_new = 0.623956 * X + -0.760142 * Y + 0.181285 * Z + 1.626112 Z_new = 0.628703 * X + 0.350513 * Y + -0.694171 * Z + -2.422572 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.931247 -0.679884 2.674003 [DEG: 53.3565 -38.9545 153.2091 ] ZXZ: 1.825389 2.338064 1.062199 [DEG: 104.5871 133.9612 60.8595 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS407_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS407_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.48 37.512 13.66 REMARK ---------------------------------------------------------- MOLECULE T0955TS407_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 CB SER 1 -1.064 -15.557 5.691 1.00 0.00 C ATOM 2 OG SER 1 -1.158 -16.879 5.184 1.00 0.00 O ATOM 4 C SER 1 0.410 -14.695 3.838 1.00 0.00 C ATOM 5 O SER 1 0.911 -15.574 3.126 1.00 0.00 O ATOM 8 N SER 1 0.428 -13.614 6.072 1.00 0.00 N ATOM 10 CA SER 1 0.288 -14.913 5.354 1.00 0.00 C ATOM 11 N GLN 2 -0.045 -13.524 3.370 1.00 0.00 N ATOM 13 CA GLN 2 -0.014 -13.133 1.946 1.00 0.00 C ATOM 14 CB GLN 2 -1.395 -12.637 1.487 1.00 0.00 C ATOM 15 CG GLN 2 -2.469 -13.718 1.414 1.00 0.00 C ATOM 16 CD GLN 2 -3.809 -13.179 0.951 1.00 0.00 C ATOM 17 OE1 GLN 2 -4.635 -12.759 1.761 1.00 0.00 O ATOM 18 NE2 GLN 2 -4.032 -13.188 -0.359 1.00 0.00 N ATOM 21 C GLN 2 1.042 -12.050 1.674 1.00 0.00 C ATOM 22 O GLN 2 1.315 -11.216 2.547 1.00 0.00 O ATOM 23 N GLU 3 1.625 -12.081 0.466 1.00 0.00 N ATOM 25 CA GLU 3 2.665 -11.134 0.003 1.00 0.00 C ATOM 26 CB GLU 3 3.346 -11.657 -1.270 1.00 0.00 C ATOM 27 CG GLU 3 4.217 -12.894 -1.068 1.00 0.00 C ATOM 28 CD GLU 3 4.870 -13.367 -2.353 1.00 0.00 C ATOM 29 OE1 GLU 3 4.261 -14.195 -3.062 1.00 0.00 O ATOM 30 OE2 GLU 3 5.996 -12.914 -2.652 1.00 0.00 O ATOM 31 C GLU 3 2.154 -9.700 -0.238 1.00 0.00 C ATOM 32 O GLU 3 2.861 -8.733 0.070 1.00 0.00 O ATOM 33 N THR 4 0.922 -9.585 -0.758 1.00 0.00 N ATOM 35 CA THR 4 0.254 -8.300 -1.063 1.00 0.00 C ATOM 36 CB THR 4 -1.039 -8.521 -1.916 1.00 0.00 C ATOM 37 OG1 THR 4 -0.926 -9.751 -2.644 1.00 0.00 O ATOM 39 CG2 THR 4 -1.233 -7.382 -2.928 1.00 0.00 C ATOM 40 C THR 4 -0.085 -7.520 0.232 1.00 0.00 C ATOM 41 O THR 4 0.047 -6.289 0.268 1.00 0.00 O ATOM 42 N ARG 5 -0.476 -8.258 1.284 1.00 0.00 N ATOM 44 CA ARG 5 -0.832 -7.708 2.608 1.00 0.00 C ATOM 45 CB ARG 5 -1.504 -8.794 3.467 1.00 0.00 C ATOM 46 CG ARG 5 -2.661 -8.305 4.354 1.00 0.00 C ATOM 47 CD ARG 5 -3.257 -9.431 5.198 1.00 0.00 C ATOM 48 NE ARG 5 -2.349 -9.892 6.252 1.00 0.00 N ATOM 50 CZ ARG 5 -2.591 -10.902 7.089 1.00 0.00 C ATOM 51 NH1 ARG 5 -3.727 -11.592 7.024 1.00 0.00 N ATOM 54 NH2 ARG 5 -1.688 -11.224 8.004 1.00 0.00 N ATOM 57 C ARG 5 0.420 -7.147 3.320 1.00 0.00 C ATOM 58 O ARG 5 0.365 -6.057 3.901 1.00 0.00 O ATOM 59 N LYS 6 1.541 -7.878 3.214 1.00 0.00 N ATOM 61 CA LYS 6 2.842 -7.510 3.813 1.00 0.00 C ATOM 62 CB LYS 6 3.828 -8.685 3.745 1.00 0.00 C ATOM 63 CG LYS 6 3.479 -9.867 4.643 1.00 0.00 C ATOM 64 CD LYS 6 4.516 -10.978 4.523 1.00 0.00 C ATOM 65 CE LYS 6 4.188 -12.172 5.416 1.00 0.00 C ATOM 66 NZ LYS 6 2.981 -12.934 4.974 1.00 0.00 N ATOM 70 C LYS 6 3.458 -6.271 3.140 1.00 0.00 C ATOM 71 O LYS 6 3.967 -5.380 3.830 1.00 0.00 O ATOM 72 N LYS 7 3.363 -6.214 1.801 1.00 0.00 N ATOM 74 CA LYS 7 3.874 -5.100 0.973 1.00 0.00 C ATOM 75 CB LYS 7 3.864 -5.473 -0.515 1.00 0.00 C ATOM 76 CG LYS 7 4.938 -6.474 -0.925 1.00 0.00 C ATOM 77 CD LYS 7 4.862 -6.789 -2.410 1.00 0.00 C ATOM 78 CE LYS 7 5.936 -7.785 -2.819 1.00 0.00 C ATOM 79 NZ LYS 7 5.872 -8.105 -4.271 1.00 0.00 N ATOM 83 C LYS 7 3.063 -3.812 1.197 1.00 0.00 C ATOM 84 O LYS 7 3.632 -2.716 1.212 1.00 0.00 O ATOM 85 N CYS 8 1.745 -3.972 1.396 1.00 0.00 N ATOM 87 CA CYS 8 0.791 -2.870 1.642 1.00 0.00 C ATOM 88 CB CYS 8 -0.651 -3.383 1.530 1.00 0.00 C ATOM 89 SG CYS 8 -1.934 -2.107 1.565 1.00 0.00 S ATOM 90 C CYS 8 1.022 -2.209 3.018 1.00 0.00 C ATOM 91 O CYS 8 1.008 -0.975 3.122 1.00 0.00 O ATOM 92 N THR 9 1.258 -3.039 4.048 1.00 0.00 N ATOM 94 CA THR 9 1.517 -2.593 5.434 1.00 0.00 C ATOM 95 CB THR 9 1.425 -3.785 6.448 1.00 0.00 C ATOM 96 OG1 THR 9 0.360 -4.658 6.055 1.00 0.00 O ATOM 98 CG2 THR 9 1.120 -3.286 7.873 1.00 0.00 C ATOM 99 C THR 9 2.896 -1.894 5.528 1.00 0.00 C ATOM 100 O THR 9 3.029 -0.884 6.230 1.00 0.00 O ATOM 101 N GLU 10 3.889 -2.419 4.791 1.00 0.00 N ATOM 103 CA GLU 10 5.263 -1.877 4.742 1.00 0.00 C ATOM 104 CB GLU 10 6.225 -2.870 4.077 1.00 0.00 C ATOM 105 CG GLU 10 6.635 -4.041 4.962 1.00 0.00 C ATOM 106 CD GLU 10 7.591 -4.995 4.270 1.00 0.00 C ATOM 107 OE1 GLU 10 8.818 -4.788 4.372 1.00 0.00 O ATOM 108 OE2 GLU 10 7.114 -5.952 3.625 1.00 0.00 O ATOM 109 C GLU 10 5.334 -0.514 4.029 1.00 0.00 C ATOM 110 O GLU 10 6.034 0.390 4.497 1.00 0.00 O ATOM 111 N MET 11 4.581 -0.378 2.925 1.00 0.00 N ATOM 113 CA MET 11 4.502 0.860 2.118 1.00 0.00 C ATOM 114 CG MET 11 4.698 -0.097 -0.261 1.00 0.00 C ATOM 115 SD MET 11 3.857 -0.388 -1.832 1.00 0.00 S ATOM 116 CE MET 11 4.532 0.939 -2.844 1.00 0.00 C ATOM 117 C MET 11 3.781 1.993 2.866 1.00 0.00 C ATOM 118 O MET 11 4.187 3.156 2.765 1.00 0.00 O ATOM 119 CB MET 11 3.817 0.598 0.772 1.00 0.00 C ATOM 120 N LYS 12 2.718 1.639 3.606 1.00 0.00 N ATOM 122 CA LYS 12 1.914 2.579 4.416 1.00 0.00 C ATOM 123 CB LYS 12 0.580 1.945 4.829 1.00 0.00 C ATOM 124 CG LYS 12 -0.474 1.927 3.731 1.00 0.00 C ATOM 125 CD LYS 12 -1.800 1.376 4.244 1.00 0.00 C ATOM 126 CE LYS 12 -2.924 1.529 3.222 1.00 0.00 C ATOM 127 NZ LYS 12 -2.754 0.683 2.004 1.00 0.00 N ATOM 131 C LYS 12 2.663 3.097 5.658 1.00 0.00 C ATOM 132 O LYS 12 2.588 4.291 5.971 1.00 0.00 O ATOM 133 N LYS 13 3.372 2.190 6.350 1.00 0.00 N ATOM 135 CA LYS 13 4.166 2.491 7.562 1.00 0.00 C ATOM 136 CB LYS 13 4.517 1.202 8.319 1.00 0.00 C ATOM 137 CG LYS 13 3.354 0.583 9.085 1.00 0.00 C ATOM 138 CD LYS 13 3.791 -0.670 9.836 1.00 0.00 C ATOM 139 CE LYS 13 2.648 -1.293 10.635 1.00 0.00 C ATOM 140 NZ LYS 13 2.210 -0.462 11.797 1.00 0.00 N ATOM 144 C LYS 13 5.444 3.316 7.308 1.00 0.00 C ATOM 145 O LYS 13 5.717 4.266 8.048 1.00 0.00 O ATOM 146 N LYS 14 6.203 2.944 6.266 1.00 0.00 N ATOM 148 CA LYS 14 7.462 3.612 5.862 1.00 0.00 C ATOM 149 CB LYS 14 8.254 2.731 4.886 1.00 0.00 C ATOM 150 CG LYS 14 8.896 1.500 5.516 1.00 0.00 C ATOM 151 CD LYS 14 9.662 0.685 4.481 1.00 0.00 C ATOM 152 CE LYS 14 10.312 -0.556 5.089 1.00 0.00 C ATOM 153 NZ LYS 14 9.328 -1.592 5.528 1.00 0.00 N ATOM 157 C LYS 14 7.288 5.022 5.267 1.00 0.00 C ATOM 158 O LYS 14 8.118 5.905 5.516 1.00 0.00 O ATOM 159 N PHE 15 6.208 5.212 4.495 1.00 0.00 N ATOM 161 CA PHE 15 5.877 6.488 3.833 1.00 0.00 C ATOM 162 CB PHE 15 5.353 6.217 2.395 1.00 0.00 C ATOM 163 CG PHE 15 5.554 7.369 1.403 1.00 0.00 C ATOM 164 CD1 PHE 15 4.547 8.348 1.219 1.00 0.00 C ATOM 165 CD2 PHE 15 6.731 7.456 0.623 1.00 0.00 C ATOM 166 CE1 PHE 15 4.710 9.399 0.273 1.00 0.00 C ATOM 167 CE2 PHE 15 6.907 8.501 -0.328 1.00 0.00 C ATOM 168 CZ PHE 15 5.893 9.474 -0.502 1.00 0.00 C ATOM 169 C PHE 15 4.837 7.287 4.650 1.00 0.00 C ATOM 170 O PHE 15 3.911 6.697 5.224 1.00 0.00 O ATOM 171 N LYS 16 5.017 8.614 4.695 1.00 0.03 N ATOM 173 CA LYS 16 4.137 9.551 5.421 1.00 0.03 C ATOM 174 CB LYS 16 4.958 10.454 6.379 1.00 0.03 C ATOM 175 CG LYS 16 6.232 11.115 5.810 1.00 0.03 C ATOM 176 CD LYS 16 6.929 11.966 6.859 1.00 0.03 C ATOM 177 CE LYS 16 8.183 12.617 6.299 1.00 0.03 C ATOM 178 NZ LYS 16 8.876 13.453 7.319 1.00 0.03 N ATOM 182 C LYS 16 3.242 10.390 4.481 1.00 0.03 C ATOM 183 O LYS 16 3.520 10.474 3.280 1.00 0.03 O ATOM 184 N ASN 17 2.187 10.998 5.043 1.00 0.49 N ATOM 186 CA ASN 17 1.223 11.837 4.304 1.00 0.49 C ATOM 187 CB ASN 17 -0.215 11.620 4.832 1.00 0.49 C ATOM 188 CG ASN 17 -0.319 11.684 6.362 1.00 0.49 C ATOM 189 OD1 ASN 17 -0.552 12.748 6.936 1.00 0.49 O ATOM 190 ND2 ASN 17 -0.158 10.537 7.017 1.00 0.49 N ATOM 193 C ASN 17 1.578 13.338 4.272 1.00 0.49 C ATOM 194 O ASN 17 1.422 13.988 3.232 1.00 0.49 O ATOM 195 N CYS 18 2.063 13.860 5.414 1.00 0.77 N ATOM 197 CA CYS 18 2.482 15.272 5.646 1.00 0.77 C ATOM 198 CB CYS 18 3.708 15.653 4.790 1.00 0.77 C ATOM 199 SG CYS 18 5.177 14.646 5.101 1.00 0.77 S ATOM 200 C CYS 18 1.401 16.370 5.538 1.00 0.77 C ATOM 201 O CYS 18 1.477 17.382 6.246 1.00 0.77 O ATOM 202 N GLU 19 0.394 16.146 4.673 1.00 0.00 N ATOM 204 CA GLU 19 -0.752 17.056 4.396 1.00 0.00 C ATOM 205 CB GLU 19 -1.718 17.165 5.599 1.00 0.00 C ATOM 206 CG GLU 19 -2.467 15.878 5.935 1.00 0.00 C ATOM 207 CD GLU 19 -3.339 16.014 7.169 1.00 0.00 C ATOM 208 OE1 GLU 19 -4.518 16.403 7.028 1.00 0.00 O ATOM 209 OE2 GLU 19 -2.846 15.728 8.281 1.00 0.00 O ATOM 210 C GLU 19 -0.379 18.462 3.881 1.00 0.00 C ATOM 211 O GLU 19 0.415 19.172 4.517 1.00 0.00 O ATOM 212 N VAL 20 -0.933 18.830 2.715 1.00 0.00 N ATOM 214 CA VAL 20 -0.701 20.132 2.057 1.00 0.00 C ATOM 215 CB VAL 20 -0.211 19.972 0.558 1.00 0.00 C ATOM 216 CG1 VAL 20 1.252 19.556 0.535 1.00 0.00 C ATOM 217 CG2 VAL 20 -1.058 18.938 -0.219 1.00 0.00 C ATOM 218 C VAL 20 -1.911 21.089 2.137 1.00 0.00 C ATOM 219 O VAL 20 -3.060 20.642 2.034 1.00 0.00 O ATOM 220 N ARG 21 -1.622 22.390 2.327 1.00 0.36 N ATOM 222 CA ARG 21 -2.584 23.523 2.440 1.00 0.36 C ATOM 223 CB ARG 21 -2.548 24.422 1.173 1.00 0.36 C ATOM 224 CG ARG 21 -2.726 23.725 -0.192 1.00 0.36 C ATOM 225 CD ARG 21 -2.652 24.722 -1.338 1.00 0.36 C ATOM 226 NE ARG 21 -2.813 24.076 -2.642 1.00 0.36 N ATOM 228 CZ ARG 21 -2.746 24.696 -3.821 1.00 0.36 C ATOM 229 NH1 ARG 21 -2.911 23.999 -4.937 1.00 0.36 N ATOM 232 NH2 ARG 21 -2.516 26.004 -3.899 1.00 0.36 N ATOM 235 C ARG 21 -4.042 23.277 2.914 1.00 0.36 C ATOM 236 O ARG 21 -4.836 22.657 2.194 1.00 0.36 O ATOM 237 N CYS 22 -4.355 23.769 4.127 1.00 0.49 N ATOM 239 CA CYS 22 -5.669 23.682 4.826 1.00 0.49 C ATOM 240 CB CYS 22 -6.601 24.841 4.403 1.00 0.49 C ATOM 241 SG CYS 22 -8.117 25.025 5.385 1.00 0.49 S ATOM 242 C CYS 22 -6.413 22.324 4.781 1.00 0.49 C ATOM 243 O CYS 22 -6.551 21.664 5.819 1.00 0.49 O ATOM 244 N ASP 23 -6.879 21.932 3.585 1.00 0.42 N ATOM 246 CA ASP 23 -7.605 20.671 3.344 1.00 0.42 C ATOM 247 CB ASP 23 -8.927 20.934 2.576 1.00 0.42 C ATOM 248 CG ASP 23 -8.754 21.853 1.357 1.00 0.42 C ATOM 249 OD1 ASP 23 -8.499 21.336 0.248 1.00 0.42 O ATOM 250 OD2 ASP 23 -8.886 23.086 1.515 1.00 0.42 O ATOM 251 C ASP 23 -6.727 19.629 2.616 1.00 0.42 C ATOM 252 O ASP 23 -5.683 19.990 2.059 1.00 0.42 O ATOM 253 N GLU 24 -7.159 18.359 2.629 1.00 1.27 N ATOM 255 CA GLU 24 -6.443 17.239 1.988 1.00 1.27 C ATOM 256 CB GLU 24 -6.635 15.943 2.790 1.00 1.27 C ATOM 257 CG GLU 24 -5.941 15.923 4.150 1.00 1.27 C ATOM 258 CD GLU 24 -6.159 14.622 4.900 1.00 1.27 C ATOM 259 OE1 GLU 24 -7.144 14.529 5.661 1.00 1.27 O ATOM 260 OE2 GLU 24 -5.340 13.692 4.730 1.00 1.27 O ATOM 261 C GLU 24 -6.855 17.017 0.519 1.00 1.27 C ATOM 262 O GLU 24 -8.053 16.990 0.203 1.00 1.27 O ATOM 263 N SER 25 -5.850 16.898 -0.359 1.00 1.41 N ATOM 265 CA SER 25 -6.031 16.680 -1.806 1.00 1.41 C ATOM 266 CB SER 25 -5.304 17.769 -2.608 1.00 1.41 C ATOM 267 OG SER 25 -5.802 19.058 -2.291 1.00 1.41 O ATOM 269 C SER 25 -5.514 15.294 -2.221 1.00 1.41 C ATOM 270 O SER 25 -4.511 14.817 -1.674 1.00 1.41 O ATOM 271 N ASN 26 -6.215 14.659 -3.172 1.00 1.42 N ATOM 273 CA ASN 26 -5.872 13.324 -3.698 1.00 1.42 C ATOM 274 CB ASN 26 -7.076 12.366 -3.549 1.00 1.42 C ATOM 275 CG ASN 26 -6.664 10.896 -3.439 1.00 1.42 C ATOM 276 OD1 ASN 26 -6.442 10.382 -2.341 1.00 1.42 O ATOM 277 ND2 ASN 26 -6.577 10.217 -4.579 1.00 1.42 N ATOM 280 C ASN 26 -5.439 13.436 -5.175 1.00 1.42 C ATOM 281 O ASN 26 -6.116 14.098 -5.976 1.00 1.42 O ATOM 282 N HIS 27 -4.297 12.815 -5.503 1.00 1.45 N ATOM 284 CA HIS 27 -3.722 12.803 -6.862 1.00 1.45 C ATOM 285 CG HIS 27 -1.402 13.084 -5.775 1.00 1.45 C ATOM 286 CD2 HIS 27 -0.911 13.790 -4.728 1.00 1.45 C ATOM 287 ND1 HIS 27 -0.859 11.821 -5.670 1.00 1.45 N ATOM 289 CE1 HIS 27 -0.076 11.764 -4.607 1.00 1.45 C ATOM 290 NE2 HIS 27 -0.090 12.946 -4.018 1.00 1.45 N ATOM 292 C HIS 27 -3.660 11.389 -7.470 1.00 1.45 C ATOM 293 O HIS 27 -3.972 11.211 -8.654 1.00 1.45 O ATOM 294 CB HIS 27 -2.326 13.486 -6.893 1.00 1.45 C ATOM 295 N CYS 28 -3.259 10.406 -6.650 1.00 1.72 N ATOM 297 CA CYS 28 -3.138 8.992 -7.050 1.00 1.72 C ATOM 298 CB CYS 28 -1.735 8.457 -6.722 1.00 1.72 C ATOM 299 SG CYS 28 -1.241 8.617 -4.986 1.00 1.72 S ATOM 300 C CYS 28 -4.205 8.112 -6.377 1.00 1.72 C ATOM 301 O CYS 28 -4.632 8.409 -5.255 1.00 1.72 O ATOM 302 N VAL 29 -4.620 7.044 -7.075 1.00 1.21 N ATOM 304 CA VAL 29 -5.635 6.081 -6.597 1.00 1.21 C ATOM 305 CB VAL 29 -6.689 5.716 -7.719 1.00 1.21 C ATOM 306 CG1 VAL 29 -7.675 6.861 -7.894 1.00 1.21 C ATOM 307 CG2 VAL 29 -6.008 5.403 -9.073 1.00 1.21 C ATOM 308 C VAL 29 -5.028 4.801 -5.978 1.00 1.21 C ATOM 309 O VAL 29 -3.990 4.316 -6.448 1.00 1.21 O ATOM 310 N GLU 30 -5.672 4.288 -4.919 1.00 1.31 N ATOM 312 CA GLU 30 -5.243 3.075 -4.195 1.00 1.31 C ATOM 313 CB GLU 30 -5.218 3.325 -2.679 1.00 1.31 C ATOM 314 CG GLU 30 -4.132 4.289 -2.207 1.00 1.31 C ATOM 315 CD GLU 30 -4.146 4.499 -0.705 1.00 1.31 C ATOM 316 OE1 GLU 30 -4.845 5.424 -0.238 1.00 1.31 O ATOM 317 OE2 GLU 30 -3.456 3.742 0.012 1.00 1.31 O ATOM 318 C GLU 30 -6.146 1.873 -4.507 1.00 1.31 C ATOM 319 O GLU 30 -7.354 2.043 -4.709 1.00 1.31 O ATOM 320 N VAL 31 -5.542 0.668 -4.519 1.00 1.31 N ATOM 322 CA VAL 31 -6.164 -0.659 -4.794 1.00 1.31 C ATOM 323 CB VAL 31 -6.626 -1.399 -3.437 1.00 1.31 C ATOM 324 CG1 VAL 31 -7.837 -0.711 -2.781 1.00 1.31 C ATOM 325 CG2 VAL 31 -6.864 -2.903 -3.657 1.00 1.31 C ATOM 326 C VAL 31 -7.217 -0.736 -5.945 1.00 1.31 C ATOM 327 O VAL 31 -8.267 -0.080 -5.882 1.00 1.31 O ATOM 328 N ARG 32 -6.901 -1.531 -6.977 1.00 1.21 N ATOM 330 CA ARG 32 -7.761 -1.736 -8.158 1.00 1.21 C ATOM 331 CB ARG 32 -6.983 -1.464 -9.455 1.00 1.21 C ATOM 332 CG ARG 32 -6.608 -0.002 -9.680 1.00 1.21 C ATOM 333 CD ARG 32 -5.842 0.178 -10.981 1.00 1.21 C ATOM 334 NE ARG 32 -5.473 1.576 -11.213 1.00 1.21 N ATOM 336 CZ ARG 32 -4.800 2.026 -12.273 1.00 1.21 C ATOM 337 NH1 ARG 32 -4.524 3.320 -12.370 1.00 1.21 N ATOM 340 NH2 ARG 32 -4.398 1.202 -13.236 1.00 1.21 N ATOM 343 C ARG 32 -8.343 -3.159 -8.193 1.00 1.21 C ATOM 344 O ARG 32 -7.688 -4.107 -7.741 1.00 1.21 O ATOM 345 N CYS 33 -9.568 -3.285 -8.724 1.00 1.04 N ATOM 347 CA CYS 33 -10.290 -4.566 -8.847 1.00 1.04 C ATOM 348 CB CYS 33 -11.706 -4.439 -8.269 1.00 1.04 C ATOM 349 SG CYS 33 -12.687 -3.081 -8.957 1.00 1.04 S ATOM 350 C CYS 33 -10.353 -5.052 -10.305 1.00 1.04 C ATOM 351 O CYS 33 -10.513 -4.238 -11.224 1.00 1.04 O ATOM 352 N SER 34 -10.213 -6.372 -10.495 1.00 0.98 N ATOM 354 CA SER 34 -10.242 -7.029 -11.815 1.00 0.98 C ATOM 355 CB SER 34 -8.965 -7.856 -12.024 1.00 0.98 C ATOM 356 OG SER 34 -7.810 -7.037 -11.959 1.00 0.98 O ATOM 358 C SER 34 -11.480 -7.929 -11.975 1.00 0.98 C ATOM 359 O SER 34 -11.877 -8.249 -13.105 1.00 0.98 O ATOM 360 N ASP 35 -12.093 -8.296 -10.841 1.00 0.95 N ATOM 362 CA ASP 35 -13.287 -9.162 -10.780 1.00 0.95 C ATOM 363 CB ASP 35 -13.238 -10.064 -9.520 1.00 0.95 C ATOM 364 CG ASP 35 -12.925 -9.293 -8.230 1.00 0.95 C ATOM 365 OD1 ASP 35 -13.877 -8.832 -7.562 1.00 0.95 O ATOM 366 OD2 ASP 35 -11.731 -9.165 -7.883 1.00 0.95 O ATOM 367 C ASP 35 -14.639 -8.414 -10.886 1.00 0.95 C ATOM 368 O ASP 35 -15.691 -9.045 -11.066 1.00 0.95 O ATOM 369 N THR 36 -14.581 -7.075 -10.816 1.00 0.00 N ATOM 371 CA THR 36 -15.761 -6.187 -10.892 1.00 0.00 C ATOM 372 CB THR 36 -15.609 -4.962 -9.925 1.00 0.00 C ATOM 373 OG1 THR 36 -14.780 -5.331 -8.816 1.00 0.00 O ATOM 375 CG2 THR 36 -16.974 -4.519 -9.375 1.00 0.00 C ATOM 376 C THR 36 -15.995 -5.697 -12.343 1.00 0.00 C ATOM 377 O THR 36 -17.147 -5.479 -12.745 1.00 0.00 O ATOM 378 N LYS 37 -14.905 -5.563 -13.113 1.00 0.00 N ATOM 380 CA LYS 37 -14.940 -5.108 -14.517 1.00 0.00 C ATOM 381 CB LYS 37 -13.847 -4.047 -14.792 1.00 0.00 C ATOM 382 CG LYS 37 -12.407 -4.379 -14.345 1.00 0.00 C ATOM 383 CD LYS 37 -11.442 -3.271 -14.740 1.00 0.00 C ATOM 384 CE LYS 37 -10.011 -3.620 -14.362 1.00 0.00 C ATOM 385 NZ LYS 37 -9.058 -2.542 -14.743 1.00 0.00 N ATOM 389 C LYS 37 -14.878 -6.251 -15.552 1.00 0.00 C ATOM 390 O LYS 37 -15.591 -6.209 -16.559 1.00 0.00 O ATOM 391 N TYR 38 -14.041 -7.266 -15.263 1.00 0.00 N ATOM 393 CA TYR 38 -13.785 -8.485 -16.081 1.00 0.00 C ATOM 394 CB TYR 38 -14.718 -9.670 -15.669 1.00 0.00 C ATOM 395 CG TYR 38 -16.237 -9.426 -15.672 1.00 0.00 C ATOM 396 CD1 TYR 38 -17.014 -9.667 -16.832 1.00 0.00 C ATOM 397 CE1 TYR 38 -18.424 -9.474 -16.829 1.00 0.00 C ATOM 398 CD2 TYR 38 -16.910 -8.985 -14.506 1.00 0.00 C ATOM 399 CE2 TYR 38 -18.319 -8.789 -14.495 1.00 0.00 C ATOM 400 CZ TYR 38 -19.064 -9.037 -15.658 1.00 0.00 C ATOM 401 OH TYR 38 -20.428 -8.848 -15.649 1.00 0.00 O ATOM 403 C TYR 38 -13.690 -8.363 -17.623 1.00 0.00 C ATOM 404 O TYR 38 -14.630 -7.887 -18.273 1.00 0.00 O ATOM 405 N THR 39 -12.548 -8.798 -18.178 1.00 0.00 N ATOM 407 CA THR 39 -12.262 -8.768 -19.627 1.00 0.00 C ATOM 408 CB THR 39 -10.809 -8.269 -19.917 1.00 0.00 C ATOM 409 OG1 THR 39 -9.875 -8.997 -19.108 1.00 0.00 O ATOM 411 CG2 THR 39 -10.680 -6.778 -19.628 1.00 0.00 C ATOM 412 C THR 39 -12.480 -10.142 -20.296 1.00 0.00 C ATOM 413 O THR 39 -12.249 -11.184 -19.664 1.00 0.00 O ATOM 414 N LEU 40 -12.951 -10.123 -21.551 1.00 0.00 N ATOM 416 CA LEU 40 -13.223 -11.332 -22.353 1.00 0.00 C ATOM 417 CB LEU 40 -14.647 -11.279 -22.972 1.00 0.00 C ATOM 418 CG LEU 40 -15.308 -10.090 -23.713 1.00 0.00 C ATOM 419 CD1 LEU 40 -14.965 -10.070 -25.212 1.00 0.00 C ATOM 420 CD2 LEU 40 -16.814 -10.195 -23.543 1.00 0.00 C ATOM 421 C LEU 40 -12.156 -11.597 -23.435 1.00 0.00 C ATOM 422 O LEU 40 -11.828 -12.757 -23.711 1.00 0.00 O ATOM 423 N CYS 41 -11.634 -10.513 -24.028 1.00 0.00 N ATOM 425 CA CYS 41 -10.605 -10.560 -25.084 1.00 0.00 C ATOM 426 CB CYS 41 -11.035 -9.702 -26.285 1.00 0.00 C ATOM 427 SG CYS 41 -9.976 -9.838 -27.750 1.00 0.00 S ATOM 428 C CYS 41 -9.252 -10.081 -24.550 1.00 0.00 C ATOM 429 O CYS 41 -8.216 -10.596 -25.022 1.00 0.00 O ATOM 430 OXT CYS 41 -9.247 -9.205 -23.659 1.00 0.00 O TER END