####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS402_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS402_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.10 1.10 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.10 1.10 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 2 - 41 0.89 1.12 LCS_AVERAGE: 95.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 5 11 36 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 40 41 41 12 30 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 40 41 41 12 33 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 40 41 41 15 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 40 41 41 12 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 40 41 41 3 4 5 26 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 40 41 41 6 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 40 41 41 18 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 40 41 41 12 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 40 41 41 16 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 40 41 41 6 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 40 41 41 6 18 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 40 41 41 18 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 40 41 41 4 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 40 41 41 10 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 40 41 41 3 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 40 41 41 3 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 40 41 41 3 27 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 40 41 41 5 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 40 41 41 6 33 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 40 41 41 12 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 40 41 41 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 40 41 41 4 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 98.45 ( 95.36 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 19 34 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 46.34 82.93 95.12 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.60 0.74 0.74 0.89 0.89 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 GDT RMS_ALL_AT 1.13 1.14 1.13 1.13 1.12 1.12 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 1.10 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.040 0 0.166 0.785 6.524 6.364 4.242 6.044 LGA Q 2 Q 2 1.208 0 0.221 1.197 4.594 70.000 45.657 4.594 LGA E 3 E 3 0.921 0 0.080 1.144 4.794 81.818 59.798 1.842 LGA T 4 T 4 0.627 0 0.020 1.133 2.513 81.818 67.792 2.513 LGA R 5 R 5 0.464 0 0.019 0.366 2.657 100.000 71.570 2.657 LGA K 6 K 6 0.357 0 0.029 1.258 6.683 95.455 57.172 6.683 LGA K 7 K 7 0.464 0 0.024 0.654 2.524 100.000 71.313 2.466 LGA C 8 C 8 0.491 0 0.023 0.026 0.571 90.909 90.909 0.571 LGA T 9 T 9 0.608 0 0.018 0.098 0.950 90.909 87.013 0.748 LGA E 10 E 10 0.357 0 0.031 0.520 1.564 100.000 90.505 1.564 LGA M 11 M 11 0.164 0 0.045 1.086 4.687 100.000 78.636 4.687 LGA K 12 K 12 0.429 0 0.043 0.625 1.891 100.000 76.162 1.578 LGA K 13 K 13 0.331 0 0.051 0.584 1.982 100.000 84.646 0.853 LGA K 14 K 14 0.400 0 0.105 0.991 5.396 100.000 68.081 5.396 LGA F 15 F 15 0.830 0 0.154 0.399 2.458 73.636 69.917 2.089 LGA K 16 K 16 3.087 0 0.668 1.578 5.962 21.364 15.354 5.962 LGA N 17 N 17 0.563 0 0.324 0.567 2.088 82.273 70.455 1.261 LGA C 18 C 18 0.763 0 0.034 0.045 0.967 81.818 81.818 0.826 LGA E 19 E 19 0.867 0 0.180 0.422 2.502 81.818 65.253 1.743 LGA V 20 V 20 0.691 0 0.077 0.093 0.857 81.818 81.818 0.704 LGA R 21 R 21 0.718 0 0.016 1.121 5.284 81.818 46.446 5.284 LGA C 22 C 22 1.028 0 0.123 0.920 4.395 73.636 60.909 4.395 LGA D 23 D 23 1.428 0 0.313 1.146 3.805 50.000 42.727 2.697 LGA E 24 E 24 0.512 0 0.151 0.682 4.002 90.909 59.394 4.002 LGA S 25 S 25 0.520 0 0.083 0.668 2.521 81.818 75.758 2.521 LGA N 26 N 26 0.492 0 0.142 1.173 5.022 86.364 61.591 5.022 LGA H 27 H 27 0.824 0 0.096 0.319 2.493 77.727 59.273 2.493 LGA C 28 C 28 0.842 0 0.174 0.770 2.464 74.091 69.394 2.464 LGA V 29 V 29 0.272 0 0.086 0.114 0.388 100.000 100.000 0.266 LGA E 30 E 30 0.380 0 0.016 0.606 2.661 100.000 71.313 2.661 LGA V 31 V 31 0.259 0 0.042 1.167 2.894 100.000 80.000 1.852 LGA R 32 R 32 0.263 0 0.230 1.165 6.703 95.455 58.678 6.703 LGA C 33 C 33 1.089 0 0.526 0.979 4.378 64.091 52.121 4.378 LGA S 34 S 34 1.026 0 0.257 0.573 3.157 61.818 57.879 3.157 LGA D 35 D 35 1.787 0 0.223 1.041 7.260 65.909 36.364 7.260 LGA T 36 T 36 1.134 0 0.048 0.154 1.616 73.636 68.052 1.616 LGA K 37 K 37 0.408 0 0.087 1.161 2.793 83.182 68.889 2.793 LGA Y 38 Y 38 1.065 0 0.014 1.392 5.580 82.273 51.515 5.580 LGA T 39 T 39 0.862 0 0.107 0.115 1.813 70.000 65.974 1.245 LGA L 40 L 40 0.383 0 0.088 0.965 3.918 100.000 72.045 3.918 LGA C 41 C 41 1.162 0 0.107 0.803 3.311 58.636 59.481 3.311 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.099 1.249 2.127 80.765 64.778 32.417 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.10 94.512 97.636 3.419 LGA_LOCAL RMSD: 1.099 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.099 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.099 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.958528 * X + 0.236570 * Y + 0.158928 * Z + -4.629935 Y_new = 0.051111 * X + 0.405917 * Y + -0.912480 * Z + -12.663388 Z_new = -0.280376 * X + 0.882761 * Y + 0.376992 * Z + 0.364205 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.053271 0.284186 1.167182 [DEG: 3.0522 16.2827 66.8746 ] ZXZ: 0.172442 1.184250 -0.307536 [DEG: 9.8802 67.8525 -17.6205 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS402_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS402_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.10 97.636 1.10 REMARK ---------------------------------------------------------- MOLECULE T0955TS402_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 -4.630 -12.663 0.364 1.00 0.00 N ATOM 2 CA SER 1 -3.232 -12.589 -0.045 1.00 0.00 C ATOM 3 C SER 1 -2.368 -11.984 1.054 1.00 0.00 C ATOM 4 O SER 1 -2.294 -10.764 1.199 1.00 0.00 O ATOM 5 CB SER 1 -3.102 -11.767 -1.312 1.00 0.00 C ATOM 6 OG SER 1 -1.759 -11.626 -1.683 1.00 0.00 O ATOM 14 N GLN 2 -1.716 -12.845 1.828 1.00 0.00 N ATOM 15 CA GLN 2 -0.807 -12.397 2.876 1.00 0.00 C ATOM 16 C GLN 2 0.346 -11.588 2.296 1.00 0.00 C ATOM 17 O GLN 2 0.799 -10.613 2.897 1.00 0.00 O ATOM 18 CB GLN 2 -0.263 -13.593 3.662 1.00 0.00 C ATOM 19 CG GLN 2 -1.295 -14.286 4.536 1.00 0.00 C ATOM 20 CD GLN 2 -0.726 -15.491 5.260 1.00 0.00 C ATOM 21 OE1 GLN 2 0.280 -16.067 4.839 1.00 0.00 O ATOM 22 NE2 GLN 2 -1.367 -15.877 6.356 1.00 0.00 N ATOM 31 N GLU 3 0.819 -11.999 1.123 1.00 0.00 N ATOM 32 CA GLU 3 1.909 -11.303 0.451 1.00 0.00 C ATOM 33 C GLU 3 1.563 -9.839 0.210 1.00 0.00 C ATOM 34 O GLU 3 2.368 -8.948 0.480 1.00 0.00 O ATOM 35 CB GLU 3 2.238 -11.985 -0.879 1.00 0.00 C ATOM 36 CG GLU 3 3.367 -11.329 -1.660 1.00 0.00 C ATOM 37 CD GLU 3 3.666 -12.029 -2.956 1.00 0.00 C ATOM 38 OE1 GLU 3 3.038 -13.024 -3.231 1.00 0.00 O ATOM 39 OE2 GLU 3 4.524 -11.570 -3.673 1.00 0.00 O ATOM 46 N THR 4 0.360 -9.598 -0.301 1.00 0.00 N ATOM 47 CA THR 4 -0.093 -8.241 -0.585 1.00 0.00 C ATOM 48 C THR 4 -0.193 -7.415 0.690 1.00 0.00 C ATOM 49 O THR 4 0.192 -6.246 0.715 1.00 0.00 O ATOM 50 CB THR 4 -1.455 -8.252 -1.303 1.00 0.00 C ATOM 51 OG1 THR 4 -1.364 -9.040 -2.497 1.00 0.00 O ATOM 52 CG2 THR 4 -1.878 -6.836 -1.665 1.00 0.00 C ATOM 60 N ARG 5 -0.711 -8.028 1.748 1.00 0.00 N ATOM 61 CA ARG 5 -0.855 -7.352 3.032 1.00 0.00 C ATOM 62 C ARG 5 0.501 -6.956 3.600 1.00 0.00 C ATOM 63 O ARG 5 0.651 -5.883 4.183 1.00 0.00 O ATOM 64 CB ARG 5 -1.579 -8.245 4.030 1.00 0.00 C ATOM 65 CG ARG 5 -3.060 -8.446 3.751 1.00 0.00 C ATOM 66 CD ARG 5 -3.698 -9.316 4.771 1.00 0.00 C ATOM 67 NE ARG 5 -5.114 -9.513 4.509 1.00 0.00 N ATOM 68 CZ ARG 5 -5.956 -10.185 5.317 1.00 0.00 C ATOM 69 NH1 ARG 5 -5.510 -10.718 6.432 1.00 0.00 N ATOM 70 NH2 ARG 5 -7.230 -10.309 4.988 1.00 0.00 N ATOM 84 N LYS 6 1.488 -7.829 3.428 1.00 0.00 N ATOM 85 CA LYS 6 2.848 -7.545 3.866 1.00 0.00 C ATOM 86 C LYS 6 3.441 -6.371 3.097 1.00 0.00 C ATOM 87 O LYS 6 4.101 -5.507 3.675 1.00 0.00 O ATOM 88 CB LYS 6 3.734 -8.781 3.702 1.00 0.00 C ATOM 89 CG LYS 6 3.446 -9.898 4.696 1.00 0.00 C ATOM 90 CD LYS 6 4.301 -11.123 4.414 1.00 0.00 C ATOM 91 CE LYS 6 3.983 -12.256 5.379 1.00 0.00 C ATOM 92 NZ LYS 6 4.776 -13.480 5.083 1.00 0.00 N ATOM 106 N LYS 7 3.202 -6.344 1.791 1.00 0.00 N ATOM 107 CA LYS 7 3.625 -5.226 0.956 1.00 0.00 C ATOM 108 C LYS 7 2.940 -3.933 1.378 1.00 0.00 C ATOM 109 O LYS 7 3.549 -2.864 1.367 1.00 0.00 O ATOM 110 CB LYS 7 3.338 -5.518 -0.518 1.00 0.00 C ATOM 111 CG LYS 7 4.245 -6.571 -1.139 1.00 0.00 C ATOM 112 CD LYS 7 3.821 -6.896 -2.563 1.00 0.00 C ATOM 113 CE LYS 7 4.733 -7.940 -3.190 1.00 0.00 C ATOM 114 NZ LYS 7 4.203 -8.436 -4.488 1.00 0.00 N ATOM 128 N CYS 8 1.667 -4.038 1.748 1.00 0.00 N ATOM 129 CA CYS 8 0.916 -2.890 2.240 1.00 0.00 C ATOM 130 C CYS 8 1.539 -2.327 3.511 1.00 0.00 C ATOM 131 O CYS 8 1.704 -1.115 3.649 1.00 0.00 O ATOM 132 CB CYS 8 -0.536 -3.275 2.517 1.00 0.00 C ATOM 133 SG CYS 8 -1.579 -1.897 3.054 1.00 0.00 S ATOM 139 N THR 9 1.881 -3.215 4.438 1.00 0.00 N ATOM 140 CA THR 9 2.501 -2.809 5.694 1.00 0.00 C ATOM 141 C THR 9 3.771 -2.007 5.449 1.00 0.00 C ATOM 142 O THR 9 3.981 -0.956 6.056 1.00 0.00 O ATOM 143 CB THR 9 2.823 -4.033 6.574 1.00 0.00 C ATOM 144 OG1 THR 9 1.611 -4.726 6.894 1.00 0.00 O ATOM 145 CG2 THR 9 3.511 -3.599 7.860 1.00 0.00 C ATOM 153 N GLU 10 4.618 -2.507 4.555 1.00 0.00 N ATOM 154 CA GLU 10 5.853 -1.817 4.201 1.00 0.00 C ATOM 155 C GLU 10 5.570 -0.421 3.664 1.00 0.00 C ATOM 156 O GLU 10 6.179 0.557 4.099 1.00 0.00 O ATOM 157 CB GLU 10 6.636 -2.625 3.163 1.00 0.00 C ATOM 158 CG GLU 10 7.955 -1.996 2.742 1.00 0.00 C ATOM 159 CD GLU 10 8.703 -2.826 1.734 1.00 0.00 C ATOM 160 OE1 GLU 10 8.220 -3.873 1.379 1.00 0.00 O ATOM 161 OE2 GLU 10 9.760 -2.410 1.320 1.00 0.00 O ATOM 168 N MET 11 4.645 -0.334 2.715 1.00 0.00 N ATOM 169 CA MET 11 4.299 0.941 2.097 1.00 0.00 C ATOM 170 C MET 11 3.679 1.894 3.110 1.00 0.00 C ATOM 171 O MET 11 3.924 3.100 3.074 1.00 0.00 O ATOM 172 CB MET 11 3.347 0.717 0.923 1.00 0.00 C ATOM 173 CG MET 11 3.982 0.042 -0.284 1.00 0.00 C ATOM 174 SD MET 11 2.797 -0.280 -1.604 1.00 0.00 S ATOM 175 CE MET 11 2.471 1.383 -2.181 1.00 0.00 C ATOM 185 N LYS 12 2.874 1.347 4.015 1.00 0.00 N ATOM 186 CA LYS 12 2.259 2.139 5.073 1.00 0.00 C ATOM 187 C LYS 12 3.314 2.840 5.919 1.00 0.00 C ATOM 188 O LYS 12 3.148 4.000 6.299 1.00 0.00 O ATOM 189 CB LYS 12 1.376 1.258 5.958 1.00 0.00 C ATOM 190 CG LYS 12 0.629 2.011 7.050 1.00 0.00 C ATOM 191 CD LYS 12 -0.290 1.085 7.831 1.00 0.00 C ATOM 192 CE LYS 12 -1.012 1.829 8.945 1.00 0.00 C ATOM 193 NZ LYS 12 -1.916 0.934 9.718 1.00 0.00 N ATOM 207 N LYS 13 4.399 2.132 6.211 1.00 0.00 N ATOM 208 CA LYS 13 5.490 2.690 7.001 1.00 0.00 C ATOM 209 C LYS 13 6.340 3.642 6.170 1.00 0.00 C ATOM 210 O LYS 13 6.822 4.657 6.671 1.00 0.00 O ATOM 211 CB LYS 13 6.361 1.573 7.577 1.00 0.00 C ATOM 212 CG LYS 13 5.679 0.732 8.648 1.00 0.00 C ATOM 213 CD LYS 13 6.590 -0.382 9.140 1.00 0.00 C ATOM 214 CE LYS 13 5.909 -1.225 10.209 1.00 0.00 C ATOM 215 NZ LYS 13 6.774 -2.344 10.671 1.00 0.00 N ATOM 229 N LYS 14 6.522 3.306 4.897 1.00 0.00 N ATOM 230 CA LYS 14 7.404 4.070 4.022 1.00 0.00 C ATOM 231 C LYS 14 6.767 5.392 3.616 1.00 0.00 C ATOM 232 O LYS 14 7.353 6.458 3.801 1.00 0.00 O ATOM 233 CB LYS 14 7.762 3.254 2.778 1.00 0.00 C ATOM 234 CG LYS 14 8.677 3.975 1.796 1.00 0.00 C ATOM 235 CD LYS 14 9.020 3.087 0.608 1.00 0.00 C ATOM 236 CE LYS 14 9.907 3.816 -0.390 1.00 0.00 C ATOM 237 NZ LYS 14 10.268 2.954 -1.546 1.00 0.00 N ATOM 251 N PHE 15 5.562 5.317 3.061 1.00 0.00 N ATOM 252 CA PHE 15 4.921 6.479 2.457 1.00 0.00 C ATOM 253 C PHE 15 4.261 7.355 3.514 1.00 0.00 C ATOM 254 O PHE 15 3.060 7.246 3.763 1.00 0.00 O ATOM 255 CB PHE 15 3.878 6.041 1.428 1.00 0.00 C ATOM 256 CG PHE 15 4.470 5.548 0.137 1.00 0.00 C ATOM 257 CD1 PHE 15 4.695 4.195 -0.066 1.00 0.00 C ATOM 258 CD2 PHE 15 4.803 6.437 -0.874 1.00 0.00 C ATOM 259 CE1 PHE 15 5.240 3.741 -1.253 1.00 0.00 C ATOM 260 CE2 PHE 15 5.347 5.986 -2.060 1.00 0.00 C ATOM 261 CZ PHE 15 5.566 4.636 -2.251 1.00 0.00 C ATOM 271 N LYS 16 5.053 8.224 4.134 1.00 0.00 N ATOM 272 CA LYS 16 4.554 9.096 5.191 1.00 0.00 C ATOM 273 C LYS 16 3.503 10.061 4.657 1.00 0.00 C ATOM 274 O LYS 16 3.604 10.542 3.528 1.00 0.00 O ATOM 275 CB LYS 16 5.705 9.874 5.831 1.00 0.00 C ATOM 276 CG LYS 16 6.763 9.001 6.493 1.00 0.00 C ATOM 277 CD LYS 16 6.188 8.242 7.680 1.00 0.00 C ATOM 278 CE LYS 16 7.291 7.645 8.543 1.00 0.00 C ATOM 279 NZ LYS 16 8.143 6.695 7.777 1.00 0.00 N ATOM 293 N ASN 17 2.495 10.342 5.475 1.00 0.00 N ATOM 294 CA ASN 17 1.456 11.297 5.111 1.00 0.00 C ATOM 295 C ASN 17 0.761 10.890 3.818 1.00 0.00 C ATOM 296 O ASN 17 0.411 11.738 2.996 1.00 0.00 O ATOM 297 CB ASN 17 2.034 12.695 4.990 1.00 0.00 C ATOM 298 CG ASN 17 2.624 13.191 6.281 1.00 0.00 C ATOM 299 OD1 ASN 17 2.065 12.965 7.360 1.00 0.00 O ATOM 300 ND2 ASN 17 3.743 13.863 6.191 1.00 0.00 N ATOM 307 N CYS 18 0.564 9.588 3.643 1.00 0.00 N ATOM 308 CA CYS 18 -0.144 9.070 2.479 1.00 0.00 C ATOM 309 C CYS 18 -1.207 8.058 2.885 1.00 0.00 C ATOM 310 O CYS 18 -1.202 7.556 4.009 1.00 0.00 O ATOM 311 CB CYS 18 0.833 8.411 1.504 1.00 0.00 C ATOM 312 SG CYS 18 2.203 9.478 0.997 1.00 0.00 S ATOM 318 N GLU 19 -2.119 7.764 1.964 1.00 0.00 N ATOM 319 CA GLU 19 -3.102 6.707 2.171 1.00 0.00 C ATOM 320 C GLU 19 -2.740 5.455 1.383 1.00 0.00 C ATOM 321 O GLU 19 -2.578 5.503 0.163 1.00 0.00 O ATOM 322 CB GLU 19 -4.497 7.190 1.766 1.00 0.00 C ATOM 323 CG GLU 19 -5.602 6.164 1.972 1.00 0.00 C ATOM 324 CD GLU 19 -6.962 6.688 1.604 1.00 0.00 C ATOM 325 OE1 GLU 19 -7.063 7.844 1.273 1.00 0.00 O ATOM 326 OE2 GLU 19 -7.902 5.929 1.655 1.00 0.00 O ATOM 333 N VAL 20 -2.614 4.335 2.086 1.00 0.00 N ATOM 334 CA VAL 20 -2.242 3.074 1.457 1.00 0.00 C ATOM 335 C VAL 20 -3.367 2.052 1.564 1.00 0.00 C ATOM 336 O VAL 20 -3.926 1.840 2.639 1.00 0.00 O ATOM 337 CB VAL 20 -0.971 2.502 2.115 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.581 1.184 1.465 1.00 0.00 C ATOM 339 CG2 VAL 20 0.163 3.511 2.011 1.00 0.00 C ATOM 349 N ARG 21 -3.696 1.422 0.441 1.00 0.00 N ATOM 350 CA ARG 21 -4.820 0.495 0.383 1.00 0.00 C ATOM 351 C ARG 21 -4.381 -0.873 -0.124 1.00 0.00 C ATOM 352 O ARG 21 -3.764 -0.984 -1.183 1.00 0.00 O ATOM 353 CB ARG 21 -5.916 1.040 -0.521 1.00 0.00 C ATOM 354 CG ARG 21 -6.572 2.321 -0.030 1.00 0.00 C ATOM 355 CD ARG 21 -7.640 2.780 -0.954 1.00 0.00 C ATOM 356 NE ARG 21 -8.265 4.009 -0.493 1.00 0.00 N ATOM 357 CZ ARG 21 -9.267 4.644 -1.132 1.00 0.00 C ATOM 358 NH1 ARG 21 -9.746 4.156 -2.254 1.00 0.00 N ATOM 359 NH2 ARG 21 -9.769 5.759 -0.628 1.00 0.00 N ATOM 373 N CYS 22 -4.704 -1.912 0.638 1.00 0.00 N ATOM 374 CA CYS 22 -4.391 -3.280 0.241 1.00 0.00 C ATOM 375 C CYS 22 -5.481 -3.856 -0.653 1.00 0.00 C ATOM 376 O CYS 22 -6.644 -3.935 -0.256 1.00 0.00 O ATOM 377 CB CYS 22 -4.222 -4.172 1.472 1.00 0.00 C ATOM 378 SG CYS 22 -3.902 -5.910 1.085 1.00 0.00 S ATOM 384 N ASP 23 -5.099 -4.258 -1.859 1.00 0.00 N ATOM 385 CA ASP 23 -6.040 -4.850 -2.803 1.00 0.00 C ATOM 386 C ASP 23 -5.731 -6.322 -3.039 1.00 0.00 C ATOM 387 O ASP 23 -4.813 -6.662 -3.787 1.00 0.00 O ATOM 388 CB ASP 23 -6.010 -4.096 -4.136 1.00 0.00 C ATOM 389 CG ASP 23 -6.952 -4.689 -5.173 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.355 -5.817 -5.007 1.00 0.00 O ATOM 391 OD2 ASP 23 -7.262 -4.010 -6.122 1.00 0.00 O ATOM 396 N GLU 24 -6.501 -7.194 -2.397 1.00 0.00 N ATOM 397 CA GLU 24 -6.221 -8.625 -2.418 1.00 0.00 C ATOM 398 C GLU 24 -6.890 -9.299 -3.610 1.00 0.00 C ATOM 399 O GLU 24 -6.783 -10.513 -3.788 1.00 0.00 O ATOM 400 CB GLU 24 -6.693 -9.280 -1.118 1.00 0.00 C ATOM 401 CG GLU 24 -5.948 -8.816 0.126 1.00 0.00 C ATOM 402 CD GLU 24 -6.366 -9.554 1.367 1.00 0.00 C ATOM 403 OE1 GLU 24 -6.117 -10.732 1.447 1.00 0.00 O ATOM 404 OE2 GLU 24 -6.936 -8.938 2.237 1.00 0.00 O ATOM 411 N SER 25 -7.580 -8.506 -4.422 1.00 0.00 N ATOM 412 CA SER 25 -8.276 -9.026 -5.592 1.00 0.00 C ATOM 413 C SER 25 -7.457 -8.815 -6.859 1.00 0.00 C ATOM 414 O SER 25 -7.558 -9.588 -7.811 1.00 0.00 O ATOM 415 CB SER 25 -9.629 -8.356 -5.736 1.00 0.00 C ATOM 416 OG SER 25 -9.486 -6.995 -6.036 1.00 0.00 O ATOM 422 N ASN 26 -6.647 -7.761 -6.865 1.00 0.00 N ATOM 423 CA ASN 26 -5.700 -7.530 -7.949 1.00 0.00 C ATOM 424 C ASN 26 -4.270 -7.799 -7.497 1.00 0.00 C ATOM 425 O ASN 26 -3.316 -7.516 -8.223 1.00 0.00 O ATOM 426 CB ASN 26 -5.834 -6.116 -8.483 1.00 0.00 C ATOM 427 CG ASN 26 -7.120 -5.900 -9.231 1.00 0.00 C ATOM 428 OD1 ASN 26 -7.276 -6.359 -10.368 1.00 0.00 O ATOM 429 ND2 ASN 26 -8.046 -5.211 -8.614 1.00 0.00 N ATOM 436 N HIS 27 -4.128 -8.346 -6.295 1.00 0.00 N ATOM 437 CA HIS 27 -2.823 -8.757 -5.789 1.00 0.00 C ATOM 438 C HIS 27 -1.818 -7.614 -5.866 1.00 0.00 C ATOM 439 O HIS 27 -0.706 -7.786 -6.363 1.00 0.00 O ATOM 440 CB HIS 27 -2.294 -9.962 -6.573 1.00 0.00 C ATOM 441 CG HIS 27 -3.227 -11.134 -6.577 1.00 0.00 C ATOM 442 ND1 HIS 27 -3.466 -11.897 -5.454 1.00 0.00 N ATOM 443 CD2 HIS 27 -3.979 -11.672 -7.566 1.00 0.00 C ATOM 444 CE1 HIS 27 -4.327 -12.855 -5.753 1.00 0.00 C ATOM 445 NE2 HIS 27 -4.652 -12.740 -7.027 1.00 0.00 N ATOM 453 N CYS 28 -2.217 -6.449 -5.370 1.00 0.00 N ATOM 454 CA CYS 28 -1.374 -5.261 -5.431 1.00 0.00 C ATOM 455 C CYS 28 -1.716 -4.283 -4.314 1.00 0.00 C ATOM 456 O CYS 28 -2.720 -4.446 -3.619 1.00 0.00 O ATOM 457 CB CYS 28 -1.530 -4.560 -6.781 1.00 0.00 C ATOM 458 SG CYS 28 -3.185 -3.895 -7.082 1.00 0.00 S ATOM 464 N VAL 29 -0.879 -3.265 -4.148 1.00 0.00 N ATOM 465 CA VAL 29 -1.143 -2.205 -3.183 1.00 0.00 C ATOM 466 C VAL 29 -1.085 -0.833 -3.842 1.00 0.00 C ATOM 467 O VAL 29 -0.173 -0.544 -4.617 1.00 0.00 O ATOM 468 CB VAL 29 -0.121 -2.263 -2.032 1.00 0.00 C ATOM 469 CG1 VAL 29 -0.382 -1.146 -1.031 1.00 0.00 C ATOM 470 CG2 VAL 29 -0.183 -3.621 -1.352 1.00 0.00 C ATOM 480 N GLU 30 -2.062 0.010 -3.529 1.00 0.00 N ATOM 481 CA GLU 30 -2.085 1.378 -4.033 1.00 0.00 C ATOM 482 C GLU 30 -1.771 2.377 -2.927 1.00 0.00 C ATOM 483 O GLU 30 -2.144 2.177 -1.771 1.00 0.00 O ATOM 484 CB GLU 30 -3.448 1.697 -4.650 1.00 0.00 C ATOM 485 CG GLU 30 -3.754 0.930 -5.929 1.00 0.00 C ATOM 486 CD GLU 30 -5.070 1.319 -6.543 1.00 0.00 C ATOM 487 OE1 GLU 30 -5.994 1.577 -5.811 1.00 0.00 O ATOM 488 OE2 GLU 30 -5.151 1.359 -7.748 1.00 0.00 O ATOM 495 N VAL 31 -1.084 3.456 -3.288 1.00 0.00 N ATOM 496 CA VAL 31 -0.892 4.583 -2.382 1.00 0.00 C ATOM 497 C VAL 31 -1.143 5.908 -3.090 1.00 0.00 C ATOM 498 O VAL 31 -0.718 6.104 -4.229 1.00 0.00 O ATOM 499 CB VAL 31 0.537 4.572 -1.810 1.00 0.00 C ATOM 500 CG1 VAL 31 1.561 4.607 -2.935 1.00 0.00 C ATOM 501 CG2 VAL 31 0.727 5.751 -0.868 1.00 0.00 C ATOM 511 N ARG 32 -1.836 6.814 -2.411 1.00 0.00 N ATOM 512 CA ARG 32 -2.142 8.125 -2.972 1.00 0.00 C ATOM 513 C ARG 32 -1.857 9.235 -1.968 1.00 0.00 C ATOM 514 O ARG 32 -2.102 9.079 -0.771 1.00 0.00 O ATOM 515 CB ARG 32 -3.598 8.196 -3.403 1.00 0.00 C ATOM 516 CG ARG 32 -4.022 9.524 -4.010 1.00 0.00 C ATOM 517 CD ARG 32 -5.401 9.464 -4.556 1.00 0.00 C ATOM 518 NE ARG 32 -5.842 10.753 -5.064 1.00 0.00 N ATOM 519 CZ ARG 32 -7.045 10.986 -5.623 1.00 0.00 C ATOM 520 NH1 ARG 32 -7.915 10.007 -5.741 1.00 0.00 N ATOM 521 NH2 ARG 32 -7.350 12.197 -6.055 1.00 0.00 N ATOM 535 N CYS 33 -1.339 10.354 -2.462 1.00 0.00 N ATOM 536 CA CYS 33 -1.293 11.586 -1.682 1.00 0.00 C ATOM 537 C CYS 33 -1.426 12.810 -2.578 1.00 0.00 C ATOM 538 O CYS 33 -0.581 13.055 -3.439 1.00 0.00 O ATOM 539 CB CYS 33 0.015 11.675 -0.896 1.00 0.00 C ATOM 540 SG CYS 33 0.136 13.130 0.174 1.00 0.00 S ATOM 546 N SER 34 -2.491 13.576 -2.370 1.00 0.00 N ATOM 547 CA SER 34 -2.870 14.631 -3.303 1.00 0.00 C ATOM 548 C SER 34 -3.128 14.069 -4.696 1.00 0.00 C ATOM 549 O SER 34 -3.993 13.214 -4.879 1.00 0.00 O ATOM 550 CB SER 34 -1.783 15.687 -3.367 1.00 0.00 C ATOM 551 OG SER 34 -2.239 16.838 -4.023 1.00 0.00 O ATOM 557 N ASP 35 -2.370 14.555 -5.673 1.00 0.00 N ATOM 558 CA ASP 35 -2.546 14.136 -7.058 1.00 0.00 C ATOM 559 C ASP 35 -1.466 13.146 -7.477 1.00 0.00 C ATOM 560 O ASP 35 -1.291 12.870 -8.663 1.00 0.00 O ATOM 561 CB ASP 35 -2.524 15.349 -7.992 1.00 0.00 C ATOM 562 CG ASP 35 -3.700 16.291 -7.768 1.00 0.00 C ATOM 563 OD1 ASP 35 -4.797 15.811 -7.604 1.00 0.00 O ATOM 564 OD2 ASP 35 -3.490 17.480 -7.763 1.00 0.00 O ATOM 569 N THR 36 -0.745 12.616 -6.495 1.00 0.00 N ATOM 570 CA THR 36 0.315 11.650 -6.759 1.00 0.00 C ATOM 571 C THR 36 -0.095 10.250 -6.323 1.00 0.00 C ATOM 572 O THR 36 -0.600 10.057 -5.217 1.00 0.00 O ATOM 573 CB THR 36 1.621 12.052 -6.049 1.00 0.00 C ATOM 574 OG1 THR 36 2.064 13.323 -6.542 1.00 0.00 O ATOM 575 CG2 THR 36 2.703 11.012 -6.294 1.00 0.00 C ATOM 583 N LYS 37 0.126 9.274 -7.198 1.00 0.00 N ATOM 584 CA LYS 37 -0.242 7.892 -6.914 1.00 0.00 C ATOM 585 C LYS 37 0.862 6.931 -7.337 1.00 0.00 C ATOM 586 O LYS 37 1.511 7.129 -8.363 1.00 0.00 O ATOM 587 CB LYS 37 -1.551 7.530 -7.617 1.00 0.00 C ATOM 588 CG LYS 37 -2.003 6.092 -7.404 1.00 0.00 C ATOM 589 CD LYS 37 -3.334 5.823 -8.091 1.00 0.00 C ATOM 590 CE LYS 37 -3.755 4.369 -7.934 1.00 0.00 C ATOM 591 NZ LYS 37 -5.036 4.082 -8.635 1.00 0.00 N ATOM 605 N TYR 38 1.070 5.889 -6.537 1.00 0.00 N ATOM 606 CA TYR 38 1.934 4.784 -6.931 1.00 0.00 C ATOM 607 C TYR 38 1.230 3.444 -6.751 1.00 0.00 C ATOM 608 O TYR 38 0.319 3.316 -5.933 1.00 0.00 O ATOM 609 CB TYR 38 3.237 4.810 -6.129 1.00 0.00 C ATOM 610 CG TYR 38 3.983 6.122 -6.220 1.00 0.00 C ATOM 611 CD1 TYR 38 3.784 7.101 -5.256 1.00 0.00 C ATOM 612 CD2 TYR 38 4.865 6.349 -7.267 1.00 0.00 C ATOM 613 CE1 TYR 38 4.466 8.300 -5.339 1.00 0.00 C ATOM 614 CE2 TYR 38 5.545 7.548 -7.349 1.00 0.00 C ATOM 615 CZ TYR 38 5.348 8.521 -6.390 1.00 0.00 C ATOM 616 OH TYR 38 6.026 9.715 -6.473 1.00 0.00 O ATOM 626 N THR 39 1.658 2.449 -7.519 1.00 0.00 N ATOM 627 CA THR 39 1.162 1.087 -7.356 1.00 0.00 C ATOM 628 C THR 39 2.310 0.095 -7.214 1.00 0.00 C ATOM 629 O THR 39 3.276 0.137 -7.977 1.00 0.00 O ATOM 630 CB THR 39 0.268 0.677 -8.540 1.00 0.00 C ATOM 631 OG1 THR 39 -0.838 1.583 -8.644 1.00 0.00 O ATOM 632 CG2 THR 39 -0.257 -0.738 -8.348 1.00 0.00 C ATOM 640 N LEU 40 2.200 -0.795 -6.234 1.00 0.00 N ATOM 641 CA LEU 40 3.201 -1.834 -6.026 1.00 0.00 C ATOM 642 C LEU 40 2.606 -3.221 -6.237 1.00 0.00 C ATOM 643 O LEU 40 1.560 -3.550 -5.678 1.00 0.00 O ATOM 644 CB LEU 40 3.785 -1.731 -4.612 1.00 0.00 C ATOM 645 CG LEU 40 4.809 -2.810 -4.236 1.00 0.00 C ATOM 646 CD1 LEU 40 6.055 -2.651 -5.098 1.00 0.00 C ATOM 647 CD2 LEU 40 5.149 -2.694 -2.758 1.00 0.00 C ATOM 659 N CYS 41 3.279 -4.030 -7.047 1.00 0.00 N ATOM 660 CA CYS 41 2.874 -5.415 -7.258 1.00 0.00 C ATOM 661 C CYS 41 4.077 -6.305 -7.537 1.00 0.00 C ATOM 662 O CYS 41 4.759 -6.694 -6.630 1.00 0.00 O ATOM 663 OXT CYS 41 4.344 -6.618 -8.665 1.00 0.00 O ATOM 664 CB CYS 41 1.889 -5.516 -8.424 1.00 0.00 C ATOM 665 SG CYS 41 1.262 -7.186 -8.718 1.00 0.00 S TER END