####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS402_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS402_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.03 1.03 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.03 1.03 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 2 - 41 0.86 1.04 LCS_AVERAGE: 97.14 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 33 41 41 3 3 3 4 19 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 40 41 41 4 28 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 40 41 41 14 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 40 41 41 6 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 40 41 41 6 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 40 41 41 5 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 40 41 41 3 22 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 40 41 41 4 15 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 40 41 41 7 31 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 40 41 41 7 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 40 41 41 17 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 40 41 41 7 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 40 41 41 13 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 40 41 41 3 23 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 40 41 41 3 11 34 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 40 41 41 16 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 40 41 41 3 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 40 41 41 19 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 40 41 41 5 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 99.05 ( 97.14 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 53.66 78.05 92.68 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.54 0.74 0.86 0.86 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 GDT RMS_ALL_AT 1.20 1.16 1.07 1.04 1.04 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.668 0 0.120 0.659 6.467 10.000 6.970 6.467 LGA Q 2 Q 2 0.936 0 0.225 1.189 5.835 81.818 46.869 5.835 LGA E 3 E 3 0.337 0 0.041 1.408 6.417 100.000 58.788 5.725 LGA T 4 T 4 0.344 0 0.013 1.120 2.428 95.455 79.740 2.351 LGA R 5 R 5 0.658 0 0.028 0.333 2.219 81.818 69.256 2.219 LGA K 6 K 6 0.646 0 0.034 1.137 4.512 81.818 53.131 4.475 LGA K 7 K 7 0.547 0 0.016 0.649 2.264 90.909 70.707 1.521 LGA C 8 C 8 0.498 0 0.036 0.759 2.719 90.909 78.788 2.719 LGA T 9 T 9 0.820 0 0.014 0.108 1.414 81.818 74.805 1.127 LGA E 10 E 10 0.927 0 0.022 0.435 1.873 81.818 67.879 1.708 LGA M 11 M 11 0.577 0 0.040 0.100 0.922 86.364 84.091 0.900 LGA K 12 K 12 0.188 0 0.027 0.664 2.061 100.000 84.242 2.050 LGA K 13 K 13 0.495 0 0.053 0.588 1.650 100.000 82.828 1.500 LGA K 14 K 14 0.553 0 0.114 0.599 2.658 81.818 75.758 2.658 LGA F 15 F 15 0.534 0 0.065 0.361 2.673 81.818 64.628 2.331 LGA K 16 K 16 1.218 0 0.051 1.228 5.216 73.636 52.323 5.216 LGA N 17 N 17 0.357 0 0.228 0.489 1.640 90.909 80.455 1.013 LGA C 18 C 18 0.872 0 0.032 0.057 0.963 81.818 81.818 0.963 LGA E 19 E 19 0.981 0 0.199 0.487 2.778 81.818 65.253 1.649 LGA V 20 V 20 1.134 0 0.069 0.084 1.274 65.455 67.792 0.993 LGA R 21 R 21 1.092 0 0.072 1.156 4.865 73.636 41.157 4.865 LGA C 22 C 22 1.372 0 0.155 0.922 4.878 61.818 50.000 4.878 LGA D 23 D 23 1.673 0 0.333 1.166 4.146 42.727 35.227 2.798 LGA E 24 E 24 1.014 0 0.168 0.543 2.488 65.909 54.949 2.407 LGA S 25 S 25 0.684 0 0.091 0.671 2.606 81.818 72.727 2.606 LGA N 26 N 26 0.445 0 0.087 1.182 5.275 100.000 65.909 5.275 LGA H 27 H 27 0.764 0 0.070 0.308 1.905 81.818 72.364 1.472 LGA C 28 C 28 0.693 0 0.140 0.190 1.448 77.727 79.091 0.795 LGA V 29 V 29 0.538 0 0.044 0.079 1.271 90.909 84.675 0.999 LGA E 30 E 30 0.805 0 0.095 0.249 2.446 86.364 66.869 2.446 LGA V 31 V 31 0.409 0 0.116 0.133 0.507 95.455 97.403 0.355 LGA R 32 R 32 0.734 0 0.092 1.047 6.655 81.818 52.893 6.655 LGA C 33 C 33 1.000 0 0.468 0.557 2.901 60.000 61.818 1.387 LGA S 34 S 34 1.098 0 0.148 0.158 2.122 59.091 61.212 1.128 LGA D 35 D 35 2.027 0 0.114 0.654 3.670 51.364 35.000 3.395 LGA T 36 T 36 0.992 0 0.272 1.121 4.013 82.273 64.935 4.013 LGA K 37 K 37 0.438 0 0.074 1.216 3.798 86.818 67.273 3.798 LGA Y 38 Y 38 0.937 0 0.028 1.357 4.889 86.364 56.515 4.889 LGA T 39 T 39 0.475 0 0.102 0.112 1.349 91.364 84.935 0.895 LGA L 40 L 40 0.423 0 0.149 0.414 1.765 95.455 87.045 1.765 LGA C 41 C 41 1.145 0 0.107 0.205 1.575 69.545 65.714 1.575 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.032 1.136 1.919 79.568 65.947 39.557 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.03 93.902 97.390 3.622 LGA_LOCAL RMSD: 1.032 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.032 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.032 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.698682 * X + 0.222194 * Y + -0.680054 * Z + -3.223651 Y_new = -0.659329 * X + 0.568965 * Y + -0.491492 * Z + -11.223876 Z_new = 0.277720 * X + 0.791776 * Y + 0.544025 * Z + -1.331255 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.756428 -0.281420 0.968785 [DEG: -43.3401 -16.1242 55.5073 ] ZXZ: -0.944981 0.995570 0.337348 [DEG: -54.1434 57.0420 19.3286 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS402_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS402_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.03 97.390 1.03 REMARK ---------------------------------------------------------- MOLECULE T0955TS402_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 -3.224 -11.224 -1.331 1.00 0.00 N ATOM 2 CA SER 1 -2.205 -12.185 -0.926 1.00 0.00 C ATOM 3 C SER 1 -1.504 -11.741 0.351 1.00 0.00 C ATOM 4 O SER 1 -1.585 -10.576 0.742 1.00 0.00 O ATOM 5 CB SER 1 -1.187 -12.365 -2.035 1.00 0.00 C ATOM 6 OG SER 1 -0.361 -11.239 -2.146 1.00 0.00 O ATOM 14 N GLN 2 -0.817 -12.675 0.999 1.00 0.00 N ATOM 15 CA GLN 2 -0.022 -12.360 2.180 1.00 0.00 C ATOM 16 C GLN 2 1.087 -11.369 1.849 1.00 0.00 C ATOM 17 O GLN 2 1.400 -10.484 2.644 1.00 0.00 O ATOM 18 CB GLN 2 0.578 -13.635 2.777 1.00 0.00 C ATOM 19 CG GLN 2 -0.441 -14.559 3.425 1.00 0.00 C ATOM 20 CD GLN 2 0.185 -15.841 3.938 1.00 0.00 C ATOM 21 OE1 GLN 2 1.219 -16.288 3.436 1.00 0.00 O ATOM 22 NE2 GLN 2 -0.441 -16.443 4.943 1.00 0.00 N ATOM 31 N GLU 3 1.680 -11.525 0.670 1.00 0.00 N ATOM 32 CA GLU 3 2.738 -10.628 0.220 1.00 0.00 C ATOM 33 C GLU 3 2.210 -9.212 0.018 1.00 0.00 C ATOM 34 O GLU 3 2.889 -8.236 0.336 1.00 0.00 O ATOM 35 CB GLU 3 3.356 -11.142 -1.082 1.00 0.00 C ATOM 36 CG GLU 3 4.129 -12.446 -0.938 1.00 0.00 C ATOM 37 CD GLU 3 5.341 -12.313 -0.057 1.00 0.00 C ATOM 38 OE1 GLU 3 6.113 -11.411 -0.275 1.00 0.00 O ATOM 39 OE2 GLU 3 5.494 -13.115 0.834 1.00 0.00 O ATOM 46 N THR 4 0.997 -9.109 -0.513 1.00 0.00 N ATOM 47 CA THR 4 0.356 -7.815 -0.712 1.00 0.00 C ATOM 48 C THR 4 0.211 -7.064 0.605 1.00 0.00 C ATOM 49 O THR 4 0.520 -5.875 0.691 1.00 0.00 O ATOM 50 CB THR 4 -1.026 -7.976 -1.372 1.00 0.00 C ATOM 51 OG1 THR 4 -0.884 -8.662 -2.622 1.00 0.00 O ATOM 52 CG2 THR 4 -1.663 -6.616 -1.613 1.00 0.00 C ATOM 60 N ARG 5 -0.263 -7.763 1.630 1.00 0.00 N ATOM 61 CA ARG 5 -0.479 -7.156 2.939 1.00 0.00 C ATOM 62 C ARG 5 0.832 -6.664 3.538 1.00 0.00 C ATOM 63 O ARG 5 0.889 -5.584 4.128 1.00 0.00 O ATOM 64 CB ARG 5 -1.126 -8.152 3.890 1.00 0.00 C ATOM 65 CG ARG 5 -2.584 -8.466 3.593 1.00 0.00 C ATOM 66 CD ARG 5 -3.133 -9.468 4.540 1.00 0.00 C ATOM 67 NE ARG 5 -4.551 -9.704 4.318 1.00 0.00 N ATOM 68 CZ ARG 5 -5.295 -10.594 5.004 1.00 0.00 C ATOM 69 NH1 ARG 5 -4.744 -11.323 5.949 1.00 0.00 N ATOM 70 NH2 ARG 5 -6.580 -10.735 4.725 1.00 0.00 N ATOM 84 N LYS 6 1.884 -7.461 3.385 1.00 0.00 N ATOM 85 CA LYS 6 3.203 -7.092 3.885 1.00 0.00 C ATOM 86 C LYS 6 3.740 -5.861 3.168 1.00 0.00 C ATOM 87 O LYS 6 4.328 -4.976 3.789 1.00 0.00 O ATOM 88 CB LYS 6 4.180 -8.259 3.729 1.00 0.00 C ATOM 89 CG LYS 6 3.948 -9.408 4.701 1.00 0.00 C ATOM 90 CD LYS 6 5.102 -10.399 4.671 1.00 0.00 C ATOM 91 CE LYS 6 5.114 -11.197 3.376 1.00 0.00 C ATOM 92 NZ LYS 6 6.177 -12.239 3.374 1.00 0.00 N ATOM 106 N LYS 7 3.534 -5.809 1.856 1.00 0.00 N ATOM 107 CA LYS 7 3.992 -4.681 1.052 1.00 0.00 C ATOM 108 C LYS 7 3.186 -3.425 1.356 1.00 0.00 C ATOM 109 O LYS 7 3.701 -2.310 1.266 1.00 0.00 O ATOM 110 CB LYS 7 3.905 -5.016 -0.437 1.00 0.00 C ATOM 111 CG LYS 7 4.935 -6.030 -0.917 1.00 0.00 C ATOM 112 CD LYS 7 4.802 -6.290 -2.409 1.00 0.00 C ATOM 113 CE LYS 7 5.754 -7.385 -2.868 1.00 0.00 C ATOM 114 NZ LYS 7 5.713 -7.575 -4.343 1.00 0.00 N ATOM 128 N CYS 8 1.921 -3.612 1.715 1.00 0.00 N ATOM 129 CA CYS 8 1.087 -2.512 2.184 1.00 0.00 C ATOM 130 C CYS 8 1.669 -1.876 3.440 1.00 0.00 C ATOM 131 O CYS 8 1.699 -0.652 3.571 1.00 0.00 O ATOM 132 CB CYS 8 -0.332 -2.999 2.477 1.00 0.00 C ATOM 133 SG CYS 8 -1.277 -3.448 1.002 1.00 0.00 S ATOM 139 N THR 9 2.131 -2.714 4.362 1.00 0.00 N ATOM 140 CA THR 9 2.770 -2.235 5.581 1.00 0.00 C ATOM 141 C THR 9 3.996 -1.388 5.265 1.00 0.00 C ATOM 142 O THR 9 4.198 -0.326 5.856 1.00 0.00 O ATOM 143 CB THR 9 3.174 -3.408 6.494 1.00 0.00 C ATOM 144 OG1 THR 9 2.002 -4.131 6.894 1.00 0.00 O ATOM 145 CG2 THR 9 3.898 -2.898 7.730 1.00 0.00 C ATOM 153 N GLU 10 4.812 -1.862 4.330 1.00 0.00 N ATOM 154 CA GLU 10 5.973 -1.109 3.873 1.00 0.00 C ATOM 155 C GLU 10 5.576 0.284 3.402 1.00 0.00 C ATOM 156 O GLU 10 6.202 1.277 3.771 1.00 0.00 O ATOM 157 CB GLU 10 6.683 -1.857 2.743 1.00 0.00 C ATOM 158 CG GLU 10 7.924 -1.157 2.207 1.00 0.00 C ATOM 159 CD GLU 10 8.521 -1.856 1.017 1.00 0.00 C ATOM 160 OE1 GLU 10 8.166 -2.983 0.773 1.00 0.00 O ATOM 161 OE2 GLU 10 9.335 -1.259 0.351 1.00 0.00 O ATOM 168 N MET 11 4.531 0.350 2.582 1.00 0.00 N ATOM 169 CA MET 11 4.068 1.619 2.034 1.00 0.00 C ATOM 170 C MET 11 3.546 2.536 3.133 1.00 0.00 C ATOM 171 O MET 11 3.725 3.753 3.076 1.00 0.00 O ATOM 172 CB MET 11 2.986 1.376 0.984 1.00 0.00 C ATOM 173 CG MET 11 3.480 0.694 -0.283 1.00 0.00 C ATOM 174 SD MET 11 4.734 1.658 -1.149 1.00 0.00 S ATOM 175 CE MET 11 6.233 0.933 -0.491 1.00 0.00 C ATOM 185 N LYS 12 2.900 1.946 4.133 1.00 0.00 N ATOM 186 CA LYS 12 2.380 2.705 5.264 1.00 0.00 C ATOM 187 C LYS 12 3.509 3.320 6.080 1.00 0.00 C ATOM 188 O LYS 12 3.390 4.440 6.578 1.00 0.00 O ATOM 189 CB LYS 12 1.513 1.814 6.154 1.00 0.00 C ATOM 190 CG LYS 12 0.160 1.452 5.553 1.00 0.00 C ATOM 191 CD LYS 12 -0.620 0.523 6.472 1.00 0.00 C ATOM 192 CE LYS 12 -1.956 0.131 5.858 1.00 0.00 C ATOM 193 NZ LYS 12 -2.728 -0.784 6.742 1.00 0.00 N ATOM 207 N LYS 13 4.605 2.582 6.213 1.00 0.00 N ATOM 208 CA LYS 13 5.761 3.054 6.968 1.00 0.00 C ATOM 209 C LYS 13 6.499 4.153 6.214 1.00 0.00 C ATOM 210 O LYS 13 7.014 5.095 6.816 1.00 0.00 O ATOM 211 CB LYS 13 6.711 1.895 7.274 1.00 0.00 C ATOM 212 CG LYS 13 6.197 0.921 8.324 1.00 0.00 C ATOM 213 CD LYS 13 7.195 -0.200 8.573 1.00 0.00 C ATOM 214 CE LYS 13 6.735 -1.112 9.702 1.00 0.00 C ATOM 215 NZ LYS 13 7.678 -2.241 9.924 1.00 0.00 N ATOM 229 N LYS 14 6.548 4.026 4.892 1.00 0.00 N ATOM 230 CA LYS 14 7.266 4.981 4.056 1.00 0.00 C ATOM 231 C LYS 14 6.394 6.185 3.723 1.00 0.00 C ATOM 232 O LYS 14 6.766 7.327 3.994 1.00 0.00 O ATOM 233 CB LYS 14 7.749 4.310 2.769 1.00 0.00 C ATOM 234 CG LYS 14 8.900 3.333 2.964 1.00 0.00 C ATOM 235 CD LYS 14 9.280 2.657 1.655 1.00 0.00 C ATOM 236 CE LYS 14 10.566 1.857 1.795 1.00 0.00 C ATOM 237 NZ LYS 14 10.857 1.053 0.578 1.00 0.00 N ATOM 251 N PHE 15 5.231 5.923 3.135 1.00 0.00 N ATOM 252 CA PHE 15 4.309 6.987 2.756 1.00 0.00 C ATOM 253 C PHE 15 3.377 7.343 3.907 1.00 0.00 C ATOM 254 O PHE 15 2.166 7.133 3.827 1.00 0.00 O ATOM 255 CB PHE 15 3.485 6.568 1.537 1.00 0.00 C ATOM 256 CG PHE 15 4.287 6.456 0.272 1.00 0.00 C ATOM 257 CD1 PHE 15 4.791 5.231 -0.140 1.00 0.00 C ATOM 258 CD2 PHE 15 4.540 7.574 -0.508 1.00 0.00 C ATOM 259 CE1 PHE 15 5.530 5.127 -1.303 1.00 0.00 C ATOM 260 CE2 PHE 15 5.277 7.472 -1.671 1.00 0.00 C ATOM 261 CZ PHE 15 5.773 6.247 -2.069 1.00 0.00 C ATOM 271 N LYS 16 3.949 7.884 4.978 1.00 0.00 N ATOM 272 CA LYS 16 3.209 8.095 6.217 1.00 0.00 C ATOM 273 C LYS 16 2.034 9.042 6.003 1.00 0.00 C ATOM 274 O LYS 16 1.027 8.965 6.706 1.00 0.00 O ATOM 275 CB LYS 16 4.133 8.640 7.306 1.00 0.00 C ATOM 276 CG LYS 16 5.102 7.616 7.881 1.00 0.00 C ATOM 277 CD LYS 16 5.908 8.201 9.030 1.00 0.00 C ATOM 278 CE LYS 16 6.649 7.115 9.797 1.00 0.00 C ATOM 279 NZ LYS 16 7.745 6.513 8.988 1.00 0.00 N ATOM 293 N ASN 17 2.171 9.934 5.028 1.00 0.00 N ATOM 294 CA ASN 17 1.202 11.006 4.828 1.00 0.00 C ATOM 295 C ASN 17 0.243 10.675 3.692 1.00 0.00 C ATOM 296 O ASN 17 -0.429 11.559 3.158 1.00 0.00 O ATOM 297 CB ASN 17 1.908 12.323 4.568 1.00 0.00 C ATOM 298 CG ASN 17 2.671 12.817 5.765 1.00 0.00 C ATOM 299 OD1 ASN 17 2.206 12.697 6.905 1.00 0.00 O ATOM 300 ND2 ASN 17 3.832 13.371 5.530 1.00 0.00 N ATOM 307 N CYS 18 0.183 9.400 3.325 1.00 0.00 N ATOM 308 CA CYS 18 -0.658 8.959 2.220 1.00 0.00 C ATOM 309 C CYS 18 -1.587 7.831 2.649 1.00 0.00 C ATOM 310 O CYS 18 -1.380 7.206 3.691 1.00 0.00 O ATOM 311 CB CYS 18 0.201 8.486 1.045 1.00 0.00 C ATOM 312 SG CYS 18 1.478 9.664 0.543 1.00 0.00 S ATOM 318 N GLU 19 -2.610 7.574 1.842 1.00 0.00 N ATOM 319 CA GLU 19 -3.536 6.479 2.104 1.00 0.00 C ATOM 320 C GLU 19 -3.103 5.207 1.389 1.00 0.00 C ATOM 321 O GLU 19 -2.854 5.215 0.183 1.00 0.00 O ATOM 322 CB GLU 19 -4.952 6.863 1.670 1.00 0.00 C ATOM 323 CG GLU 19 -6.006 5.802 1.955 1.00 0.00 C ATOM 324 CD GLU 19 -7.385 6.216 1.521 1.00 0.00 C ATOM 325 OE1 GLU 19 -7.514 7.266 0.939 1.00 0.00 O ATOM 326 OE2 GLU 19 -8.310 5.480 1.771 1.00 0.00 O ATOM 333 N VAL 20 -3.013 4.113 2.138 1.00 0.00 N ATOM 334 CA VAL 20 -2.596 2.833 1.578 1.00 0.00 C ATOM 335 C VAL 20 -3.687 1.782 1.733 1.00 0.00 C ATOM 336 O VAL 20 -4.221 1.584 2.824 1.00 0.00 O ATOM 337 CB VAL 20 -1.311 2.340 2.270 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.863 1.012 1.678 1.00 0.00 C ATOM 339 CG2 VAL 20 -0.216 3.387 2.136 1.00 0.00 C ATOM 349 N ARG 21 -4.015 1.110 0.635 1.00 0.00 N ATOM 350 CA ARG 21 -5.070 0.104 0.639 1.00 0.00 C ATOM 351 C ARG 21 -4.557 -1.233 0.118 1.00 0.00 C ATOM 352 O ARG 21 -3.698 -1.280 -0.762 1.00 0.00 O ATOM 353 CB ARG 21 -6.246 0.558 -0.212 1.00 0.00 C ATOM 354 CG ARG 21 -6.966 1.796 0.300 1.00 0.00 C ATOM 355 CD ARG 21 -8.140 2.137 -0.542 1.00 0.00 C ATOM 356 NE ARG 21 -8.812 3.340 -0.076 1.00 0.00 N ATOM 357 CZ ARG 21 -9.950 3.833 -0.601 1.00 0.00 C ATOM 358 NH1 ARG 21 -10.530 3.217 -1.608 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.483 4.935 -0.106 1.00 0.00 N ATOM 373 N CYS 22 -5.089 -2.319 0.668 1.00 0.00 N ATOM 374 CA CYS 22 -4.773 -3.657 0.182 1.00 0.00 C ATOM 375 C CYS 22 -5.869 -4.184 -0.734 1.00 0.00 C ATOM 376 O CYS 22 -6.996 -4.420 -0.299 1.00 0.00 O ATOM 377 CB CYS 22 -4.586 -4.624 1.352 1.00 0.00 C ATOM 378 SG CYS 22 -4.164 -6.311 0.856 1.00 0.00 S ATOM 384 N ASP 23 -5.532 -4.366 -2.007 1.00 0.00 N ATOM 385 CA ASP 23 -6.483 -4.882 -2.985 1.00 0.00 C ATOM 386 C ASP 23 -6.391 -6.398 -3.097 1.00 0.00 C ATOM 387 O ASP 23 -5.536 -6.927 -3.809 1.00 0.00 O ATOM 388 CB ASP 23 -6.239 -4.247 -4.356 1.00 0.00 C ATOM 389 CG ASP 23 -7.177 -4.779 -5.432 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.752 -5.822 -5.227 1.00 0.00 O ATOM 391 OD2 ASP 23 -7.309 -4.138 -6.446 1.00 0.00 O ATOM 396 N GLU 24 -7.275 -7.094 -2.391 1.00 0.00 N ATOM 397 CA GLU 24 -7.187 -8.543 -2.266 1.00 0.00 C ATOM 398 C GLU 24 -7.904 -9.240 -3.416 1.00 0.00 C ATOM 399 O GLU 24 -8.007 -10.466 -3.445 1.00 0.00 O ATOM 400 CB GLU 24 -7.779 -9.002 -0.932 1.00 0.00 C ATOM 401 CG GLU 24 -7.000 -8.541 0.293 1.00 0.00 C ATOM 402 CD GLU 24 -7.534 -9.115 1.574 1.00 0.00 C ATOM 403 OE1 GLU 24 -8.528 -9.799 1.529 1.00 0.00 O ATOM 404 OE2 GLU 24 -6.946 -8.869 2.602 1.00 0.00 O ATOM 411 N SER 25 -8.397 -8.450 -4.364 1.00 0.00 N ATOM 412 CA SER 25 -9.035 -8.992 -5.558 1.00 0.00 C ATOM 413 C SER 25 -8.077 -8.995 -6.741 1.00 0.00 C ATOM 414 O SER 25 -8.200 -9.818 -7.649 1.00 0.00 O ATOM 415 CB SER 25 -10.273 -8.185 -5.900 1.00 0.00 C ATOM 416 OG SER 25 -9.932 -6.884 -6.291 1.00 0.00 O ATOM 422 N ASN 26 -7.123 -8.070 -6.726 1.00 0.00 N ATOM 423 CA ASN 26 -6.052 -8.059 -7.716 1.00 0.00 C ATOM 424 C ASN 26 -4.700 -8.327 -7.068 1.00 0.00 C ATOM 425 O ASN 26 -3.679 -8.406 -7.751 1.00 0.00 O ATOM 426 CB ASN 26 -6.033 -6.740 -8.467 1.00 0.00 C ATOM 427 CG ASN 26 -7.270 -6.528 -9.294 1.00 0.00 C ATOM 428 OD1 ASN 26 -7.445 -7.155 -10.345 1.00 0.00 O ATOM 429 ND2 ASN 26 -8.134 -5.655 -8.840 1.00 0.00 N ATOM 436 N HIS 27 -4.700 -8.465 -5.746 1.00 0.00 N ATOM 437 CA HIS 27 -3.474 -8.732 -5.004 1.00 0.00 C ATOM 438 C HIS 27 -2.444 -7.632 -5.230 1.00 0.00 C ATOM 439 O HIS 27 -1.262 -7.909 -5.437 1.00 0.00 O ATOM 440 CB HIS 27 -2.881 -10.086 -5.408 1.00 0.00 C ATOM 441 CG HIS 27 -3.840 -11.227 -5.274 1.00 0.00 C ATOM 442 ND1 HIS 27 -4.236 -11.726 -4.050 1.00 0.00 N ATOM 443 CD2 HIS 27 -4.483 -11.966 -6.208 1.00 0.00 C ATOM 444 CE1 HIS 27 -5.081 -12.724 -4.238 1.00 0.00 C ATOM 445 NE2 HIS 27 -5.248 -12.890 -5.538 1.00 0.00 N ATOM 453 N CYS 28 -2.898 -6.385 -5.187 1.00 0.00 N ATOM 454 CA CYS 28 -2.032 -5.244 -5.457 1.00 0.00 C ATOM 455 C CYS 28 -2.029 -4.266 -4.288 1.00 0.00 C ATOM 456 O CYS 28 -2.935 -4.276 -3.456 1.00 0.00 O ATOM 457 CB CYS 28 -2.480 -4.514 -6.724 1.00 0.00 C ATOM 458 SG CYS 28 -2.446 -5.537 -8.215 1.00 0.00 S ATOM 464 N VAL 29 -1.004 -3.421 -4.233 1.00 0.00 N ATOM 465 CA VAL 29 -0.929 -2.374 -3.222 1.00 0.00 C ATOM 466 C VAL 29 -1.207 -1.004 -3.827 1.00 0.00 C ATOM 467 O VAL 29 -0.556 -0.595 -4.788 1.00 0.00 O ATOM 468 CB VAL 29 0.462 -2.367 -2.562 1.00 0.00 C ATOM 469 CG1 VAL 29 0.525 -1.317 -1.462 1.00 0.00 C ATOM 470 CG2 VAL 29 0.780 -3.748 -2.008 1.00 0.00 C ATOM 480 N GLU 30 -2.179 -0.298 -3.258 1.00 0.00 N ATOM 481 CA GLU 30 -2.572 1.012 -3.765 1.00 0.00 C ATOM 482 C GLU 30 -2.169 2.119 -2.799 1.00 0.00 C ATOM 483 O GLU 30 -2.546 2.100 -1.626 1.00 0.00 O ATOM 484 CB GLU 30 -4.081 1.059 -4.010 1.00 0.00 C ATOM 485 CG GLU 30 -4.590 2.388 -4.550 1.00 0.00 C ATOM 486 CD GLU 30 -6.065 2.376 -4.838 1.00 0.00 C ATOM 487 OE1 GLU 30 -6.829 2.205 -3.919 1.00 0.00 O ATOM 488 OE2 GLU 30 -6.429 2.538 -5.979 1.00 0.00 O ATOM 495 N VAL 31 -1.404 3.084 -3.297 1.00 0.00 N ATOM 496 CA VAL 31 -0.967 4.213 -2.485 1.00 0.00 C ATOM 497 C VAL 31 -1.421 5.535 -3.091 1.00 0.00 C ATOM 498 O VAL 31 -0.981 5.914 -4.177 1.00 0.00 O ATOM 499 CB VAL 31 0.566 4.213 -2.349 1.00 0.00 C ATOM 500 CG1 VAL 31 1.022 5.360 -1.458 1.00 0.00 C ATOM 501 CG2 VAL 31 1.037 2.877 -1.793 1.00 0.00 C ATOM 511 N ARG 32 -2.303 6.234 -2.384 1.00 0.00 N ATOM 512 CA ARG 32 -2.862 7.485 -2.878 1.00 0.00 C ATOM 513 C ARG 32 -2.187 8.686 -2.224 1.00 0.00 C ATOM 514 O ARG 32 -2.374 8.944 -1.035 1.00 0.00 O ATOM 515 CB ARG 32 -4.359 7.544 -2.614 1.00 0.00 C ATOM 516 CG ARG 32 -5.054 8.787 -3.147 1.00 0.00 C ATOM 517 CD ARG 32 -6.510 8.772 -2.852 1.00 0.00 C ATOM 518 NE ARG 32 -6.776 8.927 -1.430 1.00 0.00 N ATOM 519 CZ ARG 32 -6.903 10.111 -0.800 1.00 0.00 C ATOM 520 NH1 ARG 32 -6.786 11.232 -1.478 1.00 0.00 N ATOM 521 NH2 ARG 32 -7.145 10.146 0.498 1.00 0.00 N ATOM 535 N CYS 33 -1.403 9.417 -3.010 1.00 0.00 N ATOM 536 CA CYS 33 -0.643 10.549 -2.493 1.00 0.00 C ATOM 537 C CYS 33 -1.305 11.871 -2.860 1.00 0.00 C ATOM 538 O CYS 33 -2.193 11.915 -3.711 1.00 0.00 O ATOM 539 CB CYS 33 0.786 10.530 -3.038 1.00 0.00 C ATOM 540 SG CYS 33 1.651 8.961 -2.790 1.00 0.00 S ATOM 546 N SER 34 -0.866 12.945 -2.213 1.00 0.00 N ATOM 547 CA SER 34 -1.343 14.284 -2.542 1.00 0.00 C ATOM 548 C SER 34 -0.965 14.668 -3.968 1.00 0.00 C ATOM 549 O SER 34 -1.749 15.297 -4.679 1.00 0.00 O ATOM 550 CB SER 34 -0.769 15.295 -1.568 1.00 0.00 C ATOM 551 OG SER 34 -1.260 15.079 -0.274 1.00 0.00 O ATOM 557 N ASP 35 0.239 14.287 -4.379 1.00 0.00 N ATOM 558 CA ASP 35 0.758 14.668 -5.687 1.00 0.00 C ATOM 559 C ASP 35 0.385 13.642 -6.749 1.00 0.00 C ATOM 560 O ASP 35 -0.176 13.986 -7.789 1.00 0.00 O ATOM 561 CB ASP 35 2.279 14.826 -5.636 1.00 0.00 C ATOM 562 CG ASP 35 2.980 13.623 -5.019 1.00 0.00 C ATOM 563 OD1 ASP 35 2.301 12.754 -4.526 1.00 0.00 O ATOM 564 OD2 ASP 35 4.187 13.586 -5.046 1.00 0.00 O ATOM 569 N THR 36 0.697 12.378 -6.479 1.00 0.00 N ATOM 570 CA THR 36 0.582 11.329 -7.485 1.00 0.00 C ATOM 571 C THR 36 0.008 10.052 -6.887 1.00 0.00 C ATOM 572 O THR 36 -0.560 10.068 -5.795 1.00 0.00 O ATOM 573 CB THR 36 1.948 11.029 -8.130 1.00 0.00 C ATOM 574 OG1 THR 36 1.768 10.154 -9.251 1.00 0.00 O ATOM 575 CG2 THR 36 2.881 10.373 -7.125 1.00 0.00 C ATOM 583 N LYS 37 0.158 8.946 -7.608 1.00 0.00 N ATOM 584 CA LYS 37 -0.363 7.661 -7.158 1.00 0.00 C ATOM 585 C LYS 37 0.570 6.522 -7.548 1.00 0.00 C ATOM 586 O LYS 37 1.111 6.500 -8.653 1.00 0.00 O ATOM 587 CB LYS 37 -1.759 7.419 -7.732 1.00 0.00 C ATOM 588 CG LYS 37 -2.431 6.145 -7.237 1.00 0.00 C ATOM 589 CD LYS 37 -3.852 6.026 -7.768 1.00 0.00 C ATOM 590 CE LYS 37 -4.551 4.796 -7.210 1.00 0.00 C ATOM 591 NZ LYS 37 -5.937 4.657 -7.735 1.00 0.00 N ATOM 605 N TYR 38 0.755 5.575 -6.634 1.00 0.00 N ATOM 606 CA TYR 38 1.620 4.429 -6.882 1.00 0.00 C ATOM 607 C TYR 38 0.839 3.123 -6.807 1.00 0.00 C ATOM 608 O TYR 38 -0.098 2.994 -6.019 1.00 0.00 O ATOM 609 CB TYR 38 2.783 4.409 -5.886 1.00 0.00 C ATOM 610 CG TYR 38 3.649 5.647 -5.936 1.00 0.00 C ATOM 611 CD1 TYR 38 3.372 6.723 -5.104 1.00 0.00 C ATOM 612 CD2 TYR 38 4.722 5.709 -6.813 1.00 0.00 C ATOM 613 CE1 TYR 38 4.164 7.853 -5.150 1.00 0.00 C ATOM 614 CE2 TYR 38 5.514 6.839 -6.859 1.00 0.00 C ATOM 615 CZ TYR 38 5.238 7.909 -6.032 1.00 0.00 C ATOM 616 OH TYR 38 6.028 9.034 -6.077 1.00 0.00 O ATOM 626 N THR 39 1.230 2.157 -7.632 1.00 0.00 N ATOM 627 CA THR 39 0.738 0.792 -7.501 1.00 0.00 C ATOM 628 C THR 39 1.886 -0.208 -7.482 1.00 0.00 C ATOM 629 O THR 39 2.788 -0.149 -8.317 1.00 0.00 O ATOM 630 CB THR 39 -0.235 0.441 -8.642 1.00 0.00 C ATOM 631 OG1 THR 39 -1.347 1.345 -8.620 1.00 0.00 O ATOM 632 CG2 THR 39 -0.743 -0.985 -8.491 1.00 0.00 C ATOM 640 N LEU 40 1.848 -1.128 -6.523 1.00 0.00 N ATOM 641 CA LEU 40 2.878 -2.152 -6.402 1.00 0.00 C ATOM 642 C LEU 40 2.275 -3.549 -6.453 1.00 0.00 C ATOM 643 O LEU 40 1.174 -3.780 -5.952 1.00 0.00 O ATOM 644 CB LEU 40 3.654 -1.971 -5.091 1.00 0.00 C ATOM 645 CG LEU 40 4.195 -0.560 -4.828 1.00 0.00 C ATOM 646 CD1 LEU 40 3.114 0.284 -4.168 1.00 0.00 C ATOM 647 CD2 LEU 40 5.434 -0.647 -3.949 1.00 0.00 C ATOM 659 N CYS 41 3.002 -4.481 -7.061 1.00 0.00 N ATOM 660 CA CYS 41 2.579 -5.876 -7.106 1.00 0.00 C ATOM 661 C CYS 41 3.646 -6.792 -6.523 1.00 0.00 C ATOM 662 O CYS 41 3.750 -6.912 -5.333 1.00 0.00 O ATOM 663 OXT CYS 41 4.383 -7.396 -7.253 1.00 0.00 O ATOM 664 CB CYS 41 2.278 -6.301 -8.543 1.00 0.00 C ATOM 665 SG CYS 41 0.980 -5.329 -9.345 1.00 0.00 S TER END