####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS402_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS402_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.34 1.34 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.34 1.34 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 2 - 22 0.91 1.38 LCS_AVERAGE: 45.93 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 3 9 15 29 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 21 41 41 15 25 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 21 41 41 15 27 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 21 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 21 41 41 4 21 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 21 41 41 4 18 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 21 41 41 11 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 21 41 41 8 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 21 41 41 4 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 21 41 41 8 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 21 41 41 6 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 21 41 41 3 19 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 18 41 41 3 7 30 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 18 41 41 6 17 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 18 41 41 8 26 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 18 41 41 8 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 18 41 41 8 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 18 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 18 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 18 41 41 11 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 18 41 41 14 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 18 41 41 8 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 18 41 41 5 27 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 18 41 41 5 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 16 41 41 4 10 29 35 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 16 41 41 5 10 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 16 41 41 11 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 16 41 41 10 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 16 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 16 41 41 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 16 41 41 12 22 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 81.98 ( 45.93 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 28 35 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 36.59 68.29 85.37 92.68 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.24 0.68 0.87 1.01 1.14 1.14 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 GDT RMS_ALL_AT 1.58 1.39 1.37 1.35 1.35 1.35 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 1.34 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.496 0 0.127 0.657 6.761 4.091 3.030 6.334 LGA Q 2 Q 2 1.146 0 0.224 1.192 3.647 70.000 52.727 3.647 LGA E 3 E 3 1.036 0 0.023 1.479 6.471 73.636 41.212 6.045 LGA T 4 T 4 0.432 0 0.012 1.122 2.749 90.909 75.584 2.418 LGA R 5 R 5 0.465 0 0.020 0.356 2.957 95.455 70.909 2.475 LGA K 6 K 6 0.473 0 0.018 1.284 6.720 100.000 57.172 6.720 LGA K 7 K 7 0.564 0 0.019 0.660 2.461 86.364 65.859 1.764 LGA C 8 C 8 0.552 0 0.033 0.780 2.787 86.364 75.758 2.787 LGA T 9 T 9 0.706 0 0.014 0.110 1.069 81.818 79.481 0.955 LGA E 10 E 10 0.717 0 0.045 0.994 5.088 81.818 51.717 5.088 LGA M 11 M 11 0.616 0 0.012 0.852 2.892 81.818 75.000 2.892 LGA K 12 K 12 0.769 0 0.037 1.048 5.897 81.818 50.303 5.897 LGA K 13 K 13 0.732 0 0.030 0.607 1.488 81.818 76.364 1.320 LGA K 14 K 14 0.624 0 0.060 0.957 6.420 81.818 51.717 6.420 LGA F 15 F 15 1.319 0 0.205 0.236 2.625 65.909 48.595 2.625 LGA K 16 K 16 1.953 0 0.065 1.257 4.887 58.182 37.980 4.834 LGA N 17 N 17 0.526 0 0.200 0.471 2.289 86.364 70.682 1.751 LGA C 18 C 18 1.101 0 0.017 0.852 3.574 69.545 59.091 3.574 LGA E 19 E 19 1.228 0 0.176 0.450 2.854 73.636 55.556 2.043 LGA V 20 V 20 0.919 0 0.079 0.096 1.113 73.636 74.805 1.034 LGA R 21 R 21 1.085 0 0.092 1.172 5.246 73.636 40.331 5.246 LGA C 22 C 22 1.709 0 0.127 0.901 5.375 54.545 42.727 5.375 LGA D 23 D 23 2.268 0 0.325 1.149 4.497 28.636 25.455 2.937 LGA E 24 E 24 1.670 0 0.145 0.963 4.177 50.909 38.182 4.177 LGA S 25 S 25 1.479 0 0.039 0.085 2.144 61.818 56.061 2.144 LGA N 26 N 26 0.793 0 0.097 1.184 5.561 90.909 59.318 5.561 LGA H 27 H 27 0.586 0 0.068 0.293 2.078 81.818 68.000 1.581 LGA C 28 C 28 0.603 0 0.144 0.196 1.284 82.273 85.152 0.326 LGA V 29 V 29 0.802 0 0.038 0.068 1.644 86.364 75.325 1.302 LGA E 30 E 30 0.689 0 0.128 0.679 2.860 90.909 67.879 2.860 LGA V 31 V 31 0.730 0 0.142 0.168 1.135 81.818 79.481 1.135 LGA R 32 R 32 0.810 0 0.097 1.151 6.467 70.000 48.099 6.467 LGA C 33 C 33 1.094 0 0.541 0.608 3.663 55.909 59.091 1.132 LGA S 34 S 34 1.119 0 0.247 0.570 2.660 52.273 56.970 1.734 LGA D 35 D 35 2.807 0 0.203 0.980 7.136 35.909 19.318 7.021 LGA T 36 T 36 2.056 0 0.038 0.152 3.043 55.909 43.896 3.043 LGA K 37 K 37 0.887 0 0.109 1.520 5.791 77.727 54.141 5.791 LGA Y 38 Y 38 0.524 0 0.011 1.358 5.676 86.364 57.121 5.676 LGA T 39 T 39 0.893 0 0.095 0.107 2.066 77.727 64.416 1.577 LGA L 40 L 40 0.536 0 0.155 0.406 1.252 81.818 86.591 1.252 LGA C 41 C 41 1.561 0 0.107 0.202 2.243 54.545 49.351 2.243 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.336 1.428 2.359 72.118 57.328 29.357 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.34 90.244 95.582 2.856 LGA_LOCAL RMSD: 1.336 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.336 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.336 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.485787 * X + 0.221324 * Y + -0.845593 * Z + -3.619244 Y_new = -0.735200 * X + 0.626692 * Y + -0.258337 * Z + -10.576254 Z_new = 0.472750 * X + 0.747176 * Y + 0.467156 * Z + -1.448289 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.986898 -0.492409 1.012033 [DEG: -56.5451 -28.2129 57.9852 ] ZXZ: -1.274292 1.084725 0.564128 [DEG: -73.0116 62.1501 32.3222 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS402_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS402_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.34 95.582 1.34 REMARK ---------------------------------------------------------- MOLECULE T0955TS402_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -3.619 -10.576 -1.448 1.00 0.00 N ATOM 2 CA SER 1 -2.911 -11.648 -0.759 1.00 0.00 C ATOM 3 C SER 1 -2.329 -11.163 0.562 1.00 0.00 C ATOM 4 O SER 1 -2.241 -9.960 0.809 1.00 0.00 O ATOM 5 CB SER 1 -1.804 -12.193 -1.639 1.00 0.00 C ATOM 6 OG SER 1 -0.740 -11.285 -1.728 1.00 0.00 O ATOM 14 N GLN 2 -1.932 -12.107 1.410 1.00 0.00 N ATOM 15 CA GLN 2 -1.283 -11.777 2.673 1.00 0.00 C ATOM 16 C GLN 2 0.028 -11.035 2.442 1.00 0.00 C ATOM 17 O GLN 2 0.373 -10.119 3.188 1.00 0.00 O ATOM 18 CB GLN 2 -1.027 -13.046 3.492 1.00 0.00 C ATOM 19 CG GLN 2 -2.286 -13.695 4.041 1.00 0.00 C ATOM 20 CD GLN 2 -1.993 -14.984 4.786 1.00 0.00 C ATOM 21 OE1 GLN 2 -0.983 -15.647 4.535 1.00 0.00 O ATOM 22 NE2 GLN 2 -2.878 -15.347 5.709 1.00 0.00 N ATOM 31 N GLU 3 0.754 -11.436 1.404 1.00 0.00 N ATOM 32 CA GLU 3 2.019 -10.798 1.062 1.00 0.00 C ATOM 33 C GLU 3 1.802 -9.369 0.582 1.00 0.00 C ATOM 34 O GLU 3 2.620 -8.486 0.840 1.00 0.00 O ATOM 35 CB GLU 3 2.749 -11.604 -0.016 1.00 0.00 C ATOM 36 CG GLU 3 3.219 -12.979 0.438 1.00 0.00 C ATOM 37 CD GLU 3 4.160 -12.918 1.609 1.00 0.00 C ATOM 38 OE1 GLU 3 5.131 -12.205 1.530 1.00 0.00 O ATOM 39 OE2 GLU 3 3.907 -13.587 2.584 1.00 0.00 O ATOM 46 N THR 4 0.696 -9.148 -0.121 1.00 0.00 N ATOM 47 CA THR 4 0.309 -7.805 -0.537 1.00 0.00 C ATOM 48 C THR 4 0.067 -6.904 0.667 1.00 0.00 C ATOM 49 O THR 4 0.504 -5.752 0.690 1.00 0.00 O ATOM 50 CB THR 4 -0.953 -7.841 -1.418 1.00 0.00 C ATOM 51 OG1 THR 4 -0.717 -8.671 -2.563 1.00 0.00 O ATOM 52 CG2 THR 4 -1.321 -6.438 -1.880 1.00 0.00 C ATOM 60 N ARG 5 -0.629 -7.433 1.667 1.00 0.00 N ATOM 61 CA ARG 5 -0.906 -6.686 2.887 1.00 0.00 C ATOM 62 C ARG 5 0.383 -6.305 3.605 1.00 0.00 C ATOM 63 O ARG 5 0.502 -5.207 4.146 1.00 0.00 O ATOM 64 CB ARG 5 -1.783 -7.501 3.827 1.00 0.00 C ATOM 65 CG ARG 5 -3.213 -7.704 3.352 1.00 0.00 C ATOM 66 CD ARG 5 -4.002 -8.515 4.314 1.00 0.00 C ATOM 67 NE ARG 5 -5.336 -8.804 3.814 1.00 0.00 N ATOM 68 CZ ARG 5 -6.310 -9.397 4.531 1.00 0.00 C ATOM 69 NH1 ARG 5 -6.084 -9.758 5.775 1.00 0.00 N ATOM 70 NH2 ARG 5 -7.493 -9.617 3.984 1.00 0.00 N ATOM 84 N LYS 6 1.347 -7.219 3.604 1.00 0.00 N ATOM 85 CA LYS 6 2.653 -6.957 4.197 1.00 0.00 C ATOM 86 C LYS 6 3.342 -5.783 3.513 1.00 0.00 C ATOM 87 O LYS 6 3.900 -4.907 4.174 1.00 0.00 O ATOM 88 CB LYS 6 3.536 -8.203 4.119 1.00 0.00 C ATOM 89 CG LYS 6 3.108 -9.337 5.041 1.00 0.00 C ATOM 90 CD LYS 6 3.994 -10.560 4.862 1.00 0.00 C ATOM 91 CE LYS 6 3.465 -11.749 5.650 1.00 0.00 C ATOM 92 NZ LYS 6 4.251 -12.985 5.389 1.00 0.00 N ATOM 106 N LYS 7 3.299 -5.770 2.185 1.00 0.00 N ATOM 107 CA LYS 7 3.901 -4.691 1.410 1.00 0.00 C ATOM 108 C LYS 7 3.179 -3.372 1.649 1.00 0.00 C ATOM 109 O LYS 7 3.805 -2.313 1.701 1.00 0.00 O ATOM 110 CB LYS 7 3.891 -5.034 -0.081 1.00 0.00 C ATOM 111 CG LYS 7 4.849 -6.150 -0.477 1.00 0.00 C ATOM 112 CD LYS 7 4.856 -6.365 -1.983 1.00 0.00 C ATOM 113 CE LYS 7 5.766 -7.519 -2.374 1.00 0.00 C ATOM 114 NZ LYS 7 5.888 -7.656 -3.851 1.00 0.00 N ATOM 128 N CYS 8 1.861 -3.442 1.795 1.00 0.00 N ATOM 129 CA CYS 8 1.060 -2.261 2.095 1.00 0.00 C ATOM 130 C CYS 8 1.544 -1.576 3.366 1.00 0.00 C ATOM 131 O CYS 8 1.655 -0.351 3.418 1.00 0.00 O ATOM 132 CB CYS 8 -0.414 -2.637 2.254 1.00 0.00 C ATOM 133 SG CYS 8 -1.196 -3.220 0.731 1.00 0.00 S ATOM 139 N THR 9 1.830 -2.373 4.390 1.00 0.00 N ATOM 140 CA THR 9 2.328 -1.847 5.654 1.00 0.00 C ATOM 141 C THR 9 3.657 -1.126 5.466 1.00 0.00 C ATOM 142 O THR 9 3.869 -0.042 6.010 1.00 0.00 O ATOM 143 CB THR 9 2.493 -2.969 6.695 1.00 0.00 C ATOM 144 OG1 THR 9 1.216 -3.560 6.971 1.00 0.00 O ATOM 145 CG2 THR 9 3.080 -2.417 7.986 1.00 0.00 C ATOM 153 N GLU 10 4.549 -1.733 4.691 1.00 0.00 N ATOM 154 CA GLU 10 5.881 -1.181 4.479 1.00 0.00 C ATOM 155 C GLU 10 5.817 0.134 3.711 1.00 0.00 C ATOM 156 O GLU 10 6.607 1.046 3.956 1.00 0.00 O ATOM 157 CB GLU 10 6.760 -2.181 3.724 1.00 0.00 C ATOM 158 CG GLU 10 7.114 -3.431 4.517 1.00 0.00 C ATOM 159 CD GLU 10 7.835 -3.124 5.800 1.00 0.00 C ATOM 160 OE1 GLU 10 8.835 -2.450 5.750 1.00 0.00 O ATOM 161 OE2 GLU 10 7.386 -3.565 6.832 1.00 0.00 O ATOM 168 N MET 11 4.872 0.224 2.781 1.00 0.00 N ATOM 169 CA MET 11 4.658 1.451 2.024 1.00 0.00 C ATOM 170 C MET 11 4.079 2.549 2.907 1.00 0.00 C ATOM 171 O MET 11 4.319 3.735 2.679 1.00 0.00 O ATOM 172 CB MET 11 3.737 1.184 0.835 1.00 0.00 C ATOM 173 CG MET 11 4.366 0.350 -0.273 1.00 0.00 C ATOM 174 SD MET 11 5.977 0.978 -0.787 1.00 0.00 S ATOM 175 CE MET 11 5.515 2.556 -1.494 1.00 0.00 C ATOM 185 N LYS 12 3.315 2.147 3.918 1.00 0.00 N ATOM 186 CA LYS 12 2.826 3.080 4.926 1.00 0.00 C ATOM 187 C LYS 12 3.969 3.631 5.769 1.00 0.00 C ATOM 188 O LYS 12 3.985 4.813 6.113 1.00 0.00 O ATOM 189 CB LYS 12 1.789 2.403 5.824 1.00 0.00 C ATOM 190 CG LYS 12 1.159 3.322 6.861 1.00 0.00 C ATOM 191 CD LYS 12 0.213 4.321 6.213 1.00 0.00 C ATOM 192 CE LYS 12 -0.398 5.256 7.246 1.00 0.00 C ATOM 193 NZ LYS 12 -1.443 6.135 6.653 1.00 0.00 N ATOM 207 N LYS 13 4.924 2.767 6.097 1.00 0.00 N ATOM 208 CA LYS 13 6.116 3.186 6.824 1.00 0.00 C ATOM 209 C LYS 13 6.927 4.193 6.019 1.00 0.00 C ATOM 210 O LYS 13 7.441 5.169 6.564 1.00 0.00 O ATOM 211 CB LYS 13 6.982 1.974 7.174 1.00 0.00 C ATOM 212 CG LYS 13 6.383 1.059 8.234 1.00 0.00 C ATOM 213 CD LYS 13 7.265 -0.157 8.476 1.00 0.00 C ATOM 214 CE LYS 13 6.628 -1.114 9.472 1.00 0.00 C ATOM 215 NZ LYS 13 7.371 -2.401 9.561 1.00 0.00 N ATOM 229 N LYS 14 7.037 3.951 4.717 1.00 0.00 N ATOM 230 CA LYS 14 7.832 4.805 3.843 1.00 0.00 C ATOM 231 C LYS 14 7.217 6.193 3.721 1.00 0.00 C ATOM 232 O LYS 14 7.915 7.203 3.813 1.00 0.00 O ATOM 233 CB LYS 14 7.975 4.171 2.458 1.00 0.00 C ATOM 234 CG LYS 14 8.893 4.930 1.510 1.00 0.00 C ATOM 235 CD LYS 14 9.134 4.146 0.229 1.00 0.00 C ATOM 236 CE LYS 14 10.079 4.889 -0.705 1.00 0.00 C ATOM 237 NZ LYS 14 10.366 4.110 -1.941 1.00 0.00 N ATOM 251 N PHE 15 5.905 6.238 3.514 1.00 0.00 N ATOM 252 CA PHE 15 5.191 7.503 3.389 1.00 0.00 C ATOM 253 C PHE 15 4.179 7.679 4.515 1.00 0.00 C ATOM 254 O PHE 15 3.043 7.215 4.419 1.00 0.00 O ATOM 255 CB PHE 15 4.477 7.581 2.038 1.00 0.00 C ATOM 256 CG PHE 15 5.404 7.506 0.857 1.00 0.00 C ATOM 257 CD1 PHE 15 5.560 6.320 0.155 1.00 0.00 C ATOM 258 CD2 PHE 15 6.120 8.621 0.448 1.00 0.00 C ATOM 259 CE1 PHE 15 6.413 6.251 -0.930 1.00 0.00 C ATOM 260 CE2 PHE 15 6.971 8.554 -0.638 1.00 0.00 C ATOM 261 CZ PHE 15 7.118 7.367 -1.327 1.00 0.00 C ATOM 271 N LYS 16 4.599 8.352 5.580 1.00 0.00 N ATOM 272 CA LYS 16 3.820 8.402 6.811 1.00 0.00 C ATOM 273 C LYS 16 2.468 9.064 6.578 1.00 0.00 C ATOM 274 O LYS 16 1.483 8.734 7.240 1.00 0.00 O ATOM 275 CB LYS 16 4.589 9.147 7.903 1.00 0.00 C ATOM 276 CG LYS 16 5.807 8.402 8.433 1.00 0.00 C ATOM 277 CD LYS 16 6.529 9.212 9.499 1.00 0.00 C ATOM 278 CE LYS 16 7.752 8.474 10.024 1.00 0.00 C ATOM 279 NZ LYS 16 8.489 9.270 11.042 1.00 0.00 N ATOM 293 N ASN 17 2.427 10.000 5.637 1.00 0.00 N ATOM 294 CA ASN 17 1.224 10.789 5.392 1.00 0.00 C ATOM 295 C ASN 17 0.437 10.240 4.209 1.00 0.00 C ATOM 296 O ASN 17 -0.483 10.887 3.710 1.00 0.00 O ATOM 297 CB ASN 17 1.578 12.248 5.169 1.00 0.00 C ATOM 298 CG ASN 17 2.117 12.908 6.407 1.00 0.00 C ATOM 299 OD1 ASN 17 1.637 12.656 7.519 1.00 0.00 O ATOM 300 ND2 ASN 17 3.108 13.747 6.238 1.00 0.00 N ATOM 307 N CYS 18 0.806 9.044 3.763 1.00 0.00 N ATOM 308 CA CYS 18 0.151 8.416 2.622 1.00 0.00 C ATOM 309 C CYS 18 -1.010 7.537 3.069 1.00 0.00 C ATOM 310 O CYS 18 -1.015 7.018 4.184 1.00 0.00 O ATOM 311 CB CYS 18 1.147 7.571 1.827 1.00 0.00 C ATOM 312 SG CYS 18 0.404 6.636 0.469 1.00 0.00 S ATOM 318 N GLU 19 -1.995 7.374 2.191 1.00 0.00 N ATOM 319 CA GLU 19 -3.003 6.335 2.355 1.00 0.00 C ATOM 320 C GLU 19 -2.705 5.133 1.468 1.00 0.00 C ATOM 321 O GLU 19 -2.593 5.261 0.249 1.00 0.00 O ATOM 322 CB GLU 19 -4.395 6.886 2.033 1.00 0.00 C ATOM 323 CG GLU 19 -5.522 5.877 2.191 1.00 0.00 C ATOM 324 CD GLU 19 -6.874 6.456 1.882 1.00 0.00 C ATOM 325 OE1 GLU 19 -6.936 7.603 1.511 1.00 0.00 O ATOM 326 OE2 GLU 19 -7.847 5.751 2.018 1.00 0.00 O ATOM 333 N VAL 20 -2.577 3.965 2.087 1.00 0.00 N ATOM 334 CA VAL 20 -2.243 2.745 1.361 1.00 0.00 C ATOM 335 C VAL 20 -3.322 1.684 1.540 1.00 0.00 C ATOM 336 O VAL 20 -3.761 1.414 2.657 1.00 0.00 O ATOM 337 CB VAL 20 -0.893 2.187 1.847 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.537 0.916 1.088 1.00 0.00 C ATOM 339 CG2 VAL 20 0.193 3.238 1.678 1.00 0.00 C ATOM 349 N ARG 21 -3.746 1.087 0.431 1.00 0.00 N ATOM 350 CA ARG 21 -4.803 0.084 0.458 1.00 0.00 C ATOM 351 C ARG 21 -4.345 -1.219 -0.184 1.00 0.00 C ATOM 352 O ARG 21 -3.491 -1.218 -1.072 1.00 0.00 O ATOM 353 CB ARG 21 -6.043 0.593 -0.264 1.00 0.00 C ATOM 354 CG ARG 21 -6.672 1.836 0.344 1.00 0.00 C ATOM 355 CD ARG 21 -7.893 2.250 -0.394 1.00 0.00 C ATOM 356 NE ARG 21 -8.468 3.469 0.151 1.00 0.00 N ATOM 357 CZ ARG 21 -9.640 4.005 -0.243 1.00 0.00 C ATOM 358 NH1 ARG 21 -10.347 3.419 -1.183 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.077 5.120 0.315 1.00 0.00 N ATOM 373 N CYS 22 -4.915 -2.330 0.270 1.00 0.00 N ATOM 374 CA CYS 22 -4.640 -3.632 -0.327 1.00 0.00 C ATOM 375 C CYS 22 -5.728 -4.025 -1.317 1.00 0.00 C ATOM 376 O CYS 22 -6.899 -4.138 -0.954 1.00 0.00 O ATOM 377 CB CYS 22 -4.529 -4.707 0.754 1.00 0.00 C ATOM 378 SG CYS 22 -4.128 -6.353 0.121 1.00 0.00 S ATOM 384 N ASP 23 -5.335 -4.231 -2.569 1.00 0.00 N ATOM 385 CA ASP 23 -6.268 -4.659 -3.605 1.00 0.00 C ATOM 386 C ASP 23 -6.354 -6.178 -3.675 1.00 0.00 C ATOM 387 O ASP 23 -5.504 -6.830 -4.283 1.00 0.00 O ATOM 388 CB ASP 23 -5.850 -4.101 -4.967 1.00 0.00 C ATOM 389 CG ASP 23 -6.785 -4.523 -6.092 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.512 -5.471 -5.911 1.00 0.00 O ATOM 391 OD2 ASP 23 -6.764 -3.893 -7.123 1.00 0.00 O ATOM 396 N GLU 24 -7.386 -6.737 -3.052 1.00 0.00 N ATOM 397 CA GLU 24 -7.494 -8.182 -2.894 1.00 0.00 C ATOM 398 C GLU 24 -8.047 -8.835 -4.154 1.00 0.00 C ATOM 399 O GLU 24 -8.205 -10.055 -4.214 1.00 0.00 O ATOM 400 CB GLU 24 -8.386 -8.522 -1.698 1.00 0.00 C ATOM 401 CG GLU 24 -7.838 -8.064 -0.353 1.00 0.00 C ATOM 402 CD GLU 24 -6.562 -8.763 0.026 1.00 0.00 C ATOM 403 OE1 GLU 24 -6.099 -9.573 -0.740 1.00 0.00 O ATOM 404 OE2 GLU 24 -6.048 -8.485 1.085 1.00 0.00 O ATOM 411 N SER 25 -8.339 -8.016 -5.158 1.00 0.00 N ATOM 412 CA SER 25 -8.814 -8.518 -6.442 1.00 0.00 C ATOM 413 C SER 25 -7.662 -8.700 -7.423 1.00 0.00 C ATOM 414 O SER 25 -7.639 -9.657 -8.197 1.00 0.00 O ATOM 415 CB SER 25 -9.841 -7.568 -7.027 1.00 0.00 C ATOM 416 OG SER 25 -10.982 -7.504 -6.217 1.00 0.00 O ATOM 422 N ASN 26 -6.708 -7.777 -7.385 1.00 0.00 N ATOM 423 CA ASN 26 -5.530 -7.856 -8.240 1.00 0.00 C ATOM 424 C ASN 26 -4.280 -8.169 -7.430 1.00 0.00 C ATOM 425 O ASN 26 -3.185 -8.290 -7.980 1.00 0.00 O ATOM 426 CB ASN 26 -5.352 -6.568 -9.023 1.00 0.00 C ATOM 427 CG ASN 26 -6.485 -6.308 -9.976 1.00 0.00 C ATOM 428 OD1 ASN 26 -6.585 -6.947 -11.030 1.00 0.00 O ATOM 429 ND2 ASN 26 -7.342 -5.383 -9.625 1.00 0.00 N ATOM 436 N HIS 27 -4.447 -8.298 -6.118 1.00 0.00 N ATOM 437 CA HIS 27 -3.332 -8.601 -5.229 1.00 0.00 C ATOM 438 C HIS 27 -2.222 -7.569 -5.367 1.00 0.00 C ATOM 439 O HIS 27 -1.041 -7.915 -5.417 1.00 0.00 O ATOM 440 CB HIS 27 -2.776 -10.000 -5.516 1.00 0.00 C ATOM 441 CG HIS 27 -3.800 -11.088 -5.413 1.00 0.00 C ATOM 442 ND1 HIS 27 -4.331 -11.497 -4.207 1.00 0.00 N ATOM 443 CD2 HIS 27 -4.389 -11.850 -6.363 1.00 0.00 C ATOM 444 CE1 HIS 27 -5.204 -12.466 -4.422 1.00 0.00 C ATOM 445 NE2 HIS 27 -5.258 -12.699 -5.721 1.00 0.00 N ATOM 453 N CYS 28 -2.606 -6.299 -5.428 1.00 0.00 N ATOM 454 CA CYS 28 -1.649 -5.218 -5.636 1.00 0.00 C ATOM 455 C CYS 28 -1.704 -4.208 -4.497 1.00 0.00 C ATOM 456 O CYS 28 -2.678 -4.156 -3.746 1.00 0.00 O ATOM 457 CB CYS 28 -1.925 -4.502 -6.959 1.00 0.00 C ATOM 458 SG CYS 28 -1.773 -5.561 -8.417 1.00 0.00 S ATOM 464 N VAL 29 -0.652 -3.405 -4.374 1.00 0.00 N ATOM 465 CA VAL 29 -0.609 -2.346 -3.373 1.00 0.00 C ATOM 466 C VAL 29 -0.950 -0.995 -3.985 1.00 0.00 C ATOM 467 O VAL 29 -0.311 -0.555 -4.941 1.00 0.00 O ATOM 468 CB VAL 29 0.789 -2.277 -2.729 1.00 0.00 C ATOM 469 CG1 VAL 29 0.826 -1.201 -1.653 1.00 0.00 C ATOM 470 CG2 VAL 29 1.161 -3.633 -2.149 1.00 0.00 C ATOM 480 N GLU 30 -1.964 -0.339 -3.429 1.00 0.00 N ATOM 481 CA GLU 30 -2.365 0.986 -3.891 1.00 0.00 C ATOM 482 C GLU 30 -1.845 2.074 -2.961 1.00 0.00 C ATOM 483 O GLU 30 -2.221 2.135 -1.790 1.00 0.00 O ATOM 484 CB GLU 30 -3.889 1.074 -3.996 1.00 0.00 C ATOM 485 CG GLU 30 -4.406 2.411 -4.509 1.00 0.00 C ATOM 486 CD GLU 30 -5.906 2.460 -4.605 1.00 0.00 C ATOM 487 OE1 GLU 30 -6.535 1.482 -4.277 1.00 0.00 O ATOM 488 OE2 GLU 30 -6.423 3.476 -5.007 1.00 0.00 O ATOM 495 N VAL 31 -0.980 2.933 -3.490 1.00 0.00 N ATOM 496 CA VAL 31 -0.314 3.945 -2.678 1.00 0.00 C ATOM 497 C VAL 31 -0.677 5.350 -3.143 1.00 0.00 C ATOM 498 O VAL 31 -0.245 5.793 -4.207 1.00 0.00 O ATOM 499 CB VAL 31 1.214 3.763 -2.747 1.00 0.00 C ATOM 500 CG1 VAL 31 1.913 4.802 -1.881 1.00 0.00 C ATOM 501 CG2 VAL 31 1.587 2.356 -2.308 1.00 0.00 C ATOM 511 N ARG 32 -1.472 6.047 -2.338 1.00 0.00 N ATOM 512 CA ARG 32 -1.961 7.371 -2.704 1.00 0.00 C ATOM 513 C ARG 32 -1.193 8.464 -1.974 1.00 0.00 C ATOM 514 O ARG 32 -1.316 8.615 -0.758 1.00 0.00 O ATOM 515 CB ARG 32 -3.444 7.500 -2.388 1.00 0.00 C ATOM 516 CG ARG 32 -4.046 8.864 -2.687 1.00 0.00 C ATOM 517 CD ARG 32 -5.469 8.940 -2.267 1.00 0.00 C ATOM 518 NE ARG 32 -6.016 10.275 -2.446 1.00 0.00 N ATOM 519 CZ ARG 32 -7.280 10.631 -2.147 1.00 0.00 C ATOM 520 NH1 ARG 32 -8.114 9.740 -1.655 1.00 0.00 N ATOM 521 NH2 ARG 32 -7.683 11.873 -2.347 1.00 0.00 N ATOM 535 N CYS 33 -0.399 9.224 -2.720 1.00 0.00 N ATOM 536 CA CYS 33 0.333 10.352 -2.158 1.00 0.00 C ATOM 537 C CYS 33 -0.199 11.676 -2.693 1.00 0.00 C ATOM 538 O CYS 33 0.194 12.123 -3.770 1.00 0.00 O ATOM 539 CB CYS 33 1.823 10.240 -2.480 1.00 0.00 C ATOM 540 SG CYS 33 2.614 8.757 -1.813 1.00 0.00 S ATOM 546 N SER 34 -1.095 12.297 -1.935 1.00 0.00 N ATOM 547 CA SER 34 -1.862 13.434 -2.430 1.00 0.00 C ATOM 548 C SER 34 -2.706 13.044 -3.638 1.00 0.00 C ATOM 549 O SER 34 -3.582 12.184 -3.543 1.00 0.00 O ATOM 550 CB SER 34 -0.931 14.572 -2.799 1.00 0.00 C ATOM 551 OG SER 34 -1.644 15.762 -2.991 1.00 0.00 O ATOM 557 N ASP 35 -2.437 13.681 -4.772 1.00 0.00 N ATOM 558 CA ASP 35 -3.215 13.452 -5.984 1.00 0.00 C ATOM 559 C ASP 35 -2.482 12.520 -6.941 1.00 0.00 C ATOM 560 O ASP 35 -2.894 12.345 -8.088 1.00 0.00 O ATOM 561 CB ASP 35 -3.519 14.778 -6.685 1.00 0.00 C ATOM 562 CG ASP 35 -4.418 15.691 -5.862 1.00 0.00 C ATOM 563 OD1 ASP 35 -5.356 15.200 -5.278 1.00 0.00 O ATOM 564 OD2 ASP 35 -4.158 16.870 -5.825 1.00 0.00 O ATOM 569 N THR 36 -1.395 11.924 -6.462 1.00 0.00 N ATOM 570 CA THR 36 -0.625 10.978 -7.262 1.00 0.00 C ATOM 571 C THR 36 -0.664 9.583 -6.653 1.00 0.00 C ATOM 572 O THR 36 -0.409 9.407 -5.462 1.00 0.00 O ATOM 573 CB THR 36 0.837 11.438 -7.409 1.00 0.00 C ATOM 574 OG1 THR 36 0.877 12.706 -8.078 1.00 0.00 O ATOM 575 CG2 THR 36 1.639 10.422 -8.207 1.00 0.00 C ATOM 583 N LYS 37 -0.986 8.592 -7.478 1.00 0.00 N ATOM 584 CA LYS 37 -1.068 7.210 -7.020 1.00 0.00 C ATOM 585 C LYS 37 0.070 6.373 -7.589 1.00 0.00 C ATOM 586 O LYS 37 0.535 6.614 -8.703 1.00 0.00 O ATOM 587 CB LYS 37 -2.416 6.598 -7.405 1.00 0.00 C ATOM 588 CG LYS 37 -3.609 7.194 -6.671 1.00 0.00 C ATOM 589 CD LYS 37 -4.862 6.357 -6.883 1.00 0.00 C ATOM 590 CE LYS 37 -6.037 6.906 -6.087 1.00 0.00 C ATOM 591 NZ LYS 37 -7.220 6.005 -6.148 1.00 0.00 N ATOM 605 N TYR 38 0.514 5.385 -6.819 1.00 0.00 N ATOM 606 CA TYR 38 1.457 4.391 -7.315 1.00 0.00 C ATOM 607 C TYR 38 0.924 2.978 -7.119 1.00 0.00 C ATOM 608 O TYR 38 0.130 2.724 -6.212 1.00 0.00 O ATOM 609 CB TYR 38 2.813 4.546 -6.621 1.00 0.00 C ATOM 610 CG TYR 38 3.366 5.954 -6.670 1.00 0.00 C ATOM 611 CD1 TYR 38 2.989 6.880 -5.709 1.00 0.00 C ATOM 612 CD2 TYR 38 4.250 6.317 -7.675 1.00 0.00 C ATOM 613 CE1 TYR 38 3.495 8.165 -5.753 1.00 0.00 C ATOM 614 CE2 TYR 38 4.754 7.602 -7.719 1.00 0.00 C ATOM 615 CZ TYR 38 4.379 8.524 -6.764 1.00 0.00 C ATOM 616 OH TYR 38 4.882 9.804 -6.807 1.00 0.00 O ATOM 626 N THR 39 1.361 2.061 -7.974 1.00 0.00 N ATOM 627 CA THR 39 0.981 0.659 -7.857 1.00 0.00 C ATOM 628 C THR 39 2.207 -0.235 -7.725 1.00 0.00 C ATOM 629 O THR 39 3.152 -0.127 -8.506 1.00 0.00 O ATOM 630 CB THR 39 0.140 0.209 -9.066 1.00 0.00 C ATOM 631 OG1 THR 39 -1.052 1.003 -9.145 1.00 0.00 O ATOM 632 CG2 THR 39 -0.240 -1.258 -8.935 1.00 0.00 C ATOM 640 N LEU 40 2.185 -1.118 -6.732 1.00 0.00 N ATOM 641 CA LEU 40 3.254 -2.092 -6.549 1.00 0.00 C ATOM 642 C LEU 40 2.706 -3.513 -6.516 1.00 0.00 C ATOM 643 O LEU 40 1.602 -3.750 -6.026 1.00 0.00 O ATOM 644 CB LEU 40 4.020 -1.802 -5.251 1.00 0.00 C ATOM 645 CG LEU 40 4.546 -0.369 -5.095 1.00 0.00 C ATOM 646 CD1 LEU 40 3.462 0.507 -4.481 1.00 0.00 C ATOM 647 CD2 LEU 40 5.797 -0.379 -4.230 1.00 0.00 C ATOM 659 N CYS 41 3.484 -4.454 -7.039 1.00 0.00 N ATOM 660 CA CYS 41 3.091 -5.858 -7.043 1.00 0.00 C ATOM 661 C CYS 41 4.111 -6.717 -6.307 1.00 0.00 C ATOM 662 O CYS 41 4.100 -6.768 -5.109 1.00 0.00 O ATOM 663 OXT CYS 41 4.926 -7.344 -6.927 1.00 0.00 O ATOM 664 CB CYS 41 2.937 -6.370 -8.475 1.00 0.00 C ATOM 665 SG CYS 41 1.693 -5.488 -9.445 1.00 0.00 S TER END