####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS381_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS381_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 6 - 41 4.78 5.69 LCS_AVERAGE: 83.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 28 - 41 1.99 6.51 LCS_AVERAGE: 22.72 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 18 - 24 0.89 10.40 LONGEST_CONTINUOUS_SEGMENT: 7 26 - 32 0.73 7.44 LONGEST_CONTINUOUS_SEGMENT: 7 27 - 33 0.98 6.19 LCS_AVERAGE: 11.84 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 21 3 3 4 4 10 16 21 24 26 29 30 34 36 37 37 38 39 39 40 40 LCS_GDT Q 2 Q 2 3 4 21 3 3 4 9 14 17 21 24 26 29 30 34 36 37 37 38 39 39 40 40 LCS_GDT E 3 E 3 3 5 21 3 3 4 4 12 15 18 22 26 29 30 34 36 37 37 38 39 39 40 40 LCS_GDT T 4 T 4 3 5 21 3 3 4 4 7 7 13 15 23 25 29 31 36 37 37 38 39 39 40 40 LCS_GDT R 5 R 5 3 5 21 3 3 4 4 7 7 9 10 20 24 29 30 31 31 33 37 39 39 39 40 LCS_GDT K 6 K 6 3 5 36 3 3 4 4 7 13 15 18 23 26 29 30 31 33 37 38 39 39 40 40 LCS_GDT K 7 K 7 3 5 36 3 4 6 8 12 15 21 24 26 29 30 34 36 37 37 38 39 39 40 40 LCS_GDT C 8 C 8 3 5 36 0 3 3 7 12 16 21 24 26 29 30 34 36 37 37 38 39 39 40 40 LCS_GDT T 9 T 9 3 5 36 0 4 4 4 5 14 18 24 26 29 30 34 36 37 37 38 39 39 40 40 LCS_GDT E 10 E 10 3 6 36 0 4 4 5 11 14 21 23 25 28 31 34 36 37 37 38 39 39 40 40 LCS_GDT M 11 M 11 4 6 36 3 4 7 10 14 18 21 23 25 28 31 34 36 37 37 38 39 39 40 40 LCS_GDT K 12 K 12 4 6 36 3 4 6 10 14 18 21 23 25 28 31 34 36 37 37 38 39 39 40 40 LCS_GDT K 13 K 13 4 6 36 3 4 6 9 14 16 21 23 25 28 31 32 36 37 37 38 39 39 40 40 LCS_GDT K 14 K 14 4 6 36 3 3 5 9 11 13 21 23 24 27 31 32 36 37 37 38 39 39 40 40 LCS_GDT F 15 F 15 4 6 36 3 3 4 7 10 13 21 23 24 27 31 34 36 37 37 38 39 39 40 40 LCS_GDT K 16 K 16 4 5 36 3 3 4 4 6 6 18 23 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT N 17 N 17 4 8 36 3 6 10 13 17 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT C 18 C 18 7 8 36 3 5 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT E 19 E 19 7 8 36 3 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT V 20 V 20 7 8 36 4 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT R 21 R 21 7 8 36 4 6 10 15 18 21 22 23 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT C 22 C 22 7 8 36 4 6 9 12 15 18 21 23 25 28 31 34 36 37 37 38 39 39 40 40 LCS_GDT D 23 D 23 7 8 36 4 6 9 12 15 16 20 22 25 28 31 32 33 37 37 38 39 39 40 40 LCS_GDT E 24 E 24 7 8 36 3 6 9 12 15 16 20 22 24 28 30 32 32 32 34 38 38 39 40 40 LCS_GDT S 25 S 25 4 12 36 4 6 10 15 18 21 22 23 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT N 26 N 26 7 13 36 4 6 10 13 16 20 22 24 26 29 31 34 35 37 37 38 39 39 40 40 LCS_GDT H 27 H 27 7 13 36 5 6 10 13 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT C 28 C 28 7 14 36 5 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT V 29 V 29 7 14 36 5 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT E 30 E 30 7 14 36 4 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT V 31 V 31 7 14 36 5 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT R 32 R 32 7 14 36 5 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT C 33 C 33 7 14 36 4 6 9 13 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT S 34 S 34 6 14 36 4 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT D 35 D 35 4 14 36 3 4 4 15 18 21 22 23 25 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT T 36 T 36 4 14 36 3 4 8 13 16 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT K 37 K 37 4 14 36 3 4 6 14 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT Y 38 Y 38 4 14 36 3 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT T 39 T 39 4 14 36 3 6 9 11 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT L 40 L 40 3 14 36 3 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_GDT C 41 C 41 3 14 36 3 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 LCS_AVERAGE LCS_A: 39.30 ( 11.84 22.72 83.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 10 15 18 21 22 24 26 29 31 34 36 37 37 38 39 39 40 40 GDT PERCENT_AT 12.20 14.63 24.39 36.59 43.90 51.22 53.66 58.54 63.41 70.73 75.61 82.93 87.80 90.24 90.24 92.68 95.12 95.12 97.56 97.56 GDT RMS_LOCAL 0.35 0.47 1.05 1.46 1.72 1.99 2.13 2.77 2.96 3.29 3.53 4.20 4.55 4.60 4.58 4.71 4.88 4.88 5.09 5.09 GDT RMS_ALL_AT 7.85 7.57 6.81 6.91 6.76 6.45 6.34 6.24 6.11 5.88 6.74 5.37 5.36 5.38 5.35 5.36 5.33 5.33 5.34 5.34 # Checking swapping # possible swapping detected: F 15 F 15 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.244 0 0.064 0.597 6.361 36.364 24.242 6.361 LGA Q 2 Q 2 2.195 0 0.215 0.906 2.987 38.636 45.657 1.828 LGA E 3 E 3 4.736 0 0.105 1.138 9.181 3.182 1.414 9.181 LGA T 4 T 4 6.953 0 0.293 0.311 9.088 0.000 0.000 9.088 LGA R 5 R 5 8.010 0 0.617 1.201 17.051 0.000 0.000 17.051 LGA K 6 K 6 6.507 0 0.275 0.920 7.889 0.455 0.202 7.023 LGA K 7 K 7 3.856 0 0.625 1.218 7.570 10.455 5.455 7.570 LGA C 8 C 8 3.177 0 0.554 0.815 3.722 26.364 23.636 3.117 LGA T 9 T 9 4.601 0 0.579 1.227 8.929 1.818 1.039 8.929 LGA E 10 E 10 9.392 0 0.586 0.805 17.250 0.000 0.000 17.250 LGA M 11 M 11 10.019 0 0.635 1.462 16.053 0.000 0.000 16.053 LGA K 12 K 12 10.917 0 0.241 0.622 13.695 0.000 0.000 13.695 LGA K 13 K 13 13.533 0 0.047 0.174 15.921 0.000 0.000 15.921 LGA K 14 K 14 12.916 0 0.645 0.628 17.774 0.000 0.000 17.774 LGA F 15 F 15 9.592 0 0.168 1.339 15.753 0.000 0.000 15.753 LGA K 16 K 16 5.319 0 0.067 1.322 7.329 9.545 4.242 7.329 LGA N 17 N 17 1.870 0 0.286 1.063 6.008 43.182 22.273 6.008 LGA C 18 C 18 2.212 0 0.036 0.088 2.940 44.545 38.788 2.940 LGA E 19 E 19 1.691 0 0.277 0.893 4.190 58.636 45.657 2.892 LGA V 20 V 20 3.881 0 0.077 0.950 6.295 7.727 6.234 3.542 LGA R 21 R 21 5.332 0 0.122 1.092 8.932 1.364 0.661 7.515 LGA C 22 C 22 8.877 0 0.058 0.145 9.925 0.000 0.000 9.711 LGA D 23 D 23 10.898 0 0.413 0.439 14.016 0.000 0.000 9.718 LGA E 24 E 24 12.743 0 0.034 0.141 19.782 0.000 0.000 18.035 LGA S 25 S 25 6.640 0 0.580 0.741 8.760 0.455 0.303 7.479 LGA N 26 N 26 2.686 0 0.671 0.941 7.054 25.000 13.864 7.054 LGA H 27 H 27 2.429 0 0.151 0.976 4.494 32.727 27.273 3.736 LGA C 28 C 28 3.078 0 0.041 0.043 3.830 27.727 23.333 3.830 LGA V 29 V 29 2.488 0 0.038 0.890 3.377 35.455 32.208 3.377 LGA E 30 E 30 1.858 0 0.042 0.727 3.939 47.727 33.737 3.939 LGA V 31 V 31 1.255 0 0.096 0.958 2.728 65.455 56.104 2.160 LGA R 32 R 32 1.079 0 0.206 0.743 4.581 65.455 44.793 4.581 LGA C 33 C 33 2.199 0 0.027 0.861 5.225 55.000 38.485 5.225 LGA S 34 S 34 3.662 0 0.172 0.170 5.363 10.909 8.485 4.076 LGA D 35 D 35 5.042 0 0.618 1.083 6.840 4.545 2.273 5.268 LGA T 36 T 36 1.651 0 0.237 0.907 3.497 38.636 31.169 3.384 LGA K 37 K 37 2.786 0 0.073 1.138 4.308 23.636 18.586 2.809 LGA Y 38 Y 38 3.419 0 0.641 1.282 4.972 14.545 19.394 4.491 LGA T 39 T 39 2.940 0 0.331 0.943 6.253 48.182 28.052 4.628 LGA L 40 L 40 2.926 0 0.105 0.728 10.112 35.455 17.727 8.558 LGA C 41 C 41 1.907 0 0.245 0.848 5.769 28.182 23.896 4.934 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.323 5.312 6.610 20.521 15.590 6.962 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 24 2.77 50.610 46.642 0.837 LGA_LOCAL RMSD: 2.769 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.241 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.323 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.506242 * X + -0.211999 * Y + -0.835928 * Z + -1.591278 Y_new = 0.699514 * X + -0.667859 * Y + -0.254254 * Z + 1.372881 Z_new = -0.504380 * X + -0.713457 * Y + 0.486394 * Z + -0.503032 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.197255 0.528664 -0.972429 [DEG: 125.8934 30.2902 -55.7161 ] ZXZ: -1.275530 1.062838 -2.526216 [DEG: -73.0825 60.8962 -144.7415 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS381_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS381_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 24 2.77 46.642 5.32 REMARK ---------------------------------------------------------- MOLECULE T0955TS381_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 CB SER 1 4.306 -16.078 0.560 1.00 0.00 C ATOM 2 OG SER 1 5.053 -15.452 -0.472 1.00 0.00 O ATOM 4 C SER 1 2.246 -14.642 0.355 1.00 0.00 C ATOM 5 O SER 1 2.210 -13.918 -0.647 1.00 0.00 O ATOM 8 N SER 1 2.550 -16.661 -1.093 1.00 0.00 N ATOM 10 CA SER 1 2.804 -16.070 0.252 1.00 0.00 C ATOM 11 N GLN 2 1.813 -14.261 1.565 1.00 0.00 N ATOM 13 CA GLN 2 1.246 -12.931 1.862 1.00 0.00 C ATOM 14 CB GLN 2 -0.107 -13.055 2.616 1.00 0.00 C ATOM 15 CG GLN 2 -0.188 -14.036 3.825 1.00 0.00 C ATOM 16 CD GLN 2 0.052 -13.362 5.174 1.00 0.00 C ATOM 17 OE1 GLN 2 -0.872 -12.824 5.785 1.00 0.00 O ATOM 18 NE2 GLN 2 1.296 -13.392 5.640 1.00 0.00 N ATOM 21 C GLN 2 2.217 -12.001 2.615 1.00 0.00 C ATOM 22 O GLN 2 2.230 -10.791 2.369 1.00 0.00 O ATOM 23 N GLU 3 3.031 -12.593 3.509 1.00 0.00 N ATOM 25 CA GLU 3 4.052 -11.928 4.367 1.00 0.00 C ATOM 26 CB GLU 3 5.212 -11.329 3.541 1.00 0.00 C ATOM 27 CG GLU 3 6.094 -12.359 2.841 1.00 0.00 C ATOM 28 CD GLU 3 7.219 -11.724 2.044 1.00 0.00 C ATOM 29 OE1 GLU 3 7.010 -11.433 0.847 1.00 0.00 O ATOM 30 OE2 GLU 3 8.311 -11.518 2.613 1.00 0.00 O ATOM 31 C GLU 3 3.535 -10.892 5.384 1.00 0.00 C ATOM 32 O GLU 3 3.874 -10.975 6.571 1.00 0.00 O ATOM 33 N THR 4 2.708 -9.938 4.911 1.00 0.00 N ATOM 35 CA THR 4 2.071 -8.824 5.677 1.00 0.00 C ATOM 36 CB THR 4 0.606 -9.220 6.210 1.00 0.00 C ATOM 37 OG1 THR 4 -0.018 -8.083 6.821 1.00 0.00 O ATOM 39 CG2 THR 4 0.636 -10.391 7.214 1.00 0.00 C ATOM 40 C THR 4 2.931 -8.061 6.739 1.00 0.00 C ATOM 41 O THR 4 2.404 -7.250 7.517 1.00 0.00 O ATOM 42 N ARG 5 4.252 -8.289 6.703 1.00 0.00 N ATOM 44 CA ARG 5 5.223 -7.668 7.624 1.00 0.00 C ATOM 45 CB ARG 5 6.178 -8.726 8.227 1.00 0.00 C ATOM 46 CG ARG 5 6.812 -9.743 7.252 1.00 0.00 C ATOM 47 CD ARG 5 7.721 -10.717 7.984 1.00 0.00 C ATOM 48 NE ARG 5 8.333 -11.689 7.075 1.00 0.00 N ATOM 50 CZ ARG 5 9.174 -12.659 7.439 1.00 0.00 C ATOM 51 NH1 ARG 5 9.531 -12.819 8.710 1.00 0.00 N ATOM 54 NH2 ARG 5 9.662 -13.479 6.520 1.00 0.00 N ATOM 57 C ARG 5 6.014 -6.496 7.006 1.00 0.00 C ATOM 58 O ARG 5 6.375 -6.545 5.826 1.00 0.00 O ATOM 59 N LYS 6 6.287 -5.467 7.830 1.00 0.00 N ATOM 61 CA LYS 6 7.028 -4.214 7.500 1.00 0.00 C ATOM 62 CB LYS 6 8.556 -4.350 7.789 1.00 0.00 C ATOM 63 CG LYS 6 9.333 -5.467 7.061 1.00 0.00 C ATOM 64 CD LYS 6 10.802 -5.463 7.451 1.00 0.00 C ATOM 65 CE LYS 6 11.568 -6.563 6.734 1.00 0.00 C ATOM 66 NZ LYS 6 13.008 -6.570 7.108 1.00 0.00 N ATOM 70 C LYS 6 6.753 -3.461 6.163 1.00 0.00 C ATOM 71 O LYS 6 7.390 -2.434 5.884 1.00 0.00 O ATOM 72 N LYS 7 5.776 -3.951 5.386 1.00 0.00 N ATOM 74 CA LYS 7 5.385 -3.361 4.089 1.00 0.00 C ATOM 75 CB LYS 7 5.351 -4.429 2.969 1.00 0.00 C ATOM 76 CG LYS 7 4.585 -5.738 3.258 1.00 0.00 C ATOM 77 CD LYS 7 4.639 -6.684 2.063 1.00 0.00 C ATOM 78 CE LYS 7 3.885 -7.986 2.320 1.00 0.00 C ATOM 79 NZ LYS 7 2.404 -7.810 2.416 1.00 0.00 N ATOM 83 C LYS 7 4.062 -2.571 4.145 1.00 0.00 C ATOM 84 O LYS 7 3.135 -2.967 4.859 1.00 0.00 O ATOM 85 N CYS 8 3.997 -1.469 3.375 1.00 0.00 N ATOM 87 CA CYS 8 2.847 -0.530 3.243 1.00 0.00 C ATOM 88 CB CYS 8 1.743 -1.099 2.327 1.00 0.00 C ATOM 89 SG CYS 8 0.952 -2.617 2.918 1.00 0.00 S ATOM 90 C CYS 8 2.223 0.047 4.533 1.00 0.00 C ATOM 91 O CYS 8 2.151 -0.641 5.557 1.00 0.00 O ATOM 92 N THR 9 1.773 1.310 4.452 1.00 0.00 N ATOM 94 CA THR 9 1.144 2.051 5.566 1.00 0.00 C ATOM 95 CB THR 9 1.580 3.551 5.564 1.00 0.00 C ATOM 96 OG1 THR 9 1.420 4.101 4.249 1.00 0.00 O ATOM 98 CG2 THR 9 3.034 3.691 6.004 1.00 0.00 C ATOM 99 C THR 9 -0.397 1.947 5.528 1.00 0.00 C ATOM 100 O THR 9 -0.952 1.457 4.538 1.00 0.00 O ATOM 101 N GLU 10 -1.067 2.407 6.599 1.00 0.00 N ATOM 103 CA GLU 10 -2.540 2.385 6.749 1.00 0.00 C ATOM 104 CB GLU 10 -2.956 2.808 8.178 1.00 0.00 C ATOM 105 CG GLU 10 -2.272 4.063 8.766 1.00 0.00 C ATOM 106 CD GLU 10 -2.674 4.330 10.205 1.00 0.00 C ATOM 107 OE1 GLU 10 -2.019 3.783 11.118 1.00 0.00 O ATOM 108 OE2 GLU 10 -3.640 5.089 10.422 1.00 0.00 O ATOM 109 C GLU 10 -3.347 3.164 5.682 1.00 0.00 C ATOM 110 O GLU 10 -2.946 4.262 5.277 1.00 0.00 O ATOM 111 N MET 11 -4.474 2.577 5.256 1.00 0.00 N ATOM 113 CA MET 11 -5.380 3.135 4.233 1.00 0.00 C ATOM 114 CG MET 11 -6.869 2.348 2.195 1.00 0.00 C ATOM 115 SD MET 11 -8.599 2.457 2.700 1.00 0.00 S ATOM 116 CE MET 11 -9.229 0.869 2.137 1.00 0.00 C ATOM 117 C MET 11 -6.530 3.974 4.837 1.00 0.00 C ATOM 118 O MET 11 -7.095 3.611 5.876 1.00 0.00 O ATOM 119 CB MET 11 -5.910 1.984 3.346 1.00 0.00 C ATOM 120 N LYS 12 -6.847 5.091 4.155 1.00 0.00 N ATOM 122 CA LYS 12 -7.910 6.080 4.485 1.00 0.00 C ATOM 123 CB LYS 12 -9.261 5.666 3.861 1.00 0.00 C ATOM 124 CG LYS 12 -9.336 5.834 2.347 1.00 0.00 C ATOM 125 CD LYS 12 -10.692 5.407 1.811 1.00 0.00 C ATOM 126 CE LYS 12 -10.766 5.574 0.302 1.00 0.00 C ATOM 127 NZ LYS 12 -12.091 5.159 -0.238 1.00 0.00 N ATOM 131 C LYS 12 -8.088 6.537 5.957 1.00 0.00 C ATOM 132 O LYS 12 -9.089 7.187 6.299 1.00 0.00 O ATOM 133 N LYS 13 -7.086 6.237 6.795 1.00 0.00 N ATOM 135 CA LYS 13 -7.072 6.596 8.226 1.00 0.00 C ATOM 136 CB LYS 13 -6.567 5.423 9.079 1.00 0.00 C ATOM 137 CG LYS 13 -7.510 4.226 9.141 1.00 0.00 C ATOM 138 CD LYS 13 -6.934 3.110 10.006 1.00 0.00 C ATOM 139 CE LYS 13 -7.863 1.901 10.082 1.00 0.00 C ATOM 140 NZ LYS 13 -9.123 2.161 10.841 1.00 0.00 N ATOM 144 C LYS 13 -6.190 7.833 8.460 1.00 0.00 C ATOM 145 O LYS 13 -6.518 8.679 9.300 1.00 0.00 O ATOM 146 N LYS 14 -5.080 7.915 7.710 1.00 0.00 N ATOM 148 CA LYS 14 -4.111 9.025 7.773 1.00 0.00 C ATOM 149 CB LYS 14 -2.767 8.563 8.367 1.00 0.00 C ATOM 150 CG LYS 14 -2.809 8.219 9.852 1.00 0.00 C ATOM 151 CD LYS 14 -1.436 7.793 10.360 1.00 0.00 C ATOM 152 CE LYS 14 -1.454 7.443 11.847 1.00 0.00 C ATOM 153 NZ LYS 14 -1.680 8.623 12.735 1.00 0.00 N ATOM 157 C LYS 14 -3.881 9.600 6.367 1.00 0.00 C ATOM 158 O LYS 14 -3.847 8.846 5.386 1.00 0.00 O ATOM 159 N PHE 15 -3.750 10.932 6.286 1.00 0.00 N ATOM 161 CA PHE 15 -3.517 11.669 5.028 1.00 0.00 C ATOM 162 CB PHE 15 -4.601 12.773 4.851 1.00 0.00 C ATOM 163 CG PHE 15 -4.917 13.148 3.399 1.00 0.00 C ATOM 164 CD1 PHE 15 -4.223 14.200 2.752 1.00 0.00 C ATOM 165 CD2 PHE 15 -5.942 12.481 2.687 1.00 0.00 C ATOM 166 CE1 PHE 15 -4.543 14.582 1.420 1.00 0.00 C ATOM 167 CE2 PHE 15 -6.273 12.852 1.353 1.00 0.00 C ATOM 168 CZ PHE 15 -5.571 13.906 0.720 1.00 0.00 C ATOM 169 C PHE 15 -2.094 12.277 5.079 1.00 0.00 C ATOM 170 O PHE 15 -1.781 13.226 4.344 1.00 0.00 O ATOM 171 N LYS 16 -1.235 11.676 5.913 1.00 0.00 N ATOM 173 CA LYS 16 0.163 12.103 6.108 1.00 0.00 C ATOM 174 CB LYS 16 0.525 12.102 7.601 1.00 0.00 C ATOM 175 CG LYS 16 -0.172 13.177 8.429 1.00 0.00 C ATOM 176 CD LYS 16 0.243 13.104 9.895 1.00 0.00 C ATOM 177 CE LYS 16 -0.442 14.173 10.742 1.00 0.00 C ATOM 178 NZ LYS 16 -1.913 13.956 10.903 1.00 0.00 N ATOM 182 C LYS 16 1.167 11.232 5.333 1.00 0.00 C ATOM 183 O LYS 16 2.207 11.738 4.891 1.00 0.00 O ATOM 184 N ASN 17 0.840 9.941 5.165 1.00 0.00 N ATOM 186 CA ASN 17 1.697 8.973 4.456 1.00 0.00 C ATOM 187 CB ASN 17 1.989 7.754 5.356 1.00 0.00 C ATOM 188 CG ASN 17 3.398 7.189 5.157 1.00 0.00 C ATOM 189 OD1 ASN 17 4.336 7.568 5.861 1.00 0.00 O ATOM 190 ND2 ASN 17 3.542 6.272 4.204 1.00 0.00 N ATOM 193 C ASN 17 1.129 8.525 3.092 1.00 0.00 C ATOM 194 O ASN 17 1.500 9.104 2.064 1.00 0.00 O ATOM 195 N CYS 18 0.284 7.478 3.087 1.00 0.00 N ATOM 197 CA CYS 18 -0.334 6.904 1.872 1.00 0.00 C ATOM 198 CB CYS 18 0.633 5.932 1.176 1.00 0.00 C ATOM 199 SG CYS 18 2.127 6.690 0.492 1.00 0.00 S ATOM 200 C CYS 18 -1.654 6.164 2.151 1.00 0.00 C ATOM 201 O CYS 18 -1.834 5.600 3.237 1.00 0.00 O ATOM 202 N GLU 19 -2.561 6.188 1.161 1.00 0.00 N ATOM 204 CA GLU 19 -3.883 5.522 1.198 1.00 0.00 C ATOM 205 CB GLU 19 -5.022 6.556 1.136 1.00 0.00 C ATOM 206 CG GLU 19 -5.056 7.566 2.281 1.00 0.00 C ATOM 207 CD GLU 19 -6.020 8.708 2.020 1.00 0.00 C ATOM 208 OE1 GLU 19 -7.185 8.623 2.463 1.00 0.00 O ATOM 209 OE2 GLU 19 -5.613 9.695 1.369 1.00 0.00 O ATOM 210 C GLU 19 -3.950 4.641 -0.058 1.00 0.00 C ATOM 211 O GLU 19 -3.509 5.084 -1.122 1.00 0.00 O ATOM 212 N VAL 20 -4.524 3.431 0.044 1.00 0.00 N ATOM 214 CA VAL 20 -4.627 2.512 -1.112 1.00 0.00 C ATOM 215 CB VAL 20 -3.895 1.121 -0.895 1.00 0.00 C ATOM 216 CG1 VAL 20 -2.392 1.311 -0.965 1.00 0.00 C ATOM 217 CG2 VAL 20 -4.272 0.463 0.440 1.00 0.00 C ATOM 218 C VAL 20 -6.038 2.302 -1.696 1.00 0.00 C ATOM 219 O VAL 20 -6.998 2.032 -0.962 1.00 0.00 O ATOM 220 N ARG 21 -6.133 2.465 -3.024 1.00 0.00 N ATOM 222 CA ARG 21 -7.373 2.323 -3.805 1.00 0.00 C ATOM 223 CB ARG 21 -7.817 3.694 -4.351 1.00 0.00 C ATOM 224 CG ARG 21 -9.339 3.916 -4.409 1.00 0.00 C ATOM 225 CD ARG 21 -9.703 5.294 -4.959 1.00 0.00 C ATOM 226 NE ARG 21 -9.400 5.436 -6.387 1.00 0.00 N ATOM 228 CZ ARG 21 -9.618 6.533 -7.113 1.00 0.00 C ATOM 229 NH1 ARG 21 -9.301 6.538 -8.400 1.00 0.00 N ATOM 232 NH2 ARG 21 -10.148 7.625 -6.569 1.00 0.00 N ATOM 235 C ARG 21 -7.108 1.355 -4.973 1.00 0.00 C ATOM 236 O ARG 21 -5.954 1.195 -5.394 1.00 0.00 O ATOM 237 N CYS 22 -8.185 0.732 -5.478 1.00 0.00 N ATOM 239 CA CYS 22 -8.158 -0.225 -6.601 1.00 0.00 C ATOM 240 CB CYS 22 -8.889 -1.518 -6.210 1.00 0.00 C ATOM 241 SG CYS 22 -8.239 -2.333 -4.733 1.00 0.00 S ATOM 242 C CYS 22 -8.830 0.401 -7.838 1.00 0.00 C ATOM 243 O CYS 22 -9.546 1.401 -7.704 1.00 0.00 O ATOM 244 N ASP 23 -8.598 -0.190 -9.021 1.00 0.00 N ATOM 246 CA ASP 23 -9.164 0.284 -10.300 1.00 0.00 C ATOM 247 CB ASP 23 -8.109 0.202 -11.424 1.00 0.00 C ATOM 248 CG ASP 23 -6.931 1.144 -11.205 1.00 0.00 C ATOM 249 OD1 ASP 23 -5.930 0.719 -10.587 1.00 0.00 O ATOM 250 OD2 ASP 23 -6.996 2.305 -11.667 1.00 0.00 O ATOM 251 C ASP 23 -10.456 -0.459 -10.705 1.00 0.00 C ATOM 252 O ASP 23 -11.555 0.063 -10.481 1.00 0.00 O ATOM 253 N GLU 24 -10.316 -1.658 -11.292 1.00 0.00 N ATOM 255 CA GLU 24 -11.440 -2.505 -11.742 1.00 0.00 C ATOM 256 CB GLU 24 -11.610 -2.461 -13.284 1.00 0.00 C ATOM 257 CG GLU 24 -10.331 -2.595 -14.141 1.00 0.00 C ATOM 258 CD GLU 24 -10.616 -2.538 -15.629 1.00 0.00 C ATOM 259 OE1 GLU 24 -10.601 -1.426 -16.197 1.00 0.00 O ATOM 260 OE2 GLU 24 -10.852 -3.606 -16.232 1.00 0.00 O ATOM 261 C GLU 24 -11.306 -3.958 -11.248 1.00 0.00 C ATOM 262 O GLU 24 -12.314 -4.604 -10.939 1.00 0.00 O ATOM 263 N SER 25 -10.057 -4.441 -11.182 1.00 0.00 N ATOM 265 CA SER 25 -9.713 -5.806 -10.741 1.00 0.00 C ATOM 266 CB SER 25 -8.689 -6.423 -11.710 1.00 0.00 C ATOM 267 OG SER 25 -8.464 -7.797 -11.436 1.00 0.00 O ATOM 269 C SER 25 -9.162 -5.799 -9.300 1.00 0.00 C ATOM 270 O SER 25 -8.915 -4.723 -8.740 1.00 0.00 O ATOM 271 N ASN 26 -8.976 -6.997 -8.723 1.00 0.00 N ATOM 273 CA ASN 26 -8.459 -7.198 -7.354 1.00 0.00 C ATOM 274 CB ASN 26 -9.019 -8.505 -6.765 1.00 0.00 C ATOM 275 CG ASN 26 -10.529 -8.460 -6.550 1.00 0.00 C ATOM 276 OD1 ASN 26 -11.305 -8.829 -7.434 1.00 0.00 O ATOM 277 ND2 ASN 26 -10.948 -8.024 -5.366 1.00 0.00 N ATOM 280 C ASN 26 -6.918 -7.209 -7.309 1.00 0.00 C ATOM 281 O ASN 26 -6.274 -7.203 -8.365 1.00 0.00 O ATOM 282 N HIS 27 -6.347 -7.204 -6.088 1.00 0.00 N ATOM 284 CA HIS 27 -4.888 -7.209 -5.781 1.00 0.00 C ATOM 285 CG HIS 27 -2.993 -8.938 -5.556 1.00 0.00 C ATOM 286 CD2 HIS 27 -2.795 -10.051 -4.807 1.00 0.00 C ATOM 287 ND1 HIS 27 -1.815 -8.223 -5.493 1.00 0.00 N ATOM 289 CE1 HIS 27 -0.944 -8.872 -4.743 1.00 0.00 C ATOM 290 NE2 HIS 27 -1.513 -9.984 -4.313 1.00 0.00 N ATOM 292 C HIS 27 -4.157 -5.910 -6.212 1.00 0.00 C ATOM 293 O HIS 27 -2.929 -5.802 -6.064 1.00 0.00 O ATOM 294 CB HIS 27 -4.186 -8.478 -6.349 1.00 0.00 C ATOM 295 N CYS 28 -4.931 -4.924 -6.687 1.00 0.00 N ATOM 297 CA CYS 28 -4.412 -3.623 -7.144 1.00 0.00 C ATOM 298 CB CYS 28 -5.237 -3.090 -8.317 1.00 0.00 C ATOM 299 SG CYS 28 -5.249 -4.167 -9.770 1.00 0.00 S ATOM 300 C CYS 28 -4.356 -2.564 -6.032 1.00 0.00 C ATOM 301 O CYS 28 -5.375 -2.270 -5.389 1.00 0.00 O ATOM 302 N VAL 29 -3.148 -2.041 -5.790 1.00 0.00 N ATOM 304 CA VAL 29 -2.888 -1.008 -4.774 1.00 0.00 C ATOM 305 CB VAL 29 -2.058 -1.560 -3.537 1.00 0.00 C ATOM 306 CG1 VAL 29 -3.005 -2.178 -2.521 1.00 0.00 C ATOM 307 CG2 VAL 29 -1.039 -2.635 -3.971 1.00 0.00 C ATOM 308 C VAL 29 -2.218 0.238 -5.387 1.00 0.00 C ATOM 309 O VAL 29 -1.156 0.137 -6.012 1.00 0.00 O ATOM 310 N GLU 30 -2.895 1.387 -5.261 1.00 0.00 N ATOM 312 CA GLU 30 -2.418 2.696 -5.753 1.00 0.00 C ATOM 313 CB GLU 30 -3.371 3.294 -6.797 1.00 0.00 C ATOM 314 CG GLU 30 -3.518 2.491 -8.086 1.00 0.00 C ATOM 315 CD GLU 30 -4.562 3.075 -9.021 1.00 0.00 C ATOM 316 OE1 GLU 30 -5.762 2.784 -8.836 1.00 0.00 O ATOM 317 OE2 GLU 30 -4.182 3.828 -9.943 1.00 0.00 O ATOM 318 C GLU 30 -2.417 3.603 -4.529 1.00 0.00 C ATOM 319 O GLU 30 -3.337 3.512 -3.711 1.00 0.00 O ATOM 320 N VAL 31 -1.426 4.498 -4.422 1.00 0.00 N ATOM 322 CA VAL 31 -1.326 5.404 -3.268 1.00 0.00 C ATOM 323 CB VAL 31 0.023 5.227 -2.466 1.00 0.00 C ATOM 324 CG1 VAL 31 0.049 3.867 -1.786 1.00 0.00 C ATOM 325 CG2 VAL 31 1.258 5.368 -3.380 1.00 0.00 C ATOM 326 C VAL 31 -1.627 6.884 -3.567 1.00 0.00 C ATOM 327 O VAL 31 -1.084 7.464 -4.518 1.00 0.00 O ATOM 328 N ARG 32 -2.531 7.452 -2.757 1.00 0.00 N ATOM 330 CA ARG 32 -2.982 8.849 -2.846 1.00 0.00 C ATOM 331 CB ARG 32 -4.442 8.913 -3.336 1.00 0.00 C ATOM 332 CG ARG 32 -4.798 10.149 -4.182 1.00 0.00 C ATOM 333 CD ARG 32 -6.258 10.142 -4.632 1.00 0.00 C ATOM 334 NE ARG 32 -7.196 10.349 -3.524 1.00 0.00 N ATOM 336 CZ ARG 32 -8.524 10.387 -3.639 1.00 0.00 C ATOM 337 NH1 ARG 32 -9.269 10.582 -2.559 1.00 0.00 N ATOM 340 NH2 ARG 32 -9.118 10.233 -4.818 1.00 0.00 N ATOM 343 C ARG 32 -2.864 9.448 -1.434 1.00 0.00 C ATOM 344 O ARG 32 -3.340 8.843 -0.458 1.00 0.00 O ATOM 345 N CYS 33 -2.158 10.584 -1.337 1.00 0.00 N ATOM 347 CA CYS 33 -1.915 11.343 -0.090 1.00 0.00 C ATOM 348 CB CYS 33 -1.014 10.552 0.885 1.00 0.00 C ATOM 349 SG CYS 33 -0.492 11.418 2.384 1.00 0.00 S ATOM 350 C CYS 33 -1.255 12.689 -0.441 1.00 0.00 C ATOM 351 O CYS 33 -1.919 13.733 -0.408 1.00 0.00 O ATOM 352 N SER 34 0.044 12.642 -0.773 1.00 0.00 N ATOM 354 CA SER 34 0.862 13.810 -1.130 1.00 0.00 C ATOM 355 CB SER 34 1.955 14.027 -0.072 1.00 0.00 C ATOM 356 OG SER 34 1.391 14.252 1.209 1.00 0.00 O ATOM 358 C SER 34 1.506 13.598 -2.508 1.00 0.00 C ATOM 359 O SER 34 1.684 14.562 -3.264 1.00 0.00 O ATOM 360 N ASP 35 1.842 12.336 -2.815 1.00 0.00 N ATOM 362 CA ASP 35 2.474 11.926 -4.084 1.00 0.00 C ATOM 363 CB ASP 35 3.835 11.249 -3.809 1.00 0.00 C ATOM 364 CG ASP 35 4.864 12.205 -3.211 1.00 0.00 C ATOM 365 OD1 ASP 35 5.612 12.843 -3.985 1.00 0.00 O ATOM 366 OD2 ASP 35 4.936 12.307 -1.966 1.00 0.00 O ATOM 367 C ASP 35 1.557 10.978 -4.885 1.00 0.00 C ATOM 368 O ASP 35 0.450 10.664 -4.430 1.00 0.00 O ATOM 369 N THR 36 2.028 10.536 -6.063 1.00 0.00 N ATOM 371 CA THR 36 1.304 9.624 -6.979 1.00 0.00 C ATOM 372 CB THR 36 1.733 9.865 -8.462 1.00 0.00 C ATOM 373 OG1 THR 36 3.162 9.859 -8.560 1.00 0.00 O ATOM 375 CG2 THR 36 1.191 11.196 -8.973 1.00 0.00 C ATOM 376 C THR 36 1.502 8.135 -6.595 1.00 0.00 C ATOM 377 O THR 36 2.147 7.852 -5.579 1.00 0.00 O ATOM 378 N LYS 37 0.948 7.209 -7.397 1.00 0.00 N ATOM 380 CA LYS 37 1.031 5.747 -7.176 1.00 0.00 C ATOM 381 CB LYS 37 0.003 4.992 -8.054 1.00 0.00 C ATOM 382 CG LYS 37 -0.035 5.360 -9.553 1.00 0.00 C ATOM 383 CD LYS 37 -1.042 4.509 -10.307 1.00 0.00 C ATOM 384 CE LYS 37 -1.078 4.873 -11.783 1.00 0.00 C ATOM 385 NZ LYS 37 -2.061 4.047 -12.535 1.00 0.00 N ATOM 389 C LYS 37 2.439 5.114 -7.300 1.00 0.00 C ATOM 390 O LYS 37 3.160 5.378 -8.272 1.00 0.00 O ATOM 391 N TYR 38 2.806 4.304 -6.296 1.00 0.00 N ATOM 393 CA TYR 38 4.103 3.608 -6.217 1.00 0.00 C ATOM 394 CB TYR 38 4.859 4.025 -4.933 1.00 0.00 C ATOM 395 CG TYR 38 5.358 5.472 -4.863 1.00 0.00 C ATOM 396 CD1 TYR 38 6.617 5.841 -5.401 1.00 0.00 C ATOM 397 CE1 TYR 38 7.101 7.174 -5.301 1.00 0.00 C ATOM 398 CD2 TYR 38 4.594 6.478 -4.224 1.00 0.00 C ATOM 399 CE2 TYR 38 5.070 7.814 -4.120 1.00 0.00 C ATOM 400 CZ TYR 38 6.320 8.150 -4.661 1.00 0.00 C ATOM 401 OH TYR 38 6.782 9.443 -4.561 1.00 0.00 O ATOM 403 C TYR 38 3.936 2.084 -6.216 1.00 0.00 C ATOM 404 O TYR 38 4.783 1.364 -6.759 1.00 0.00 O ATOM 405 N THR 39 2.835 1.615 -5.611 1.00 0.00 N ATOM 407 CA THR 39 2.489 0.185 -5.474 1.00 0.00 C ATOM 408 CB THR 39 1.604 -0.036 -4.211 1.00 0.00 C ATOM 409 OG1 THR 39 0.571 0.957 -4.165 1.00 0.00 O ATOM 411 CG2 THR 39 2.444 0.044 -2.940 1.00 0.00 C ATOM 412 C THR 39 1.853 -0.431 -6.748 1.00 0.00 C ATOM 413 O THR 39 2.071 0.101 -7.845 1.00 0.00 O ATOM 414 N LEU 40 1.112 -1.549 -6.599 1.00 0.00 N ATOM 416 CA LEU 40 0.417 -2.330 -7.662 1.00 0.00 C ATOM 417 CB LEU 40 -0.452 -1.437 -8.603 1.00 0.00 C ATOM 418 CG LEU 40 -1.641 -1.916 -9.471 1.00 0.00 C ATOM 419 CD1 LEU 40 -2.625 -0.771 -9.632 1.00 0.00 C ATOM 420 CD2 LEU 40 -1.201 -2.440 -10.849 1.00 0.00 C ATOM 421 C LEU 40 1.396 -3.214 -8.468 1.00 0.00 C ATOM 422 O LEU 40 2.473 -2.751 -8.867 1.00 0.00 O ATOM 423 N CYS 41 1.001 -4.477 -8.681 1.00 0.00 N ATOM 425 CA CYS 41 1.785 -5.484 -9.418 1.00 0.00 C ATOM 426 CB CYS 41 1.890 -6.775 -8.592 1.00 0.00 C ATOM 427 SG CYS 41 3.008 -8.033 -9.265 1.00 0.00 S ATOM 428 C CYS 41 1.156 -5.776 -10.784 1.00 0.00 C ATOM 429 O CYS 41 1.915 -6.073 -11.731 1.00 0.00 O ATOM 430 OXT CYS 41 -0.087 -5.695 -10.888 1.00 0.00 O TER END