####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS381_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS381_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 4.99 4.99 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 18 - 34 1.95 6.45 LCS_AVERAGE: 27.13 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 27 - 33 0.56 7.19 LCS_AVERAGE: 12.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 5 41 0 3 3 5 5 5 7 9 11 13 16 17 19 24 33 36 38 39 39 41 LCS_GDT Q 2 Q 2 3 5 41 3 3 4 5 5 5 7 11 19 20 21 30 33 35 37 39 40 40 40 41 LCS_GDT E 3 E 3 3 5 41 3 3 4 5 5 5 7 9 11 15 16 25 26 31 34 36 40 40 40 41 LCS_GDT T 4 T 4 3 5 41 3 3 4 5 5 5 9 14 19 20 24 30 33 35 37 39 40 40 40 41 LCS_GDT R 5 R 5 3 5 41 3 3 4 5 5 5 14 17 25 29 31 35 35 37 37 39 40 40 40 41 LCS_GDT K 6 K 6 4 4 41 4 9 13 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT K 7 K 7 4 5 41 3 7 13 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT C 8 C 8 4 5 41 3 4 8 16 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT T 9 T 9 4 5 41 3 4 8 13 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT E 10 E 10 4 5 41 3 3 4 6 7 13 24 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT M 11 M 11 4 5 41 3 4 8 13 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT K 12 K 12 4 5 41 3 3 4 8 9 13 18 22 28 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT K 13 K 13 4 5 41 3 3 4 8 9 13 17 22 28 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT K 14 K 14 4 5 41 3 3 4 8 9 13 17 22 28 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT F 15 F 15 4 5 41 3 3 4 4 5 8 12 17 22 31 34 36 36 37 37 39 40 40 40 41 LCS_GDT K 16 K 16 4 5 41 3 3 4 4 5 8 15 20 26 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT N 17 N 17 3 8 41 3 4 12 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT C 18 C 18 6 17 41 3 8 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT E 19 E 19 6 17 41 3 8 14 16 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT V 20 V 20 6 17 41 4 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT R 21 R 21 6 17 41 4 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT C 22 C 22 6 17 41 4 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT D 23 D 23 6 17 41 4 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT E 24 E 24 5 17 41 3 4 5 5 10 13 20 23 27 30 31 36 36 37 37 39 40 40 40 41 LCS_GDT S 25 S 25 5 17 41 3 4 10 14 19 22 28 29 30 31 34 36 36 37 37 39 40 40 40 41 LCS_GDT N 26 N 26 5 17 41 3 4 11 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT H 27 H 27 7 17 41 4 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT C 28 C 28 7 17 41 5 8 12 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT V 29 V 29 7 17 41 5 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT E 30 E 30 7 17 41 3 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT V 31 V 31 7 17 41 5 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT R 32 R 32 7 17 41 5 8 14 15 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT C 33 C 33 7 17 41 5 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT S 34 S 34 6 17 41 4 6 13 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT D 35 D 35 6 14 41 4 5 7 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT T 36 T 36 6 14 41 4 5 8 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT K 37 K 37 6 14 41 4 6 10 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT Y 38 Y 38 6 14 41 3 5 10 17 20 26 28 29 30 31 34 36 36 37 37 39 40 40 40 41 LCS_GDT T 39 T 39 6 14 41 3 5 10 17 20 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT L 40 L 40 4 5 41 3 4 14 15 21 25 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_GDT C 41 C 41 4 5 41 3 8 14 15 20 25 28 29 30 32 34 36 36 37 37 39 40 40 40 41 LCS_AVERAGE LCS_A: 46.46 ( 12.25 27.13 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 9 14 18 21 26 28 29 30 32 34 36 36 37 37 39 40 40 40 41 GDT PERCENT_AT 12.20 21.95 34.15 43.90 51.22 63.41 68.29 70.73 73.17 78.05 82.93 87.80 87.80 90.24 90.24 95.12 97.56 97.56 97.56 100.00 GDT RMS_LOCAL 0.31 0.56 1.02 1.46 1.69 2.01 2.18 2.28 2.46 3.24 3.38 3.67 3.67 3.78 3.78 4.33 4.60 4.60 4.60 4.99 GDT RMS_ALL_AT 7.38 6.42 6.80 5.64 5.61 5.53 5.61 5.72 5.61 5.38 5.40 5.43 5.43 5.39 5.39 5.11 5.03 5.03 5.03 4.99 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 17.465 0 0.645 0.601 20.057 0.000 0.000 20.057 LGA Q 2 Q 2 12.043 0 0.627 1.024 14.181 0.000 0.000 8.210 LGA E 3 E 3 12.054 0 0.023 1.107 16.167 0.000 0.000 16.104 LGA T 4 T 4 9.844 0 0.596 0.555 10.797 0.000 0.000 9.428 LGA R 5 R 5 6.168 0 0.016 1.186 14.035 1.818 0.661 14.035 LGA K 6 K 6 1.910 0 0.571 1.484 12.733 48.636 21.818 12.733 LGA K 7 K 7 1.601 0 0.016 0.720 6.306 47.727 29.899 6.306 LGA C 8 C 8 2.599 0 0.582 0.845 3.476 48.636 41.818 2.441 LGA T 9 T 9 3.220 0 0.015 0.951 6.730 16.364 14.026 6.730 LGA E 10 E 10 5.714 0 0.034 0.810 11.315 0.909 0.404 11.315 LGA M 11 M 11 2.968 0 0.197 0.259 4.689 11.364 33.864 1.026 LGA K 12 K 12 7.616 0 0.632 1.042 17.003 0.000 0.000 17.003 LGA K 13 K 13 8.746 0 0.155 0.598 11.548 0.000 0.000 11.548 LGA K 14 K 14 9.194 0 0.593 0.797 14.139 0.000 0.000 14.139 LGA F 15 F 15 9.305 0 0.566 0.673 10.556 0.000 0.000 9.492 LGA K 16 K 16 9.004 0 0.339 1.378 16.315 0.000 0.000 16.315 LGA N 17 N 17 1.691 0 0.612 1.408 6.934 50.909 30.682 4.577 LGA C 18 C 18 1.408 0 0.180 0.946 4.168 66.818 53.939 4.168 LGA E 19 E 19 2.489 0 0.271 0.863 7.074 44.545 22.020 5.288 LGA V 20 V 20 1.213 0 0.112 0.957 3.308 61.818 54.545 1.074 LGA R 21 R 21 0.868 0 0.080 1.069 5.643 86.364 50.083 3.263 LGA C 22 C 22 1.442 0 0.023 0.149 2.046 65.455 58.485 2.046 LGA D 23 D 23 1.525 0 0.299 1.128 5.842 34.091 20.682 5.133 LGA E 24 E 24 6.295 0 0.110 0.578 13.248 2.727 1.212 13.248 LGA S 25 S 25 4.006 0 0.594 0.549 6.507 15.000 10.000 6.507 LGA N 26 N 26 2.100 0 0.253 0.857 8.897 43.182 22.273 7.165 LGA H 27 H 27 1.147 0 0.414 1.188 7.955 50.000 26.727 6.718 LGA C 28 C 28 1.768 0 0.053 0.066 4.334 62.273 45.455 4.334 LGA V 29 V 29 0.511 0 0.094 0.194 1.600 73.636 68.052 1.324 LGA E 30 E 30 1.150 0 0.019 0.780 3.315 65.455 52.525 3.315 LGA V 31 V 31 1.201 0 0.029 0.068 2.397 55.000 53.247 1.634 LGA R 32 R 32 2.693 0 0.060 1.359 6.632 38.636 15.537 6.632 LGA C 33 C 33 1.396 0 0.035 0.842 2.774 74.545 62.727 2.774 LGA S 34 S 34 1.625 0 0.411 0.840 5.383 52.727 38.182 5.383 LGA D 35 D 35 2.665 0 0.056 0.192 3.697 30.909 21.818 3.697 LGA T 36 T 36 2.402 0 0.108 1.203 4.665 44.545 35.584 4.665 LGA K 37 K 37 2.478 0 0.164 0.950 4.678 30.455 18.182 4.678 LGA Y 38 Y 38 3.344 0 0.548 1.302 6.171 16.364 9.242 6.171 LGA T 39 T 39 3.157 0 0.470 0.748 7.002 50.000 28.571 6.335 LGA L 40 L 40 3.431 0 0.056 1.317 10.247 23.636 11.818 8.800 LGA C 41 C 41 3.115 0 0.488 1.019 6.589 11.364 22.078 2.911 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 4.986 4.932 6.225 32.339 23.809 10.776 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 29 2.28 57.927 53.615 1.217 LGA_LOCAL RMSD: 2.283 Number of atoms: 29 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.718 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 4.986 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.128678 * X + 0.374769 * Y + 0.918145 * Z + -0.165876 Y_new = 0.625101 * X + 0.688095 * Y + -0.368475 * Z + 0.940100 Z_new = -0.769864 * X + 0.621348 * Y + -0.145726 * Z + 0.053690 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.367781 0.878628 1.801165 [DEG: 78.3681 50.3417 103.1991 ] ZXZ: 1.189148 1.717043 -0.891748 [DEG: 68.1332 98.3793 -51.0934 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS381_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS381_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 29 2.28 53.615 4.99 REMARK ---------------------------------------------------------- MOLECULE T0955TS381_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 CB SER 1 -0.732 -14.468 17.970 1.00 0.00 C ATOM 2 OG SER 1 -0.332 -15.362 18.995 1.00 0.00 O ATOM 4 C SER 1 -2.006 -14.185 15.824 1.00 0.00 C ATOM 5 O SER 1 -3.109 -13.637 15.940 1.00 0.00 O ATOM 8 N SER 1 -0.707 -16.267 16.265 1.00 0.00 N ATOM 10 CA SER 1 -1.533 -15.191 16.883 1.00 0.00 C ATOM 11 N GLN 2 -1.167 -13.962 14.803 1.00 0.00 N ATOM 13 CA GLN 2 -1.444 -13.032 13.690 1.00 0.00 C ATOM 14 CB GLN 2 -0.253 -12.070 13.454 1.00 0.00 C ATOM 15 CG GLN 2 1.159 -12.694 13.407 1.00 0.00 C ATOM 16 CD GLN 2 2.244 -11.662 13.170 1.00 0.00 C ATOM 17 OE1 GLN 2 2.600 -11.368 12.029 1.00 0.00 O ATOM 18 NE2 GLN 2 2.778 -11.104 14.251 1.00 0.00 N ATOM 21 C GLN 2 -1.856 -13.737 12.381 1.00 0.00 C ATOM 22 O GLN 2 -1.372 -14.838 12.093 1.00 0.00 O ATOM 23 N GLU 3 -2.743 -13.089 11.614 1.00 0.00 N ATOM 25 CA GLU 3 -3.259 -13.601 10.329 1.00 0.00 C ATOM 26 CB GLU 3 -4.794 -13.535 10.290 1.00 0.00 C ATOM 27 CG GLU 3 -5.499 -14.501 11.238 1.00 0.00 C ATOM 28 CD GLU 3 -7.012 -14.397 11.162 1.00 0.00 C ATOM 29 OE1 GLU 3 -7.593 -13.594 11.922 1.00 0.00 O ATOM 30 OE2 GLU 3 -7.619 -15.120 10.345 1.00 0.00 O ATOM 31 C GLU 3 -2.677 -12.825 9.136 1.00 0.00 C ATOM 32 O GLU 3 -2.443 -13.410 8.071 1.00 0.00 O ATOM 33 N THR 4 -2.448 -11.517 9.334 1.00 0.00 N ATOM 35 CA THR 4 -1.894 -10.605 8.312 1.00 0.00 C ATOM 36 CB THR 4 -2.708 -9.242 8.239 1.00 0.00 C ATOM 37 OG1 THR 4 -2.082 -8.340 7.315 1.00 0.00 O ATOM 39 CG2 THR 4 -2.852 -8.565 9.621 1.00 0.00 C ATOM 40 C THR 4 -0.375 -10.361 8.490 1.00 0.00 C ATOM 41 O THR 4 0.114 -10.292 9.625 1.00 0.00 O ATOM 42 N ARG 5 0.344 -10.253 7.361 1.00 0.00 N ATOM 44 CA ARG 5 1.801 -10.020 7.326 1.00 0.00 C ATOM 45 CB ARG 5 2.497 -11.054 6.427 1.00 0.00 C ATOM 46 CG ARG 5 2.490 -12.485 6.970 1.00 0.00 C ATOM 47 CD ARG 5 3.195 -13.464 6.032 1.00 0.00 C ATOM 48 NE ARG 5 4.646 -13.255 5.977 1.00 0.00 N ATOM 50 CZ ARG 5 5.496 -13.970 5.240 1.00 0.00 C ATOM 51 NH1 ARG 5 5.071 -14.965 4.468 1.00 0.00 N ATOM 54 NH2 ARG 5 6.791 -13.684 5.274 1.00 0.00 N ATOM 57 C ARG 5 2.137 -8.603 6.839 1.00 0.00 C ATOM 58 O ARG 5 3.110 -8.001 7.309 1.00 0.00 O ATOM 59 N LYS 6 1.313 -8.082 5.911 1.00 0.00 N ATOM 61 CA LYS 6 1.423 -6.736 5.278 1.00 0.00 C ATOM 62 CB LYS 6 1.075 -5.600 6.265 1.00 0.00 C ATOM 63 CG LYS 6 -0.388 -5.552 6.690 1.00 0.00 C ATOM 64 CD LYS 6 -0.647 -4.395 7.650 1.00 0.00 C ATOM 65 CE LYS 6 -2.109 -4.321 8.084 1.00 0.00 C ATOM 66 NZ LYS 6 -2.530 -5.453 8.964 1.00 0.00 N ATOM 70 C LYS 6 2.746 -6.413 4.553 1.00 0.00 C ATOM 71 O LYS 6 3.828 -6.753 5.048 1.00 0.00 O ATOM 72 N LYS 7 2.634 -5.761 3.387 1.00 0.00 N ATOM 74 CA LYS 7 3.779 -5.364 2.546 1.00 0.00 C ATOM 75 CB LYS 7 3.565 -5.804 1.089 1.00 0.00 C ATOM 76 CG LYS 7 3.610 -7.312 0.863 1.00 0.00 C ATOM 77 CD LYS 7 3.389 -7.660 -0.604 1.00 0.00 C ATOM 78 CE LYS 7 3.432 -9.166 -0.853 1.00 0.00 C ATOM 79 NZ LYS 7 2.275 -9.902 -0.259 1.00 0.00 N ATOM 83 C LYS 7 4.022 -3.847 2.598 1.00 0.00 C ATOM 84 O LYS 7 5.175 -3.402 2.539 1.00 0.00 O ATOM 85 N CYS 8 2.930 -3.076 2.711 1.00 0.00 N ATOM 87 CA CYS 8 2.959 -1.603 2.777 1.00 0.00 C ATOM 88 CB CYS 8 1.942 -1.005 1.792 1.00 0.00 C ATOM 89 SG CYS 8 0.282 -1.712 1.919 1.00 0.00 S ATOM 90 C CYS 8 2.704 -1.069 4.198 1.00 0.00 C ATOM 91 O CYS 8 1.680 -1.395 4.816 1.00 0.00 O ATOM 92 N THR 9 3.668 -0.291 4.714 1.00 0.00 N ATOM 94 CA THR 9 3.609 0.322 6.055 1.00 0.00 C ATOM 95 CB THR 9 4.759 -0.187 6.990 1.00 0.00 C ATOM 96 OG1 THR 9 6.019 -0.072 6.316 1.00 0.00 O ATOM 98 CG2 THR 9 4.527 -1.638 7.393 1.00 0.00 C ATOM 99 C THR 9 3.652 1.859 5.973 1.00 0.00 C ATOM 100 O THR 9 2.845 2.533 6.625 1.00 0.00 O ATOM 101 N GLU 10 4.586 2.396 5.168 1.00 0.00 N ATOM 103 CA GLU 10 4.775 3.847 4.970 1.00 0.00 C ATOM 104 CB GLU 10 6.088 4.329 5.616 1.00 0.00 C ATOM 105 CG GLU 10 6.096 4.317 7.143 1.00 0.00 C ATOM 106 CD GLU 10 7.411 4.800 7.726 1.00 0.00 C ATOM 107 OE1 GLU 10 7.544 6.019 7.968 1.00 0.00 O ATOM 108 OE2 GLU 10 8.309 3.961 7.948 1.00 0.00 O ATOM 109 C GLU 10 4.771 4.237 3.486 1.00 0.00 C ATOM 110 O GLU 10 4.228 5.289 3.129 1.00 0.00 O ATOM 111 N MET 11 5.366 3.379 2.635 1.00 0.00 N ATOM 113 CA MET 11 5.502 3.547 1.160 1.00 0.00 C ATOM 114 CG MET 11 3.773 1.821 0.286 1.00 0.00 C ATOM 115 SD MET 11 4.724 0.867 -0.929 1.00 0.00 S ATOM 116 CE MET 11 5.762 -0.128 0.146 1.00 0.00 C ATOM 117 C MET 11 6.138 4.863 0.670 1.00 0.00 C ATOM 118 O MET 11 7.259 4.846 0.145 1.00 0.00 O ATOM 119 CB MET 11 4.172 3.287 0.414 1.00 0.00 C ATOM 120 N LYS 12 5.420 5.981 0.849 1.00 0.00 N ATOM 122 CA LYS 12 5.869 7.323 0.444 1.00 0.00 C ATOM 123 CB LYS 12 4.838 7.987 -0.484 1.00 0.00 C ATOM 124 CG LYS 12 4.834 7.456 -1.910 1.00 0.00 C ATOM 125 CD LYS 12 3.954 8.309 -2.817 1.00 0.00 C ATOM 126 CE LYS 12 3.953 7.811 -4.260 1.00 0.00 C ATOM 127 NZ LYS 12 5.262 7.996 -4.956 1.00 0.00 N ATOM 131 C LYS 12 6.159 8.231 1.649 1.00 0.00 C ATOM 132 O LYS 12 5.372 8.275 2.606 1.00 0.00 O ATOM 133 N LYS 13 7.307 8.921 1.595 1.00 0.00 N ATOM 135 CA LYS 13 7.774 9.856 2.637 1.00 0.00 C ATOM 136 CB LYS 13 9.214 9.521 3.062 1.00 0.00 C ATOM 137 CG LYS 13 9.366 8.210 3.827 1.00 0.00 C ATOM 138 CD LYS 13 10.816 7.957 4.207 1.00 0.00 C ATOM 139 CE LYS 13 10.967 6.651 4.969 1.00 0.00 C ATOM 140 NZ LYS 13 12.384 6.389 5.347 1.00 0.00 N ATOM 144 C LYS 13 7.704 11.297 2.096 1.00 0.00 C ATOM 145 O LYS 13 7.772 12.264 2.869 1.00 0.00 O ATOM 146 N LYS 14 7.527 11.407 0.772 1.00 0.00 N ATOM 148 CA LYS 14 7.432 12.683 0.037 1.00 0.00 C ATOM 149 CB LYS 14 8.159 12.565 -1.314 1.00 0.00 C ATOM 150 CG LYS 14 9.677 12.457 -1.217 1.00 0.00 C ATOM 151 CD LYS 14 10.312 12.344 -2.594 1.00 0.00 C ATOM 152 CE LYS 14 11.825 12.236 -2.497 1.00 0.00 C ATOM 153 NZ LYS 14 12.461 12.126 -3.839 1.00 0.00 N ATOM 157 C LYS 14 5.963 13.102 -0.176 1.00 0.00 C ATOM 158 O LYS 14 5.058 12.464 0.374 1.00 0.00 O ATOM 159 N PHE 15 5.744 14.171 -0.965 1.00 0.00 N ATOM 161 CA PHE 15 4.423 14.761 -1.313 1.00 0.00 C ATOM 162 CB PHE 15 3.552 13.785 -2.173 1.00 0.00 C ATOM 163 CG PHE 15 4.180 13.374 -3.504 1.00 0.00 C ATOM 164 CD1 PHE 15 3.978 14.148 -4.672 1.00 0.00 C ATOM 165 CD2 PHE 15 4.948 12.189 -3.604 1.00 0.00 C ATOM 166 CE1 PHE 15 4.532 13.751 -5.922 1.00 0.00 C ATOM 167 CE2 PHE 15 5.507 11.779 -4.846 1.00 0.00 C ATOM 168 CZ PHE 15 5.299 12.563 -6.008 1.00 0.00 C ATOM 169 C PHE 15 3.630 15.346 -0.119 1.00 0.00 C ATOM 170 O PHE 15 3.845 16.510 0.239 1.00 0.00 O ATOM 171 N LYS 16 2.731 14.546 0.481 1.00 0.00 N ATOM 173 CA LYS 16 1.899 14.949 1.634 1.00 0.00 C ATOM 174 CB LYS 16 0.441 15.236 1.209 1.00 0.00 C ATOM 175 CG LYS 16 0.244 16.514 0.401 1.00 0.00 C ATOM 176 CD LYS 16 -1.217 16.713 0.028 1.00 0.00 C ATOM 177 CE LYS 16 -1.412 17.987 -0.777 1.00 0.00 C ATOM 178 NZ LYS 16 -2.839 18.195 -1.149 1.00 0.00 N ATOM 182 C LYS 16 1.942 13.884 2.749 1.00 0.00 C ATOM 183 O LYS 16 2.753 14.003 3.676 1.00 0.00 O ATOM 184 N ASN 17 1.077 12.857 2.655 1.00 0.00 N ATOM 186 CA ASN 17 0.964 11.747 3.629 1.00 0.00 C ATOM 187 CB ASN 17 0.091 12.145 4.841 1.00 0.00 C ATOM 188 CG ASN 17 -1.195 12.890 4.451 1.00 0.00 C ATOM 189 OD1 ASN 17 -1.215 14.119 4.369 1.00 0.00 O ATOM 190 ND2 ASN 17 -2.269 12.140 4.225 1.00 0.00 N ATOM 193 C ASN 17 0.408 10.458 3.000 1.00 0.00 C ATOM 194 O ASN 17 -0.750 10.435 2.566 1.00 0.00 O ATOM 195 N CYS 18 1.210 9.386 3.000 1.00 0.00 N ATOM 197 CA CYS 18 0.812 8.091 2.419 1.00 0.00 C ATOM 198 CB CYS 18 2.036 7.328 1.887 1.00 0.00 C ATOM 199 SG CYS 18 1.749 5.632 1.293 1.00 0.00 S ATOM 200 C CYS 18 -0.049 7.180 3.311 1.00 0.00 C ATOM 201 O CYS 18 0.377 6.751 4.394 1.00 0.00 O ATOM 202 N GLU 19 -1.283 6.955 2.845 1.00 0.00 N ATOM 204 CA GLU 19 -2.278 6.068 3.471 1.00 0.00 C ATOM 205 CB GLU 19 -3.617 6.792 3.689 1.00 0.00 C ATOM 206 CG GLU 19 -3.582 7.897 4.741 1.00 0.00 C ATOM 207 CD GLU 19 -4.926 8.579 4.919 1.00 0.00 C ATOM 208 OE1 GLU 19 -5.186 9.578 4.215 1.00 0.00 O ATOM 209 OE2 GLU 19 -5.721 8.120 5.766 1.00 0.00 O ATOM 210 C GLU 19 -2.424 4.998 2.383 1.00 0.00 C ATOM 211 O GLU 19 -2.630 5.345 1.212 1.00 0.00 O ATOM 212 N VAL 20 -2.302 3.718 2.756 1.00 0.00 N ATOM 214 CA VAL 20 -2.381 2.615 1.785 1.00 0.00 C ATOM 215 CB VAL 20 -1.065 1.718 1.753 1.00 0.00 C ATOM 216 CG1 VAL 20 0.065 2.472 1.066 1.00 0.00 C ATOM 217 CG2 VAL 20 -0.623 1.313 3.177 1.00 0.00 C ATOM 218 C VAL 20 -3.636 1.737 1.850 1.00 0.00 C ATOM 219 O VAL 20 -4.147 1.441 2.937 1.00 0.00 O ATOM 220 N ARG 21 -4.143 1.395 0.657 1.00 0.00 N ATOM 222 CA ARG 21 -5.325 0.544 0.452 1.00 0.00 C ATOM 223 CB ARG 21 -6.327 1.214 -0.503 1.00 0.00 C ATOM 224 CG ARG 21 -7.057 2.426 0.076 1.00 0.00 C ATOM 225 CD ARG 21 -8.089 2.993 -0.898 1.00 0.00 C ATOM 226 NE ARG 21 -7.477 3.641 -2.063 1.00 0.00 N ATOM 228 CZ ARG 21 -8.147 4.216 -3.063 1.00 0.00 C ATOM 229 NH1 ARG 21 -7.478 4.770 -4.065 1.00 0.00 N ATOM 232 NH2 ARG 21 -9.477 4.244 -3.074 1.00 0.00 N ATOM 235 C ARG 21 -4.812 -0.763 -0.163 1.00 0.00 C ATOM 236 O ARG 21 -3.908 -0.728 -1.014 1.00 0.00 O ATOM 237 N CYS 22 -5.349 -1.893 0.319 1.00 0.00 N ATOM 239 CA CYS 22 -4.978 -3.246 -0.130 1.00 0.00 C ATOM 240 CB CYS 22 -4.603 -4.120 1.075 1.00 0.00 C ATOM 241 SG CYS 22 -3.206 -3.498 2.042 1.00 0.00 S ATOM 242 C CYS 22 -6.089 -3.933 -0.936 1.00 0.00 C ATOM 243 O CYS 22 -7.274 -3.648 -0.728 1.00 0.00 O ATOM 244 N ASP 23 -5.678 -4.843 -1.838 1.00 0.00 N ATOM 246 CA ASP 23 -6.521 -5.661 -2.752 1.00 0.00 C ATOM 247 CB ASP 23 -6.645 -7.128 -2.250 1.00 0.00 C ATOM 248 CG ASP 23 -7.155 -7.239 -0.807 1.00 0.00 C ATOM 249 OD1 ASP 23 -6.320 -7.250 0.124 1.00 0.00 O ATOM 250 OD2 ASP 23 -8.387 -7.329 -0.613 1.00 0.00 O ATOM 251 C ASP 23 -7.883 -5.135 -3.275 1.00 0.00 C ATOM 252 O ASP 23 -8.829 -4.949 -2.496 1.00 0.00 O ATOM 253 N GLU 24 -7.936 -4.874 -4.589 1.00 0.00 N ATOM 255 CA GLU 24 -9.133 -4.391 -5.305 1.00 0.00 C ATOM 256 CB GLU 24 -8.896 -2.971 -5.864 1.00 0.00 C ATOM 257 CG GLU 24 -10.151 -2.095 -5.982 1.00 0.00 C ATOM 258 CD GLU 24 -9.851 -0.715 -6.537 1.00 0.00 C ATOM 259 OE1 GLU 24 -9.900 -0.546 -7.775 1.00 0.00 O ATOM 260 OE2 GLU 24 -9.569 0.202 -5.736 1.00 0.00 O ATOM 261 C GLU 24 -9.363 -5.403 -6.446 1.00 0.00 C ATOM 262 O GLU 24 -10.495 -5.851 -6.664 1.00 0.00 O ATOM 263 N SER 25 -8.274 -5.738 -7.157 1.00 0.00 N ATOM 265 CA SER 25 -8.250 -6.701 -8.272 1.00 0.00 C ATOM 266 CB SER 25 -8.228 -5.979 -9.634 1.00 0.00 C ATOM 267 OG SER 25 -9.374 -5.161 -9.796 1.00 0.00 O ATOM 269 C SER 25 -6.990 -7.569 -8.091 1.00 0.00 C ATOM 270 O SER 25 -5.876 -7.146 -8.435 1.00 0.00 O ATOM 271 N ASN 26 -7.178 -8.766 -7.505 1.00 0.00 N ATOM 273 CA ASN 26 -6.131 -9.780 -7.197 1.00 0.00 C ATOM 274 CB ASN 26 -5.548 -10.416 -8.489 1.00 0.00 C ATOM 275 CG ASN 26 -5.084 -11.861 -8.290 1.00 0.00 C ATOM 276 OD1 ASN 26 -3.926 -12.114 -7.955 1.00 0.00 O ATOM 277 ND2 ASN 26 -5.989 -12.810 -8.512 1.00 0.00 N ATOM 280 C ASN 26 -5.011 -9.248 -6.260 1.00 0.00 C ATOM 281 O ASN 26 -4.928 -9.672 -5.101 1.00 0.00 O ATOM 282 N HIS 27 -4.173 -8.334 -6.776 1.00 0.00 N ATOM 284 CA HIS 27 -3.059 -7.703 -6.037 1.00 0.00 C ATOM 285 CG HIS 27 -1.527 -8.666 -7.875 1.00 0.00 C ATOM 286 CD2 HIS 27 -1.370 -9.858 -8.502 1.00 0.00 C ATOM 287 ND1 HIS 27 -1.511 -7.709 -8.868 1.00 0.00 N ATOM 289 CE1 HIS 27 -1.352 -8.295 -10.042 1.00 0.00 C ATOM 290 NE2 HIS 27 -1.264 -9.598 -9.848 1.00 0.00 N ATOM 292 C HIS 27 -3.039 -6.175 -6.240 1.00 0.00 C ATOM 293 O HIS 27 -2.825 -5.698 -7.364 1.00 0.00 O ATOM 294 CB HIS 27 -1.685 -8.330 -6.416 1.00 0.00 C ATOM 295 N CYS 28 -3.314 -5.426 -5.161 1.00 0.00 N ATOM 297 CA CYS 28 -3.332 -3.949 -5.176 1.00 0.00 C ATOM 298 CB CYS 28 -4.749 -3.394 -5.370 1.00 0.00 C ATOM 299 SG CYS 28 -5.548 -3.906 -6.910 1.00 0.00 S ATOM 300 C CYS 28 -2.748 -3.296 -3.928 1.00 0.00 C ATOM 301 O CYS 28 -3.025 -3.724 -2.799 1.00 0.00 O ATOM 302 N VAL 29 -1.894 -2.291 -4.160 1.00 0.00 N ATOM 304 CA VAL 29 -1.254 -1.464 -3.122 1.00 0.00 C ATOM 305 CB VAL 29 0.288 -1.791 -2.915 1.00 0.00 C ATOM 306 CG1 VAL 29 0.852 -1.037 -1.705 1.00 0.00 C ATOM 307 CG2 VAL 29 0.517 -3.292 -2.728 1.00 0.00 C ATOM 308 C VAL 29 -1.460 -0.052 -3.721 1.00 0.00 C ATOM 309 O VAL 29 -1.005 0.227 -4.840 1.00 0.00 O ATOM 310 N GLU 30 -2.194 0.797 -2.993 1.00 0.00 N ATOM 312 CA GLU 30 -2.514 2.173 -3.411 1.00 0.00 C ATOM 313 CB GLU 30 -4.020 2.364 -3.610 1.00 0.00 C ATOM 314 CG GLU 30 -4.611 1.609 -4.798 1.00 0.00 C ATOM 315 CD GLU 30 -6.104 1.833 -4.950 1.00 0.00 C ATOM 316 OE1 GLU 30 -6.495 2.784 -5.659 1.00 0.00 O ATOM 317 OE2 GLU 30 -6.886 1.055 -4.364 1.00 0.00 O ATOM 318 C GLU 30 -2.061 3.167 -2.365 1.00 0.00 C ATOM 319 O GLU 30 -2.095 2.853 -1.177 1.00 0.00 O ATOM 320 N VAL 31 -1.637 4.353 -2.819 1.00 0.00 N ATOM 322 CA VAL 31 -1.186 5.451 -1.951 1.00 0.00 C ATOM 323 CB VAL 31 0.251 5.976 -2.363 1.00 0.00 C ATOM 324 CG1 VAL 31 0.706 7.137 -1.491 1.00 0.00 C ATOM 325 CG2 VAL 31 1.268 4.846 -2.273 1.00 0.00 C ATOM 326 C VAL 31 -2.240 6.575 -2.038 1.00 0.00 C ATOM 327 O VAL 31 -2.671 6.960 -3.135 1.00 0.00 O ATOM 328 N ARG 32 -2.680 7.030 -0.859 1.00 0.00 N ATOM 330 CA ARG 32 -3.656 8.116 -0.686 1.00 0.00 C ATOM 331 CB ARG 32 -4.828 7.682 0.214 1.00 0.00 C ATOM 332 CG ARG 32 -5.762 6.640 -0.403 1.00 0.00 C ATOM 333 CD ARG 32 -6.920 6.288 0.528 1.00 0.00 C ATOM 334 NE ARG 32 -7.884 7.383 0.680 1.00 0.00 N ATOM 336 CZ ARG 32 -8.983 7.340 1.434 1.00 0.00 C ATOM 337 NH1 ARG 32 -9.299 6.253 2.131 1.00 0.00 N ATOM 340 NH2 ARG 32 -9.779 8.400 1.489 1.00 0.00 N ATOM 343 C ARG 32 -2.824 9.224 -0.025 1.00 0.00 C ATOM 344 O ARG 32 -2.724 9.290 1.209 1.00 0.00 O ATOM 345 N CYS 33 -2.100 9.962 -0.880 1.00 0.00 N ATOM 347 CA CYS 33 -1.205 11.068 -0.501 1.00 0.00 C ATOM 348 CB CYS 33 0.263 10.585 -0.506 1.00 0.00 C ATOM 349 SG CYS 33 1.505 11.797 -0.007 1.00 0.00 S ATOM 350 C CYS 33 -1.368 12.215 -1.504 1.00 0.00 C ATOM 351 O CYS 33 -1.846 13.298 -1.147 1.00 0.00 O ATOM 352 N SER 34 -0.963 11.948 -2.753 1.00 0.00 N ATOM 354 CA SER 34 -1.000 12.894 -3.871 1.00 0.00 C ATOM 355 CB SER 34 0.444 13.262 -4.258 1.00 0.00 C ATOM 356 OG SER 34 1.222 12.107 -4.530 1.00 0.00 O ATOM 358 C SER 34 -1.778 12.265 -5.049 1.00 0.00 C ATOM 359 O SER 34 -2.589 11.358 -4.823 1.00 0.00 O ATOM 360 N ASP 35 -1.534 12.741 -6.280 1.00 0.00 N ATOM 362 CA ASP 35 -2.198 12.253 -7.507 1.00 0.00 C ATOM 363 CB ASP 35 -2.329 13.394 -8.545 1.00 0.00 C ATOM 364 CG ASP 35 -1.021 14.164 -8.776 1.00 0.00 C ATOM 365 OD1 ASP 35 -0.783 15.167 -8.070 1.00 0.00 O ATOM 366 OD2 ASP 35 -0.244 13.769 -9.674 1.00 0.00 O ATOM 367 C ASP 35 -1.571 10.992 -8.146 1.00 0.00 C ATOM 368 O ASP 35 -2.270 10.229 -8.827 1.00 0.00 O ATOM 369 N THR 36 -0.270 10.781 -7.896 1.00 0.00 N ATOM 371 CA THR 36 0.505 9.637 -8.422 1.00 0.00 C ATOM 372 CB THR 36 1.918 10.099 -8.985 1.00 0.00 C ATOM 373 OG1 THR 36 2.682 8.959 -9.401 1.00 0.00 O ATOM 375 CG2 THR 36 2.721 10.925 -7.956 1.00 0.00 C ATOM 376 C THR 36 0.642 8.467 -7.414 1.00 0.00 C ATOM 377 O THR 36 0.680 8.698 -6.199 1.00 0.00 O ATOM 378 N LYS 37 0.710 7.233 -7.939 1.00 0.00 N ATOM 380 CA LYS 37 0.848 5.994 -7.147 1.00 0.00 C ATOM 381 CB LYS 37 -0.097 4.886 -7.679 1.00 0.00 C ATOM 382 CG LYS 37 -0.119 4.651 -9.205 1.00 0.00 C ATOM 383 CD LYS 37 -1.094 3.541 -9.582 1.00 0.00 C ATOM 384 CE LYS 37 -1.131 3.292 -11.088 1.00 0.00 C ATOM 385 NZ LYS 37 0.127 2.694 -11.626 1.00 0.00 N ATOM 389 C LYS 37 2.309 5.497 -7.053 1.00 0.00 C ATOM 390 O LYS 37 3.154 5.921 -7.849 1.00 0.00 O ATOM 391 N TYR 38 2.582 4.607 -6.085 1.00 0.00 N ATOM 393 CA TYR 38 3.920 4.037 -5.845 1.00 0.00 C ATOM 394 CB TYR 38 4.226 4.030 -4.318 1.00 0.00 C ATOM 395 CG TYR 38 5.687 3.796 -3.885 1.00 0.00 C ATOM 396 CD1 TYR 38 6.606 4.871 -3.789 1.00 0.00 C ATOM 397 CE1 TYR 38 7.946 4.660 -3.362 1.00 0.00 C ATOM 398 CD2 TYR 38 6.146 2.501 -3.543 1.00 0.00 C ATOM 399 CE2 TYR 38 7.485 2.282 -3.114 1.00 0.00 C ATOM 400 CZ TYR 38 8.374 3.366 -3.029 1.00 0.00 C ATOM 401 OH TYR 38 9.670 3.160 -2.615 1.00 0.00 O ATOM 403 C TYR 38 4.081 2.622 -6.447 1.00 0.00 C ATOM 404 O TYR 38 4.944 2.419 -7.310 1.00 0.00 O ATOM 405 N THR 39 3.252 1.673 -5.988 1.00 0.00 N ATOM 407 CA THR 39 3.278 0.266 -6.431 1.00 0.00 C ATOM 408 CB THR 39 3.326 -0.703 -5.206 1.00 0.00 C ATOM 409 OG1 THR 39 2.739 -0.064 -4.066 1.00 0.00 O ATOM 411 CG2 THR 39 4.763 -1.085 -4.883 1.00 0.00 C ATOM 412 C THR 39 2.169 -0.124 -7.437 1.00 0.00 C ATOM 413 O THR 39 2.329 0.136 -8.634 1.00 0.00 O ATOM 414 N LEU 40 1.054 -0.709 -6.951 1.00 0.00 N ATOM 416 CA LEU 40 -0.122 -1.176 -7.736 1.00 0.00 C ATOM 417 CB LEU 40 -1.093 0.014 -8.058 1.00 0.00 C ATOM 418 CG LEU 40 -2.584 0.090 -8.519 1.00 0.00 C ATOM 419 CD1 LEU 40 -2.781 -0.362 -9.974 1.00 0.00 C ATOM 420 CD2 LEU 40 -3.550 -0.643 -7.575 1.00 0.00 C ATOM 421 C LEU 40 0.207 -2.023 -8.995 1.00 0.00 C ATOM 422 O LEU 40 0.755 -1.503 -9.978 1.00 0.00 O ATOM 423 N CYS 41 -0.114 -3.323 -8.929 1.00 0.00 N ATOM 425 CA CYS 41 0.119 -4.289 -10.018 1.00 0.00 C ATOM 426 CB CYS 41 0.938 -5.484 -9.508 1.00 0.00 C ATOM 427 SG CYS 41 2.566 -5.049 -8.854 1.00 0.00 S ATOM 428 C CYS 41 -1.196 -4.778 -10.625 1.00 0.00 C ATOM 429 O CYS 41 -2.192 -4.872 -9.875 1.00 0.00 O ATOM 430 OXT CYS 41 -1.219 -5.049 -11.845 1.00 0.00 O TER END