####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS377_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.37 1.37 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.37 1.37 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 2 - 20 0.98 1.98 LCS_AVERAGE: 41.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 4 4 4 10 37 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 19 41 41 10 14 23 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 19 41 41 10 14 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 19 41 41 11 14 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 19 41 41 11 18 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 19 41 41 11 18 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 19 41 41 11 18 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 19 41 41 11 21 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 19 41 41 11 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 19 41 41 11 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 19 41 41 11 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 19 41 41 11 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 19 41 41 11 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 19 41 41 11 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 19 41 41 7 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 19 41 41 6 14 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 19 41 41 7 15 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 19 41 41 7 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 19 41 41 9 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 19 41 41 7 19 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 18 41 41 5 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 18 41 41 9 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 18 41 41 9 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 16 41 41 5 14 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 16 41 41 6 12 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 16 41 41 7 18 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 16 41 41 6 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 16 41 41 6 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 16 41 41 9 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 16 41 41 9 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 16 41 41 9 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 16 41 41 8 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 16 41 41 6 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 15 41 41 4 4 5 34 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 15 41 41 6 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 15 41 41 9 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 15 41 41 8 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 15 41 41 7 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 15 41 41 3 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 15 41 41 3 17 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 15 41 41 3 3 26 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 80.51 ( 41.52 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 22 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 26.83 53.66 78.05 92.68 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.67 0.99 1.19 1.28 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 GDT RMS_ALL_AT 2.68 1.79 1.44 1.39 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 1.37 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.086 0 0.186 0.816 5.777 16.818 12.424 4.787 LGA Q 2 Q 2 2.227 0 0.233 1.196 5.449 48.182 30.101 5.449 LGA E 3 E 3 1.725 0 0.044 1.425 6.984 50.909 27.071 6.875 LGA T 4 T 4 1.673 0 0.036 1.124 3.799 50.909 47.273 3.799 LGA R 5 R 5 1.234 0 0.017 1.183 6.532 65.455 44.463 4.624 LGA K 6 K 6 0.989 0 0.015 1.259 6.674 73.636 43.636 6.443 LGA K 7 K 7 1.142 0 0.071 0.672 3.443 65.455 44.444 3.167 LGA C 8 C 8 1.250 0 0.041 0.756 4.006 65.455 55.455 4.006 LGA T 9 T 9 0.775 0 0.037 0.102 0.956 81.818 81.818 0.538 LGA E 10 E 10 0.308 0 0.035 0.986 5.447 90.909 53.131 5.447 LGA M 11 M 11 1.142 0 0.095 0.928 4.233 69.545 51.364 4.233 LGA K 12 K 12 1.471 0 0.042 0.628 1.890 61.818 62.424 1.890 LGA K 13 K 13 1.081 0 0.035 0.642 1.321 65.455 70.909 0.900 LGA K 14 K 14 0.844 0 0.072 0.613 2.656 81.818 75.758 2.656 LGA F 15 F 15 0.931 0 0.051 0.439 2.937 82.273 66.116 2.483 LGA K 16 K 16 1.667 0 0.649 1.092 3.349 50.000 44.444 3.220 LGA N 17 N 17 1.851 0 0.252 0.566 4.395 65.909 41.591 4.395 LGA C 18 C 18 1.068 0 0.036 0.036 1.410 69.545 68.182 1.321 LGA E 19 E 19 0.768 0 0.216 0.756 3.190 81.818 57.778 2.705 LGA V 20 V 20 1.427 0 0.043 0.054 1.834 58.182 57.143 1.403 LGA R 21 R 21 1.473 0 0.018 1.270 5.081 69.545 44.463 5.081 LGA C 22 C 22 1.245 0 0.226 0.993 3.766 61.818 53.939 3.766 LGA D 23 D 23 1.273 0 0.389 1.115 4.291 50.000 39.545 3.056 LGA E 24 E 24 1.285 0 0.025 0.662 5.118 65.909 41.212 5.118 LGA S 25 S 25 1.800 0 0.026 0.101 2.301 54.545 49.091 2.301 LGA N 26 N 26 1.208 0 0.119 1.186 5.522 73.636 45.909 5.522 LGA H 27 H 27 0.367 0 0.091 0.348 1.364 86.818 78.909 1.364 LGA C 28 C 28 0.567 0 0.064 0.787 3.106 95.455 80.303 3.106 LGA V 29 V 29 0.851 0 0.056 0.105 1.286 77.727 74.805 1.119 LGA E 30 E 30 0.601 0 0.070 0.649 2.352 77.727 77.172 2.352 LGA V 31 V 31 0.829 0 0.064 0.107 0.982 81.818 81.818 0.948 LGA R 32 R 32 0.710 0 0.186 0.908 4.324 86.364 53.554 4.324 LGA C 33 C 33 1.109 0 0.500 1.131 3.314 53.636 55.152 1.400 LGA S 34 S 34 2.479 0 0.329 0.604 4.256 41.364 33.030 4.256 LGA D 35 D 35 1.450 0 0.298 0.600 3.112 55.000 54.545 3.112 LGA T 36 T 36 1.132 0 0.127 1.003 3.231 65.455 56.623 1.870 LGA K 37 K 37 0.742 0 0.109 1.242 3.204 70.000 55.152 3.204 LGA Y 38 Y 38 0.974 0 0.050 1.323 4.695 81.818 49.091 4.695 LGA T 39 T 39 1.353 0 0.162 0.150 2.738 55.909 46.753 2.491 LGA L 40 L 40 1.356 0 0.599 0.920 3.253 54.091 42.500 2.692 LGA C 41 C 41 1.883 0 0.031 0.111 6.232 30.455 19.221 6.232 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.365 1.501 2.340 65.488 52.886 26.164 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.37 86.585 94.031 2.798 LGA_LOCAL RMSD: 1.365 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.365 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.365 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.836610 * X + -0.486997 * Y + 0.250834 * Z + -0.310834 Y_new = 0.012297 * X + -0.474475 * Y + -0.880183 * Z + -1.520916 Z_new = 0.547661 * X + -0.733286 * Y + 0.402939 * Z + 8.393914 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.126895 -0.579566 -1.068339 [DEG: 179.1579 -33.2067 -61.2113 ] ZXZ: 0.277620 1.156070 2.500105 [DEG: 15.9065 66.2380 143.2455 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS377_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.37 94.031 1.37 REMARK ---------------------------------------------------------- MOLECULE T0955TS377_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 -3.938 -13.726 1.113 1.00 0.50 N ATOM 2 CA SER 1 -2.526 -13.635 0.756 1.00 0.50 C ATOM 3 C SER 1 -1.683 -12.907 1.779 1.00 0.50 C ATOM 4 O SER 1 -1.599 -11.671 1.772 1.00 0.50 O ATOM 5 CB SER 1 -2.355 -12.917 -0.562 1.00 0.50 C ATOM 6 OG SER 1 -0.974 -12.779 -0.895 1.00 0.50 O ATOM 14 N GLN 2 -0.965 -13.670 2.600 1.00 0.57 N ATOM 15 CA GLN 2 -0.120 -13.052 3.611 1.00 0.57 C ATOM 16 C GLN 2 0.970 -12.214 2.968 1.00 0.57 C ATOM 17 O GLN 2 1.297 -11.139 3.462 1.00 0.57 O ATOM 18 CB GLN 2 0.527 -14.109 4.507 1.00 0.57 C ATOM 19 CG GLN 2 -0.434 -14.835 5.432 1.00 0.57 C ATOM 20 CD GLN 2 0.262 -15.906 6.261 1.00 0.57 C ATOM 21 OE1 GLN 2 1.323 -16.414 5.881 1.00 0.57 O ATOM 22 NE2 GLN 2 -0.333 -16.257 7.397 1.00 0.57 N ATOM 31 N GLU 3 1.506 -12.682 1.840 1.00 0.83 N ATOM 32 CA GLU 3 2.583 -11.949 1.195 1.00 0.83 C ATOM 33 C GLU 3 2.083 -10.608 0.661 1.00 0.83 C ATOM 34 O GLU 3 2.789 -9.597 0.750 1.00 0.83 O ATOM 35 CB GLU 3 3.199 -12.780 0.069 1.00 0.83 C ATOM 36 CG GLU 3 3.933 -14.050 0.551 1.00 0.83 C ATOM 37 CD GLU 3 5.095 -13.789 1.501 1.00 0.83 C ATOM 38 OE1 GLU 3 5.947 -13.000 1.186 1.00 0.83 O ATOM 39 OE2 GLU 3 5.113 -14.398 2.560 1.00 0.83 O ATOM 46 N THR 4 0.843 -10.554 0.151 1.00 0.48 N ATOM 47 CA THR 4 0.358 -9.271 -0.325 1.00 0.48 C ATOM 48 C THR 4 0.255 -8.341 0.877 1.00 0.48 C ATOM 49 O THR 4 0.685 -7.194 0.812 1.00 0.48 O ATOM 50 CB THR 4 -0.990 -9.392 -1.063 1.00 0.48 C ATOM 51 OG1 THR 4 -0.816 -10.280 -2.193 1.00 0.48 O ATOM 52 CG2 THR 4 -1.441 -8.001 -1.556 1.00 0.48 C ATOM 60 N ARG 5 -0.285 -8.842 1.994 1.00 0.08 N ATOM 61 CA ARG 5 -0.423 -8.012 3.188 1.00 0.08 C ATOM 62 C ARG 5 0.929 -7.544 3.744 1.00 0.08 C ATOM 63 O ARG 5 1.058 -6.410 4.229 1.00 0.08 O ATOM 64 CB ARG 5 -1.208 -8.754 4.255 1.00 0.08 C ATOM 65 CG ARG 5 -2.679 -8.950 3.915 1.00 0.08 C ATOM 66 CD ARG 5 -3.409 -7.654 4.003 1.00 0.08 C ATOM 67 NE ARG 5 -4.820 -7.789 3.718 1.00 0.08 N ATOM 68 CZ ARG 5 -5.700 -6.781 3.649 1.00 0.08 C ATOM 69 NH1 ARG 5 -5.329 -5.539 3.868 1.00 0.08 N ATOM 70 NH2 ARG 5 -6.947 -7.071 3.354 1.00 0.08 N ATOM 84 N LYS 6 1.967 -8.384 3.650 1.00 0.62 N ATOM 85 CA LYS 6 3.283 -7.960 4.124 1.00 0.62 C ATOM 86 C LYS 6 3.776 -6.794 3.276 1.00 0.62 C ATOM 87 O LYS 6 4.294 -5.800 3.801 1.00 0.62 O ATOM 88 CB LYS 6 4.294 -9.102 4.029 1.00 0.62 C ATOM 89 CG LYS 6 4.108 -10.245 5.019 1.00 0.62 C ATOM 90 CD LYS 6 5.120 -11.343 4.735 1.00 0.62 C ATOM 91 CE LYS 6 4.917 -12.560 5.613 1.00 0.62 C ATOM 92 NZ LYS 6 5.856 -13.660 5.235 1.00 0.62 N ATOM 106 N LYS 7 3.562 -6.888 1.961 1.00 0.28 N ATOM 107 CA LYS 7 3.981 -5.827 1.061 1.00 0.28 C ATOM 108 C LYS 7 3.156 -4.580 1.303 1.00 0.28 C ATOM 109 O LYS 7 3.701 -3.484 1.403 1.00 0.28 O ATOM 110 CB LYS 7 3.850 -6.275 -0.390 1.00 0.28 C ATOM 111 CG LYS 7 4.861 -7.333 -0.806 1.00 0.28 C ATOM 112 CD LYS 7 4.656 -7.758 -2.245 1.00 0.28 C ATOM 113 CE LYS 7 5.636 -8.843 -2.645 1.00 0.28 C ATOM 114 NZ LYS 7 5.417 -9.295 -4.046 1.00 0.28 N ATOM 128 N CYS 8 1.853 -4.748 1.517 1.00 0.37 N ATOM 129 CA CYS 8 0.978 -3.610 1.748 1.00 0.37 C ATOM 130 C CYS 8 1.408 -2.843 2.983 1.00 0.37 C ATOM 131 O CYS 8 1.414 -1.610 2.991 1.00 0.37 O ATOM 132 CB CYS 8 -0.461 -4.069 1.957 1.00 0.37 C ATOM 133 SG CYS 8 -1.264 -4.734 0.494 1.00 0.37 S ATOM 138 N THR 9 1.789 -3.586 4.019 1.00 0.41 N ATOM 139 CA THR 9 2.204 -2.997 5.271 1.00 0.41 C ATOM 140 C THR 9 3.473 -2.177 5.108 1.00 0.41 C ATOM 141 O THR 9 3.524 -1.022 5.543 1.00 0.41 O ATOM 142 CB THR 9 2.451 -4.097 6.313 1.00 0.41 C ATOM 143 OG1 THR 9 1.232 -4.824 6.540 1.00 0.41 O ATOM 144 CG2 THR 9 2.941 -3.478 7.603 1.00 0.41 C ATOM 152 N GLU 10 4.488 -2.744 4.453 1.00 0.74 N ATOM 153 CA GLU 10 5.734 -2.002 4.312 1.00 0.74 C ATOM 154 C GLU 10 5.540 -0.793 3.395 1.00 0.74 C ATOM 155 O GLU 10 6.113 0.276 3.625 1.00 0.74 O ATOM 156 CB GLU 10 6.845 -2.920 3.814 1.00 0.74 C ATOM 157 CG GLU 10 7.265 -4.004 4.846 1.00 0.74 C ATOM 158 CD GLU 10 7.796 -3.436 6.165 1.00 0.74 C ATOM 159 OE1 GLU 10 8.669 -2.606 6.127 1.00 0.74 O ATOM 160 OE2 GLU 10 7.320 -3.852 7.214 1.00 0.74 O ATOM 167 N MET 11 4.711 -0.948 2.367 1.00 0.20 N ATOM 168 CA MET 11 4.424 0.150 1.464 1.00 0.20 C ATOM 169 C MET 11 3.754 1.284 2.220 1.00 0.20 C ATOM 170 O MET 11 4.136 2.442 2.058 1.00 0.20 O ATOM 171 CB MET 11 3.582 -0.383 0.319 1.00 0.20 C ATOM 172 CG MET 11 4.395 -1.287 -0.595 1.00 0.20 C ATOM 173 SD MET 11 3.449 -2.141 -1.830 1.00 0.20 S ATOM 174 CE MET 11 4.803 -3.013 -2.571 1.00 0.20 C ATOM 184 N LYS 12 2.795 0.957 3.087 1.00 0.64 N ATOM 185 CA LYS 12 2.123 1.973 3.881 1.00 0.64 C ATOM 186 C LYS 12 3.109 2.692 4.803 1.00 0.64 C ATOM 187 O LYS 12 3.038 3.908 4.974 1.00 0.64 O ATOM 188 CB LYS 12 0.967 1.362 4.669 1.00 0.64 C ATOM 189 CG LYS 12 0.127 2.368 5.445 1.00 0.64 C ATOM 190 CD LYS 12 -1.088 1.702 6.066 1.00 0.64 C ATOM 191 CE LYS 12 -1.933 2.702 6.836 1.00 0.64 C ATOM 192 NZ LYS 12 -3.141 2.066 7.426 1.00 0.64 N ATOM 206 N LYS 13 4.049 1.946 5.395 1.00 0.08 N ATOM 207 CA LYS 13 5.045 2.566 6.267 1.00 0.08 C ATOM 208 C LYS 13 5.913 3.563 5.496 1.00 0.08 C ATOM 209 O LYS 13 6.245 4.633 6.012 1.00 0.08 O ATOM 210 CB LYS 13 5.968 1.516 6.887 1.00 0.08 C ATOM 211 CG LYS 13 5.365 0.611 7.951 1.00 0.08 C ATOM 212 CD LYS 13 6.418 -0.407 8.385 1.00 0.08 C ATOM 213 CE LYS 13 5.923 -1.378 9.431 1.00 0.08 C ATOM 214 NZ LYS 13 6.949 -2.431 9.709 1.00 0.08 N ATOM 228 N LYS 14 6.273 3.219 4.252 1.00 0.22 N ATOM 229 CA LYS 14 7.083 4.118 3.434 1.00 0.22 C ATOM 230 C LYS 14 6.266 5.339 3.028 1.00 0.22 C ATOM 231 O LYS 14 6.711 6.486 3.140 1.00 0.22 O ATOM 232 CB LYS 14 7.585 3.387 2.188 1.00 0.22 C ATOM 233 CG LYS 14 8.634 2.317 2.469 1.00 0.22 C ATOM 234 CD LYS 14 9.046 1.598 1.195 1.00 0.22 C ATOM 235 CE LYS 14 10.071 0.509 1.483 1.00 0.22 C ATOM 236 NZ LYS 14 10.460 -0.228 0.247 1.00 0.22 N ATOM 250 N PHE 15 5.021 5.107 2.639 1.00 0.46 N ATOM 251 CA PHE 15 4.127 6.175 2.228 1.00 0.46 C ATOM 252 C PHE 15 3.364 6.748 3.416 1.00 0.46 C ATOM 253 O PHE 15 2.131 6.678 3.525 1.00 0.46 O ATOM 254 CB PHE 15 3.242 5.676 1.095 1.00 0.46 C ATOM 255 CG PHE 15 4.021 5.535 -0.191 1.00 0.46 C ATOM 256 CD1 PHE 15 4.569 4.340 -0.606 1.00 0.46 C ATOM 257 CD2 PHE 15 4.192 6.651 -1.005 1.00 0.46 C ATOM 258 CE1 PHE 15 5.275 4.267 -1.787 1.00 0.46 C ATOM 259 CE2 PHE 15 4.881 6.571 -2.183 1.00 0.46 C ATOM 260 CZ PHE 15 5.426 5.381 -2.579 1.00 0.46 C ATOM 270 N LYS 16 4.151 7.350 4.296 1.00 0.46 N ATOM 271 CA LYS 16 3.674 7.908 5.542 1.00 0.46 C ATOM 272 C LYS 16 2.613 8.965 5.302 1.00 0.46 C ATOM 273 O LYS 16 2.792 9.866 4.484 1.00 0.46 O ATOM 274 CB LYS 16 4.850 8.482 6.334 1.00 0.46 C ATOM 275 CG LYS 16 4.493 9.024 7.711 1.00 0.46 C ATOM 276 CD LYS 16 5.738 9.490 8.459 1.00 0.46 C ATOM 277 CE LYS 16 5.390 10.031 9.839 1.00 0.46 C ATOM 278 NZ LYS 16 6.607 10.479 10.581 1.00 0.46 N ATOM 292 N ASN 17 1.496 8.818 6.008 1.00 0.22 N ATOM 293 CA ASN 17 0.335 9.711 5.949 1.00 0.22 C ATOM 294 C ASN 17 -0.293 9.813 4.557 1.00 0.22 C ATOM 295 O ASN 17 -0.985 10.787 4.256 1.00 0.22 O ATOM 296 CB ASN 17 0.687 11.100 6.457 1.00 0.22 C ATOM 297 CG ASN 17 1.099 11.115 7.907 1.00 0.22 C ATOM 298 OD1 ASN 17 0.603 10.328 8.722 1.00 0.22 O ATOM 299 ND2 ASN 17 1.995 12.008 8.245 1.00 0.22 N ATOM 306 N CYS 18 -0.112 8.783 3.739 1.00 0.13 N ATOM 307 CA CYS 18 -0.702 8.748 2.413 1.00 0.13 C ATOM 308 C CYS 18 -1.947 7.882 2.431 1.00 0.13 C ATOM 309 O CYS 18 -2.131 7.066 3.337 1.00 0.13 O ATOM 310 CB CYS 18 0.285 8.185 1.415 1.00 0.13 C ATOM 311 SG CYS 18 1.840 9.132 1.311 1.00 0.13 S ATOM 317 N GLU 19 -2.818 8.047 1.448 1.00 0.53 N ATOM 318 CA GLU 19 -3.969 7.168 1.358 1.00 0.53 C ATOM 319 C GLU 19 -3.467 5.883 0.735 1.00 0.53 C ATOM 320 O GLU 19 -2.898 5.924 -0.354 1.00 0.53 O ATOM 321 CB GLU 19 -5.053 7.793 0.481 1.00 0.53 C ATOM 322 CG GLU 19 -5.657 9.079 1.032 1.00 0.53 C ATOM 323 CD GLU 19 -6.681 9.685 0.101 1.00 0.53 C ATOM 324 OE1 GLU 19 -6.894 9.128 -0.956 1.00 0.53 O ATOM 325 OE2 GLU 19 -7.254 10.694 0.444 1.00 0.53 O ATOM 332 N VAL 20 -3.633 4.752 1.418 1.00 0.51 N ATOM 333 CA VAL 20 -3.105 3.500 0.879 1.00 0.51 C ATOM 334 C VAL 20 -4.178 2.414 0.797 1.00 0.51 C ATOM 335 O VAL 20 -4.808 2.079 1.803 1.00 0.51 O ATOM 336 CB VAL 20 -1.936 2.998 1.761 1.00 0.51 C ATOM 337 CG1 VAL 20 -1.376 1.682 1.184 1.00 0.51 C ATOM 338 CG2 VAL 20 -0.855 4.102 1.876 1.00 0.51 C ATOM 348 N ARG 21 -4.365 1.857 -0.400 1.00 0.63 N ATOM 349 CA ARG 21 -5.324 0.782 -0.623 1.00 0.63 C ATOM 350 C ARG 21 -4.582 -0.536 -0.802 1.00 0.63 C ATOM 351 O ARG 21 -3.686 -0.640 -1.645 1.00 0.63 O ATOM 352 CB ARG 21 -6.171 1.043 -1.869 1.00 0.63 C ATOM 353 CG ARG 21 -7.259 -0.022 -2.174 1.00 0.63 C ATOM 354 CD ARG 21 -8.186 0.388 -3.323 1.00 0.63 C ATOM 355 NE ARG 21 -7.529 0.359 -4.645 1.00 0.63 N ATOM 356 CZ ARG 21 -7.525 -0.704 -5.484 1.00 0.63 C ATOM 357 NH1 ARG 21 -8.153 -1.823 -5.165 1.00 0.63 N ATOM 358 NH2 ARG 21 -6.883 -0.589 -6.621 1.00 0.63 N ATOM 372 N CYS 22 -4.963 -1.549 -0.025 1.00 0.65 N ATOM 373 CA CYS 22 -4.352 -2.873 -0.156 1.00 0.65 C ATOM 374 C CYS 22 -5.307 -3.883 -0.753 1.00 0.65 C ATOM 375 O CYS 22 -6.172 -4.438 -0.065 1.00 0.65 O ATOM 376 CB CYS 22 -3.919 -3.417 1.193 1.00 0.65 C ATOM 377 SG CYS 22 -3.166 -5.082 1.102 1.00 0.65 S ATOM 382 N ASP 23 -5.161 -4.151 -2.035 1.00 0.97 N ATOM 383 CA ASP 23 -6.096 -5.035 -2.673 1.00 0.97 C ATOM 384 C ASP 23 -5.609 -6.458 -2.587 1.00 0.97 C ATOM 385 O ASP 23 -4.994 -6.981 -3.526 1.00 0.97 O ATOM 386 CB ASP 23 -6.325 -4.599 -4.111 1.00 0.97 C ATOM 387 CG ASP 23 -7.439 -5.343 -4.819 1.00 0.97 C ATOM 388 OD1 ASP 23 -7.815 -6.407 -4.357 1.00 0.97 O ATOM 389 OD2 ASP 23 -7.955 -4.826 -5.807 1.00 0.97 O ATOM 394 N GLU 24 -5.903 -7.079 -1.452 1.00 0.55 N ATOM 395 CA GLU 24 -5.479 -8.444 -1.179 1.00 0.55 C ATOM 396 C GLU 24 -6.008 -9.421 -2.232 1.00 0.55 C ATOM 397 O GLU 24 -5.350 -10.408 -2.563 1.00 0.55 O ATOM 398 CB GLU 24 -5.915 -8.882 0.217 1.00 0.55 C ATOM 399 CG GLU 24 -5.399 -10.260 0.614 1.00 0.55 C ATOM 400 CD GLU 24 -5.750 -10.702 2.032 1.00 0.55 C ATOM 401 OE1 GLU 24 -6.413 -9.982 2.759 1.00 0.55 O ATOM 402 OE2 GLU 24 -5.319 -11.779 2.395 1.00 0.55 O ATOM 409 N SER 25 -7.227 -9.163 -2.721 1.00 0.90 N ATOM 410 CA SER 25 -7.875 -10.032 -3.702 1.00 0.90 C ATOM 411 C SER 25 -7.221 -9.982 -5.082 1.00 0.90 C ATOM 412 O SER 25 -7.048 -11.023 -5.721 1.00 0.90 O ATOM 413 CB SER 25 -9.339 -9.655 -3.843 1.00 0.90 C ATOM 414 OG SER 25 -10.057 -9.918 -2.663 1.00 0.90 O ATOM 420 N ASN 26 -6.853 -8.780 -5.545 1.00 0.31 N ATOM 421 CA ASN 26 -6.242 -8.658 -6.868 1.00 0.31 C ATOM 422 C ASN 26 -4.731 -8.438 -6.816 1.00 0.31 C ATOM 423 O ASN 26 -4.101 -8.255 -7.859 1.00 0.31 O ATOM 424 CB ASN 26 -6.880 -7.536 -7.667 1.00 0.31 C ATOM 425 CG ASN 26 -8.333 -7.785 -8.021 1.00 0.31 C ATOM 426 OD1 ASN 26 -8.679 -8.798 -8.648 1.00 0.31 O ATOM 427 ND2 ASN 26 -9.191 -6.869 -7.624 1.00 0.31 N ATOM 434 N HIS 27 -4.142 -8.506 -5.620 1.00 0.45 N ATOM 435 CA HIS 27 -2.697 -8.372 -5.427 1.00 0.45 C ATOM 436 C HIS 27 -2.151 -7.037 -5.921 1.00 0.45 C ATOM 437 O HIS 27 -1.159 -6.999 -6.650 1.00 0.45 O ATOM 438 CB HIS 27 -1.952 -9.505 -6.129 1.00 0.45 C ATOM 439 CG HIS 27 -2.445 -10.850 -5.748 1.00 0.45 C ATOM 440 ND1 HIS 27 -2.260 -11.391 -4.494 1.00 0.45 N ATOM 441 CD2 HIS 27 -3.128 -11.775 -6.464 1.00 0.45 C ATOM 442 CE1 HIS 27 -2.808 -12.596 -4.461 1.00 0.45 C ATOM 443 NE2 HIS 27 -3.336 -12.851 -5.645 1.00 0.45 N ATOM 451 N CYS 28 -2.793 -5.947 -5.512 1.00 0.61 N ATOM 452 CA CYS 28 -2.390 -4.607 -5.955 1.00 0.61 C ATOM 453 C CYS 28 -2.420 -3.538 -4.866 1.00 0.61 C ATOM 454 O CYS 28 -3.321 -3.504 -4.028 1.00 0.61 O ATOM 455 CB CYS 28 -3.265 -4.125 -7.109 1.00 0.61 C ATOM 456 SG CYS 28 -2.799 -2.464 -7.717 1.00 0.61 S ATOM 462 N VAL 29 -1.405 -2.683 -4.863 1.00 0.37 N ATOM 463 CA VAL 29 -1.341 -1.595 -3.899 1.00 0.37 C ATOM 464 C VAL 29 -1.364 -0.248 -4.593 1.00 0.37 C ATOM 465 O VAL 29 -0.579 0.023 -5.512 1.00 0.37 O ATOM 466 CB VAL 29 -0.114 -1.718 -2.985 1.00 0.37 C ATOM 467 CG1 VAL 29 -0.037 -0.528 -2.036 1.00 0.37 C ATOM 468 CG2 VAL 29 -0.233 -2.964 -2.185 1.00 0.37 C ATOM 478 N GLU 30 -2.293 0.591 -4.143 1.00 0.41 N ATOM 479 CA GLU 30 -2.489 1.916 -4.724 1.00 0.41 C ATOM 480 C GLU 30 -2.314 2.999 -3.670 1.00 0.41 C ATOM 481 O GLU 30 -2.916 2.942 -2.594 1.00 0.41 O ATOM 482 CB GLU 30 -3.886 2.000 -5.363 1.00 0.41 C ATOM 483 CG GLU 30 -4.226 3.314 -6.069 1.00 0.41 C ATOM 484 CD GLU 30 -5.624 3.289 -6.698 1.00 0.41 C ATOM 485 OE1 GLU 30 -6.307 2.294 -6.561 1.00 0.41 O ATOM 486 OE2 GLU 30 -6.008 4.259 -7.328 1.00 0.41 O ATOM 493 N VAL 31 -1.470 3.985 -3.970 1.00 0.90 N ATOM 494 CA VAL 31 -1.204 5.061 -3.017 1.00 0.90 C ATOM 495 C VAL 31 -1.474 6.454 -3.579 1.00 0.90 C ATOM 496 O VAL 31 -1.084 6.759 -4.707 1.00 0.90 O ATOM 497 CB VAL 31 0.247 5.002 -2.512 1.00 0.90 C ATOM 498 CG1 VAL 31 0.500 6.137 -1.550 1.00 0.90 C ATOM 499 CG2 VAL 31 0.493 3.682 -1.869 1.00 0.90 C ATOM 509 N ARG 32 -2.141 7.302 -2.783 1.00 0.07 N ATOM 510 CA ARG 32 -2.402 8.683 -3.198 1.00 0.07 C ATOM 511 C ARG 32 -2.060 9.729 -2.130 1.00 0.07 C ATOM 512 O ARG 32 -2.370 9.590 -0.941 1.00 0.07 O ATOM 513 CB ARG 32 -3.854 8.860 -3.631 1.00 0.07 C ATOM 514 CG ARG 32 -4.206 10.274 -4.120 1.00 0.07 C ATOM 515 CD ARG 32 -5.573 10.358 -4.731 1.00 0.07 C ATOM 516 NE ARG 32 -6.651 10.103 -3.778 1.00 0.07 N ATOM 517 CZ ARG 32 -7.962 10.119 -4.072 1.00 0.07 C ATOM 518 NH1 ARG 32 -8.388 10.396 -5.290 1.00 0.07 N ATOM 519 NH2 ARG 32 -8.805 9.848 -3.106 1.00 0.07 N ATOM 533 N CYS 33 -1.376 10.781 -2.566 1.00 0.81 N ATOM 534 CA CYS 33 -1.023 11.891 -1.681 1.00 0.81 C ATOM 535 C CYS 33 -0.612 13.093 -2.500 1.00 0.81 C ATOM 536 O CYS 33 -0.220 12.919 -3.654 1.00 0.81 O ATOM 537 CB CYS 33 0.127 11.491 -0.780 1.00 0.81 C ATOM 538 SG CYS 33 1.629 11.084 -1.691 1.00 0.81 S ATOM 544 N SER 34 -0.588 14.282 -1.893 1.00 0.75 N ATOM 545 CA SER 34 -0.143 15.463 -2.629 1.00 0.75 C ATOM 546 C SER 34 -0.864 15.504 -3.962 1.00 0.75 C ATOM 547 O SER 34 -2.074 15.289 -4.039 1.00 0.75 O ATOM 548 CB SER 34 1.370 15.429 -2.850 1.00 0.75 C ATOM 549 OG SER 34 1.847 16.646 -3.406 1.00 0.75 O ATOM 555 N ASP 35 -0.100 15.768 -5.001 1.00 0.31 N ATOM 556 CA ASP 35 -0.563 15.752 -6.375 1.00 0.31 C ATOM 557 C ASP 35 -0.044 14.525 -7.142 1.00 0.31 C ATOM 558 O ASP 35 0.135 14.586 -8.360 1.00 0.31 O ATOM 559 CB ASP 35 -0.173 17.062 -7.074 1.00 0.31 C ATOM 560 CG ASP 35 1.340 17.353 -7.048 1.00 0.31 C ATOM 561 OD1 ASP 35 2.036 16.786 -6.216 1.00 0.31 O ATOM 562 OD2 ASP 35 1.783 18.150 -7.848 1.00 0.31 O ATOM 567 N THR 36 0.220 13.422 -6.421 1.00 0.35 N ATOM 568 CA THR 36 0.766 12.214 -7.035 1.00 0.35 C ATOM 569 C THR 36 0.029 10.904 -6.702 1.00 0.35 C ATOM 570 O THR 36 -0.649 10.762 -5.676 1.00 0.35 O ATOM 571 CB THR 36 2.240 12.041 -6.608 1.00 0.35 C ATOM 572 OG1 THR 36 2.307 11.835 -5.184 1.00 0.35 O ATOM 573 CG2 THR 36 3.051 13.274 -6.959 1.00 0.35 C ATOM 581 N LYS 37 0.227 9.909 -7.568 1.00 0.97 N ATOM 582 CA LYS 37 -0.298 8.568 -7.326 1.00 0.97 C ATOM 583 C LYS 37 0.742 7.508 -7.644 1.00 0.97 C ATOM 584 O LYS 37 1.558 7.688 -8.552 1.00 0.97 O ATOM 585 CB LYS 37 -1.561 8.293 -8.134 1.00 0.97 C ATOM 586 CG LYS 37 -2.769 9.114 -7.736 1.00 0.97 C ATOM 587 CD LYS 37 -3.993 8.625 -8.462 1.00 0.97 C ATOM 588 CE LYS 37 -4.369 7.247 -7.945 1.00 0.97 C ATOM 589 NZ LYS 37 -5.616 6.741 -8.532 1.00 0.97 N ATOM 603 N TYR 38 0.691 6.393 -6.911 1.00 0.48 N ATOM 604 CA TYR 38 1.643 5.310 -7.129 1.00 0.48 C ATOM 605 C TYR 38 0.963 3.947 -7.231 1.00 0.48 C ATOM 606 O TYR 38 -0.007 3.662 -6.524 1.00 0.48 O ATOM 607 CB TYR 38 2.594 5.256 -5.931 1.00 0.48 C ATOM 608 CG TYR 38 3.186 6.589 -5.623 1.00 0.48 C ATOM 609 CD1 TYR 38 2.448 7.456 -4.822 1.00 0.48 C ATOM 610 CD2 TYR 38 4.410 6.975 -6.120 1.00 0.48 C ATOM 611 CE1 TYR 38 2.913 8.698 -4.544 1.00 0.48 C ATOM 612 CE2 TYR 38 4.890 8.240 -5.826 1.00 0.48 C ATOM 613 CZ TYR 38 4.136 9.101 -5.046 1.00 0.48 C ATOM 614 OH TYR 38 4.588 10.365 -4.767 1.00 0.48 O ATOM 624 N THR 39 1.536 3.076 -8.052 1.00 0.87 N ATOM 625 CA THR 39 1.137 1.670 -8.087 1.00 0.87 C ATOM 626 C THR 39 2.362 0.945 -7.585 1.00 0.87 C ATOM 627 O THR 39 3.468 1.231 -8.054 1.00 0.87 O ATOM 628 CB THR 39 0.735 1.177 -9.482 1.00 0.87 C ATOM 629 OG1 THR 39 -0.380 1.944 -9.962 1.00 0.87 O ATOM 630 CG2 THR 39 0.327 -0.288 -9.389 1.00 0.87 C ATOM 638 N LEU 40 2.196 0.069 -6.603 1.00 0.05 N ATOM 639 CA LEU 40 3.368 -0.504 -5.970 1.00 0.05 C ATOM 640 C LEU 40 3.474 -2.034 -6.000 1.00 0.05 C ATOM 641 O LEU 40 4.569 -2.459 -5.629 1.00 0.05 O ATOM 642 CB LEU 40 3.345 -0.025 -4.528 1.00 0.05 C ATOM 643 CG LEU 40 3.361 1.481 -4.308 1.00 0.05 C ATOM 644 CD1 LEU 40 3.231 1.734 -2.868 1.00 0.05 C ATOM 645 CD2 LEU 40 4.630 2.089 -4.831 1.00 0.05 C ATOM 657 N CYS 41 2.383 -2.648 -5.556 1.00 0.73 N ATOM 658 CA CYS 41 2.104 -3.932 -6.174 1.00 0.73 C ATOM 659 C CYS 41 1.275 -3.706 -7.426 1.00 0.73 C ATOM 660 O CYS 41 1.835 -3.697 -8.522 1.00 0.73 O ATOM 661 OXT CYS 41 0.234 -3.066 -7.285 1.00 0.73 O ATOM 662 CB CYS 41 1.351 -4.872 -5.218 1.00 0.73 C ATOM 663 SG CYS 41 2.218 -5.345 -3.709 1.00 0.73 S TER END