####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS377_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.41 1.41 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.41 1.41 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 5 - 39 0.99 1.50 LCS_AVERAGE: 80.67 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 7 41 41 3 3 5 21 37 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 9 16 21 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 41 41 9 16 29 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 25 41 41 9 16 32 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 35 41 41 9 16 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 35 41 41 9 19 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 35 41 41 9 16 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 35 41 41 9 16 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 35 41 41 8 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 35 41 41 9 16 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 35 41 41 8 16 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 35 41 41 8 21 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 35 41 41 8 21 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 35 41 41 6 21 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 35 41 41 6 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 35 41 41 5 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 35 41 41 8 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 35 41 41 6 21 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 35 41 41 8 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 35 41 41 4 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 35 41 41 8 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 35 41 41 8 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 35 41 41 6 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 35 41 41 4 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 35 41 41 8 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 35 41 41 4 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 35 41 41 4 21 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 35 41 41 8 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 35 41 41 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 34 41 41 3 21 32 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 25 41 41 0 4 6 20 26 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 93.56 ( 80.67 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 24 34 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 21.95 58.54 82.93 92.68 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.76 0.97 1.13 1.19 1.28 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 GDT RMS_ALL_AT 3.14 1.51 1.51 1.45 1.43 1.42 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 1.41 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.139 0 0.037 0.750 5.699 14.091 20.303 2.998 LGA Q 2 Q 2 2.213 0 0.162 1.179 4.328 48.182 33.333 4.328 LGA E 3 E 3 2.105 0 0.015 1.488 7.495 44.545 23.030 6.153 LGA T 4 T 4 1.864 0 0.046 1.099 3.890 50.909 47.273 3.890 LGA R 5 R 5 1.256 0 0.012 0.309 3.053 65.455 49.587 3.053 LGA K 6 K 6 1.097 0 0.010 1.277 7.099 65.455 39.596 7.026 LGA K 7 K 7 1.485 0 0.054 0.666 3.851 65.455 39.596 3.618 LGA C 8 C 8 1.521 0 0.037 0.744 4.139 61.818 53.030 4.139 LGA T 9 T 9 1.038 0 0.036 0.095 1.213 69.545 74.805 0.782 LGA E 10 E 10 0.697 0 0.037 0.984 4.735 77.727 49.495 4.735 LGA M 11 M 11 1.518 0 0.055 0.155 1.894 54.545 52.727 1.858 LGA K 12 K 12 1.838 0 0.056 0.638 2.166 47.727 59.596 1.452 LGA K 13 K 13 1.443 0 0.016 0.634 1.903 58.182 64.242 1.698 LGA K 14 K 14 1.519 0 0.017 0.646 3.833 54.545 48.081 3.833 LGA F 15 F 15 1.242 0 0.118 0.479 2.934 73.636 57.355 2.462 LGA K 16 K 16 0.978 0 0.020 0.930 4.525 77.727 52.929 4.525 LGA N 17 N 17 0.733 0 0.194 0.473 2.349 82.273 72.500 2.349 LGA C 18 C 18 0.591 0 0.059 0.070 0.768 86.364 84.848 0.542 LGA E 19 E 19 0.703 0 0.214 0.448 1.988 81.818 76.566 0.707 LGA V 20 V 20 1.168 0 0.051 0.062 1.304 65.455 65.455 1.157 LGA R 21 R 21 0.796 0 0.041 1.289 3.782 81.818 60.661 3.782 LGA C 22 C 22 0.917 0 0.115 0.917 3.865 77.727 64.545 3.865 LGA D 23 D 23 1.096 0 0.325 1.103 3.691 53.636 44.545 2.837 LGA E 24 E 24 0.626 0 0.084 0.546 3.001 86.364 58.586 3.001 LGA S 25 S 25 0.940 0 0.074 0.659 1.929 81.818 73.939 1.929 LGA N 26 N 26 0.453 0 0.081 1.168 4.525 86.364 65.455 4.525 LGA H 27 H 27 0.582 0 0.088 0.293 1.352 86.364 80.364 1.341 LGA C 28 C 28 0.724 0 0.161 0.767 2.909 77.727 70.000 2.909 LGA V 29 V 29 0.803 0 0.056 0.086 1.351 77.727 72.468 1.271 LGA E 30 E 30 0.944 0 0.081 0.698 2.130 73.636 66.263 1.925 LGA V 31 V 31 1.128 0 0.065 0.113 1.383 65.455 65.455 1.383 LGA R 32 R 32 1.034 0 0.187 0.776 1.465 78.182 70.083 1.465 LGA C 33 C 33 0.857 0 0.545 0.944 3.365 57.727 58.485 2.198 LGA S 34 S 34 1.176 0 0.191 0.569 2.331 65.455 60.909 2.331 LGA D 35 D 35 1.527 0 0.155 0.934 4.614 58.182 39.318 4.614 LGA T 36 T 36 1.107 0 0.175 1.004 3.095 61.818 55.065 2.046 LGA K 37 K 37 0.726 0 0.088 1.244 2.903 74.091 63.636 2.903 LGA Y 38 Y 38 0.978 0 0.036 1.322 4.639 81.818 49.848 4.639 LGA T 39 T 39 1.029 0 0.076 0.080 2.217 62.727 54.026 2.092 LGA L 40 L 40 1.635 0 0.213 0.973 3.385 58.182 41.818 2.902 LGA C 41 C 41 3.857 0 0.504 1.347 6.324 20.909 13.766 6.324 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.410 1.465 2.142 66.175 55.941 32.151 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.41 87.805 94.469 2.716 LGA_LOCAL RMSD: 1.410 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.410 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.410 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.830316 * X + -0.455605 * Y + 0.320935 * Z + -2.630546 Y_new = -0.096670 * X + -0.449402 * Y + -0.888084 * Z + -1.298766 Z_new = 0.548844 * X + -0.768415 * Y + 0.329103 * Z + 7.299554 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.025689 -0.580981 -1.166144 [DEG: -173.3592 -33.2877 -66.8151 ] ZXZ: 0.346776 1.235443 2.521364 [DEG: 19.8688 70.7857 144.4635 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS377_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.41 94.469 1.41 REMARK ---------------------------------------------------------- MOLECULE T0955TS377_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 -4.084 -13.563 0.389 1.00 0.50 N ATOM 2 CA SER 1 -2.800 -14.085 0.850 1.00 0.50 C ATOM 3 C SER 1 -2.050 -13.128 1.750 1.00 0.50 C ATOM 4 O SER 1 -1.896 -11.933 1.456 1.00 0.50 O ATOM 5 CB SER 1 -1.884 -14.442 -0.301 1.00 0.50 C ATOM 6 OG SER 1 -0.587 -14.803 0.181 1.00 0.50 O ATOM 14 N GLN 2 -1.479 -13.693 2.800 1.00 0.12 N ATOM 15 CA GLN 2 -0.701 -12.930 3.758 1.00 0.12 C ATOM 16 C GLN 2 0.513 -12.284 3.106 1.00 0.12 C ATOM 17 O GLN 2 1.008 -11.274 3.600 1.00 0.12 O ATOM 18 CB GLN 2 -0.241 -13.817 4.914 1.00 0.12 C ATOM 19 CG GLN 2 -1.361 -14.284 5.828 1.00 0.12 C ATOM 20 CD GLN 2 -0.862 -15.177 6.958 1.00 0.12 C ATOM 21 OE1 GLN 2 0.187 -15.821 6.849 1.00 0.12 O ATOM 22 NE2 GLN 2 -1.615 -15.218 8.053 1.00 0.12 N ATOM 31 N GLU 3 1.004 -12.856 1.999 1.00 0.91 N ATOM 32 CA GLU 3 2.189 -12.286 1.373 1.00 0.91 C ATOM 33 C GLU 3 1.861 -10.906 0.803 1.00 0.91 C ATOM 34 O GLU 3 2.713 -10.008 0.784 1.00 0.91 O ATOM 35 CB GLU 3 2.740 -13.222 0.297 1.00 0.91 C ATOM 36 CG GLU 3 3.310 -14.548 0.853 1.00 0.91 C ATOM 37 CD GLU 3 4.466 -14.359 1.833 1.00 0.91 C ATOM 38 OE1 GLU 3 5.408 -13.684 1.505 1.00 0.91 O ATOM 39 OE2 GLU 3 4.385 -14.894 2.926 1.00 0.91 O ATOM 46 N THR 4 0.621 -10.729 0.333 1.00 0.41 N ATOM 47 CA THR 4 0.209 -9.447 -0.199 1.00 0.41 C ATOM 48 C THR 4 0.159 -8.481 0.960 1.00 0.41 C ATOM 49 O THR 4 0.649 -7.364 0.858 1.00 0.41 O ATOM 50 CB THR 4 -1.134 -9.526 -0.950 1.00 0.41 C ATOM 51 OG1 THR 4 -0.977 -10.422 -2.077 1.00 0.41 O ATOM 52 CG2 THR 4 -1.569 -8.137 -1.423 1.00 0.41 C ATOM 60 N ARG 5 -0.396 -8.930 2.090 1.00 0.83 N ATOM 61 CA ARG 5 -0.500 -8.059 3.258 1.00 0.83 C ATOM 62 C ARG 5 0.886 -7.626 3.756 1.00 0.83 C ATOM 63 O ARG 5 1.083 -6.477 4.180 1.00 0.83 O ATOM 64 CB ARG 5 -1.231 -8.753 4.391 1.00 0.83 C ATOM 65 CG ARG 5 -2.708 -8.969 4.163 1.00 0.83 C ATOM 66 CD ARG 5 -3.334 -9.676 5.313 1.00 0.83 C ATOM 67 NE ARG 5 -4.752 -9.874 5.115 1.00 0.83 N ATOM 68 CZ ARG 5 -5.571 -10.549 5.935 1.00 0.83 C ATOM 69 NH1 ARG 5 -5.125 -11.109 7.042 1.00 0.83 N ATOM 70 NH2 ARG 5 -6.837 -10.629 5.601 1.00 0.83 N ATOM 84 N LYS 6 1.872 -8.528 3.685 1.00 0.55 N ATOM 85 CA LYS 6 3.220 -8.164 4.113 1.00 0.55 C ATOM 86 C LYS 6 3.770 -7.062 3.211 1.00 0.55 C ATOM 87 O LYS 6 4.328 -6.068 3.690 1.00 0.55 O ATOM 88 CB LYS 6 4.148 -9.379 4.053 1.00 0.55 C ATOM 89 CG LYS 6 3.894 -10.456 5.101 1.00 0.55 C ATOM 90 CD LYS 6 4.807 -11.655 4.862 1.00 0.55 C ATOM 91 CE LYS 6 4.523 -12.797 5.822 1.00 0.55 C ATOM 92 NZ LYS 6 5.339 -14.007 5.488 1.00 0.55 N ATOM 106 N LYS 7 3.551 -7.200 1.898 1.00 0.82 N ATOM 107 CA LYS 7 4.027 -6.179 0.977 1.00 0.82 C ATOM 108 C LYS 7 3.258 -4.887 1.184 1.00 0.82 C ATOM 109 O LYS 7 3.847 -3.806 1.206 1.00 0.82 O ATOM 110 CB LYS 7 3.906 -6.654 -0.468 1.00 0.82 C ATOM 111 CG LYS 7 4.892 -7.760 -0.835 1.00 0.82 C ATOM 112 CD LYS 7 4.732 -8.198 -2.277 1.00 0.82 C ATOM 113 CE LYS 7 5.710 -9.293 -2.633 1.00 0.82 C ATOM 114 NZ LYS 7 5.550 -9.738 -4.044 1.00 0.82 N ATOM 128 N CYS 8 1.952 -4.994 1.422 1.00 0.22 N ATOM 129 CA CYS 8 1.132 -3.809 1.624 1.00 0.22 C ATOM 130 C CYS 8 1.599 -3.029 2.833 1.00 0.22 C ATOM 131 O CYS 8 1.671 -1.800 2.796 1.00 0.22 O ATOM 132 CB CYS 8 -0.331 -4.179 1.833 1.00 0.22 C ATOM 133 SG CYS 8 -1.199 -4.794 0.367 1.00 0.22 S ATOM 138 N THR 9 1.962 -3.745 3.889 1.00 0.22 N ATOM 139 CA THR 9 2.420 -3.115 5.100 1.00 0.22 C ATOM 140 C THR 9 3.677 -2.304 4.829 1.00 0.22 C ATOM 141 O THR 9 3.764 -1.135 5.223 1.00 0.22 O ATOM 142 CB THR 9 2.709 -4.173 6.175 1.00 0.22 C ATOM 143 OG1 THR 9 1.497 -4.890 6.475 1.00 0.22 O ATOM 144 CG2 THR 9 3.246 -3.508 7.421 1.00 0.22 C ATOM 152 N GLU 10 4.637 -2.894 4.119 1.00 0.59 N ATOM 153 CA GLU 10 5.861 -2.159 3.847 1.00 0.59 C ATOM 154 C GLU 10 5.612 -0.968 2.918 1.00 0.59 C ATOM 155 O GLU 10 6.223 0.097 3.085 1.00 0.59 O ATOM 156 CB GLU 10 6.928 -3.092 3.283 1.00 0.59 C ATOM 157 CG GLU 10 7.441 -4.128 4.309 1.00 0.59 C ATOM 158 CD GLU 10 8.094 -3.498 5.543 1.00 0.59 C ATOM 159 OE1 GLU 10 8.964 -2.680 5.383 1.00 0.59 O ATOM 160 OE2 GLU 10 7.709 -3.844 6.650 1.00 0.59 O ATOM 167 N MET 11 4.697 -1.118 1.953 1.00 0.00 N ATOM 168 CA MET 11 4.436 -0.003 1.057 1.00 0.00 C ATOM 169 C MET 11 3.742 1.108 1.830 1.00 0.00 C ATOM 170 O MET 11 4.011 2.290 1.607 1.00 0.00 O ATOM 171 CB MET 11 3.580 -0.431 -0.129 1.00 0.00 C ATOM 172 CG MET 11 4.256 -1.427 -1.066 1.00 0.00 C ATOM 173 SD MET 11 5.802 -0.843 -1.745 1.00 0.00 S ATOM 174 CE MET 11 6.910 -1.693 -0.628 1.00 0.00 C ATOM 184 N LYS 12 2.881 0.728 2.775 1.00 0.98 N ATOM 185 CA LYS 12 2.184 1.703 3.588 1.00 0.98 C ATOM 186 C LYS 12 3.170 2.497 4.411 1.00 0.98 C ATOM 187 O LYS 12 3.026 3.704 4.543 1.00 0.98 O ATOM 188 CB LYS 12 1.130 1.046 4.474 1.00 0.98 C ATOM 189 CG LYS 12 0.293 2.034 5.274 1.00 0.98 C ATOM 190 CD LYS 12 -0.852 1.338 5.986 1.00 0.98 C ATOM 191 CE LYS 12 -1.695 2.326 6.776 1.00 0.98 C ATOM 192 NZ LYS 12 -2.843 1.659 7.448 1.00 0.98 N ATOM 206 N LYS 13 4.197 1.836 4.951 1.00 0.42 N ATOM 207 CA LYS 13 5.197 2.556 5.732 1.00 0.42 C ATOM 208 C LYS 13 5.924 3.581 4.857 1.00 0.42 C ATOM 209 O LYS 13 6.081 4.744 5.245 1.00 0.42 O ATOM 210 CB LYS 13 6.231 1.580 6.299 1.00 0.42 C ATOM 211 CG LYS 13 5.754 0.659 7.416 1.00 0.42 C ATOM 212 CD LYS 13 6.876 -0.313 7.785 1.00 0.42 C ATOM 213 CE LYS 13 6.483 -1.290 8.874 1.00 0.42 C ATOM 214 NZ LYS 13 7.554 -2.312 9.091 1.00 0.42 N ATOM 228 N LYS 14 6.280 3.186 3.628 1.00 0.97 N ATOM 229 CA LYS 14 6.979 4.102 2.723 1.00 0.97 C ATOM 230 C LYS 14 6.117 5.317 2.404 1.00 0.97 C ATOM 231 O LYS 14 6.614 6.439 2.264 1.00 0.97 O ATOM 232 CB LYS 14 7.386 3.399 1.422 1.00 0.97 C ATOM 233 CG LYS 14 8.507 2.381 1.572 1.00 0.97 C ATOM 234 CD LYS 14 8.885 1.760 0.229 1.00 0.97 C ATOM 235 CE LYS 14 10.031 0.766 0.387 1.00 0.97 C ATOM 236 NZ LYS 14 10.469 0.195 -0.922 1.00 0.97 N ATOM 250 N PHE 15 4.817 5.085 2.325 1.00 0.53 N ATOM 251 CA PHE 15 3.824 6.090 2.024 1.00 0.53 C ATOM 252 C PHE 15 2.894 6.361 3.209 1.00 0.53 C ATOM 253 O PHE 15 1.727 6.697 3.028 1.00 0.53 O ATOM 254 CB PHE 15 3.080 5.651 0.773 1.00 0.53 C ATOM 255 CG PHE 15 3.995 5.686 -0.420 1.00 0.53 C ATOM 256 CD1 PHE 15 4.684 4.567 -0.827 1.00 0.53 C ATOM 257 CD2 PHE 15 4.174 6.853 -1.133 1.00 0.53 C ATOM 258 CE1 PHE 15 5.537 4.617 -1.916 1.00 0.53 C ATOM 259 CE2 PHE 15 5.009 6.900 -2.214 1.00 0.53 C ATOM 260 CZ PHE 15 5.692 5.781 -2.610 1.00 0.53 C ATOM 270 N LYS 16 3.447 6.323 4.427 1.00 0.32 N ATOM 271 CA LYS 16 2.702 6.584 5.668 1.00 0.32 C ATOM 272 C LYS 16 2.042 7.963 5.744 1.00 0.32 C ATOM 273 O LYS 16 1.136 8.181 6.548 1.00 0.32 O ATOM 274 CB LYS 16 3.631 6.403 6.866 1.00 0.32 C ATOM 275 CG LYS 16 4.747 7.438 6.961 1.00 0.32 C ATOM 276 CD LYS 16 5.679 7.135 8.117 1.00 0.32 C ATOM 277 CE LYS 16 6.778 8.180 8.230 1.00 0.32 C ATOM 278 NZ LYS 16 7.726 7.866 9.333 1.00 0.32 N ATOM 292 N ASN 17 2.503 8.898 4.917 1.00 0.97 N ATOM 293 CA ASN 17 1.977 10.258 4.876 1.00 0.97 C ATOM 294 C ASN 17 0.946 10.422 3.755 1.00 0.97 C ATOM 295 O ASN 17 0.532 11.538 3.433 1.00 0.97 O ATOM 296 CB ASN 17 3.112 11.243 4.690 1.00 0.97 C ATOM 297 CG ASN 17 4.034 11.299 5.887 1.00 0.97 C ATOM 298 OD1 ASN 17 3.597 11.229 7.040 1.00 0.97 O ATOM 299 ND2 ASN 17 5.312 11.427 5.627 1.00 0.97 N ATOM 306 N CYS 18 0.526 9.298 3.181 1.00 0.69 N ATOM 307 CA CYS 18 -0.400 9.261 2.061 1.00 0.69 C ATOM 308 C CYS 18 -1.586 8.343 2.364 1.00 0.69 C ATOM 309 O CYS 18 -1.591 7.633 3.370 1.00 0.69 O ATOM 310 CB CYS 18 0.314 8.726 0.828 1.00 0.69 C ATOM 311 SG CYS 18 1.867 9.601 0.385 1.00 0.69 S ATOM 316 N GLU 19 -2.619 8.366 1.518 1.00 0.67 N ATOM 317 CA GLU 19 -3.730 7.425 1.689 1.00 0.67 C ATOM 318 C GLU 19 -3.315 6.123 1.031 1.00 0.67 C ATOM 319 O GLU 19 -2.954 6.129 -0.145 1.00 0.67 O ATOM 320 CB GLU 19 -5.016 7.947 1.043 1.00 0.67 C ATOM 321 CG GLU 19 -6.242 7.033 1.217 1.00 0.67 C ATOM 322 CD GLU 19 -7.502 7.566 0.537 1.00 0.67 C ATOM 323 OE1 GLU 19 -7.461 8.650 0.001 1.00 0.67 O ATOM 324 OE2 GLU 19 -8.496 6.878 0.550 1.00 0.67 O ATOM 331 N VAL 20 -3.343 5.016 1.772 1.00 0.86 N ATOM 332 CA VAL 20 -2.875 3.752 1.204 1.00 0.86 C ATOM 333 C VAL 20 -3.935 2.641 1.284 1.00 0.86 C ATOM 334 O VAL 20 -4.450 2.350 2.367 1.00 0.86 O ATOM 335 CB VAL 20 -1.609 3.297 1.962 1.00 0.86 C ATOM 336 CG1 VAL 20 -1.106 2.007 1.362 1.00 0.86 C ATOM 337 CG2 VAL 20 -0.537 4.421 1.940 1.00 0.86 C ATOM 347 N ARG 21 -4.234 2.003 0.144 1.00 0.24 N ATOM 348 CA ARG 21 -5.208 0.908 0.079 1.00 0.24 C ATOM 349 C ARG 21 -4.577 -0.425 -0.325 1.00 0.24 C ATOM 350 O ARG 21 -3.959 -0.536 -1.384 1.00 0.24 O ATOM 351 CB ARG 21 -6.293 1.214 -0.948 1.00 0.24 C ATOM 352 CG ARG 21 -7.383 0.128 -1.108 1.00 0.24 C ATOM 353 CD ARG 21 -8.484 0.538 -2.075 1.00 0.24 C ATOM 354 NE ARG 21 -8.019 0.596 -3.484 1.00 0.24 N ATOM 355 CZ ARG 21 -8.050 -0.436 -4.364 1.00 0.24 C ATOM 356 NH1 ARG 21 -8.529 -1.616 -4.037 1.00 0.24 N ATOM 357 NH2 ARG 21 -7.587 -0.231 -5.572 1.00 0.24 N ATOM 371 N CYS 22 -4.760 -1.457 0.500 1.00 0.26 N ATOM 372 CA CYS 22 -4.219 -2.786 0.184 1.00 0.26 C ATOM 373 C CYS 22 -5.266 -3.637 -0.511 1.00 0.26 C ATOM 374 O CYS 22 -6.344 -3.863 0.046 1.00 0.26 O ATOM 375 CB CYS 22 -3.779 -3.532 1.435 1.00 0.26 C ATOM 376 SG CYS 22 -3.053 -5.202 1.099 1.00 0.26 S ATOM 381 N ASP 23 -4.974 -4.088 -1.725 1.00 0.01 N ATOM 382 CA ASP 23 -5.930 -4.884 -2.469 1.00 0.01 C ATOM 383 C ASP 23 -5.519 -6.341 -2.618 1.00 0.01 C ATOM 384 O ASP 23 -4.689 -6.702 -3.468 1.00 0.01 O ATOM 385 CB ASP 23 -6.165 -4.263 -3.829 1.00 0.01 C ATOM 386 CG ASP 23 -7.240 -4.959 -4.650 1.00 0.01 C ATOM 387 OD1 ASP 23 -7.490 -6.165 -4.475 1.00 0.01 O ATOM 388 OD2 ASP 23 -7.853 -4.273 -5.441 1.00 0.01 O ATOM 393 N GLU 24 -6.153 -7.185 -1.818 1.00 0.15 N ATOM 394 CA GLU 24 -5.856 -8.605 -1.754 1.00 0.15 C ATOM 395 C GLU 24 -6.271 -9.376 -3.010 1.00 0.15 C ATOM 396 O GLU 24 -5.852 -10.521 -3.184 1.00 0.15 O ATOM 397 CB GLU 24 -6.543 -9.241 -0.547 1.00 0.15 C ATOM 398 CG GLU 24 -6.046 -8.760 0.809 1.00 0.15 C ATOM 399 CD GLU 24 -6.732 -9.488 1.946 1.00 0.15 C ATOM 400 OE1 GLU 24 -7.418 -10.444 1.674 1.00 0.15 O ATOM 401 OE2 GLU 24 -6.595 -9.077 3.078 1.00 0.15 O ATOM 408 N SER 25 -7.178 -8.811 -3.825 1.00 0.14 N ATOM 409 CA SER 25 -7.650 -9.545 -4.996 1.00 0.14 C ATOM 410 C SER 25 -6.824 -9.197 -6.227 1.00 0.14 C ATOM 411 O SER 25 -6.642 -10.031 -7.119 1.00 0.14 O ATOM 412 CB SER 25 -9.120 -9.250 -5.251 1.00 0.14 C ATOM 413 OG SER 25 -9.335 -7.909 -5.632 1.00 0.14 O ATOM 419 N ASN 26 -6.280 -7.980 -6.254 1.00 0.25 N ATOM 420 CA ASN 26 -5.435 -7.569 -7.368 1.00 0.25 C ATOM 421 C ASN 26 -3.959 -7.627 -6.997 1.00 0.25 C ATOM 422 O ASN 26 -3.096 -7.384 -7.840 1.00 0.25 O ATOM 423 CB ASN 26 -5.811 -6.189 -7.888 1.00 0.25 C ATOM 424 CG ASN 26 -7.145 -6.156 -8.623 1.00 0.25 C ATOM 425 OD1 ASN 26 -7.233 -6.692 -9.738 1.00 0.25 O ATOM 426 ND2 ASN 26 -8.158 -5.546 -8.051 1.00 0.25 N ATOM 433 N HIS 27 -3.670 -8.004 -5.748 1.00 0.72 N ATOM 434 CA HIS 27 -2.305 -8.150 -5.254 1.00 0.72 C ATOM 435 C HIS 27 -1.512 -6.878 -5.447 1.00 0.72 C ATOM 436 O HIS 27 -0.378 -6.893 -5.937 1.00 0.72 O ATOM 437 CB HIS 27 -1.617 -9.334 -5.921 1.00 0.72 C ATOM 438 CG HIS 27 -2.354 -10.599 -5.679 1.00 0.72 C ATOM 439 ND1 HIS 27 -2.418 -11.193 -4.434 1.00 0.72 N ATOM 440 CD2 HIS 27 -3.075 -11.385 -6.512 1.00 0.72 C ATOM 441 CE1 HIS 27 -3.143 -12.293 -4.517 1.00 0.72 C ATOM 442 NE2 HIS 27 -3.550 -12.434 -5.768 1.00 0.72 N ATOM 450 N CYS 28 -2.116 -5.762 -5.062 1.00 0.61 N ATOM 451 CA CYS 28 -1.451 -4.481 -5.231 1.00 0.61 C ATOM 452 C CYS 28 -1.860 -3.434 -4.220 1.00 0.61 C ATOM 453 O CYS 28 -2.827 -3.601 -3.475 1.00 0.61 O ATOM 454 CB CYS 28 -1.722 -3.932 -6.630 1.00 0.61 C ATOM 455 SG CYS 28 -3.458 -3.548 -6.931 1.00 0.61 S ATOM 461 N VAL 29 -1.121 -2.335 -4.217 1.00 1.00 N ATOM 462 CA VAL 29 -1.393 -1.207 -3.351 1.00 1.00 C ATOM 463 C VAL 29 -1.654 0.085 -4.108 1.00 1.00 C ATOM 464 O VAL 29 -0.873 0.492 -4.978 1.00 1.00 O ATOM 465 CB VAL 29 -0.203 -0.982 -2.427 1.00 1.00 C ATOM 466 CG1 VAL 29 -0.420 0.223 -1.568 1.00 1.00 C ATOM 467 CG2 VAL 29 0.007 -2.142 -1.590 1.00 1.00 C ATOM 477 N GLU 30 -2.754 0.743 -3.765 1.00 0.44 N ATOM 478 CA GLU 30 -3.072 2.035 -4.362 1.00 0.44 C ATOM 479 C GLU 30 -2.709 3.148 -3.396 1.00 0.44 C ATOM 480 O GLU 30 -3.167 3.145 -2.249 1.00 0.44 O ATOM 481 CB GLU 30 -4.562 2.144 -4.731 1.00 0.44 C ATOM 482 CG GLU 30 -4.961 3.495 -5.359 1.00 0.44 C ATOM 483 CD GLU 30 -6.446 3.625 -5.698 1.00 0.44 C ATOM 484 OE1 GLU 30 -7.184 2.676 -5.543 1.00 0.44 O ATOM 485 OE2 GLU 30 -6.847 4.708 -6.096 1.00 0.44 O ATOM 492 N VAL 31 -1.889 4.098 -3.839 1.00 0.43 N ATOM 493 CA VAL 31 -1.548 5.215 -2.968 1.00 0.43 C ATOM 494 C VAL 31 -1.959 6.542 -3.574 1.00 0.43 C ATOM 495 O VAL 31 -1.610 6.851 -4.714 1.00 0.43 O ATOM 496 CB VAL 31 -0.050 5.271 -2.666 1.00 0.43 C ATOM 497 CG1 VAL 31 0.256 6.463 -1.788 1.00 0.43 C ATOM 498 CG2 VAL 31 0.368 4.034 -2.022 1.00 0.43 C ATOM 508 N ARG 32 -2.677 7.344 -2.794 1.00 0.54 N ATOM 509 CA ARG 32 -3.116 8.668 -3.232 1.00 0.54 C ATOM 510 C ARG 32 -2.401 9.686 -2.361 1.00 0.54 C ATOM 511 O ARG 32 -2.461 9.615 -1.126 1.00 0.54 O ATOM 512 CB ARG 32 -4.621 8.807 -3.098 1.00 0.54 C ATOM 513 CG ARG 32 -5.422 7.819 -3.921 1.00 0.54 C ATOM 514 CD ARG 32 -6.878 7.949 -3.672 1.00 0.54 C ATOM 515 NE ARG 32 -7.631 6.955 -4.411 1.00 0.54 N ATOM 516 CZ ARG 32 -8.962 6.818 -4.391 1.00 0.54 C ATOM 517 NH1 ARG 32 -9.717 7.621 -3.668 1.00 0.54 N ATOM 518 NH2 ARG 32 -9.487 5.857 -5.117 1.00 0.54 N ATOM 532 N CYS 33 -1.708 10.644 -2.960 1.00 0.10 N ATOM 533 CA CYS 33 -0.908 11.482 -2.095 1.00 0.10 C ATOM 534 C CYS 33 -0.745 12.903 -2.634 1.00 0.10 C ATOM 535 O CYS 33 0.260 13.241 -3.278 1.00 0.10 O ATOM 536 CB CYS 33 0.450 10.821 -1.929 1.00 0.10 C ATOM 537 SG CYS 33 1.350 11.369 -0.509 1.00 0.10 S ATOM 542 N SER 34 -1.775 13.718 -2.408 1.00 0.02 N ATOM 543 CA SER 34 -1.829 15.095 -2.890 1.00 0.02 C ATOM 544 C SER 34 -1.728 15.184 -4.411 1.00 0.02 C ATOM 545 O SER 34 -2.680 14.848 -5.113 1.00 0.02 O ATOM 546 CB SER 34 -0.759 15.935 -2.204 1.00 0.02 C ATOM 547 OG SER 34 -0.992 17.305 -2.409 1.00 0.02 O ATOM 553 N ASP 35 -0.586 15.628 -4.926 1.00 0.63 N ATOM 554 CA ASP 35 -0.418 15.799 -6.361 1.00 0.63 C ATOM 555 C ASP 35 0.077 14.535 -7.068 1.00 0.63 C ATOM 556 O ASP 35 0.244 14.531 -8.289 1.00 0.63 O ATOM 557 CB ASP 35 0.569 16.933 -6.627 1.00 0.63 C ATOM 558 CG ASP 35 0.047 18.274 -6.134 1.00 0.63 C ATOM 559 OD1 ASP 35 -1.146 18.410 -5.991 1.00 0.63 O ATOM 560 OD2 ASP 35 0.841 19.143 -5.893 1.00 0.63 O ATOM 565 N THR 36 0.326 13.468 -6.304 1.00 0.20 N ATOM 566 CA THR 36 0.838 12.238 -6.891 1.00 0.20 C ATOM 567 C THR 36 -0.041 11.015 -6.613 1.00 0.20 C ATOM 568 O THR 36 -0.954 11.048 -5.777 1.00 0.20 O ATOM 569 CB THR 36 2.278 11.982 -6.404 1.00 0.20 C ATOM 570 OG1 THR 36 2.292 11.776 -4.981 1.00 0.20 O ATOM 571 CG2 THR 36 3.169 13.163 -6.736 1.00 0.20 C ATOM 579 N LYS 37 0.236 9.937 -7.349 1.00 0.59 N ATOM 580 CA LYS 37 -0.461 8.660 -7.211 1.00 0.59 C ATOM 581 C LYS 37 0.500 7.527 -7.555 1.00 0.59 C ATOM 582 O LYS 37 1.291 7.652 -8.493 1.00 0.59 O ATOM 583 CB LYS 37 -1.709 8.614 -8.101 1.00 0.59 C ATOM 584 CG LYS 37 -2.581 7.365 -7.915 1.00 0.59 C ATOM 585 CD LYS 37 -3.865 7.439 -8.733 1.00 0.59 C ATOM 586 CE LYS 37 -4.735 6.204 -8.497 1.00 0.59 C ATOM 587 NZ LYS 37 -5.997 6.249 -9.293 1.00 0.59 N ATOM 601 N TYR 38 0.457 6.439 -6.780 1.00 0.68 N ATOM 602 CA TYR 38 1.383 5.332 -7.015 1.00 0.68 C ATOM 603 C TYR 38 0.684 3.973 -7.072 1.00 0.68 C ATOM 604 O TYR 38 -0.319 3.744 -6.384 1.00 0.68 O ATOM 605 CB TYR 38 2.396 5.276 -5.868 1.00 0.68 C ATOM 606 CG TYR 38 3.039 6.591 -5.593 1.00 0.68 C ATOM 607 CD1 TYR 38 2.368 7.482 -4.765 1.00 0.68 C ATOM 608 CD2 TYR 38 4.258 6.934 -6.135 1.00 0.68 C ATOM 609 CE1 TYR 38 2.887 8.698 -4.494 1.00 0.68 C ATOM 610 CE2 TYR 38 4.794 8.182 -5.854 1.00 0.68 C ATOM 611 CZ TYR 38 4.099 9.060 -5.039 1.00 0.68 C ATOM 612 OH TYR 38 4.596 10.303 -4.760 1.00 0.68 O ATOM 622 N THR 39 1.263 3.052 -7.847 1.00 0.05 N ATOM 623 CA THR 39 0.832 1.654 -7.819 1.00 0.05 C ATOM 624 C THR 39 2.015 0.863 -7.297 1.00 0.05 C ATOM 625 O THR 39 3.081 0.833 -7.917 1.00 0.05 O ATOM 626 CB THR 39 0.402 1.120 -9.192 1.00 0.05 C ATOM 627 OG1 THR 39 -0.690 1.903 -9.698 1.00 0.05 O ATOM 628 CG2 THR 39 -0.052 -0.338 -9.033 1.00 0.05 C ATOM 636 N LEU 40 1.841 0.287 -6.123 1.00 0.00 N ATOM 637 CA LEU 40 2.925 -0.369 -5.412 1.00 0.00 C ATOM 638 C LEU 40 2.640 -1.842 -5.138 1.00 0.00 C ATOM 639 O LEU 40 1.480 -2.254 -5.198 1.00 0.00 O ATOM 640 CB LEU 40 3.135 0.371 -4.112 1.00 0.00 C ATOM 641 CG LEU 40 3.298 1.839 -4.223 1.00 0.00 C ATOM 642 CD1 LEU 40 3.286 2.363 -2.893 1.00 0.00 C ATOM 643 CD2 LEU 40 4.585 2.193 -4.918 1.00 0.00 C ATOM 655 N CYS 41 3.699 -2.611 -4.819 1.00 0.06 N ATOM 656 CA CYS 41 3.656 -4.027 -4.378 1.00 0.06 C ATOM 657 C CYS 41 4.592 -4.875 -5.224 1.00 0.06 C ATOM 658 O CYS 41 4.566 -4.774 -6.451 1.00 0.06 O ATOM 659 OXT CYS 41 5.587 -5.355 -4.682 1.00 0.06 O ATOM 660 CB CYS 41 2.242 -4.638 -4.420 1.00 0.06 C ATOM 661 SG CYS 41 2.074 -6.342 -3.824 1.00 0.06 S TER END