####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS377_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.52 1.52 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.52 1.52 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 8 - 33 0.97 1.68 LCS_AVERAGE: 56.51 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 4 4 21 33 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 18 41 41 8 14 29 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 18 41 41 8 14 28 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 18 41 41 8 14 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 18 41 41 8 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 18 41 41 8 17 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 18 41 41 8 14 27 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 26 41 41 8 14 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 26 41 41 7 18 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 26 41 41 8 14 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 26 41 41 6 15 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 26 41 41 6 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 26 41 41 6 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 26 41 41 6 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 26 41 41 4 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 26 41 41 3 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 26 41 41 4 18 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 26 41 41 4 18 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 26 41 41 4 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 26 41 41 6 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 26 41 41 6 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 26 41 41 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 26 41 41 3 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 25 41 41 3 6 19 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 25 41 41 3 18 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 25 41 41 5 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 25 41 41 6 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 22 41 41 6 17 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 22 41 41 6 17 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 13 41 41 6 12 22 32 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 0 7 13 21 26 38 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 85.50 ( 56.51 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 22 30 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 24.39 53.66 73.17 92.68 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.36 0.71 0.97 1.24 1.29 1.40 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 GDT RMS_ALL_AT 2.02 1.73 1.58 1.54 1.53 1.53 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.633 0 0.293 0.315 6.135 10.909 7.273 5.912 LGA Q 2 Q 2 1.572 0 0.226 1.180 4.274 58.182 39.192 4.274 LGA E 3 E 3 1.891 0 0.036 1.498 7.391 50.909 27.071 6.179 LGA T 4 T 4 1.706 0 0.027 1.093 3.843 50.909 45.195 3.843 LGA R 5 R 5 1.019 0 0.024 1.422 7.113 65.455 37.851 5.582 LGA K 6 K 6 1.086 0 0.026 1.177 6.765 65.455 37.576 6.765 LGA K 7 K 7 1.949 0 0.067 0.639 2.981 47.727 42.828 1.896 LGA C 8 C 8 1.954 0 0.120 0.616 3.086 54.545 45.758 3.086 LGA T 9 T 9 0.992 0 0.041 0.089 1.332 77.727 79.481 0.729 LGA E 10 E 10 0.721 0 0.024 0.974 6.285 81.818 44.040 6.285 LGA M 11 M 11 1.768 0 0.048 0.869 2.956 54.545 47.045 1.462 LGA K 12 K 12 2.042 0 0.041 0.641 2.314 44.545 53.535 1.934 LGA K 13 K 13 1.340 0 0.014 0.607 1.938 61.818 64.444 0.318 LGA K 14 K 14 0.955 0 0.022 0.625 2.690 69.545 72.323 2.690 LGA F 15 F 15 1.249 0 0.142 0.519 3.014 73.636 59.669 2.428 LGA K 16 K 16 0.953 0 0.024 0.928 3.757 77.727 55.758 3.757 LGA N 17 N 17 0.667 0 0.180 0.465 2.038 86.364 76.591 2.038 LGA C 18 C 18 0.592 0 0.023 0.027 0.857 81.818 81.818 0.839 LGA E 19 E 19 0.711 0 0.197 0.406 2.258 81.818 73.333 1.100 LGA V 20 V 20 1.286 0 0.047 0.070 1.415 65.455 65.455 1.394 LGA R 21 R 21 1.147 0 0.133 1.083 5.546 61.818 34.711 5.366 LGA C 22 C 22 1.181 0 0.155 0.895 3.737 73.636 59.394 3.737 LGA D 23 D 23 0.767 0 0.322 1.389 4.942 57.727 45.455 2.190 LGA E 24 E 24 0.956 0 0.064 0.596 4.843 73.636 43.232 4.843 LGA S 25 S 25 1.278 0 0.160 0.699 1.831 82.273 74.242 1.091 LGA N 26 N 26 0.446 0 0.030 1.174 4.280 90.909 65.909 4.280 LGA H 27 H 27 0.737 0 0.071 0.286 1.860 82.273 67.818 1.860 LGA C 28 C 28 0.546 0 0.046 0.779 3.313 86.364 74.242 3.313 LGA V 29 V 29 1.133 0 0.062 0.134 1.350 65.455 65.455 1.204 LGA E 30 E 30 1.126 0 0.020 0.622 2.656 65.455 52.121 2.280 LGA V 31 V 31 1.234 0 0.118 0.180 1.413 65.455 65.455 1.287 LGA R 32 R 32 1.056 0 0.106 0.989 7.551 73.636 41.322 7.551 LGA C 33 C 33 0.843 0 0.492 0.558 3.093 61.818 68.485 0.806 LGA S 34 S 34 1.962 0 0.540 0.815 4.604 32.727 32.727 2.696 LGA D 35 D 35 1.615 0 0.205 1.033 5.159 51.364 37.727 5.159 LGA T 36 T 36 1.724 0 0.231 1.128 2.810 51.364 45.974 2.810 LGA K 37 K 37 0.659 0 0.066 1.267 3.212 77.727 66.263 3.212 LGA Y 38 Y 38 1.182 0 0.024 1.319 5.161 77.727 45.909 5.161 LGA T 39 T 39 1.101 0 0.185 1.067 3.677 50.000 43.377 3.677 LGA L 40 L 40 2.286 0 0.201 1.035 4.789 55.455 33.409 4.789 LGA C 41 C 41 3.895 0 0.389 0.757 7.520 26.818 17.922 7.520 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.519 1.583 2.500 64.013 52.131 30.200 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.52 86.585 93.357 2.533 LGA_LOCAL RMSD: 1.519 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.519 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.519 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.857327 * X + -0.501217 * Y + -0.117354 * Z + 2.185312 Y_new = 0.420391 * X + -0.550134 * Y + -0.721543 * Z + 0.927820 Z_new = 0.297089 * X + -0.667933 * Y + 0.682352 * Z + 5.843534 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.685695 -0.301643 -0.774720 [DEG: 153.8790 -17.2829 -44.3882 ] ZXZ: -0.161231 0.819821 2.723080 [DEG: -9.2379 46.9723 156.0210 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS377_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.52 93.357 1.52 REMARK ---------------------------------------------------------- MOLECULE T0955TS377_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -4.322 -13.186 0.683 1.00 0.50 N ATOM 2 CA SER 1 -3.004 -12.985 0.091 1.00 0.50 C ATOM 3 C SER 1 -2.052 -12.397 1.124 1.00 0.50 C ATOM 4 O SER 1 -1.675 -11.223 1.045 1.00 0.50 O ATOM 5 CB SER 1 -3.105 -12.059 -1.099 1.00 0.50 C ATOM 6 OG SER 1 -3.934 -12.606 -2.082 1.00 0.50 O ATOM 14 N GLN 2 -1.604 -13.233 2.062 1.00 0.73 N ATOM 15 CA GLN 2 -0.726 -12.766 3.134 1.00 0.73 C ATOM 16 C GLN 2 0.595 -12.195 2.633 1.00 0.73 C ATOM 17 O GLN 2 1.087 -11.210 3.178 1.00 0.73 O ATOM 18 CB GLN 2 -0.422 -13.902 4.113 1.00 0.73 C ATOM 19 CG GLN 2 -1.602 -14.335 4.966 1.00 0.73 C ATOM 20 CD GLN 2 -1.261 -15.508 5.873 1.00 0.73 C ATOM 21 OE1 GLN 2 -0.352 -16.292 5.584 1.00 0.73 O ATOM 22 NE2 GLN 2 -1.990 -15.634 6.978 1.00 0.73 N ATOM 31 N GLU 3 1.166 -12.767 1.572 1.00 0.82 N ATOM 32 CA GLU 3 2.438 -12.228 1.099 1.00 0.82 C ATOM 33 C GLU 3 2.243 -10.806 0.567 1.00 0.82 C ATOM 34 O GLU 3 3.100 -9.933 0.760 1.00 0.82 O ATOM 35 CB GLU 3 3.040 -13.131 0.020 1.00 0.82 C ATOM 36 CG GLU 3 3.499 -14.513 0.529 1.00 0.82 C ATOM 37 CD GLU 3 4.595 -14.449 1.579 1.00 0.82 C ATOM 38 OE1 GLU 3 5.586 -13.805 1.353 1.00 0.82 O ATOM 39 OE2 GLU 3 4.424 -15.050 2.627 1.00 0.82 O ATOM 46 N THR 4 1.100 -10.562 -0.081 1.00 0.18 N ATOM 47 CA THR 4 0.807 -9.235 -0.591 1.00 0.18 C ATOM 48 C THR 4 0.613 -8.279 0.558 1.00 0.18 C ATOM 49 O THR 4 1.144 -7.170 0.534 1.00 0.18 O ATOM 50 CB THR 4 -0.444 -9.205 -1.491 1.00 0.18 C ATOM 51 OG1 THR 4 -0.205 -10.025 -2.665 1.00 0.18 O ATOM 52 CG2 THR 4 -0.780 -7.751 -1.888 1.00 0.18 C ATOM 60 N ARG 5 -0.154 -8.700 1.566 1.00 0.18 N ATOM 61 CA ARG 5 -0.392 -7.809 2.682 1.00 0.18 C ATOM 62 C ARG 5 0.875 -7.484 3.472 1.00 0.18 C ATOM 63 O ARG 5 1.084 -6.343 3.902 1.00 0.18 O ATOM 64 CB ARG 5 -1.501 -8.275 3.588 1.00 0.18 C ATOM 65 CG ARG 5 -1.799 -7.232 4.661 1.00 0.18 C ATOM 66 CD ARG 5 -3.024 -7.490 5.403 1.00 0.18 C ATOM 67 NE ARG 5 -4.166 -7.340 4.527 1.00 0.18 N ATOM 68 CZ ARG 5 -4.711 -6.168 4.152 1.00 0.18 C ATOM 69 NH1 ARG 5 -4.221 -5.015 4.570 1.00 0.18 N ATOM 70 NH2 ARG 5 -5.743 -6.217 3.351 1.00 0.18 N ATOM 84 N LYS 6 1.743 -8.466 3.691 1.00 0.11 N ATOM 85 CA LYS 6 2.967 -8.160 4.418 1.00 0.11 C ATOM 86 C LYS 6 3.792 -7.137 3.637 1.00 0.11 C ATOM 87 O LYS 6 4.352 -6.194 4.212 1.00 0.11 O ATOM 88 CB LYS 6 3.777 -9.430 4.663 1.00 0.11 C ATOM 89 CG LYS 6 3.184 -10.375 5.708 1.00 0.11 C ATOM 90 CD LYS 6 4.123 -11.535 5.992 1.00 0.11 C ATOM 91 CE LYS 6 4.150 -12.490 4.809 1.00 0.11 C ATOM 92 NZ LYS 6 4.973 -13.709 5.065 1.00 0.11 N ATOM 106 N LYS 7 3.818 -7.279 2.310 1.00 0.30 N ATOM 107 CA LYS 7 4.576 -6.353 1.497 1.00 0.30 C ATOM 108 C LYS 7 3.908 -4.978 1.501 1.00 0.30 C ATOM 109 O LYS 7 4.589 -3.962 1.676 1.00 0.30 O ATOM 110 CB LYS 7 4.739 -6.899 0.076 1.00 0.30 C ATOM 111 CG LYS 7 5.672 -6.085 -0.836 1.00 0.30 C ATOM 112 CD LYS 7 5.871 -6.799 -2.187 1.00 0.30 C ATOM 113 CE LYS 7 6.895 -6.075 -3.086 1.00 0.30 C ATOM 114 NZ LYS 7 6.978 -6.693 -4.455 1.00 0.30 N ATOM 128 N CYS 8 2.568 -4.917 1.365 1.00 0.17 N ATOM 129 CA CYS 8 1.944 -3.601 1.320 1.00 0.17 C ATOM 130 C CYS 8 2.027 -2.910 2.662 1.00 0.17 C ATOM 131 O CYS 8 2.010 -1.687 2.724 1.00 0.17 O ATOM 132 CB CYS 8 0.475 -3.655 0.896 1.00 0.17 C ATOM 133 SG CYS 8 -0.684 -4.264 2.102 1.00 0.17 S ATOM 138 N THR 9 2.153 -3.671 3.745 1.00 0.59 N ATOM 139 CA THR 9 2.284 -3.051 5.045 1.00 0.59 C ATOM 140 C THR 9 3.595 -2.278 5.107 1.00 0.59 C ATOM 141 O THR 9 3.619 -1.105 5.494 1.00 0.59 O ATOM 142 CB THR 9 2.235 -4.097 6.165 1.00 0.59 C ATOM 143 OG1 THR 9 0.967 -4.774 6.124 1.00 0.59 O ATOM 144 CG2 THR 9 2.426 -3.423 7.511 1.00 0.59 C ATOM 152 N GLU 10 4.691 -2.907 4.682 1.00 0.85 N ATOM 153 CA GLU 10 5.957 -2.190 4.724 1.00 0.85 C ATOM 154 C GLU 10 5.977 -1.034 3.718 1.00 0.85 C ATOM 155 O GLU 10 6.493 0.054 4.009 1.00 0.85 O ATOM 156 CB GLU 10 7.122 -3.151 4.495 1.00 0.85 C ATOM 157 CG GLU 10 7.346 -4.134 5.664 1.00 0.85 C ATOM 158 CD GLU 10 7.703 -3.432 6.971 1.00 0.85 C ATOM 159 OE1 GLU 10 8.616 -2.643 6.968 1.00 0.85 O ATOM 160 OE2 GLU 10 7.054 -3.684 7.971 1.00 0.85 O ATOM 167 N MET 11 5.370 -1.237 2.549 1.00 0.74 N ATOM 168 CA MET 11 5.359 -0.155 1.583 1.00 0.74 C ATOM 169 C MET 11 4.453 0.984 2.084 1.00 0.74 C ATOM 170 O MET 11 4.764 2.158 1.886 1.00 0.74 O ATOM 171 CB MET 11 4.920 -0.670 0.222 1.00 0.74 C ATOM 172 CG MET 11 5.873 -1.618 -0.468 1.00 0.74 C ATOM 173 SD MET 11 7.495 -0.910 -0.674 1.00 0.74 S ATOM 174 CE MET 11 7.097 0.502 -1.701 1.00 0.74 C ATOM 184 N LYS 12 3.378 0.638 2.801 1.00 0.59 N ATOM 185 CA LYS 12 2.470 1.612 3.394 1.00 0.59 C ATOM 186 C LYS 12 3.225 2.510 4.339 1.00 0.59 C ATOM 187 O LYS 12 2.955 3.700 4.405 1.00 0.59 O ATOM 188 CB LYS 12 1.304 0.942 4.123 1.00 0.59 C ATOM 189 CG LYS 12 0.314 1.902 4.764 1.00 0.59 C ATOM 190 CD LYS 12 -0.871 1.148 5.356 1.00 0.59 C ATOM 191 CE LYS 12 -1.861 2.093 6.018 1.00 0.59 C ATOM 192 NZ LYS 12 -3.013 1.358 6.623 1.00 0.59 N ATOM 206 N LYS 13 4.169 1.943 5.095 1.00 0.40 N ATOM 207 CA LYS 13 4.963 2.751 6.011 1.00 0.40 C ATOM 208 C LYS 13 5.782 3.781 5.220 1.00 0.40 C ATOM 209 O LYS 13 5.841 4.958 5.588 1.00 0.40 O ATOM 210 CB LYS 13 5.891 1.851 6.830 1.00 0.40 C ATOM 211 CG LYS 13 5.182 0.970 7.857 1.00 0.40 C ATOM 212 CD LYS 13 6.169 0.026 8.547 1.00 0.40 C ATOM 213 CE LYS 13 5.475 -0.881 9.554 1.00 0.40 C ATOM 214 NZ LYS 13 6.410 -1.900 10.123 1.00 0.40 N ATOM 228 N LYS 14 6.336 3.371 4.072 1.00 0.48 N ATOM 229 CA LYS 14 7.111 4.307 3.242 1.00 0.48 C ATOM 230 C LYS 14 6.205 5.441 2.750 1.00 0.48 C ATOM 231 O LYS 14 6.619 6.598 2.640 1.00 0.48 O ATOM 232 CB LYS 14 7.750 3.597 2.045 1.00 0.48 C ATOM 233 CG LYS 14 8.865 2.638 2.415 1.00 0.48 C ATOM 234 CD LYS 14 9.462 1.978 1.187 1.00 0.48 C ATOM 235 CE LYS 14 10.545 0.982 1.573 1.00 0.48 C ATOM 236 NZ LYS 14 11.140 0.311 0.384 1.00 0.48 N ATOM 250 N PHE 15 4.951 5.085 2.492 1.00 0.39 N ATOM 251 CA PHE 15 3.895 5.978 2.038 1.00 0.39 C ATOM 252 C PHE 15 2.890 6.317 3.141 1.00 0.39 C ATOM 253 O PHE 15 1.736 6.621 2.853 1.00 0.39 O ATOM 254 CB PHE 15 3.190 5.367 0.827 1.00 0.39 C ATOM 255 CG PHE 15 4.049 5.385 -0.385 1.00 0.39 C ATOM 256 CD1 PHE 15 4.814 4.303 -0.750 1.00 0.39 C ATOM 257 CD2 PHE 15 4.090 6.516 -1.172 1.00 0.39 C ATOM 258 CE1 PHE 15 5.610 4.357 -1.881 1.00 0.39 C ATOM 259 CE2 PHE 15 4.868 6.572 -2.291 1.00 0.39 C ATOM 260 CZ PHE 15 5.631 5.493 -2.653 1.00 0.39 C ATOM 270 N LYS 16 3.338 6.343 4.404 1.00 0.03 N ATOM 271 CA LYS 16 2.479 6.647 5.559 1.00 0.03 C ATOM 272 C LYS 16 1.775 8.003 5.513 1.00 0.03 C ATOM 273 O LYS 16 0.798 8.222 6.229 1.00 0.03 O ATOM 274 CB LYS 16 3.291 6.561 6.848 1.00 0.03 C ATOM 275 CG LYS 16 4.368 7.632 6.986 1.00 0.03 C ATOM 276 CD LYS 16 5.191 7.424 8.241 1.00 0.03 C ATOM 277 CE LYS 16 6.250 8.505 8.392 1.00 0.03 C ATOM 278 NZ LYS 16 7.098 8.285 9.596 1.00 0.03 N ATOM 292 N ASN 17 2.272 8.922 4.689 1.00 0.75 N ATOM 293 CA ASN 17 1.691 10.252 4.570 1.00 0.75 C ATOM 294 C ASN 17 0.694 10.325 3.406 1.00 0.75 C ATOM 295 O ASN 17 0.207 11.404 3.061 1.00 0.75 O ATOM 296 CB ASN 17 2.792 11.277 4.391 1.00 0.75 C ATOM 297 CG ASN 17 3.650 11.422 5.625 1.00 0.75 C ATOM 298 OD1 ASN 17 3.160 11.374 6.759 1.00 0.75 O ATOM 299 ND2 ASN 17 4.931 11.599 5.422 1.00 0.75 N ATOM 306 N CYS 18 0.398 9.169 2.814 1.00 0.11 N ATOM 307 CA CYS 18 -0.525 9.045 1.693 1.00 0.11 C ATOM 308 C CYS 18 -1.685 8.115 2.044 1.00 0.11 C ATOM 309 O CYS 18 -1.589 7.319 2.979 1.00 0.11 O ATOM 310 CB CYS 18 0.204 8.496 0.474 1.00 0.11 C ATOM 311 SG CYS 18 1.592 9.517 -0.085 1.00 0.11 S ATOM 316 N GLU 19 -2.795 8.200 1.319 1.00 0.49 N ATOM 317 CA GLU 19 -3.868 7.238 1.586 1.00 0.49 C ATOM 318 C GLU 19 -3.513 5.945 0.882 1.00 0.49 C ATOM 319 O GLU 19 -3.330 5.948 -0.331 1.00 0.49 O ATOM 320 CB GLU 19 -5.233 7.733 1.094 1.00 0.49 C ATOM 321 CG GLU 19 -6.390 6.777 1.400 1.00 0.49 C ATOM 322 CD GLU 19 -7.752 7.251 0.897 1.00 0.49 C ATOM 323 OE1 GLU 19 -7.876 8.371 0.436 1.00 0.49 O ATOM 324 OE2 GLU 19 -8.679 6.465 0.961 1.00 0.49 O ATOM 331 N VAL 20 -3.403 4.845 1.620 1.00 0.52 N ATOM 332 CA VAL 20 -2.988 3.586 1.000 1.00 0.52 C ATOM 333 C VAL 20 -4.083 2.518 1.100 1.00 0.52 C ATOM 334 O VAL 20 -4.558 2.206 2.196 1.00 0.52 O ATOM 335 CB VAL 20 -1.695 3.074 1.666 1.00 0.52 C ATOM 336 CG1 VAL 20 -1.285 1.787 1.032 1.00 0.52 C ATOM 337 CG2 VAL 20 -0.574 4.125 1.539 1.00 0.52 C ATOM 347 N ARG 21 -4.476 1.963 -0.050 1.00 0.32 N ATOM 348 CA ARG 21 -5.532 0.957 -0.130 1.00 0.32 C ATOM 349 C ARG 21 -5.020 -0.385 -0.653 1.00 0.32 C ATOM 350 O ARG 21 -4.819 -0.561 -1.857 1.00 0.32 O ATOM 351 CB ARG 21 -6.636 1.457 -1.048 1.00 0.32 C ATOM 352 CG ARG 21 -7.336 2.739 -0.584 1.00 0.32 C ATOM 353 CD ARG 21 -8.408 3.155 -1.533 1.00 0.32 C ATOM 354 NE ARG 21 -9.066 4.392 -1.121 1.00 0.32 N ATOM 355 CZ ARG 21 -10.098 4.967 -1.760 1.00 0.32 C ATOM 356 NH1 ARG 21 -10.608 4.426 -2.849 1.00 0.32 N ATOM 357 NH2 ARG 21 -10.589 6.087 -1.271 1.00 0.32 N ATOM 371 N CYS 22 -4.789 -1.329 0.260 1.00 0.06 N ATOM 372 CA CYS 22 -4.181 -2.621 -0.084 1.00 0.06 C ATOM 373 C CYS 22 -5.220 -3.687 -0.420 1.00 0.06 C ATOM 374 O CYS 22 -5.998 -4.082 0.450 1.00 0.06 O ATOM 375 CB CYS 22 -3.305 -3.058 1.104 1.00 0.06 C ATOM 376 SG CYS 22 -2.389 -4.625 0.956 1.00 0.06 S ATOM 381 N ASP 23 -5.253 -4.137 -1.689 1.00 0.32 N ATOM 382 CA ASP 23 -6.262 -5.103 -2.126 1.00 0.32 C ATOM 383 C ASP 23 -5.693 -6.487 -2.479 1.00 0.32 C ATOM 384 O ASP 23 -5.101 -6.718 -3.553 1.00 0.32 O ATOM 385 CB ASP 23 -7.066 -4.536 -3.294 1.00 0.32 C ATOM 386 CG ASP 23 -8.245 -5.425 -3.752 1.00 0.32 C ATOM 387 OD1 ASP 23 -8.282 -6.626 -3.460 1.00 0.32 O ATOM 388 OD2 ASP 23 -9.113 -4.879 -4.396 1.00 0.32 O ATOM 393 N GLU 24 -5.930 -7.421 -1.565 1.00 0.76 N ATOM 394 CA GLU 24 -5.438 -8.788 -1.635 1.00 0.76 C ATOM 395 C GLU 24 -5.980 -9.584 -2.822 1.00 0.76 C ATOM 396 O GLU 24 -5.400 -10.614 -3.182 1.00 0.76 O ATOM 397 CB GLU 24 -5.808 -9.539 -0.348 1.00 0.76 C ATOM 398 CG GLU 24 -5.061 -9.092 0.909 1.00 0.76 C ATOM 399 CD GLU 24 -5.455 -9.889 2.140 1.00 0.76 C ATOM 400 OE1 GLU 24 -5.440 -11.111 2.085 1.00 0.76 O ATOM 401 OE2 GLU 24 -5.779 -9.277 3.138 1.00 0.76 O ATOM 408 N SER 25 -7.131 -9.175 -3.383 1.00 0.22 N ATOM 409 CA SER 25 -7.708 -9.937 -4.485 1.00 0.22 C ATOM 410 C SER 25 -7.143 -9.497 -5.832 1.00 0.22 C ATOM 411 O SER 25 -7.316 -10.192 -6.837 1.00 0.22 O ATOM 412 CB SER 25 -9.230 -9.843 -4.484 1.00 0.22 C ATOM 413 OG SER 25 -9.692 -8.563 -4.823 1.00 0.22 O ATOM 419 N ASN 26 -6.471 -8.339 -5.855 1.00 0.21 N ATOM 420 CA ASN 26 -5.889 -7.823 -7.086 1.00 0.21 C ATOM 421 C ASN 26 -4.374 -7.896 -7.047 1.00 0.21 C ATOM 422 O ASN 26 -3.716 -7.772 -8.080 1.00 0.21 O ATOM 423 CB ASN 26 -6.325 -6.389 -7.352 1.00 0.21 C ATOM 424 CG ASN 26 -7.801 -6.253 -7.647 1.00 0.21 C ATOM 425 OD1 ASN 26 -8.400 -7.121 -8.294 1.00 0.21 O ATOM 426 ND2 ASN 26 -8.390 -5.169 -7.211 1.00 0.21 N ATOM 433 N HIS 27 -3.823 -8.093 -5.844 1.00 0.31 N ATOM 434 CA HIS 27 -2.381 -8.081 -5.620 1.00 0.31 C ATOM 435 C HIS 27 -1.834 -6.720 -6.011 1.00 0.31 C ATOM 436 O HIS 27 -0.780 -6.610 -6.640 1.00 0.31 O ATOM 437 CB HIS 27 -1.657 -9.183 -6.394 1.00 0.31 C ATOM 438 CG HIS 27 -2.122 -10.553 -6.066 1.00 0.31 C ATOM 439 ND1 HIS 27 -1.848 -11.171 -4.857 1.00 0.31 N ATOM 440 CD2 HIS 27 -2.847 -11.438 -6.791 1.00 0.31 C ATOM 441 CE1 HIS 27 -2.378 -12.385 -4.867 1.00 0.31 C ATOM 442 NE2 HIS 27 -2.989 -12.568 -6.029 1.00 0.31 N ATOM 450 N CYS 28 -2.581 -5.686 -5.635 1.00 0.05 N ATOM 451 CA CYS 28 -2.229 -4.308 -5.944 1.00 0.05 C ATOM 452 C CYS 28 -2.714 -3.361 -4.883 1.00 0.05 C ATOM 453 O CYS 28 -3.851 -3.462 -4.407 1.00 0.05 O ATOM 454 CB CYS 28 -2.816 -3.850 -7.275 1.00 0.05 C ATOM 455 SG CYS 28 -2.352 -2.128 -7.698 1.00 0.05 S ATOM 461 N VAL 29 -1.854 -2.421 -4.546 1.00 0.77 N ATOM 462 CA VAL 29 -2.177 -1.423 -3.558 1.00 0.77 C ATOM 463 C VAL 29 -2.195 -0.042 -4.174 1.00 0.77 C ATOM 464 O VAL 29 -1.222 0.340 -4.813 1.00 0.77 O ATOM 465 CB VAL 29 -1.059 -1.435 -2.571 1.00 0.77 C ATOM 466 CG1 VAL 29 -1.292 -0.468 -1.460 1.00 0.77 C ATOM 467 CG2 VAL 29 -0.799 -2.807 -2.153 1.00 0.77 C ATOM 477 N GLU 30 -3.262 0.725 -4.002 1.00 0.78 N ATOM 478 CA GLU 30 -3.229 2.068 -4.594 1.00 0.78 C ATOM 479 C GLU 30 -2.879 3.120 -3.546 1.00 0.78 C ATOM 480 O GLU 30 -3.304 3.026 -2.395 1.00 0.78 O ATOM 481 CB GLU 30 -4.540 2.410 -5.301 1.00 0.78 C ATOM 482 CG GLU 30 -4.837 1.519 -6.525 1.00 0.78 C ATOM 483 CD GLU 30 -6.044 1.966 -7.337 1.00 0.78 C ATOM 484 OE1 GLU 30 -6.645 2.964 -6.993 1.00 0.78 O ATOM 485 OE2 GLU 30 -6.345 1.333 -8.314 1.00 0.78 O ATOM 492 N VAL 31 -2.098 4.129 -3.948 1.00 0.71 N ATOM 493 CA VAL 31 -1.680 5.185 -3.033 1.00 0.71 C ATOM 494 C VAL 31 -2.024 6.600 -3.500 1.00 0.71 C ATOM 495 O VAL 31 -1.558 7.037 -4.555 1.00 0.71 O ATOM 496 CB VAL 31 -0.170 5.149 -2.913 1.00 0.71 C ATOM 497 CG1 VAL 31 0.280 6.170 -1.999 1.00 0.71 C ATOM 498 CG2 VAL 31 0.271 3.837 -2.525 1.00 0.71 C ATOM 508 N ARG 32 -2.778 7.349 -2.695 1.00 0.72 N ATOM 509 CA ARG 32 -3.116 8.726 -3.061 1.00 0.72 C ATOM 510 C ARG 32 -2.262 9.730 -2.296 1.00 0.72 C ATOM 511 O ARG 32 -2.377 9.856 -1.070 1.00 0.72 O ATOM 512 CB ARG 32 -4.574 9.025 -2.778 1.00 0.72 C ATOM 513 CG ARG 32 -5.039 10.415 -3.164 1.00 0.72 C ATOM 514 CD ARG 32 -6.502 10.582 -2.912 1.00 0.72 C ATOM 515 NE ARG 32 -6.821 10.503 -1.481 1.00 0.72 N ATOM 516 CZ ARG 32 -6.804 11.537 -0.627 1.00 0.72 C ATOM 517 NH1 ARG 32 -6.489 12.753 -1.029 1.00 0.72 N ATOM 518 NH2 ARG 32 -7.113 11.296 0.626 1.00 0.72 N ATOM 532 N CYS 33 -1.402 10.448 -3.007 1.00 0.39 N ATOM 533 CA CYS 33 -0.481 11.383 -2.366 1.00 0.39 C ATOM 534 C CYS 33 -0.772 12.788 -2.842 1.00 0.39 C ATOM 535 O CYS 33 -1.380 12.975 -3.896 1.00 0.39 O ATOM 536 CB CYS 33 0.970 11.040 -2.680 1.00 0.39 C ATOM 537 SG CYS 33 1.524 9.418 -2.115 1.00 0.39 S ATOM 542 N SER 34 -0.353 13.797 -2.094 1.00 0.00 N ATOM 543 CA SER 34 -0.604 15.139 -2.593 1.00 0.00 C ATOM 544 C SER 34 -0.021 15.272 -4.001 1.00 0.00 C ATOM 545 O SER 34 1.152 14.962 -4.226 1.00 0.00 O ATOM 546 CB SER 34 0.011 16.170 -1.662 1.00 0.00 C ATOM 547 OG SER 34 -0.189 17.479 -2.134 1.00 0.00 O ATOM 553 N ASP 35 -0.874 15.703 -4.933 1.00 0.69 N ATOM 554 CA ASP 35 -0.575 15.926 -6.354 1.00 0.69 C ATOM 555 C ASP 35 -0.183 14.691 -7.198 1.00 0.69 C ATOM 556 O ASP 35 0.195 14.859 -8.362 1.00 0.69 O ATOM 557 CB ASP 35 0.536 16.974 -6.479 1.00 0.69 C ATOM 558 CG ASP 35 0.123 18.319 -5.896 1.00 0.69 C ATOM 559 OD1 ASP 35 -0.982 18.743 -6.142 1.00 0.69 O ATOM 560 OD2 ASP 35 0.900 18.885 -5.166 1.00 0.69 O ATOM 565 N THR 36 -0.264 13.469 -6.655 1.00 0.77 N ATOM 566 CA THR 36 0.115 12.301 -7.459 1.00 0.77 C ATOM 567 C THR 36 -0.503 10.957 -7.005 1.00 0.77 C ATOM 568 O THR 36 -1.353 10.892 -6.109 1.00 0.77 O ATOM 569 CB THR 36 1.658 12.196 -7.540 1.00 0.77 C ATOM 570 OG1 THR 36 2.031 11.210 -8.520 1.00 0.77 O ATOM 571 CG2 THR 36 2.214 11.824 -6.208 1.00 0.77 C ATOM 579 N LYS 37 -0.075 9.877 -7.663 1.00 0.42 N ATOM 580 CA LYS 37 -0.578 8.538 -7.362 1.00 0.42 C ATOM 581 C LYS 37 0.470 7.454 -7.623 1.00 0.42 C ATOM 582 O LYS 37 1.175 7.480 -8.636 1.00 0.42 O ATOM 583 CB LYS 37 -1.862 8.250 -8.159 1.00 0.42 C ATOM 584 CG LYS 37 -2.557 6.938 -7.769 1.00 0.42 C ATOM 585 CD LYS 37 -3.915 6.765 -8.431 1.00 0.42 C ATOM 586 CE LYS 37 -4.595 5.501 -7.901 1.00 0.42 C ATOM 587 NZ LYS 37 -5.955 5.297 -8.470 1.00 0.42 N ATOM 601 N TYR 38 0.550 6.493 -6.702 1.00 0.63 N ATOM 602 CA TYR 38 1.497 5.376 -6.807 1.00 0.63 C ATOM 603 C TYR 38 0.798 4.041 -6.614 1.00 0.63 C ATOM 604 O TYR 38 -0.279 3.974 -6.020 1.00 0.63 O ATOM 605 CB TYR 38 2.592 5.462 -5.730 1.00 0.63 C ATOM 606 CG TYR 38 3.390 6.709 -5.720 1.00 0.63 C ATOM 607 CD1 TYR 38 2.930 7.790 -5.004 1.00 0.63 C ATOM 608 CD2 TYR 38 4.593 6.776 -6.390 1.00 0.63 C ATOM 609 CE1 TYR 38 3.676 8.945 -4.958 1.00 0.63 C ATOM 610 CE2 TYR 38 5.337 7.935 -6.347 1.00 0.63 C ATOM 611 CZ TYR 38 4.881 9.016 -5.631 1.00 0.63 C ATOM 612 OH TYR 38 5.625 10.173 -5.580 1.00 0.63 O ATOM 622 N THR 39 1.418 2.967 -7.089 1.00 0.40 N ATOM 623 CA THR 39 0.901 1.651 -6.739 1.00 0.40 C ATOM 624 C THR 39 1.996 0.898 -6.001 1.00 0.40 C ATOM 625 O THR 39 3.178 1.096 -6.291 1.00 0.40 O ATOM 626 CB THR 39 0.428 0.861 -7.974 1.00 0.40 C ATOM 627 OG1 THR 39 1.526 0.691 -8.886 1.00 0.40 O ATOM 628 CG2 THR 39 -0.726 1.579 -8.668 1.00 0.40 C ATOM 636 N LEU 40 1.610 0.033 -5.063 1.00 0.36 N ATOM 637 CA LEU 40 2.600 -0.708 -4.281 1.00 0.36 C ATOM 638 C LEU 40 2.428 -2.208 -4.493 1.00 0.36 C ATOM 639 O LEU 40 1.334 -2.666 -4.865 1.00 0.36 O ATOM 640 CB LEU 40 2.481 -0.367 -2.773 1.00 0.36 C ATOM 641 CG LEU 40 2.392 1.137 -2.477 1.00 0.36 C ATOM 642 CD1 LEU 40 2.130 1.415 -0.968 1.00 0.36 C ATOM 643 CD2 LEU 40 3.622 1.818 -2.919 1.00 0.36 C ATOM 655 N CYS 41 3.521 -2.929 -4.222 1.00 0.05 N ATOM 656 CA CYS 41 3.699 -4.388 -4.248 1.00 0.05 C ATOM 657 C CYS 41 4.292 -4.882 -5.560 1.00 0.05 C ATOM 658 O CYS 41 4.550 -6.084 -5.680 1.00 0.05 O ATOM 659 OXT CYS 41 4.989 -4.075 -6.168 1.00 0.05 O ATOM 660 CB CYS 41 2.437 -5.184 -3.892 1.00 0.05 C ATOM 661 SG CYS 41 1.959 -4.977 -2.184 1.00 0.05 S TER END