####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS377_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.79 1.79 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.79 1.79 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 18 - 33 0.97 1.98 LCS_AVERAGE: 31.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 13 41 41 3 4 15 26 36 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 14 41 41 12 14 20 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 14 41 41 12 14 19 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 14 41 41 12 14 21 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 14 41 41 12 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 14 41 41 12 14 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 14 41 41 12 14 21 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 14 41 41 12 14 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 14 41 41 12 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 14 41 41 12 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 14 41 41 12 14 23 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 14 41 41 12 14 24 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 14 41 41 12 14 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 14 41 41 5 14 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 14 41 41 4 14 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 6 41 41 4 6 9 13 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 6 41 41 4 10 21 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 16 41 41 6 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 16 41 41 3 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 16 41 41 3 15 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 16 41 41 3 15 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 16 41 41 3 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 16 41 41 3 13 25 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 16 41 41 3 15 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 16 41 41 7 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 16 41 41 7 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 16 41 41 7 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 16 41 41 5 15 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 16 41 41 5 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 16 41 41 4 13 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 16 41 41 4 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 16 41 41 7 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 16 41 41 3 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 8 41 41 3 10 23 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 8 41 41 3 10 23 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 8 41 41 7 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 8 41 41 7 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 41 41 6 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 41 41 7 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 41 41 6 15 25 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 0 4 12 20 25 34 39 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 77.24 ( 31.71 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 16 26 32 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 39.02 63.41 78.05 90.24 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.78 1.02 1.22 1.47 1.59 1.67 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 GDT RMS_ALL_AT 4.36 1.92 1.93 1.88 1.83 1.80 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 1.79 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.911 0 0.192 0.810 5.593 16.364 13.636 4.379 LGA Q 2 Q 2 2.162 0 0.232 1.198 4.221 48.182 31.515 4.221 LGA E 3 E 3 2.381 0 0.046 1.479 7.997 38.182 20.000 7.002 LGA T 4 T 4 2.042 0 0.036 1.094 4.336 44.545 41.039 4.336 LGA R 5 R 5 0.881 0 0.020 1.078 5.839 77.727 61.322 4.157 LGA K 6 K 6 1.008 0 0.015 1.262 7.938 73.636 41.212 7.882 LGA K 7 K 7 1.642 0 0.041 1.021 4.307 54.545 42.424 1.781 LGA C 8 C 8 1.671 0 0.028 0.758 4.602 54.545 45.152 4.602 LGA T 9 T 9 0.983 0 0.026 0.102 1.141 73.636 74.805 0.827 LGA E 10 E 10 0.732 0 0.048 0.980 6.123 73.636 41.212 6.032 LGA M 11 M 11 1.904 0 0.062 0.885 2.869 51.364 43.636 1.703 LGA K 12 K 12 2.193 0 0.064 0.820 4.778 38.636 35.960 4.778 LGA K 13 K 13 1.479 0 0.145 0.624 1.868 61.818 66.061 0.297 LGA K 14 K 14 1.294 0 0.130 0.665 2.993 61.818 59.596 2.993 LGA F 15 F 15 1.288 0 0.167 0.414 2.534 61.818 61.322 1.947 LGA K 16 K 16 3.502 0 0.018 1.230 7.171 18.636 10.303 7.171 LGA N 17 N 17 2.690 0 0.222 0.497 5.084 33.182 22.500 3.467 LGA C 18 C 18 0.487 0 0.095 0.125 1.770 95.455 85.758 1.770 LGA E 19 E 19 0.963 0 0.300 0.787 4.709 81.818 45.455 4.709 LGA V 20 V 20 1.839 0 0.165 1.132 3.791 47.727 39.740 2.122 LGA R 21 R 21 1.407 0 0.021 1.297 3.473 65.455 47.273 3.242 LGA C 22 C 22 1.341 0 0.181 0.953 4.614 61.818 50.000 4.614 LGA D 23 D 23 1.897 0 0.403 1.170 4.273 37.727 32.727 2.689 LGA E 24 E 24 1.158 0 0.060 0.641 4.067 65.909 45.455 4.067 LGA S 25 S 25 1.173 0 0.135 0.694 2.590 69.545 61.818 2.590 LGA N 26 N 26 0.994 0 0.187 1.173 4.971 69.545 52.045 4.971 LGA H 27 H 27 1.095 0 0.059 0.255 2.566 73.636 57.818 2.566 LGA C 28 C 28 0.930 0 0.172 0.756 2.335 77.727 69.091 2.335 LGA V 29 V 29 0.838 0 0.050 0.085 1.588 73.636 65.974 1.588 LGA E 30 E 30 1.466 0 0.071 0.631 2.643 61.818 50.303 2.643 LGA V 31 V 31 1.413 0 0.104 0.162 1.681 61.818 57.143 1.509 LGA R 32 R 32 1.308 0 0.082 1.168 5.585 73.636 41.983 5.585 LGA C 33 C 33 0.712 0 0.519 0.912 2.204 75.455 67.576 2.204 LGA S 34 S 34 2.314 0 0.270 0.741 3.946 31.818 32.121 2.481 LGA D 35 D 35 2.699 0 0.236 0.799 3.584 30.455 25.682 3.584 LGA T 36 T 36 1.698 0 0.257 1.145 2.943 51.364 45.974 2.943 LGA K 37 K 37 0.667 0 0.078 1.250 3.014 77.727 66.061 3.014 LGA Y 38 Y 38 1.122 0 0.025 1.330 4.338 73.636 47.879 4.338 LGA T 39 T 39 0.795 0 0.093 0.095 2.475 66.818 62.078 1.544 LGA L 40 L 40 2.091 0 0.203 1.013 3.783 51.818 35.227 3.783 LGA C 41 C 41 4.315 0 0.487 1.195 6.921 18.182 11.169 6.921 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.786 1.804 2.636 57.971 46.538 23.725 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.79 79.268 89.837 2.173 LGA_LOCAL RMSD: 1.786 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.786 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.786 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.841754 * X + -0.197902 * Y + 0.502280 * Z + -5.653517 Y_new = -0.329546 * X + -0.548575 * Y + -0.768417 * Z + -2.831669 Z_new = 0.427609 * X + -0.812343 * Y + 0.396548 * Z + 7.936151 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.768436 -0.441846 -1.116671 [DEG: -158.6197 -25.3159 -63.9805 ] ZXZ: 0.578941 1.163043 2.657056 [DEG: 33.1709 66.6375 152.2381 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS377_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.79 89.837 1.79 REMARK ---------------------------------------------------------- MOLECULE T0955TS377_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -4.152 -14.070 0.337 1.00 0.50 N ATOM 2 CA SER 1 -2.698 -13.949 0.311 1.00 0.50 C ATOM 3 C SER 1 -2.142 -13.114 1.448 1.00 0.50 C ATOM 4 O SER 1 -2.065 -11.880 1.361 1.00 0.50 O ATOM 5 CB SER 1 -2.236 -13.331 -0.991 1.00 0.50 C ATOM 6 OG SER 1 -0.818 -13.189 -1.010 1.00 0.50 O ATOM 14 N GLN 2 -1.664 -13.789 2.490 1.00 0.95 N ATOM 15 CA GLN 2 -1.089 -13.071 3.621 1.00 0.95 C ATOM 16 C GLN 2 0.144 -12.303 3.186 1.00 0.95 C ATOM 17 O GLN 2 0.370 -11.181 3.636 1.00 0.95 O ATOM 18 CB GLN 2 -0.711 -14.030 4.752 1.00 0.95 C ATOM 19 CG GLN 2 -1.887 -14.669 5.466 1.00 0.95 C ATOM 20 CD GLN 2 -1.442 -15.645 6.548 1.00 0.95 C ATOM 21 OE1 GLN 2 -0.326 -16.175 6.505 1.00 0.95 O ATOM 22 NE2 GLN 2 -2.313 -15.887 7.523 1.00 0.95 N ATOM 31 N GLU 3 0.919 -12.889 2.271 1.00 1.00 N ATOM 32 CA GLU 3 2.146 -12.250 1.827 1.00 1.00 C ATOM 33 C GLU 3 1.835 -10.950 1.087 1.00 1.00 C ATOM 34 O GLU 3 2.546 -9.955 1.254 1.00 1.00 O ATOM 35 CB GLU 3 2.949 -13.200 0.940 1.00 1.00 C ATOM 36 CG GLU 3 3.487 -14.449 1.675 1.00 1.00 C ATOM 37 CD GLU 3 4.432 -14.150 2.834 1.00 1.00 C ATOM 38 OE1 GLU 3 5.380 -13.432 2.652 1.00 1.00 O ATOM 39 OE2 GLU 3 4.182 -14.656 3.918 1.00 1.00 O ATOM 46 N THR 4 0.742 -10.911 0.312 1.00 0.98 N ATOM 47 CA THR 4 0.406 -9.662 -0.349 1.00 0.98 C ATOM 48 C THR 4 0.146 -8.598 0.697 1.00 0.98 C ATOM 49 O THR 4 0.680 -7.495 0.614 1.00 0.98 O ATOM 50 CB THR 4 -0.841 -9.802 -1.229 1.00 0.98 C ATOM 51 OG1 THR 4 -0.581 -10.764 -2.278 1.00 0.98 O ATOM 52 CG2 THR 4 -1.239 -8.457 -1.797 1.00 0.98 C ATOM 60 N ARG 5 -0.660 -8.932 1.704 1.00 0.23 N ATOM 61 CA ARG 5 -0.972 -7.954 2.736 1.00 0.23 C ATOM 62 C ARG 5 0.256 -7.534 3.548 1.00 0.23 C ATOM 63 O ARG 5 0.382 -6.363 3.944 1.00 0.23 O ATOM 64 CB ARG 5 -2.110 -8.445 3.602 1.00 0.23 C ATOM 65 CG ARG 5 -3.443 -8.389 2.851 1.00 0.23 C ATOM 66 CD ARG 5 -4.607 -8.771 3.657 1.00 0.23 C ATOM 67 NE ARG 5 -5.826 -8.691 2.865 1.00 0.23 N ATOM 68 CZ ARG 5 -6.525 -7.565 2.626 1.00 0.23 C ATOM 69 NH1 ARG 5 -6.140 -6.409 3.120 1.00 0.23 N ATOM 70 NH2 ARG 5 -7.604 -7.649 1.881 1.00 0.23 N ATOM 84 N LYS 6 1.195 -8.456 3.781 1.00 0.33 N ATOM 85 CA LYS 6 2.401 -8.066 4.501 1.00 0.33 C ATOM 86 C LYS 6 3.156 -7.033 3.670 1.00 0.33 C ATOM 87 O LYS 6 3.605 -6.006 4.192 1.00 0.33 O ATOM 88 CB LYS 6 3.314 -9.269 4.740 1.00 0.33 C ATOM 89 CG LYS 6 2.822 -10.294 5.752 1.00 0.33 C ATOM 90 CD LYS 6 3.792 -11.464 5.808 1.00 0.33 C ATOM 91 CE LYS 6 3.301 -12.586 6.699 1.00 0.33 C ATOM 92 NZ LYS 6 4.235 -13.753 6.651 1.00 0.33 N ATOM 106 N LYS 7 3.249 -7.275 2.354 1.00 0.23 N ATOM 107 CA LYS 7 3.928 -6.332 1.482 1.00 0.23 C ATOM 108 C LYS 7 3.177 -5.018 1.411 1.00 0.23 C ATOM 109 O LYS 7 3.790 -3.953 1.428 1.00 0.23 O ATOM 110 CB LYS 7 4.120 -6.872 0.069 1.00 0.23 C ATOM 111 CG LYS 7 5.158 -7.981 -0.079 1.00 0.23 C ATOM 112 CD LYS 7 5.279 -8.364 -1.539 1.00 0.23 C ATOM 113 CE LYS 7 5.973 -7.231 -2.303 1.00 0.23 C ATOM 114 NZ LYS 7 6.104 -7.500 -3.741 1.00 0.23 N ATOM 128 N CYS 8 1.841 -5.073 1.398 1.00 0.49 N ATOM 129 CA CYS 8 1.068 -3.844 1.322 1.00 0.49 C ATOM 130 C CYS 8 1.379 -2.942 2.511 1.00 0.49 C ATOM 131 O CYS 8 1.563 -1.731 2.356 1.00 0.49 O ATOM 132 CB CYS 8 -0.437 -4.138 1.326 1.00 0.49 C ATOM 133 SG CYS 8 -1.110 -4.922 -0.190 1.00 0.49 S ATOM 138 N THR 9 1.480 -3.552 3.694 1.00 0.67 N ATOM 139 CA THR 9 1.773 -2.821 4.913 1.00 0.67 C ATOM 140 C THR 9 3.168 -2.210 4.880 1.00 0.67 C ATOM 141 O THR 9 3.344 -1.021 5.180 1.00 0.67 O ATOM 142 CB THR 9 1.665 -3.741 6.139 1.00 0.67 C ATOM 143 OG1 THR 9 0.325 -4.248 6.245 1.00 0.67 O ATOM 144 CG2 THR 9 2.034 -2.974 7.392 1.00 0.67 C ATOM 152 N GLU 10 4.161 -3.005 4.487 1.00 0.94 N ATOM 153 CA GLU 10 5.521 -2.498 4.469 1.00 0.94 C ATOM 154 C GLU 10 5.687 -1.393 3.434 1.00 0.94 C ATOM 155 O GLU 10 6.443 -0.445 3.645 1.00 0.94 O ATOM 156 CB GLU 10 6.520 -3.632 4.254 1.00 0.94 C ATOM 157 CG GLU 10 6.625 -4.593 5.461 1.00 0.94 C ATOM 158 CD GLU 10 7.102 -3.896 6.731 1.00 0.94 C ATOM 159 OE1 GLU 10 8.114 -3.243 6.683 1.00 0.94 O ATOM 160 OE2 GLU 10 6.445 -4.019 7.751 1.00 0.94 O ATOM 167 N MET 11 4.980 -1.494 2.310 1.00 0.66 N ATOM 168 CA MET 11 5.072 -0.433 1.329 1.00 0.66 C ATOM 169 C MET 11 4.389 0.843 1.825 1.00 0.66 C ATOM 170 O MET 11 4.907 1.937 1.615 1.00 0.66 O ATOM 171 CB MET 11 4.481 -0.883 0.005 1.00 0.66 C ATOM 172 CG MET 11 5.292 -1.924 -0.721 1.00 0.66 C ATOM 173 SD MET 11 6.975 -1.377 -0.996 1.00 0.66 S ATOM 174 CE MET 11 6.716 0.020 -2.072 1.00 0.66 C ATOM 184 N LYS 12 3.289 0.716 2.584 1.00 0.63 N ATOM 185 CA LYS 12 2.605 1.895 3.130 1.00 0.63 C ATOM 186 C LYS 12 3.553 2.739 3.952 1.00 0.63 C ATOM 187 O LYS 12 3.581 3.966 3.836 1.00 0.63 O ATOM 188 CB LYS 12 1.446 1.523 4.055 1.00 0.63 C ATOM 189 CG LYS 12 0.719 2.761 4.621 1.00 0.63 C ATOM 190 CD LYS 12 -0.397 2.403 5.595 1.00 0.63 C ATOM 191 CE LYS 12 -1.190 3.654 6.001 1.00 0.63 C ATOM 192 NZ LYS 12 -0.364 4.611 6.799 1.00 0.63 N ATOM 206 N LYS 13 4.376 2.062 4.749 1.00 0.99 N ATOM 207 CA LYS 13 5.331 2.700 5.647 1.00 0.99 C ATOM 208 C LYS 13 6.343 3.603 4.930 1.00 0.99 C ATOM 209 O LYS 13 6.963 4.460 5.563 1.00 0.99 O ATOM 210 CB LYS 13 6.087 1.634 6.447 1.00 0.99 C ATOM 211 CG LYS 13 5.247 0.886 7.487 1.00 0.99 C ATOM 212 CD LYS 13 6.077 -0.201 8.180 1.00 0.99 C ATOM 213 CE LYS 13 5.274 -0.947 9.236 1.00 0.99 C ATOM 214 NZ LYS 13 6.054 -2.079 9.828 1.00 0.99 N ATOM 228 N LYS 14 6.534 3.409 3.622 1.00 0.03 N ATOM 229 CA LYS 14 7.490 4.204 2.869 1.00 0.03 C ATOM 230 C LYS 14 6.904 5.536 2.374 1.00 0.03 C ATOM 231 O LYS 14 7.644 6.389 1.876 1.00 0.03 O ATOM 232 CB LYS 14 7.995 3.404 1.666 1.00 0.03 C ATOM 233 CG LYS 14 8.788 2.159 2.026 1.00 0.03 C ATOM 234 CD LYS 14 9.277 1.434 0.784 1.00 0.03 C ATOM 235 CE LYS 14 10.071 0.184 1.152 1.00 0.03 C ATOM 236 NZ LYS 14 10.591 -0.528 -0.053 1.00 0.03 N ATOM 250 N PHE 15 5.580 5.711 2.483 1.00 0.49 N ATOM 251 CA PHE 15 4.938 6.919 1.971 1.00 0.49 C ATOM 252 C PHE 15 4.189 7.744 3.025 1.00 0.49 C ATOM 253 O PHE 15 2.994 7.560 3.272 1.00 0.49 O ATOM 254 CB PHE 15 4.013 6.531 0.832 1.00 0.49 C ATOM 255 CG PHE 15 4.747 5.984 -0.357 1.00 0.49 C ATOM 256 CD1 PHE 15 5.105 4.660 -0.420 1.00 0.49 C ATOM 257 CD2 PHE 15 5.080 6.805 -1.417 1.00 0.49 C ATOM 258 CE1 PHE 15 5.799 4.168 -1.502 1.00 0.49 C ATOM 259 CE2 PHE 15 5.764 6.310 -2.505 1.00 0.49 C ATOM 260 CZ PHE 15 6.127 4.992 -2.545 1.00 0.49 C ATOM 270 N LYS 16 4.900 8.721 3.588 1.00 0.37 N ATOM 271 CA LYS 16 4.408 9.571 4.677 1.00 0.37 C ATOM 272 C LYS 16 3.240 10.472 4.280 1.00 0.37 C ATOM 273 O LYS 16 2.472 10.919 5.131 1.00 0.37 O ATOM 274 CB LYS 16 5.546 10.439 5.213 1.00 0.37 C ATOM 275 CG LYS 16 6.630 9.669 5.962 1.00 0.37 C ATOM 276 CD LYS 16 7.733 10.602 6.453 1.00 0.37 C ATOM 277 CE LYS 16 8.817 9.841 7.206 1.00 0.37 C ATOM 278 NZ LYS 16 9.915 10.741 7.657 1.00 0.37 N ATOM 292 N ASN 17 3.133 10.759 2.987 1.00 0.44 N ATOM 293 CA ASN 17 2.103 11.639 2.458 1.00 0.44 C ATOM 294 C ASN 17 0.934 10.871 1.850 1.00 0.44 C ATOM 295 O ASN 17 0.131 11.456 1.108 1.00 0.44 O ATOM 296 CB ASN 17 2.692 12.568 1.415 1.00 0.44 C ATOM 297 CG ASN 17 3.673 13.555 1.990 1.00 0.44 C ATOM 298 OD1 ASN 17 3.484 14.079 3.094 1.00 0.44 O ATOM 299 ND2 ASN 17 4.721 13.826 1.253 1.00 0.44 N ATOM 306 N CYS 18 0.849 9.553 2.106 1.00 0.87 N ATOM 307 CA CYS 18 -0.216 8.783 1.475 1.00 0.87 C ATOM 308 C CYS 18 -1.197 7.996 2.342 1.00 0.87 C ATOM 309 O CYS 18 -0.867 7.485 3.418 1.00 0.87 O ATOM 310 CB CYS 18 0.397 7.774 0.542 1.00 0.87 C ATOM 311 SG CYS 18 1.385 8.489 -0.753 1.00 0.87 S ATOM 317 N GLU 19 -2.397 7.819 1.786 1.00 0.77 N ATOM 318 CA GLU 19 -3.415 6.918 2.317 1.00 0.77 C ATOM 319 C GLU 19 -3.400 5.703 1.401 1.00 0.77 C ATOM 320 O GLU 19 -3.200 5.857 0.193 1.00 0.77 O ATOM 321 CB GLU 19 -4.801 7.556 2.293 1.00 0.77 C ATOM 322 CG GLU 19 -4.977 8.787 3.135 1.00 0.77 C ATOM 323 CD GLU 19 -6.383 9.354 3.030 1.00 0.77 C ATOM 324 OE1 GLU 19 -7.193 8.805 2.290 1.00 0.77 O ATOM 325 OE2 GLU 19 -6.649 10.336 3.683 1.00 0.77 O ATOM 332 N VAL 20 -3.609 4.503 1.926 1.00 0.19 N ATOM 333 CA VAL 20 -3.550 3.356 1.023 1.00 0.19 C ATOM 334 C VAL 20 -4.714 2.386 1.147 1.00 0.19 C ATOM 335 O VAL 20 -5.373 2.308 2.187 1.00 0.19 O ATOM 336 CB VAL 20 -2.278 2.548 1.286 1.00 0.19 C ATOM 337 CG1 VAL 20 -1.026 3.413 1.107 1.00 0.19 C ATOM 338 CG2 VAL 20 -2.357 1.946 2.628 1.00 0.19 C ATOM 348 N ARG 21 -4.886 1.581 0.099 1.00 0.15 N ATOM 349 CA ARG 21 -5.820 0.461 0.088 1.00 0.15 C ATOM 350 C ARG 21 -5.111 -0.785 -0.430 1.00 0.15 C ATOM 351 O ARG 21 -4.545 -0.770 -1.524 1.00 0.15 O ATOM 352 CB ARG 21 -6.995 0.750 -0.834 1.00 0.15 C ATOM 353 CG ARG 21 -8.057 -0.346 -0.920 1.00 0.15 C ATOM 354 CD ARG 21 -9.206 0.071 -1.790 1.00 0.15 C ATOM 355 NE ARG 21 -8.816 0.181 -3.215 1.00 0.15 N ATOM 356 CZ ARG 21 -8.877 -0.821 -4.113 1.00 0.15 C ATOM 357 NH1 ARG 21 -9.315 -2.018 -3.780 1.00 0.15 N ATOM 358 NH2 ARG 21 -8.494 -0.568 -5.340 1.00 0.15 N ATOM 372 N CYS 22 -5.163 -1.889 0.313 1.00 0.49 N ATOM 373 CA CYS 22 -4.490 -3.080 -0.205 1.00 0.49 C ATOM 374 C CYS 22 -5.434 -3.916 -1.032 1.00 0.49 C ATOM 375 O CYS 22 -6.354 -4.566 -0.521 1.00 0.49 O ATOM 376 CB CYS 22 -3.928 -3.953 0.914 1.00 0.49 C ATOM 377 SG CYS 22 -3.037 -5.492 0.335 1.00 0.49 S ATOM 382 N ASP 23 -5.209 -3.909 -2.329 1.00 0.88 N ATOM 383 CA ASP 23 -6.067 -4.629 -3.229 1.00 0.88 C ATOM 384 C ASP 23 -5.537 -6.030 -3.345 1.00 0.88 C ATOM 385 O ASP 23 -4.867 -6.397 -4.321 1.00 0.88 O ATOM 386 CB ASP 23 -6.142 -3.968 -4.603 1.00 0.88 C ATOM 387 CG ASP 23 -7.142 -4.661 -5.493 1.00 0.88 C ATOM 388 OD1 ASP 23 -7.562 -5.753 -5.135 1.00 0.88 O ATOM 389 OD2 ASP 23 -7.466 -4.138 -6.532 1.00 0.88 O ATOM 394 N GLU 24 -5.916 -6.841 -2.378 1.00 0.51 N ATOM 395 CA GLU 24 -5.455 -8.211 -2.329 1.00 0.51 C ATOM 396 C GLU 24 -5.773 -8.957 -3.631 1.00 0.51 C ATOM 397 O GLU 24 -4.952 -9.739 -4.113 1.00 0.51 O ATOM 398 CB GLU 24 -6.085 -8.928 -1.137 1.00 0.51 C ATOM 399 CG GLU 24 -5.627 -10.366 -0.925 1.00 0.51 C ATOM 400 CD GLU 24 -6.268 -11.045 0.297 1.00 0.51 C ATOM 401 OE1 GLU 24 -7.064 -10.436 0.992 1.00 0.51 O ATOM 402 OE2 GLU 24 -5.932 -12.184 0.545 1.00 0.51 O ATOM 409 N SER 25 -6.948 -8.691 -4.223 1.00 0.81 N ATOM 410 CA SER 25 -7.383 -9.412 -5.422 1.00 0.81 C ATOM 411 C SER 25 -6.516 -9.140 -6.657 1.00 0.81 C ATOM 412 O SER 25 -6.532 -9.931 -7.604 1.00 0.81 O ATOM 413 CB SER 25 -8.843 -9.103 -5.744 1.00 0.81 C ATOM 414 OG SER 25 -9.041 -7.796 -6.246 1.00 0.81 O ATOM 420 N ASN 26 -5.764 -8.035 -6.656 1.00 0.56 N ATOM 421 CA ASN 26 -4.867 -7.721 -7.762 1.00 0.56 C ATOM 422 C ASN 26 -3.419 -7.693 -7.295 1.00 0.56 C ATOM 423 O ASN 26 -2.552 -7.149 -7.982 1.00 0.56 O ATOM 424 CB ASN 26 -5.241 -6.416 -8.452 1.00 0.56 C ATOM 425 CG ASN 26 -6.512 -6.512 -9.281 1.00 0.56 C ATOM 426 OD1 ASN 26 -6.497 -7.153 -10.343 1.00 0.56 O ATOM 427 ND2 ASN 26 -7.581 -5.886 -8.856 1.00 0.56 N ATOM 434 N HIS 27 -3.162 -8.256 -6.112 1.00 0.86 N ATOM 435 CA HIS 27 -1.830 -8.297 -5.520 1.00 0.86 C ATOM 436 C HIS 27 -1.131 -6.943 -5.487 1.00 0.86 C ATOM 437 O HIS 27 0.063 -6.857 -5.773 1.00 0.86 O ATOM 438 CB HIS 27 -0.952 -9.315 -6.234 1.00 0.86 C ATOM 439 CG HIS 27 -1.491 -10.691 -6.125 1.00 0.86 C ATOM 440 ND1 HIS 27 -1.518 -11.384 -4.931 1.00 0.86 N ATOM 441 CD2 HIS 27 -2.030 -11.514 -7.054 1.00 0.86 C ATOM 442 CE1 HIS 27 -2.047 -12.576 -5.133 1.00 0.86 C ATOM 443 NE2 HIS 27 -2.362 -12.684 -6.414 1.00 0.86 N ATOM 451 N CYS 28 -1.852 -5.881 -5.127 1.00 0.24 N ATOM 452 CA CYS 28 -1.227 -4.556 -5.123 1.00 0.24 C ATOM 453 C CYS 28 -1.882 -3.546 -4.202 1.00 0.24 C ATOM 454 O CYS 28 -2.943 -3.810 -3.653 1.00 0.24 O ATOM 455 CB CYS 28 -1.222 -3.995 -6.540 1.00 0.24 C ATOM 456 SG CYS 28 -2.877 -3.721 -7.209 1.00 0.24 S ATOM 462 N VAL 29 -1.244 -2.382 -4.059 1.00 0.23 N ATOM 463 CA VAL 29 -1.759 -1.293 -3.239 1.00 0.23 C ATOM 464 C VAL 29 -2.121 -0.061 -4.037 1.00 0.23 C ATOM 465 O VAL 29 -1.293 0.448 -4.795 1.00 0.23 O ATOM 466 CB VAL 29 -0.687 -0.813 -2.258 1.00 0.23 C ATOM 467 CG1 VAL 29 -1.196 0.309 -1.429 1.00 0.23 C ATOM 468 CG2 VAL 29 -0.265 -1.875 -1.416 1.00 0.23 C ATOM 478 N GLU 30 -3.332 0.454 -3.827 1.00 0.49 N ATOM 479 CA GLU 30 -3.734 1.710 -4.446 1.00 0.49 C ATOM 480 C GLU 30 -3.321 2.808 -3.481 1.00 0.49 C ATOM 481 O GLU 30 -3.691 2.762 -2.301 1.00 0.49 O ATOM 482 CB GLU 30 -5.244 1.785 -4.700 1.00 0.49 C ATOM 483 CG GLU 30 -5.673 3.075 -5.406 1.00 0.49 C ATOM 484 CD GLU 30 -7.165 3.221 -5.645 1.00 0.49 C ATOM 485 OE1 GLU 30 -7.933 2.341 -5.294 1.00 0.49 O ATOM 486 OE2 GLU 30 -7.534 4.233 -6.211 1.00 0.49 O ATOM 493 N VAL 31 -2.535 3.774 -3.946 1.00 0.66 N ATOM 494 CA VAL 31 -2.040 4.805 -3.048 1.00 0.66 C ATOM 495 C VAL 31 -2.490 6.210 -3.414 1.00 0.66 C ATOM 496 O VAL 31 -2.228 6.691 -4.522 1.00 0.66 O ATOM 497 CB VAL 31 -0.539 4.795 -3.118 1.00 0.66 C ATOM 498 CG1 VAL 31 0.020 5.770 -2.229 1.00 0.66 C ATOM 499 CG2 VAL 31 -0.036 3.483 -2.845 1.00 0.66 C ATOM 509 N ARG 32 -3.089 6.900 -2.450 1.00 0.48 N ATOM 510 CA ARG 32 -3.563 8.267 -2.617 1.00 0.48 C ATOM 511 C ARG 32 -2.614 9.253 -1.950 1.00 0.48 C ATOM 512 O ARG 32 -2.566 9.342 -0.720 1.00 0.48 O ATOM 513 CB ARG 32 -4.941 8.431 -1.999 1.00 0.48 C ATOM 514 CG ARG 32 -6.038 7.584 -2.610 1.00 0.48 C ATOM 515 CD ARG 32 -7.362 7.835 -1.948 1.00 0.48 C ATOM 516 NE ARG 32 -7.390 7.398 -0.542 1.00 0.48 N ATOM 517 CZ ARG 32 -7.626 6.145 -0.130 1.00 0.48 C ATOM 518 NH1 ARG 32 -7.850 5.170 -0.990 1.00 0.48 N ATOM 519 NH2 ARG 32 -7.632 5.923 1.160 1.00 0.48 N ATOM 533 N CYS 33 -1.799 9.941 -2.740 1.00 0.80 N ATOM 534 CA CYS 33 -0.813 10.855 -2.186 1.00 0.80 C ATOM 535 C CYS 33 -1.389 12.243 -2.167 1.00 0.80 C ATOM 536 O CYS 33 -2.099 12.625 -3.095 1.00 0.80 O ATOM 537 CB CYS 33 0.468 10.893 -2.986 1.00 0.80 C ATOM 538 SG CYS 33 1.758 11.923 -2.224 1.00 0.80 S ATOM 544 N SER 34 -0.978 13.057 -1.207 1.00 0.94 N ATOM 545 CA SER 34 -1.449 14.439 -1.155 1.00 0.94 C ATOM 546 C SER 34 -1.178 15.246 -2.452 1.00 0.94 C ATOM 547 O SER 34 -1.785 16.301 -2.654 1.00 0.94 O ATOM 548 CB SER 34 -0.817 15.137 0.034 1.00 0.94 C ATOM 549 OG SER 34 0.565 15.276 -0.136 1.00 0.94 O ATOM 555 N ASP 35 -0.276 14.770 -3.321 1.00 0.16 N ATOM 556 CA ASP 35 -0.003 15.440 -4.594 1.00 0.16 C ATOM 557 C ASP 35 0.156 14.497 -5.814 1.00 0.16 C ATOM 558 O ASP 35 0.649 14.933 -6.855 1.00 0.16 O ATOM 559 CB ASP 35 1.262 16.298 -4.456 1.00 0.16 C ATOM 560 CG ASP 35 2.526 15.472 -4.130 1.00 0.16 C ATOM 561 OD1 ASP 35 2.417 14.271 -4.029 1.00 0.16 O ATOM 562 OD2 ASP 35 3.571 16.058 -3.972 1.00 0.16 O ATOM 567 N THR 36 -0.203 13.210 -5.676 1.00 0.99 N ATOM 568 CA THR 36 -0.028 12.219 -6.765 1.00 0.99 C ATOM 569 C THR 36 -0.758 10.873 -6.500 1.00 0.99 C ATOM 570 O THR 36 -1.602 10.757 -5.608 1.00 0.99 O ATOM 571 CB THR 36 1.485 11.991 -7.127 1.00 0.99 C ATOM 572 OG1 THR 36 1.584 11.200 -8.330 1.00 0.99 O ATOM 573 CG2 THR 36 2.232 11.313 -6.032 1.00 0.99 C ATOM 581 N LYS 37 -0.437 9.864 -7.307 1.00 0.30 N ATOM 582 CA LYS 37 -0.996 8.518 -7.157 1.00 0.30 C ATOM 583 C LYS 37 0.075 7.461 -7.445 1.00 0.30 C ATOM 584 O LYS 37 0.868 7.619 -8.378 1.00 0.30 O ATOM 585 CB LYS 37 -2.216 8.336 -8.072 1.00 0.30 C ATOM 586 CG LYS 37 -2.936 6.992 -7.918 1.00 0.30 C ATOM 587 CD LYS 37 -4.235 6.939 -8.717 1.00 0.30 C ATOM 588 CE LYS 37 -4.943 5.600 -8.516 1.00 0.30 C ATOM 589 NZ LYS 37 -6.235 5.533 -9.254 1.00 0.30 N ATOM 603 N TYR 38 0.113 6.405 -6.622 1.00 0.27 N ATOM 604 CA TYR 38 1.102 5.326 -6.800 1.00 0.27 C ATOM 605 C TYR 38 0.452 3.938 -6.770 1.00 0.27 C ATOM 606 O TYR 38 -0.641 3.754 -6.218 1.00 0.27 O ATOM 607 CB TYR 38 2.185 5.307 -5.690 1.00 0.27 C ATOM 608 CG TYR 38 2.989 6.557 -5.438 1.00 0.27 C ATOM 609 CD1 TYR 38 2.557 7.477 -4.490 1.00 0.27 C ATOM 610 CD2 TYR 38 4.170 6.775 -6.117 1.00 0.27 C ATOM 611 CE1 TYR 38 3.309 8.595 -4.222 1.00 0.27 C ATOM 612 CE2 TYR 38 4.916 7.906 -5.856 1.00 0.27 C ATOM 613 CZ TYR 38 4.488 8.810 -4.909 1.00 0.27 C ATOM 614 OH TYR 38 5.235 9.932 -4.640 1.00 0.27 O ATOM 624 N THR 39 1.153 2.955 -7.339 1.00 0.10 N ATOM 625 CA THR 39 0.767 1.557 -7.168 1.00 0.10 C ATOM 626 C THR 39 1.951 0.826 -6.543 1.00 0.10 C ATOM 627 O THR 39 3.056 0.862 -7.087 1.00 0.10 O ATOM 628 CB THR 39 0.350 0.882 -8.481 1.00 0.10 C ATOM 629 OG1 THR 39 -0.763 1.589 -9.043 1.00 0.10 O ATOM 630 CG2 THR 39 -0.065 -0.573 -8.194 1.00 0.10 C ATOM 638 N LEU 40 1.734 0.205 -5.388 1.00 0.25 N ATOM 639 CA LEU 40 2.843 -0.435 -4.665 1.00 0.25 C ATOM 640 C LEU 40 2.620 -1.932 -4.476 1.00 0.25 C ATOM 641 O LEU 40 1.478 -2.386 -4.540 1.00 0.25 O ATOM 642 CB LEU 40 2.998 0.218 -3.296 1.00 0.25 C ATOM 643 CG LEU 40 3.054 1.726 -3.315 1.00 0.25 C ATOM 644 CD1 LEU 40 3.035 2.241 -1.876 1.00 0.25 C ATOM 645 CD2 LEU 40 4.266 2.234 -4.049 1.00 0.25 C ATOM 657 N CYS 41 3.717 -2.670 -4.215 1.00 0.39 N ATOM 658 CA CYS 41 3.752 -4.110 -3.857 1.00 0.39 C ATOM 659 C CYS 41 4.657 -4.867 -4.829 1.00 0.39 C ATOM 660 O CYS 41 4.541 -6.089 -4.964 1.00 0.39 O ATOM 661 OXT CYS 41 5.739 -4.353 -5.099 1.00 0.39 O ATOM 662 CB CYS 41 2.364 -4.769 -3.834 1.00 0.39 C ATOM 663 SG CYS 41 2.306 -6.497 -3.295 1.00 0.39 S TER END