####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS344_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.20 1.20 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.20 1.20 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 3 - 41 0.99 1.22 LCS_AVERAGE: 92.62 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 10 19 24 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 33 41 41 9 26 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 39 41 41 14 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 39 41 41 19 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 39 41 41 12 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 39 41 41 4 5 5 32 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 39 41 41 3 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 39 41 41 18 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 39 41 41 18 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 39 41 41 9 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 39 41 41 9 28 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 39 41 41 5 25 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 39 41 41 9 14 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 39 41 41 5 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 39 41 41 9 14 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 39 41 41 4 18 35 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 39 41 41 15 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 39 41 41 9 25 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 39 41 41 5 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 39 41 41 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 39 41 41 15 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 97.54 ( 92.62 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 21 30 36 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 51.22 73.17 87.80 95.12 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.52 0.71 0.87 0.87 1.01 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 GDT RMS_ALL_AT 1.22 1.22 1.22 1.23 1.23 1.21 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 1.20 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.055 0 0.654 0.779 7.320 6.818 4.545 7.320 LGA Q 2 Q 2 1.508 0 0.193 0.960 2.371 62.273 54.747 1.678 LGA E 3 E 3 0.886 0 0.083 1.521 6.350 77.727 46.263 5.684 LGA T 4 T 4 0.586 0 0.019 1.097 2.636 90.909 74.805 2.636 LGA R 5 R 5 0.407 0 0.043 1.006 3.556 100.000 71.240 3.556 LGA K 6 K 6 0.292 0 0.052 0.694 3.352 100.000 71.717 3.126 LGA K 7 K 7 0.339 0 0.091 0.673 2.450 100.000 72.525 2.172 LGA C 8 C 8 0.357 0 0.065 0.167 1.036 100.000 91.212 1.036 LGA T 9 T 9 0.445 0 0.018 0.104 0.720 100.000 97.403 0.431 LGA E 10 E 10 0.443 0 0.031 0.517 1.417 100.000 86.263 1.417 LGA M 11 M 11 0.208 0 0.079 0.117 0.326 100.000 100.000 0.256 LGA K 12 K 12 0.242 0 0.024 0.653 2.315 100.000 86.263 2.309 LGA K 13 K 13 0.363 0 0.052 0.578 1.645 95.455 84.646 0.838 LGA K 14 K 14 0.568 0 0.108 0.994 5.589 86.364 58.586 5.589 LGA F 15 F 15 1.210 0 0.393 0.418 2.110 55.000 60.992 1.796 LGA K 16 K 16 3.197 0 0.650 1.074 5.011 15.909 14.141 4.866 LGA N 17 N 17 0.751 0 0.347 0.599 2.695 77.727 63.182 1.633 LGA C 18 C 18 0.706 0 0.085 0.141 0.885 81.818 81.818 0.885 LGA E 19 E 19 0.691 0 0.261 0.529 1.305 77.727 74.545 1.021 LGA V 20 V 20 1.083 0 0.089 0.101 1.480 65.455 67.792 0.929 LGA R 21 R 21 1.212 0 0.048 1.187 4.693 77.727 48.595 4.477 LGA C 22 C 22 1.555 0 0.095 0.149 1.658 58.182 55.758 1.543 LGA D 23 D 23 1.947 0 0.371 1.142 4.419 37.727 32.727 2.890 LGA E 24 E 24 0.446 0 0.028 0.587 3.780 95.455 58.990 3.780 LGA S 25 S 25 0.314 0 0.094 0.685 2.434 100.000 89.697 2.434 LGA N 26 N 26 0.641 0 0.182 1.186 5.297 90.909 60.227 5.297 LGA H 27 H 27 0.569 0 0.070 0.254 0.806 81.818 85.455 0.237 LGA C 28 C 28 0.465 0 0.141 0.197 1.539 83.182 88.788 0.325 LGA V 29 V 29 0.387 0 0.095 0.116 0.809 95.455 89.610 0.647 LGA E 30 E 30 0.233 0 0.149 0.674 2.644 95.455 82.020 2.644 LGA V 31 V 31 0.232 0 0.017 0.066 0.384 100.000 100.000 0.175 LGA R 32 R 32 0.468 0 0.098 1.162 7.416 86.818 51.074 7.416 LGA C 33 C 33 0.846 0 0.539 0.592 3.189 61.818 63.030 1.261 LGA S 34 S 34 1.738 0 0.214 0.584 2.647 45.000 54.545 0.964 LGA D 35 D 35 2.307 0 0.153 1.053 5.656 36.364 23.182 5.526 LGA T 36 T 36 1.153 0 0.079 0.174 1.588 78.182 70.649 1.588 LGA K 37 K 37 0.089 0 0.051 1.456 3.633 78.636 59.394 3.633 LGA Y 38 Y 38 1.202 0 0.016 1.400 5.282 82.273 49.394 5.282 LGA T 39 T 39 1.048 0 0.110 0.112 2.079 61.818 55.325 1.646 LGA L 40 L 40 0.335 0 0.029 0.987 3.398 100.000 77.500 3.398 LGA C 41 C 41 0.802 0 0.386 1.154 4.407 70.000 50.130 4.407 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.197 1.339 2.019 78.293 66.068 42.794 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.20 92.073 96.160 3.160 LGA_LOCAL RMSD: 1.197 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.197 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.197 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.831024 * X + -0.238304 * Y + -0.502603 * Z + -4.053401 Y_new = 0.458961 * X + 0.804251 * Y + 0.377538 * Z + -76.069206 Z_new = 0.314250 * X + -0.544418 * Y + 0.777724 * Z + -26.006952 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.504595 -0.319667 -0.610736 [DEG: 28.9112 -18.3156 -34.9926 ] ZXZ: -2.215042 0.679759 2.618090 [DEG: -126.9126 38.9473 150.0055 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS344_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.20 96.160 1.20 REMARK ---------------------------------------------------------- MOLECULE T0955TS344_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 -3.200 -13.948 0.351 1.00 1.00 N ATOM 2 CA SER 1 -3.104 -12.489 0.227 1.00 1.00 C ATOM 3 C SER 1 -2.150 -11.835 1.229 1.00 1.00 C ATOM 4 O SER 1 -1.841 -10.643 1.134 1.00 1.00 O ATOM 5 CB SER 1 -4.483 -11.880 0.387 1.00 1.00 C ATOM 6 OG SER 1 -4.957 -12.047 1.695 1.00 1.00 O ATOM 14 N GLN 2 -1.627 -12.623 2.171 1.00 0.66 N ATOM 15 CA GLN 2 -0.697 -12.162 3.203 1.00 0.66 C ATOM 16 C GLN 2 0.546 -11.429 2.667 1.00 0.66 C ATOM 17 O GLN 2 1.054 -10.537 3.342 1.00 0.66 O ATOM 18 CB GLN 2 -0.252 -13.354 4.054 1.00 0.66 C ATOM 19 CG GLN 2 0.626 -12.982 5.237 1.00 0.66 C ATOM 20 CD GLN 2 -0.106 -12.127 6.254 1.00 0.66 C ATOM 21 OE1 GLN 2 -1.225 -12.448 6.664 1.00 0.66 O ATOM 22 NE2 GLN 2 0.521 -11.033 6.669 1.00 0.66 N ATOM 31 N GLU 3 1.032 -11.756 1.466 1.00 0.55 N ATOM 32 CA GLU 3 2.158 -11.037 0.854 1.00 0.55 C ATOM 33 C GLU 3 1.776 -9.630 0.378 1.00 0.55 C ATOM 34 O GLU 3 2.494 -8.671 0.662 1.00 0.55 O ATOM 35 CB GLU 3 2.712 -11.841 -0.324 1.00 0.55 C ATOM 36 CG GLU 3 3.895 -11.191 -1.028 1.00 0.55 C ATOM 37 CD GLU 3 5.098 -11.048 -0.137 1.00 0.55 C ATOM 38 OE1 GLU 3 5.170 -11.741 0.849 1.00 0.55 O ATOM 39 OE2 GLU 3 5.947 -10.244 -0.443 1.00 0.55 O ATOM 46 N THR 4 0.589 -9.481 -0.216 1.00 0.41 N ATOM 47 CA THR 4 -0.031 -8.190 -0.557 1.00 0.41 C ATOM 48 C THR 4 -0.248 -7.329 0.685 1.00 0.41 C ATOM 49 O THR 4 0.107 -6.153 0.681 1.00 0.41 O ATOM 50 CB THR 4 -1.375 -8.392 -1.281 1.00 0.41 C ATOM 51 OG1 THR 4 -1.162 -9.118 -2.498 1.00 0.41 O ATOM 52 CG2 THR 4 -2.016 -7.050 -1.600 1.00 0.41 C ATOM 60 N ARG 5 -0.755 -7.908 1.783 1.00 0.32 N ATOM 61 CA ARG 5 -0.910 -7.210 3.081 1.00 0.32 C ATOM 62 C ARG 5 0.426 -6.736 3.665 1.00 0.32 C ATOM 63 O ARG 5 0.541 -5.603 4.136 1.00 0.32 O ATOM 64 CB ARG 5 -1.580 -8.150 4.100 1.00 0.32 C ATOM 65 CG ARG 5 -3.056 -8.424 3.794 1.00 0.32 C ATOM 66 CD ARG 5 -3.675 -9.385 4.818 1.00 0.32 C ATOM 67 NE ARG 5 -5.082 -9.628 4.495 1.00 0.32 N ATOM 68 CZ ARG 5 -5.924 -10.487 5.022 1.00 0.32 C ATOM 69 NH1 ARG 5 -7.117 -10.582 4.518 1.00 0.32 N ATOM 70 NH2 ARG 5 -5.617 -11.257 6.032 1.00 0.32 N ATOM 84 N LYS 6 1.451 -7.591 3.615 1.00 0.23 N ATOM 85 CA LYS 6 2.811 -7.269 4.065 1.00 0.23 C ATOM 86 C LYS 6 3.401 -6.105 3.276 1.00 0.23 C ATOM 87 O LYS 6 3.806 -5.121 3.894 1.00 0.23 O ATOM 88 CB LYS 6 3.719 -8.493 3.944 1.00 0.23 C ATOM 89 CG LYS 6 5.153 -8.261 4.404 1.00 0.23 C ATOM 90 CD LYS 6 5.981 -9.532 4.293 1.00 0.23 C ATOM 91 CE LYS 6 7.424 -9.292 4.715 1.00 0.23 C ATOM 92 NZ LYS 6 8.247 -10.526 4.609 1.00 0.23 N ATOM 106 N LYS 7 3.343 -6.151 1.938 1.00 0.28 N ATOM 107 CA LYS 7 3.708 -5.039 1.043 1.00 0.28 C ATOM 108 C LYS 7 2.974 -3.748 1.408 1.00 0.28 C ATOM 109 O LYS 7 3.603 -2.714 1.572 1.00 0.28 O ATOM 110 CB LYS 7 3.414 -5.407 -0.413 1.00 0.28 C ATOM 111 CG LYS 7 4.350 -6.457 -0.997 1.00 0.28 C ATOM 112 CD LYS 7 3.976 -6.792 -2.433 1.00 0.28 C ATOM 113 CE LYS 7 4.895 -7.857 -3.012 1.00 0.28 C ATOM 114 NZ LYS 7 4.507 -8.235 -4.397 1.00 0.28 N ATOM 128 N CYS 8 1.660 -3.807 1.594 1.00 0.27 N ATOM 129 CA CYS 8 0.815 -2.678 1.998 1.00 0.27 C ATOM 130 C CYS 8 1.269 -2.048 3.325 1.00 0.27 C ATOM 131 O CYS 8 1.230 -0.827 3.481 1.00 0.27 O ATOM 132 CB CYS 8 -0.619 -3.240 2.087 1.00 0.27 C ATOM 133 SG CYS 8 -1.983 -2.071 1.927 1.00 0.27 S ATOM 138 N THR 9 1.748 -2.871 4.262 1.00 0.40 N ATOM 139 CA THR 9 2.361 -2.427 5.522 1.00 0.40 C ATOM 140 C THR 9 3.708 -1.727 5.312 1.00 0.40 C ATOM 141 O THR 9 3.943 -0.660 5.887 1.00 0.40 O ATOM 142 CB THR 9 2.553 -3.616 6.482 1.00 0.40 C ATOM 143 OG1 THR 9 1.279 -4.200 6.784 1.00 0.40 O ATOM 144 CG2 THR 9 3.214 -3.157 7.773 1.00 0.40 C ATOM 152 N GLU 10 4.575 -2.275 4.448 1.00 0.46 N ATOM 153 CA GLU 10 5.815 -1.597 4.049 1.00 0.46 C ATOM 154 C GLU 10 5.513 -0.205 3.503 1.00 0.46 C ATOM 155 O GLU 10 6.159 0.753 3.908 1.00 0.46 O ATOM 156 CB GLU 10 6.566 -2.416 2.996 1.00 0.46 C ATOM 157 CG GLU 10 7.902 -1.824 2.573 1.00 0.46 C ATOM 158 CD GLU 10 8.609 -2.655 1.540 1.00 0.46 C ATOM 159 OE1 GLU 10 8.107 -3.699 1.198 1.00 0.46 O ATOM 160 OE2 GLU 10 9.653 -2.246 1.090 1.00 0.46 O ATOM 167 N MET 11 4.534 -0.076 2.603 1.00 0.44 N ATOM 168 CA MET 11 4.221 1.196 1.956 1.00 0.44 C ATOM 169 C MET 11 3.612 2.190 2.946 1.00 0.44 C ATOM 170 O MET 11 3.998 3.357 2.933 1.00 0.44 O ATOM 171 CB MET 11 3.274 0.967 0.780 1.00 0.44 C ATOM 172 CG MET 11 3.902 0.242 -0.403 1.00 0.44 C ATOM 173 SD MET 11 5.308 1.133 -1.098 1.00 0.44 S ATOM 174 CE MET 11 6.667 0.337 -0.247 1.00 0.44 C ATOM 184 N LYS 12 2.764 1.734 3.881 1.00 0.46 N ATOM 185 CA LYS 12 2.279 2.558 5.006 1.00 0.46 C ATOM 186 C LYS 12 3.407 3.119 5.883 1.00 0.46 C ATOM 187 O LYS 12 3.301 4.239 6.395 1.00 0.46 O ATOM 188 CB LYS 12 1.317 1.744 5.872 1.00 0.46 C ATOM 189 CG LYS 12 -0.046 1.498 5.239 1.00 0.46 C ATOM 190 CD LYS 12 -0.921 0.632 6.131 1.00 0.46 C ATOM 191 CE LYS 12 -2.272 0.359 5.485 1.00 0.46 C ATOM 192 NZ LYS 12 -3.137 -0.496 6.344 1.00 0.46 N ATOM 206 N LYS 13 4.487 2.352 6.080 1.00 0.57 N ATOM 207 CA LYS 13 5.667 2.825 6.825 1.00 0.57 C ATOM 208 C LYS 13 6.536 3.797 6.011 1.00 0.57 C ATOM 209 O LYS 13 6.787 4.901 6.492 1.00 0.57 O ATOM 210 CB LYS 13 6.514 1.635 7.279 1.00 0.57 C ATOM 211 CG LYS 13 5.872 0.786 8.368 1.00 0.57 C ATOM 212 CD LYS 13 6.761 -0.390 8.748 1.00 0.57 C ATOM 213 CE LYS 13 6.124 -1.237 9.839 1.00 0.57 C ATOM 214 NZ LYS 13 6.973 -2.402 10.206 1.00 0.57 N ATOM 228 N LYS 14 6.930 3.418 4.790 1.00 0.81 N ATOM 229 CA LYS 14 7.807 4.157 3.859 1.00 0.81 C ATOM 230 C LYS 14 7.241 5.512 3.453 1.00 0.81 C ATOM 231 O LYS 14 7.890 6.531 3.627 1.00 0.81 O ATOM 232 CB LYS 14 8.070 3.322 2.605 1.00 0.81 C ATOM 233 CG LYS 14 8.959 4.001 1.571 1.00 0.81 C ATOM 234 CD LYS 14 9.211 3.094 0.377 1.00 0.81 C ATOM 235 CE LYS 14 10.076 3.781 -0.669 1.00 0.81 C ATOM 236 NZ LYS 14 10.373 2.887 -1.821 1.00 0.81 N ATOM 250 N PHE 15 6.025 5.515 2.915 1.00 0.79 N ATOM 251 CA PHE 15 5.369 6.715 2.428 1.00 0.79 C ATOM 252 C PHE 15 4.600 7.382 3.561 1.00 0.79 C ATOM 253 O PHE 15 3.893 6.714 4.319 1.00 0.79 O ATOM 254 CB PHE 15 4.422 6.384 1.274 1.00 0.79 C ATOM 255 CG PHE 15 5.124 6.061 -0.014 1.00 0.79 C ATOM 256 CD1 PHE 15 5.449 4.751 -0.334 1.00 0.79 C ATOM 257 CD2 PHE 15 5.464 7.066 -0.907 1.00 0.79 C ATOM 258 CE1 PHE 15 6.097 4.453 -1.518 1.00 0.79 C ATOM 259 CE2 PHE 15 6.109 6.770 -2.091 1.00 0.79 C ATOM 260 CZ PHE 15 6.426 5.462 -2.397 1.00 0.79 C ATOM 270 N LYS 16 4.754 8.696 3.743 1.00 1.56 N ATOM 271 CA LYS 16 4.253 9.415 4.922 1.00 1.56 C ATOM 272 C LYS 16 3.256 10.483 4.482 1.00 1.56 C ATOM 273 O LYS 16 3.563 11.296 3.622 1.00 1.56 O ATOM 274 CB LYS 16 5.400 10.049 5.710 1.00 1.56 C ATOM 275 CG LYS 16 4.965 10.799 6.962 1.00 1.56 C ATOM 276 CD LYS 16 6.162 11.360 7.715 1.00 1.56 C ATOM 277 CE LYS 16 5.727 12.123 8.957 1.00 1.56 C ATOM 278 NZ LYS 16 6.889 12.669 9.710 1.00 1.56 N ATOM 292 N ASN 17 2.058 10.412 5.068 1.00 1.55 N ATOM 293 CA ASN 17 0.875 11.218 4.749 1.00 1.55 C ATOM 294 C ASN 17 0.190 10.764 3.449 1.00 1.55 C ATOM 295 O ASN 17 -0.216 11.574 2.618 1.00 1.55 O ATOM 296 CB ASN 17 1.249 12.686 4.665 1.00 1.55 C ATOM 297 CG ASN 17 1.832 13.208 5.948 1.00 1.55 C ATOM 298 OD1 ASN 17 1.387 12.842 7.042 1.00 1.55 O ATOM 299 ND2 ASN 17 2.821 14.058 5.838 1.00 1.55 N ATOM 306 N CYS 18 0.075 9.439 3.293 1.00 0.79 N ATOM 307 CA CYS 18 -0.467 8.789 2.113 1.00 0.79 C ATOM 308 C CYS 18 -1.485 7.714 2.493 1.00 0.79 C ATOM 309 O CYS 18 -1.255 6.916 3.404 1.00 0.79 O ATOM 310 CB CYS 18 0.687 8.184 1.302 1.00 0.79 C ATOM 311 SG CYS 18 2.076 9.302 0.975 1.00 0.79 S ATOM 316 N GLU 19 -2.604 7.690 1.784 1.00 0.45 N ATOM 317 CA GLU 19 -3.521 6.552 1.733 1.00 0.45 C ATOM 318 C GLU 19 -2.784 5.309 1.230 1.00 0.45 C ATOM 319 O GLU 19 -1.956 5.418 0.323 1.00 0.45 O ATOM 320 CB GLU 19 -4.716 6.859 0.828 1.00 0.45 C ATOM 321 CG GLU 19 -5.761 5.754 0.768 1.00 0.45 C ATOM 322 CD GLU 19 -6.946 6.114 -0.084 1.00 0.45 C ATOM 323 OE1 GLU 19 -6.947 7.183 -0.645 1.00 0.45 O ATOM 324 OE2 GLU 19 -7.851 5.319 -0.174 1.00 0.45 O ATOM 331 N VAL 20 -3.107 4.126 1.764 1.00 0.30 N ATOM 332 CA VAL 20 -2.600 2.857 1.223 1.00 0.30 C ATOM 333 C VAL 20 -3.668 1.771 1.257 1.00 0.30 C ATOM 334 O VAL 20 -3.903 1.119 2.280 1.00 0.30 O ATOM 335 CB VAL 20 -1.373 2.385 2.025 1.00 0.30 C ATOM 336 CG1 VAL 20 -0.804 1.108 1.424 1.00 0.30 C ATOM 337 CG2 VAL 20 -0.321 3.483 2.056 1.00 0.30 C ATOM 347 N ARG 21 -4.290 1.557 0.100 1.00 0.51 N ATOM 348 CA ARG 21 -5.237 0.477 -0.202 1.00 0.51 C ATOM 349 C ARG 21 -4.508 -0.835 -0.472 1.00 0.51 C ATOM 350 O ARG 21 -3.458 -0.848 -1.116 1.00 0.51 O ATOM 351 CB ARG 21 -6.093 0.832 -1.410 1.00 0.51 C ATOM 352 CG ARG 21 -6.947 2.079 -1.243 1.00 0.51 C ATOM 353 CD ARG 21 -7.627 2.451 -2.511 1.00 0.51 C ATOM 354 NE ARG 21 -8.326 3.722 -2.398 1.00 0.51 N ATOM 355 CZ ARG 21 -8.990 4.322 -3.405 1.00 0.51 C ATOM 356 NH1 ARG 21 -9.035 3.757 -4.591 1.00 0.51 N ATOM 357 NH2 ARG 21 -9.594 5.479 -3.200 1.00 0.51 N ATOM 371 N CYS 22 -5.110 -1.933 -0.026 1.00 0.52 N ATOM 372 CA CYS 22 -4.662 -3.286 -0.338 1.00 0.52 C ATOM 373 C CYS 22 -5.768 -3.962 -1.153 1.00 0.52 C ATOM 374 O CYS 22 -6.917 -4.013 -0.719 1.00 0.52 O ATOM 375 CB CYS 22 -4.299 -4.052 0.953 1.00 0.52 C ATOM 376 SG CYS 22 -3.640 -3.109 2.375 1.00 0.52 S ATOM 381 N ASP 23 -5.419 -4.442 -2.344 1.00 0.32 N ATOM 382 CA ASP 23 -6.331 -5.023 -3.323 1.00 0.32 C ATOM 383 C ASP 23 -5.999 -6.506 -3.502 1.00 0.32 C ATOM 384 O ASP 23 -5.223 -6.908 -4.368 1.00 0.32 O ATOM 385 CB ASP 23 -6.234 -4.292 -4.664 1.00 0.32 C ATOM 386 CG ASP 23 -7.237 -4.801 -5.691 1.00 0.32 C ATOM 387 OD1 ASP 23 -7.873 -5.794 -5.429 1.00 0.32 O ATOM 388 OD2 ASP 23 -7.358 -4.191 -6.726 1.00 0.32 O ATOM 393 N GLU 24 -6.541 -7.290 -2.572 1.00 0.46 N ATOM 394 CA GLU 24 -6.292 -8.725 -2.417 1.00 0.46 C ATOM 395 C GLU 24 -6.988 -9.574 -3.487 1.00 0.46 C ATOM 396 O GLU 24 -6.557 -10.677 -3.792 1.00 0.46 O ATOM 397 CB GLU 24 -6.700 -9.146 -1.000 1.00 0.46 C ATOM 398 CG GLU 24 -5.840 -8.400 0.040 1.00 0.46 C ATOM 399 CD GLU 24 -6.213 -8.720 1.485 1.00 0.46 C ATOM 400 OE1 GLU 24 -6.770 -9.806 1.775 1.00 0.46 O ATOM 401 OE2 GLU 24 -5.854 -7.926 2.375 1.00 0.46 O ATOM 408 N SER 25 -8.013 -9.004 -4.121 1.00 0.74 N ATOM 409 CA SER 25 -8.603 -9.476 -5.371 1.00 0.74 C ATOM 410 C SER 25 -7.638 -9.468 -6.563 1.00 0.74 C ATOM 411 O SER 25 -7.801 -10.277 -7.474 1.00 0.74 O ATOM 412 CB SER 25 -9.813 -8.626 -5.702 1.00 0.74 C ATOM 413 OG SER 25 -9.428 -7.346 -6.124 1.00 0.74 O ATOM 419 N ASN 26 -6.638 -8.580 -6.558 1.00 0.56 N ATOM 420 CA ASN 26 -5.721 -8.339 -7.673 1.00 0.56 C ATOM 421 C ASN 26 -4.240 -8.364 -7.232 1.00 0.56 C ATOM 422 O ASN 26 -3.373 -7.895 -7.963 1.00 0.56 O ATOM 423 CB ASN 26 -6.054 -7.021 -8.345 1.00 0.56 C ATOM 424 CG ASN 26 -7.373 -7.057 -9.068 1.00 0.56 C ATOM 425 OD1 ASN 26 -7.621 -7.949 -9.887 1.00 0.56 O ATOM 426 ND2 ASN 26 -8.223 -6.104 -8.780 1.00 0.56 N ATOM 433 N HIS 27 -3.952 -8.850 -6.019 1.00 0.45 N ATOM 434 CA HIS 27 -2.655 -8.803 -5.322 1.00 0.45 C ATOM 435 C HIS 27 -1.784 -7.575 -5.602 1.00 0.45 C ATOM 436 O HIS 27 -0.577 -7.646 -5.852 1.00 0.45 O ATOM 437 CB HIS 27 -1.932 -10.150 -5.470 1.00 0.45 C ATOM 438 CG HIS 27 -2.741 -11.250 -4.834 1.00 0.45 C ATOM 439 ND1 HIS 27 -2.984 -11.385 -3.458 1.00 0.45 N ATOM 440 CD2 HIS 27 -3.520 -12.135 -5.515 1.00 0.45 C ATOM 441 CE1 HIS 27 -3.897 -12.366 -3.356 1.00 0.45 C ATOM 442 NE2 HIS 27 -4.235 -12.831 -4.570 1.00 0.45 N ATOM 450 N CYS 28 -2.428 -6.409 -5.523 1.00 0.34 N ATOM 451 CA CYS 28 -1.767 -5.124 -5.720 1.00 0.34 C ATOM 452 C CYS 28 -1.904 -4.250 -4.476 1.00 0.34 C ATOM 453 O CYS 28 -2.752 -4.461 -3.608 1.00 0.34 O ATOM 454 CB CYS 28 -2.360 -4.390 -6.924 1.00 0.34 C ATOM 455 SG CYS 28 -2.100 -5.233 -8.503 1.00 0.34 S ATOM 461 N VAL 29 -1.048 -3.244 -4.394 1.00 0.26 N ATOM 462 CA VAL 29 -1.073 -2.206 -3.371 1.00 0.26 C ATOM 463 C VAL 29 -1.124 -0.876 -4.095 1.00 0.26 C ATOM 464 O VAL 29 -0.353 -0.634 -5.030 1.00 0.26 O ATOM 465 CB VAL 29 0.170 -2.273 -2.464 1.00 0.26 C ATOM 466 CG1 VAL 29 0.149 -1.143 -1.446 1.00 0.26 C ATOM 467 CG2 VAL 29 0.231 -3.624 -1.769 1.00 0.26 C ATOM 477 N GLU 30 -2.023 -0.006 -3.653 1.00 0.40 N ATOM 478 CA GLU 30 -2.262 1.285 -4.290 1.00 0.40 C ATOM 479 C GLU 30 -2.124 2.405 -3.258 1.00 0.40 C ATOM 480 O GLU 30 -2.932 2.553 -2.343 1.00 0.40 O ATOM 481 CB GLU 30 -3.650 1.324 -4.933 1.00 0.40 C ATOM 482 CG GLU 30 -3.979 2.631 -5.640 1.00 0.40 C ATOM 483 CD GLU 30 -5.360 2.643 -6.233 1.00 0.40 C ATOM 484 OE1 GLU 30 -6.064 1.677 -6.071 1.00 0.40 O ATOM 485 OE2 GLU 30 -5.711 3.622 -6.849 1.00 0.40 O ATOM 492 N VAL 31 -1.054 3.175 -3.415 1.00 0.25 N ATOM 493 CA VAL 31 -0.725 4.304 -2.555 1.00 0.25 C ATOM 494 C VAL 31 -1.258 5.572 -3.212 1.00 0.25 C ATOM 495 O VAL 31 -1.123 5.744 -4.422 1.00 0.25 O ATOM 496 CB VAL 31 0.796 4.416 -2.344 1.00 0.25 C ATOM 497 CG1 VAL 31 1.129 5.637 -1.499 1.00 0.25 C ATOM 498 CG2 VAL 31 1.322 3.148 -1.690 1.00 0.25 C ATOM 508 N ARG 32 -1.773 6.521 -2.428 1.00 0.60 N ATOM 509 CA ARG 32 -1.922 7.900 -2.895 1.00 0.60 C ATOM 510 C ARG 32 -1.369 8.881 -1.877 1.00 0.60 C ATOM 511 O ARG 32 -1.920 9.053 -0.791 1.00 0.60 O ATOM 512 CB ARG 32 -3.384 8.226 -3.162 1.00 0.60 C ATOM 513 CG ARG 32 -3.643 9.638 -3.663 1.00 0.60 C ATOM 514 CD ARG 32 -5.086 9.870 -3.931 1.00 0.60 C ATOM 515 NE ARG 32 -5.356 11.252 -4.291 1.00 0.60 N ATOM 516 CZ ARG 32 -6.549 11.713 -4.715 1.00 0.60 C ATOM 517 NH1 ARG 32 -7.570 10.892 -4.825 1.00 0.60 N ATOM 518 NH2 ARG 32 -6.693 12.992 -5.018 1.00 0.60 N ATOM 532 N CYS 33 -0.287 9.538 -2.262 1.00 0.66 N ATOM 533 CA CYS 33 0.360 10.602 -1.526 1.00 0.66 C ATOM 534 C CYS 33 -0.123 11.976 -2.008 1.00 0.66 C ATOM 535 O CYS 33 0.362 12.508 -3.006 1.00 0.66 O ATOM 536 CB CYS 33 1.878 10.460 -1.697 1.00 0.66 C ATOM 537 SG CYS 33 2.588 8.971 -0.957 1.00 0.66 S ATOM 542 N SER 34 -1.066 12.572 -1.269 1.00 1.53 N ATOM 543 CA SER 34 -1.814 13.785 -1.652 1.00 1.53 C ATOM 544 C SER 34 -2.527 13.648 -3.019 1.00 1.53 C ATOM 545 O SER 34 -3.481 12.871 -3.098 1.00 1.53 O ATOM 546 CB SER 34 -0.870 14.971 -1.690 1.00 1.53 C ATOM 547 OG SER 34 -1.581 16.174 -1.806 1.00 1.53 O ATOM 553 N ASP 35 -2.089 14.358 -4.068 1.00 1.96 N ATOM 554 CA ASP 35 -2.473 14.045 -5.457 1.00 1.96 C ATOM 555 C ASP 35 -1.824 12.709 -5.914 1.00 1.96 C ATOM 556 O ASP 35 -2.503 11.739 -6.254 1.00 1.96 O ATOM 557 CB ASP 35 -2.059 15.181 -6.396 1.00 1.96 C ATOM 558 CG ASP 35 -2.909 16.432 -6.224 1.00 1.96 C ATOM 559 OD1 ASP 35 -3.952 16.340 -5.620 1.00 1.96 O ATOM 560 OD2 ASP 35 -2.507 17.468 -6.698 1.00 1.96 O ATOM 565 N THR 36 -0.487 12.645 -5.883 1.00 0.77 N ATOM 566 CA THR 36 0.326 11.660 -6.620 1.00 0.77 C ATOM 567 C THR 36 0.049 10.190 -6.250 1.00 0.77 C ATOM 568 O THR 36 0.329 9.727 -5.140 1.00 0.77 O ATOM 569 CB THR 36 1.824 11.949 -6.410 1.00 0.77 C ATOM 570 OG1 THR 36 2.118 13.288 -6.828 1.00 0.77 O ATOM 571 CG2 THR 36 2.672 10.974 -7.212 1.00 0.77 C ATOM 579 N LYS 37 -0.492 9.413 -7.194 1.00 0.49 N ATOM 580 CA LYS 37 -0.641 7.949 -7.098 1.00 0.49 C ATOM 581 C LYS 37 0.680 7.209 -7.328 1.00 0.49 C ATOM 582 O LYS 37 1.380 7.506 -8.296 1.00 0.49 O ATOM 583 CB LYS 37 -1.687 7.456 -8.099 1.00 0.49 C ATOM 584 CG LYS 37 -3.112 7.897 -7.788 1.00 0.49 C ATOM 585 CD LYS 37 -4.103 7.296 -8.774 1.00 0.49 C ATOM 586 CE LYS 37 -5.530 7.713 -8.448 1.00 0.49 C ATOM 587 NZ LYS 37 -6.513 7.117 -9.393 1.00 0.49 N ATOM 601 N TYR 38 0.913 6.148 -6.549 1.00 0.45 N ATOM 602 CA TYR 38 1.901 5.094 -6.821 1.00 0.45 C ATOM 603 C TYR 38 1.215 3.721 -6.765 1.00 0.45 C ATOM 604 O TYR 38 0.181 3.533 -6.115 1.00 0.45 O ATOM 605 CB TYR 38 3.061 5.161 -5.825 1.00 0.45 C ATOM 606 CG TYR 38 3.772 6.497 -5.806 1.00 0.45 C ATOM 607 CD1 TYR 38 3.410 7.461 -4.877 1.00 0.45 C ATOM 608 CD2 TYR 38 4.785 6.756 -6.717 1.00 0.45 C ATOM 609 CE1 TYR 38 4.060 8.681 -4.860 1.00 0.45 C ATOM 610 CE2 TYR 38 5.435 7.975 -6.699 1.00 0.45 C ATOM 611 CZ TYR 38 5.075 8.934 -5.775 1.00 0.45 C ATOM 612 OH TYR 38 5.722 10.149 -5.757 1.00 0.45 O ATOM 622 N THR 39 1.803 2.734 -7.436 1.00 0.54 N ATOM 623 CA THR 39 1.218 1.393 -7.563 1.00 0.54 C ATOM 624 C THR 39 2.325 0.350 -7.526 1.00 0.54 C ATOM 625 O THR 39 3.334 0.478 -8.215 1.00 0.54 O ATOM 626 CB THR 39 0.404 1.247 -8.861 1.00 0.54 C ATOM 627 OG1 THR 39 -0.631 2.238 -8.895 1.00 0.54 O ATOM 628 CG2 THR 39 -0.221 -0.138 -8.945 1.00 0.54 C ATOM 636 N LEU 40 2.157 -0.646 -6.651 1.00 0.43 N ATOM 637 CA LEU 40 3.210 -1.569 -6.226 1.00 0.43 C ATOM 638 C LEU 40 2.664 -3.000 -6.149 1.00 0.43 C ATOM 639 O LEU 40 1.781 -3.303 -5.356 1.00 0.43 O ATOM 640 CB LEU 40 3.772 -1.147 -4.863 1.00 0.43 C ATOM 641 CG LEU 40 4.845 -2.070 -4.272 1.00 0.43 C ATOM 642 CD1 LEU 40 6.074 -2.063 -5.171 1.00 0.43 C ATOM 643 CD2 LEU 40 5.196 -1.606 -2.865 1.00 0.43 C ATOM 655 N CYS 41 3.159 -3.875 -7.023 1.00 0.59 N ATOM 656 CA CYS 41 2.543 -5.168 -7.329 1.00 0.59 C ATOM 657 C CYS 41 2.326 -6.079 -6.111 1.00 0.59 C ATOM 658 O CYS 41 2.646 -5.748 -4.969 1.00 0.59 O ATOM 659 OXT CYS 41 1.828 -7.161 -6.253 1.00 0.59 O ATOM 660 CB CYS 41 3.403 -5.916 -8.348 1.00 0.59 C ATOM 661 SG CYS 41 2.739 -7.527 -8.833 1.00 0.59 S TER END