####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS344_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.03 1.03 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.03 1.03 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 2 - 41 0.86 1.04 LCS_AVERAGE: 97.14 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 33 41 41 3 3 3 4 19 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 40 41 41 4 28 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 40 41 41 14 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 40 41 41 6 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 40 41 41 6 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 40 41 41 5 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 40 41 41 3 22 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 40 41 41 4 15 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 40 41 41 7 31 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 40 41 41 7 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 40 41 41 17 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 40 41 41 7 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 40 41 41 13 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 40 41 41 3 23 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 40 41 41 3 11 34 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 40 41 41 16 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 40 41 41 3 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 40 41 41 19 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 40 41 41 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 40 41 41 5 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 99.05 ( 97.14 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 22 32 38 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 53.66 78.05 92.68 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.54 0.74 0.86 0.86 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 GDT RMS_ALL_AT 1.20 1.16 1.07 1.04 1.04 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 1.03 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.668 0 0.120 0.656 6.477 10.000 6.970 6.477 LGA Q 2 Q 2 0.936 0 0.225 0.954 2.995 81.818 59.192 2.230 LGA E 3 E 3 0.337 0 0.041 1.411 6.384 100.000 58.788 5.736 LGA T 4 T 4 0.344 0 0.013 1.108 2.413 95.455 79.740 2.326 LGA R 5 R 5 0.658 0 0.028 0.273 1.936 81.818 70.413 1.936 LGA K 6 K 6 0.646 0 0.034 1.137 4.509 81.818 53.131 4.460 LGA K 7 K 7 0.547 0 0.016 0.789 4.666 90.909 64.848 4.666 LGA C 8 C 8 0.498 0 0.036 0.752 2.695 90.909 78.788 2.695 LGA T 9 T 9 0.820 0 0.014 0.104 1.404 81.818 74.805 1.125 LGA E 10 E 10 0.927 0 0.022 0.352 1.636 81.818 69.495 1.636 LGA M 11 M 11 0.577 0 0.040 0.101 0.925 86.364 84.091 0.890 LGA K 12 K 12 0.188 0 0.027 0.661 2.065 100.000 84.242 2.039 LGA K 13 K 13 0.495 0 0.053 0.584 1.606 100.000 82.828 1.499 LGA K 14 K 14 0.553 0 0.114 0.605 2.593 81.818 75.758 2.593 LGA F 15 F 15 0.534 0 0.065 0.378 2.630 81.818 65.950 2.182 LGA K 16 K 16 1.218 0 0.051 1.250 4.718 73.636 50.303 4.530 LGA N 17 N 17 0.357 0 0.228 0.472 1.612 90.909 80.455 1.010 LGA C 18 C 18 0.872 0 0.032 0.042 1.022 81.818 79.091 1.022 LGA E 19 E 19 0.981 0 0.199 0.454 2.666 81.818 65.253 1.684 LGA V 20 V 20 1.134 0 0.069 0.084 1.274 65.455 65.455 1.015 LGA R 21 R 21 1.092 0 0.072 1.156 4.871 73.636 41.157 4.871 LGA C 22 C 22 1.372 0 0.155 0.928 4.891 61.818 50.000 4.891 LGA D 23 D 23 1.673 0 0.333 1.154 4.138 42.727 35.227 2.737 LGA E 24 E 24 1.014 0 0.168 0.567 2.509 65.909 53.737 2.509 LGA S 25 S 25 0.684 0 0.091 0.668 2.599 81.818 72.727 2.599 LGA N 26 N 26 0.445 0 0.087 1.186 5.273 100.000 65.909 5.273 LGA H 27 H 27 0.764 0 0.070 0.309 1.863 81.818 72.364 1.409 LGA C 28 C 28 0.693 0 0.140 0.189 1.448 77.727 79.091 0.753 LGA V 29 V 29 0.538 0 0.044 0.066 1.215 90.909 82.338 1.022 LGA E 30 E 30 0.805 0 0.095 0.672 2.915 86.364 64.242 2.915 LGA V 31 V 31 0.409 0 0.116 0.141 0.507 95.455 97.403 0.343 LGA R 32 R 32 0.734 0 0.092 1.029 6.571 81.818 52.893 6.571 LGA C 33 C 33 1.000 0 0.468 0.541 2.901 60.000 61.818 1.256 LGA S 34 S 34 1.098 0 0.148 0.696 2.276 59.091 56.667 2.276 LGA D 35 D 35 2.027 0 0.114 1.014 3.519 51.364 43.409 3.519 LGA T 36 T 36 0.992 0 0.272 1.124 4.014 82.273 64.935 4.014 LGA K 37 K 37 0.438 0 0.074 1.266 4.079 86.818 66.667 4.079 LGA Y 38 Y 38 0.937 0 0.028 1.366 4.913 86.364 56.515 4.913 LGA T 39 T 39 0.475 0 0.102 0.113 1.355 91.364 84.935 0.891 LGA L 40 L 40 0.423 0 0.149 0.955 2.244 95.455 80.000 2.244 LGA C 41 C 41 1.145 0 0.107 0.814 4.246 69.545 59.221 4.246 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.032 1.136 1.896 79.568 65.631 35.521 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.03 93.902 97.390 3.622 LGA_LOCAL RMSD: 1.032 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.032 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.032 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.698682 * X + 0.222194 * Y + -0.680054 * Z + -3.223651 Y_new = -0.659329 * X + 0.568965 * Y + -0.491492 * Z + -11.223876 Z_new = 0.277720 * X + 0.791776 * Y + 0.544025 * Z + -1.331255 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.756428 -0.281420 0.968785 [DEG: -43.3401 -16.1242 55.5073 ] ZXZ: -0.944981 0.995570 0.337348 [DEG: -54.1434 57.0420 19.3286 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS344_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.03 97.390 1.03 REMARK ---------------------------------------------------------- MOLECULE T0955TS344_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -3.224 -11.224 -1.331 1.00 1.60 N ATOM 2 CA SER 1 -2.205 -12.185 -0.926 1.00 1.60 C ATOM 3 C SER 1 -1.504 -11.741 0.351 1.00 1.60 C ATOM 4 O SER 1 -1.585 -10.576 0.742 1.00 1.60 O ATOM 5 CB SER 1 -1.187 -12.365 -2.035 1.00 1.60 C ATOM 6 OG SER 1 -0.374 -11.231 -2.159 1.00 1.60 O ATOM 14 N GLN 2 -0.817 -12.675 0.999 1.00 1.47 N ATOM 15 CA GLN 2 -0.022 -12.360 2.180 1.00 1.47 C ATOM 16 C GLN 2 1.087 -11.369 1.849 1.00 1.47 C ATOM 17 O GLN 2 1.400 -10.484 2.644 1.00 1.47 O ATOM 18 CB GLN 2 0.577 -13.636 2.778 1.00 1.47 C ATOM 19 CG GLN 2 1.318 -13.421 4.087 1.00 1.47 C ATOM 20 CD GLN 2 0.402 -12.938 5.197 1.00 1.47 C ATOM 21 OE1 GLN 2 -0.659 -13.518 5.441 1.00 1.47 O ATOM 22 NE2 GLN 2 0.808 -11.871 5.876 1.00 1.47 N ATOM 31 N GLU 3 1.680 -11.525 0.670 1.00 1.20 N ATOM 32 CA GLU 3 2.738 -10.628 0.220 1.00 1.20 C ATOM 33 C GLU 3 2.210 -9.212 0.018 1.00 1.20 C ATOM 34 O GLU 3 2.889 -8.236 0.336 1.00 1.20 O ATOM 35 CB GLU 3 3.356 -11.144 -1.081 1.00 1.20 C ATOM 36 CG GLU 3 4.143 -12.438 -0.934 1.00 1.20 C ATOM 37 CD GLU 3 5.345 -12.294 -0.043 1.00 1.20 C ATOM 38 OE1 GLU 3 6.043 -11.316 -0.172 1.00 1.20 O ATOM 39 OE2 GLU 3 5.568 -13.162 0.767 1.00 1.20 O ATOM 46 N THR 4 0.997 -9.109 -0.513 1.00 0.70 N ATOM 47 CA THR 4 0.356 -7.815 -0.712 1.00 0.70 C ATOM 48 C THR 4 0.211 -7.064 0.605 1.00 0.70 C ATOM 49 O THR 4 0.520 -5.875 0.691 1.00 0.70 O ATOM 50 CB THR 4 -1.026 -7.976 -1.371 1.00 0.70 C ATOM 51 OG1 THR 4 -0.881 -8.625 -2.641 1.00 0.70 O ATOM 52 CG2 THR 4 -1.684 -6.619 -1.571 1.00 0.70 C ATOM 60 N ARG 5 -0.263 -7.763 1.630 1.00 0.55 N ATOM 61 CA ARG 5 -0.479 -7.156 2.939 1.00 0.55 C ATOM 62 C ARG 5 0.832 -6.664 3.538 1.00 0.55 C ATOM 63 O ARG 5 0.889 -5.584 4.128 1.00 0.55 O ATOM 64 CB ARG 5 -1.126 -8.151 3.891 1.00 0.55 C ATOM 65 CG ARG 5 -2.576 -8.484 3.578 1.00 0.55 C ATOM 66 CD ARG 5 -3.114 -9.515 4.503 1.00 0.55 C ATOM 67 NE ARG 5 -4.513 -9.807 4.235 1.00 0.55 N ATOM 68 CZ ARG 5 -5.212 -10.802 4.816 1.00 0.55 C ATOM 69 NH1 ARG 5 -4.629 -11.590 5.693 1.00 0.55 N ATOM 70 NH2 ARG 5 -6.482 -10.988 4.503 1.00 0.55 N ATOM 84 N LYS 6 1.884 -7.461 3.385 1.00 0.39 N ATOM 85 CA LYS 6 3.203 -7.092 3.885 1.00 0.39 C ATOM 86 C LYS 6 3.740 -5.861 3.168 1.00 0.39 C ATOM 87 O LYS 6 4.328 -4.976 3.789 1.00 0.39 O ATOM 88 CB LYS 6 4.180 -8.260 3.730 1.00 0.39 C ATOM 89 CG LYS 6 3.929 -9.421 4.683 1.00 0.39 C ATOM 90 CD LYS 6 5.076 -10.420 4.651 1.00 0.39 C ATOM 91 CE LYS 6 5.098 -11.196 3.342 1.00 0.39 C ATOM 92 NZ LYS 6 6.169 -12.229 3.327 1.00 0.39 N ATOM 106 N LYS 7 3.534 -5.809 1.856 1.00 0.50 N ATOM 107 CA LYS 7 3.992 -4.681 1.052 1.00 0.50 C ATOM 108 C LYS 7 3.186 -3.425 1.356 1.00 0.50 C ATOM 109 O LYS 7 3.701 -2.310 1.266 1.00 0.50 O ATOM 110 CB LYS 7 3.905 -5.015 -0.438 1.00 0.50 C ATOM 111 CG LYS 7 4.410 -3.912 -1.359 1.00 0.50 C ATOM 112 CD LYS 7 5.877 -3.605 -1.100 1.00 0.50 C ATOM 113 CE LYS 7 6.762 -4.795 -1.442 1.00 0.50 C ATOM 114 NZ LYS 7 8.208 -4.458 -1.349 1.00 0.50 N ATOM 128 N CYS 8 1.921 -3.612 1.715 1.00 0.35 N ATOM 129 CA CYS 8 1.087 -2.512 2.184 1.00 0.35 C ATOM 130 C CYS 8 1.669 -1.876 3.440 1.00 0.35 C ATOM 131 O CYS 8 1.699 -0.652 3.571 1.00 0.35 O ATOM 132 CB CYS 8 -0.332 -2.999 2.477 1.00 0.35 C ATOM 133 SG CYS 8 -1.289 -3.415 0.999 1.00 0.35 S ATOM 139 N THR 9 2.131 -2.714 4.362 1.00 0.36 N ATOM 140 CA THR 9 2.770 -2.235 5.581 1.00 0.36 C ATOM 141 C THR 9 3.996 -1.388 5.265 1.00 0.36 C ATOM 142 O THR 9 4.198 -0.326 5.856 1.00 0.36 O ATOM 143 CB THR 9 3.173 -3.409 6.494 1.00 0.36 C ATOM 144 OG1 THR 9 2.002 -4.136 6.886 1.00 0.36 O ATOM 145 CG2 THR 9 3.888 -2.898 7.735 1.00 0.36 C ATOM 153 N GLU 10 4.812 -1.862 4.330 1.00 0.38 N ATOM 154 CA GLU 10 5.973 -1.109 3.873 1.00 0.38 C ATOM 155 C GLU 10 5.576 0.284 3.402 1.00 0.38 C ATOM 156 O GLU 10 6.202 1.277 3.771 1.00 0.38 O ATOM 157 CB GLU 10 6.683 -1.858 2.743 1.00 0.38 C ATOM 158 CG GLU 10 7.932 -1.165 2.218 1.00 0.38 C ATOM 159 CD GLU 10 8.611 -1.936 1.120 1.00 0.38 C ATOM 160 OE1 GLU 10 8.443 -3.131 1.069 1.00 0.38 O ATOM 161 OE2 GLU 10 9.300 -1.330 0.333 1.00 0.38 O ATOM 168 N MET 11 4.531 0.350 2.582 1.00 0.53 N ATOM 169 CA MET 11 4.068 1.619 2.034 1.00 0.53 C ATOM 170 C MET 11 3.546 2.536 3.133 1.00 0.53 C ATOM 171 O MET 11 3.725 3.753 3.076 1.00 0.53 O ATOM 172 CB MET 11 2.985 1.377 0.984 1.00 0.53 C ATOM 173 CG MET 11 3.482 0.702 -0.287 1.00 0.53 C ATOM 174 SD MET 11 4.744 1.668 -1.141 1.00 0.53 S ATOM 175 CE MET 11 6.237 0.923 -0.492 1.00 0.53 C ATOM 185 N LYS 12 2.900 1.946 4.133 1.00 0.58 N ATOM 186 CA LYS 12 2.380 2.705 5.264 1.00 0.58 C ATOM 187 C LYS 12 3.509 3.320 6.080 1.00 0.58 C ATOM 188 O LYS 12 3.390 4.440 6.578 1.00 0.58 O ATOM 189 CB LYS 12 1.513 1.814 6.154 1.00 0.58 C ATOM 190 CG LYS 12 0.169 1.435 5.547 1.00 0.58 C ATOM 191 CD LYS 12 -0.614 0.513 6.468 1.00 0.58 C ATOM 192 CE LYS 12 -1.952 0.123 5.857 1.00 0.58 C ATOM 193 NZ LYS 12 -2.731 -0.776 6.751 1.00 0.58 N ATOM 207 N LYS 13 4.605 2.582 6.213 1.00 0.67 N ATOM 208 CA LYS 13 5.761 3.054 6.968 1.00 0.67 C ATOM 209 C LYS 13 6.499 4.153 6.214 1.00 0.67 C ATOM 210 O LYS 13 7.014 5.095 6.816 1.00 0.67 O ATOM 211 CB LYS 13 6.712 1.896 7.273 1.00 0.67 C ATOM 212 CG LYS 13 6.191 0.912 8.312 1.00 0.67 C ATOM 213 CD LYS 13 7.193 -0.204 8.565 1.00 0.67 C ATOM 214 CE LYS 13 6.715 -1.137 9.669 1.00 0.67 C ATOM 215 NZ LYS 13 7.675 -2.248 9.914 1.00 0.67 N ATOM 229 N LYS 14 6.548 4.026 4.892 1.00 1.02 N ATOM 230 CA LYS 14 7.266 4.981 4.056 1.00 1.02 C ATOM 231 C LYS 14 6.394 6.185 3.723 1.00 1.02 C ATOM 232 O LYS 14 6.766 7.327 3.994 1.00 1.02 O ATOM 233 CB LYS 14 7.749 4.309 2.770 1.00 1.02 C ATOM 234 CG LYS 14 8.872 3.300 2.970 1.00 1.02 C ATOM 235 CD LYS 14 9.250 2.626 1.660 1.00 1.02 C ATOM 236 CE LYS 14 10.446 1.702 1.836 1.00 1.02 C ATOM 237 NZ LYS 14 10.767 0.961 0.587 1.00 1.02 N ATOM 251 N PHE 15 5.231 5.923 3.135 1.00 0.82 N ATOM 252 CA PHE 15 4.309 6.987 2.756 1.00 0.82 C ATOM 253 C PHE 15 3.377 7.343 3.907 1.00 0.82 C ATOM 254 O PHE 15 2.166 7.133 3.827 1.00 0.82 O ATOM 255 CB PHE 15 3.484 6.570 1.536 1.00 0.82 C ATOM 256 CG PHE 15 4.298 6.394 0.286 1.00 0.82 C ATOM 257 CD1 PHE 15 4.855 5.163 -0.028 1.00 0.82 C ATOM 258 CD2 PHE 15 4.508 7.458 -0.578 1.00 0.82 C ATOM 259 CE1 PHE 15 5.603 5.000 -1.178 1.00 0.82 C ATOM 260 CE2 PHE 15 5.255 7.298 -1.728 1.00 0.82 C ATOM 261 CZ PHE 15 5.804 6.066 -2.028 1.00 0.82 C ATOM 271 N LYS 16 3.949 7.884 4.978 1.00 1.44 N ATOM 272 CA LYS 16 3.209 8.095 6.217 1.00 1.44 C ATOM 273 C LYS 16 2.034 9.042 6.003 1.00 1.44 C ATOM 274 O LYS 16 1.027 8.965 6.706 1.00 1.44 O ATOM 275 CB LYS 16 4.133 8.640 7.307 1.00 1.44 C ATOM 276 CG LYS 16 5.158 7.639 7.821 1.00 1.44 C ATOM 277 CD LYS 16 6.046 8.257 8.891 1.00 1.44 C ATOM 278 CE LYS 16 7.073 7.258 9.404 1.00 1.44 C ATOM 279 NZ LYS 16 7.971 7.860 10.427 1.00 1.44 N ATOM 293 N ASN 17 2.171 9.934 5.028 1.00 1.36 N ATOM 294 CA ASN 17 1.202 11.006 4.828 1.00 1.36 C ATOM 295 C ASN 17 0.243 10.675 3.692 1.00 1.36 C ATOM 296 O ASN 17 -0.429 11.559 3.158 1.00 1.36 O ATOM 297 CB ASN 17 1.908 12.323 4.568 1.00 1.36 C ATOM 298 CG ASN 17 2.655 12.827 5.771 1.00 1.36 C ATOM 299 OD1 ASN 17 2.161 12.745 6.902 1.00 1.36 O ATOM 300 ND2 ASN 17 3.834 13.347 5.551 1.00 1.36 N ATOM 307 N CYS 18 0.183 9.400 3.325 1.00 0.68 N ATOM 308 CA CYS 18 -0.658 8.959 2.220 1.00 0.68 C ATOM 309 C CYS 18 -1.587 7.831 2.649 1.00 0.68 C ATOM 310 O CYS 18 -1.380 7.206 3.691 1.00 0.68 O ATOM 311 CB CYS 18 0.201 8.486 1.047 1.00 0.68 C ATOM 312 SG CYS 18 1.394 9.713 0.463 1.00 0.68 S ATOM 318 N GLU 19 -2.610 7.574 1.842 1.00 0.30 N ATOM 319 CA GLU 19 -3.536 6.479 2.104 1.00 0.30 C ATOM 320 C GLU 19 -3.103 5.207 1.389 1.00 0.30 C ATOM 321 O GLU 19 -2.854 5.215 0.183 1.00 0.30 O ATOM 322 CB GLU 19 -4.953 6.862 1.670 1.00 0.30 C ATOM 323 CG GLU 19 -6.002 5.791 1.933 1.00 0.30 C ATOM 324 CD GLU 19 -7.378 6.201 1.489 1.00 0.30 C ATOM 325 OE1 GLU 19 -7.524 7.293 0.995 1.00 0.30 O ATOM 326 OE2 GLU 19 -8.288 5.419 1.644 1.00 0.30 O ATOM 333 N VAL 20 -3.013 4.113 2.138 1.00 0.32 N ATOM 334 CA VAL 20 -2.596 2.833 1.578 1.00 0.32 C ATOM 335 C VAL 20 -3.687 1.782 1.733 1.00 0.32 C ATOM 336 O VAL 20 -4.221 1.584 2.824 1.00 0.32 O ATOM 337 CB VAL 20 -1.311 2.340 2.270 1.00 0.32 C ATOM 338 CG1 VAL 20 -0.880 0.998 1.698 1.00 0.32 C ATOM 339 CG2 VAL 20 -0.208 3.375 2.111 1.00 0.32 C ATOM 349 N ARG 21 -4.015 1.110 0.635 1.00 0.71 N ATOM 350 CA ARG 21 -5.070 0.104 0.639 1.00 0.71 C ATOM 351 C ARG 21 -4.557 -1.233 0.118 1.00 0.71 C ATOM 352 O ARG 21 -3.698 -1.280 -0.762 1.00 0.71 O ATOM 353 CB ARG 21 -6.246 0.558 -0.212 1.00 0.71 C ATOM 354 CG ARG 21 -6.954 1.807 0.290 1.00 0.71 C ATOM 355 CD ARG 21 -8.130 2.147 -0.551 1.00 0.71 C ATOM 356 NE ARG 21 -8.789 3.361 -0.097 1.00 0.71 N ATOM 357 CZ ARG 21 -9.931 3.853 -0.616 1.00 0.71 C ATOM 358 NH1 ARG 21 -10.527 3.223 -1.604 1.00 0.71 N ATOM 359 NH2 ARG 21 -10.451 4.966 -0.132 1.00 0.71 N ATOM 373 N CYS 22 -5.089 -2.319 0.668 1.00 0.46 N ATOM 374 CA CYS 22 -4.773 -3.657 0.182 1.00 0.46 C ATOM 375 C CYS 22 -5.869 -4.184 -0.734 1.00 0.46 C ATOM 376 O CYS 22 -6.996 -4.420 -0.299 1.00 0.46 O ATOM 377 CB CYS 22 -4.586 -4.624 1.351 1.00 0.46 C ATOM 378 SG CYS 22 -4.200 -6.320 0.853 1.00 0.46 S ATOM 384 N ASP 23 -5.532 -4.366 -2.007 1.00 0.40 N ATOM 385 CA ASP 23 -6.483 -4.882 -2.985 1.00 0.40 C ATOM 386 C ASP 23 -6.391 -6.398 -3.097 1.00 0.40 C ATOM 387 O ASP 23 -5.536 -6.927 -3.809 1.00 0.40 O ATOM 388 CB ASP 23 -6.239 -4.247 -4.356 1.00 0.40 C ATOM 389 CG ASP 23 -7.202 -4.750 -5.422 1.00 0.40 C ATOM 390 OD1 ASP 23 -7.828 -5.760 -5.200 1.00 0.40 O ATOM 391 OD2 ASP 23 -7.303 -4.121 -6.449 1.00 0.40 O ATOM 396 N GLU 24 -7.275 -7.094 -2.391 1.00 0.75 N ATOM 397 CA GLU 24 -7.187 -8.543 -2.266 1.00 0.75 C ATOM 398 C GLU 24 -7.904 -9.240 -3.416 1.00 0.75 C ATOM 399 O GLU 24 -8.007 -10.466 -3.445 1.00 0.75 O ATOM 400 CB GLU 24 -7.779 -9.001 -0.931 1.00 0.75 C ATOM 401 CG GLU 24 -6.995 -8.548 0.293 1.00 0.75 C ATOM 402 CD GLU 24 -7.558 -9.084 1.578 1.00 0.75 C ATOM 403 OE1 GLU 24 -8.670 -9.556 1.567 1.00 0.75 O ATOM 404 OE2 GLU 24 -6.875 -9.023 2.574 1.00 0.75 O ATOM 411 N SER 25 -8.397 -8.450 -4.364 1.00 1.01 N ATOM 412 CA SER 25 -9.035 -8.992 -5.558 1.00 1.01 C ATOM 413 C SER 25 -8.077 -8.995 -6.741 1.00 1.01 C ATOM 414 O SER 25 -8.200 -9.818 -7.649 1.00 1.01 O ATOM 415 CB SER 25 -10.273 -8.186 -5.900 1.00 1.01 C ATOM 416 OG SER 25 -9.933 -6.879 -6.278 1.00 1.01 O ATOM 422 N ASN 26 -7.123 -8.070 -6.726 1.00 0.67 N ATOM 423 CA ASN 26 -6.052 -8.059 -7.716 1.00 0.67 C ATOM 424 C ASN 26 -4.700 -8.327 -7.068 1.00 0.67 C ATOM 425 O ASN 26 -3.679 -8.406 -7.751 1.00 0.67 O ATOM 426 CB ASN 26 -6.033 -6.740 -8.467 1.00 0.67 C ATOM 427 CG ASN 26 -7.268 -6.530 -9.298 1.00 0.67 C ATOM 428 OD1 ASN 26 -7.492 -7.238 -10.288 1.00 0.67 O ATOM 429 ND2 ASN 26 -8.074 -5.572 -8.917 1.00 0.67 N ATOM 436 N HIS 27 -4.700 -8.465 -5.746 1.00 0.71 N ATOM 437 CA HIS 27 -3.474 -8.732 -5.004 1.00 0.71 C ATOM 438 C HIS 27 -2.444 -7.632 -5.230 1.00 0.71 C ATOM 439 O HIS 27 -1.262 -7.909 -5.437 1.00 0.71 O ATOM 440 CB HIS 27 -2.880 -10.085 -5.408 1.00 0.71 C ATOM 441 CG HIS 27 -3.830 -11.232 -5.244 1.00 0.71 C ATOM 442 ND1 HIS 27 -4.227 -11.697 -4.007 1.00 0.71 N ATOM 443 CD2 HIS 27 -4.460 -12.005 -6.158 1.00 0.71 C ATOM 444 CE1 HIS 27 -5.062 -12.709 -4.170 1.00 0.71 C ATOM 445 NE2 HIS 27 -5.219 -12.915 -5.464 1.00 0.71 N ATOM 453 N CYS 28 -2.898 -6.385 -5.187 1.00 0.35 N ATOM 454 CA CYS 28 -2.032 -5.244 -5.457 1.00 0.35 C ATOM 455 C CYS 28 -2.029 -4.266 -4.288 1.00 0.35 C ATOM 456 O CYS 28 -2.935 -4.276 -3.456 1.00 0.35 O ATOM 457 CB CYS 28 -2.481 -4.515 -6.723 1.00 0.35 C ATOM 458 SG CYS 28 -2.404 -5.524 -8.222 1.00 0.35 S ATOM 464 N VAL 29 -1.004 -3.421 -4.233 1.00 0.31 N ATOM 465 CA VAL 29 -0.929 -2.374 -3.222 1.00 0.31 C ATOM 466 C VAL 29 -1.207 -1.004 -3.827 1.00 0.31 C ATOM 467 O VAL 29 -0.556 -0.595 -4.788 1.00 0.31 O ATOM 468 CB VAL 29 0.463 -2.368 -2.563 1.00 0.31 C ATOM 469 CG1 VAL 29 0.547 -1.274 -1.508 1.00 0.31 C ATOM 470 CG2 VAL 29 0.752 -3.730 -1.950 1.00 0.31 C ATOM 480 N GLU 30 -2.179 -0.298 -3.258 1.00 0.52 N ATOM 481 CA GLU 30 -2.572 1.012 -3.765 1.00 0.52 C ATOM 482 C GLU 30 -2.169 2.119 -2.799 1.00 0.52 C ATOM 483 O GLU 30 -2.546 2.100 -1.626 1.00 0.52 O ATOM 484 CB GLU 30 -4.082 1.059 -4.009 1.00 0.52 C ATOM 485 CG GLU 30 -4.590 2.386 -4.553 1.00 0.52 C ATOM 486 CD GLU 30 -6.070 2.384 -4.812 1.00 0.52 C ATOM 487 OE1 GLU 30 -6.697 1.384 -4.560 1.00 0.52 O ATOM 488 OE2 GLU 30 -6.576 3.386 -5.264 1.00 0.52 O ATOM 495 N VAL 31 -1.404 3.084 -3.297 1.00 0.19 N ATOM 496 CA VAL 31 -0.967 4.213 -2.485 1.00 0.19 C ATOM 497 C VAL 31 -1.421 5.535 -3.091 1.00 0.19 C ATOM 498 O VAL 31 -0.981 5.914 -4.177 1.00 0.19 O ATOM 499 CB VAL 31 0.567 4.213 -2.350 1.00 0.19 C ATOM 500 CG1 VAL 31 1.026 5.384 -1.494 1.00 0.19 C ATOM 501 CG2 VAL 31 1.035 2.894 -1.754 1.00 0.19 C ATOM 511 N ARG 32 -2.303 6.234 -2.384 1.00 0.73 N ATOM 512 CA ARG 32 -2.862 7.485 -2.878 1.00 0.73 C ATOM 513 C ARG 32 -2.187 8.686 -2.224 1.00 0.73 C ATOM 514 O ARG 32 -2.374 8.944 -1.035 1.00 0.73 O ATOM 515 CB ARG 32 -4.359 7.544 -2.614 1.00 0.73 C ATOM 516 CG ARG 32 -5.052 8.792 -3.136 1.00 0.73 C ATOM 517 CD ARG 32 -6.512 8.767 -2.862 1.00 0.73 C ATOM 518 NE ARG 32 -6.796 8.845 -1.437 1.00 0.73 N ATOM 519 CZ ARG 32 -6.904 9.993 -0.740 1.00 0.73 C ATOM 520 NH1 ARG 32 -6.748 11.148 -1.349 1.00 0.73 N ATOM 521 NH2 ARG 32 -7.166 9.958 0.554 1.00 0.73 N ATOM 535 N CYS 33 -1.403 9.417 -3.010 1.00 1.06 N ATOM 536 CA CYS 33 -0.643 10.549 -2.493 1.00 1.06 C ATOM 537 C CYS 33 -1.305 11.871 -2.860 1.00 1.06 C ATOM 538 O CYS 33 -2.193 11.915 -3.711 1.00 1.06 O ATOM 539 CB CYS 33 0.786 10.530 -3.038 1.00 1.06 C ATOM 540 SG CYS 33 1.697 9.012 -2.671 1.00 1.06 S ATOM 546 N SER 34 -0.866 12.945 -2.213 1.00 1.00 N ATOM 547 CA SER 34 -1.343 14.284 -2.542 1.00 1.00 C ATOM 548 C SER 34 -0.965 14.668 -3.968 1.00 1.00 C ATOM 549 O SER 34 -1.749 15.297 -4.679 1.00 1.00 O ATOM 550 CB SER 34 -0.771 15.295 -1.568 1.00 1.00 C ATOM 551 OG SER 34 0.621 15.390 -1.701 1.00 1.00 O ATOM 557 N ASP 35 0.239 14.287 -4.379 1.00 2.80 N ATOM 558 CA ASP 35 0.758 14.668 -5.687 1.00 2.80 C ATOM 559 C ASP 35 0.385 13.642 -6.749 1.00 2.80 C ATOM 560 O ASP 35 -0.176 13.986 -7.789 1.00 2.80 O ATOM 561 CB ASP 35 2.280 14.826 -5.636 1.00 2.80 C ATOM 562 CG ASP 35 2.724 15.998 -4.772 1.00 2.80 C ATOM 563 OD1 ASP 35 1.898 16.817 -4.445 1.00 2.80 O ATOM 564 OD2 ASP 35 3.886 16.063 -4.447 1.00 2.80 O ATOM 569 N THR 36 0.697 12.378 -6.479 1.00 0.75 N ATOM 570 CA THR 36 0.582 11.329 -7.485 1.00 0.75 C ATOM 571 C THR 36 0.008 10.052 -6.887 1.00 0.75 C ATOM 572 O THR 36 -0.560 10.068 -5.795 1.00 0.75 O ATOM 573 CB THR 36 1.947 11.029 -8.131 1.00 0.75 C ATOM 574 OG1 THR 36 1.768 10.144 -9.245 1.00 0.75 O ATOM 575 CG2 THR 36 2.885 10.384 -7.123 1.00 0.75 C ATOM 583 N LYS 37 0.158 8.946 -7.608 1.00 0.53 N ATOM 584 CA LYS 37 -0.363 7.661 -7.158 1.00 0.53 C ATOM 585 C LYS 37 0.570 6.522 -7.548 1.00 0.53 C ATOM 586 O LYS 37 1.111 6.500 -8.653 1.00 0.53 O ATOM 587 CB LYS 37 -1.759 7.419 -7.732 1.00 0.53 C ATOM 588 CG LYS 37 -2.462 6.188 -7.178 1.00 0.53 C ATOM 589 CD LYS 37 -3.899 6.102 -7.671 1.00 0.53 C ATOM 590 CE LYS 37 -4.652 4.967 -6.992 1.00 0.53 C ATOM 591 NZ LYS 37 -6.075 4.906 -7.425 1.00 0.53 N ATOM 605 N TYR 38 0.755 5.575 -6.634 1.00 0.59 N ATOM 606 CA TYR 38 1.620 4.429 -6.882 1.00 0.59 C ATOM 607 C TYR 38 0.839 3.123 -6.807 1.00 0.59 C ATOM 608 O TYR 38 -0.098 2.994 -6.019 1.00 0.59 O ATOM 609 CB TYR 38 2.783 4.409 -5.886 1.00 0.59 C ATOM 610 CG TYR 38 3.656 5.641 -5.945 1.00 0.59 C ATOM 611 CD1 TYR 38 3.417 6.705 -5.087 1.00 0.59 C ATOM 612 CD2 TYR 38 4.699 5.710 -6.857 1.00 0.59 C ATOM 613 CE1 TYR 38 4.215 7.830 -5.140 1.00 0.59 C ATOM 614 CE2 TYR 38 5.499 6.835 -6.911 1.00 0.59 C ATOM 615 CZ TYR 38 5.259 7.892 -6.057 1.00 0.59 C ATOM 616 OH TYR 38 6.056 9.013 -6.111 1.00 0.59 O ATOM 626 N THR 39 1.230 2.157 -7.632 1.00 0.71 N ATOM 627 CA THR 39 0.738 0.792 -7.501 1.00 0.71 C ATOM 628 C THR 39 1.886 -0.208 -7.482 1.00 0.71 C ATOM 629 O THR 39 2.788 -0.149 -8.317 1.00 0.71 O ATOM 630 CB THR 39 -0.235 0.441 -8.642 1.00 0.71 C ATOM 631 OG1 THR 39 -1.350 1.342 -8.616 1.00 0.71 O ATOM 632 CG2 THR 39 -0.738 -0.987 -8.495 1.00 0.71 C ATOM 640 N LEU 40 1.848 -1.128 -6.523 1.00 0.66 N ATOM 641 CA LEU 40 2.878 -2.152 -6.402 1.00 0.66 C ATOM 642 C LEU 40 2.275 -3.549 -6.453 1.00 0.66 C ATOM 643 O LEU 40 1.174 -3.780 -5.952 1.00 0.66 O ATOM 644 CB LEU 40 3.655 -1.971 -5.092 1.00 0.66 C ATOM 645 CG LEU 40 4.411 -0.645 -4.943 1.00 0.66 C ATOM 646 CD1 LEU 40 5.039 -0.570 -3.559 1.00 0.66 C ATOM 647 CD2 LEU 40 5.469 -0.540 -6.031 1.00 0.66 C ATOM 659 N CYS 41 3.002 -4.481 -7.061 1.00 0.75 N ATOM 660 CA CYS 41 2.579 -5.876 -7.106 1.00 0.75 C ATOM 661 C CYS 41 3.646 -6.792 -6.523 1.00 0.75 C ATOM 662 O CYS 41 3.750 -6.912 -5.333 1.00 0.75 O ATOM 663 OXT CYS 41 4.383 -7.396 -7.253 1.00 0.75 O ATOM 664 CB CYS 41 2.278 -6.301 -8.543 1.00 0.75 C ATOM 665 SG CYS 41 1.721 -8.014 -8.704 1.00 0.75 S TER END