####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS344_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.32 1.32 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.32 1.32 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 5 - 32 1.00 1.41 LCS_AVERAGE: 63.77 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 5 10 31 35 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 10 20 33 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 41 41 8 25 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 20 41 41 12 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 28 41 41 3 18 26 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 28 41 41 4 23 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 28 41 41 5 23 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 28 41 41 12 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 28 41 41 8 24 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 28 41 41 8 26 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 28 41 41 8 23 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 28 41 41 8 14 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 28 41 41 10 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 28 41 41 11 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 28 41 41 8 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 28 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 28 41 41 13 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 28 41 41 9 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 25 41 41 4 26 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 25 41 41 4 19 33 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 25 41 41 5 27 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 25 41 41 9 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 25 41 41 13 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 25 41 41 8 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 25 41 41 5 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 25 41 41 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 25 41 41 3 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 87.92 ( 63.77 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 28 36 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 34.15 68.29 87.80 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.67 0.90 1.02 1.08 1.08 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 GDT RMS_ALL_AT 1.55 1.37 1.37 1.34 1.34 1.34 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 1.32 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.740 0 0.159 0.774 7.288 3.182 2.121 6.394 LGA Q 2 Q 2 1.667 0 0.223 0.950 2.308 59.091 53.333 1.813 LGA E 3 E 3 1.036 0 0.047 1.411 5.394 73.636 42.626 5.370 LGA T 4 T 4 0.699 0 0.023 1.122 2.356 90.909 74.545 2.212 LGA R 5 R 5 0.607 0 0.024 0.264 2.906 86.364 63.802 2.771 LGA K 6 K 6 0.389 0 0.029 1.151 5.192 95.455 58.990 5.192 LGA K 7 K 7 0.259 0 0.019 0.656 2.568 100.000 71.313 2.568 LGA C 8 C 8 0.341 0 0.041 0.753 2.473 90.909 83.636 2.473 LGA T 9 T 9 0.934 0 0.015 0.103 1.628 77.727 70.390 1.212 LGA E 10 E 10 1.099 0 0.029 0.310 1.441 73.636 69.091 1.400 LGA M 11 M 11 0.681 0 0.043 0.112 1.005 81.818 79.773 1.005 LGA K 12 K 12 0.514 0 0.017 0.659 1.851 81.818 76.970 1.693 LGA K 13 K 13 1.055 0 0.015 0.579 1.943 69.545 65.859 1.943 LGA K 14 K 14 1.066 0 0.027 0.624 3.420 65.455 60.202 3.420 LGA F 15 F 15 0.890 0 0.174 0.338 2.818 73.636 61.653 2.458 LGA K 16 K 16 2.283 0 0.666 1.346 5.976 39.545 25.859 5.976 LGA N 17 N 17 1.862 0 0.336 0.574 4.115 65.909 41.591 4.115 LGA C 18 C 18 1.602 0 0.028 0.057 1.847 58.182 58.182 1.788 LGA E 19 E 19 0.976 0 0.175 0.380 1.200 77.727 78.182 0.765 LGA V 20 V 20 1.249 0 0.076 0.095 1.627 61.818 63.377 1.348 LGA R 21 R 21 1.302 0 0.052 1.146 4.608 69.545 44.463 4.558 LGA C 22 C 22 1.680 0 0.165 0.935 4.777 50.909 42.727 4.777 LGA D 23 D 23 2.040 0 0.392 1.179 4.698 34.545 28.409 3.377 LGA E 24 E 24 0.402 0 0.020 0.603 2.344 95.455 68.485 2.151 LGA S 25 S 25 0.703 0 0.021 0.084 1.156 81.818 76.364 1.156 LGA N 26 N 26 1.064 0 0.106 1.187 5.578 77.727 50.682 5.578 LGA H 27 H 27 0.714 0 0.062 0.229 1.105 81.818 78.545 1.039 LGA C 28 C 28 0.748 0 0.138 0.187 1.462 77.727 79.091 0.548 LGA V 29 V 29 0.630 0 0.083 0.110 0.890 81.818 81.818 0.813 LGA E 30 E 30 0.447 0 0.021 0.607 3.250 100.000 64.646 2.737 LGA V 31 V 31 0.341 0 0.042 1.164 2.629 100.000 80.000 1.912 LGA R 32 R 32 0.528 0 0.138 0.929 6.791 78.636 46.281 6.791 LGA C 33 C 33 1.041 0 0.535 1.023 3.824 52.273 52.121 2.164 LGA S 34 S 34 1.687 0 0.247 0.589 2.299 47.727 46.667 2.251 LGA D 35 D 35 1.715 0 0.222 0.933 6.091 58.182 34.091 6.091 LGA T 36 T 36 1.114 0 0.041 0.139 1.832 78.182 68.571 1.832 LGA K 37 K 37 0.080 0 0.083 1.222 3.930 86.818 67.273 3.930 LGA Y 38 Y 38 0.870 0 0.011 1.358 5.373 90.909 54.848 5.373 LGA T 39 T 39 0.997 0 0.103 0.115 2.268 70.000 60.000 1.784 LGA L 40 L 40 0.200 0 0.075 0.997 3.636 95.455 69.773 3.636 LGA C 41 C 41 1.215 0 0.107 0.813 3.556 61.818 55.584 3.556 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.316 1.432 2.163 73.115 59.803 33.747 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.32 90.854 95.935 2.895 LGA_LOCAL RMSD: 1.316 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.316 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.316 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.927761 * X + 0.344795 * Y + 0.142742 * Z + -4.928845 Y_new = -0.012199 * X + 0.410324 * Y + -0.911858 * Z + -12.096103 Z_new = -0.372975 * X + 0.844245 * Y + 0.384889 * Z + 1.214592 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.013148 0.382213 1.143049 [DEG: -0.7533 21.8992 65.4919 ] ZXZ: 0.155280 1.175709 -0.416001 [DEG: 8.8969 67.3632 -23.8351 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS344_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS344_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.32 95.935 1.32 REMARK ---------------------------------------------------------- MOLECULE T0955TS344_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -4.929 -12.096 1.215 1.00 1.31 N ATOM 2 CA SER 1 -3.576 -12.114 0.671 1.00 1.31 C ATOM 3 C SER 1 -2.575 -11.538 1.664 1.00 1.31 C ATOM 4 O SER 1 -2.436 -10.320 1.785 1.00 1.31 O ATOM 5 CB SER 1 -3.524 -11.329 -0.625 1.00 1.31 C ATOM 6 OG SER 1 -2.224 -11.308 -1.148 1.00 1.31 O ATOM 14 N GLN 2 -1.879 -12.420 2.374 1.00 0.83 N ATOM 15 CA GLN 2 -0.889 -12.000 3.358 1.00 0.83 C ATOM 16 C GLN 2 0.241 -11.216 2.704 1.00 0.83 C ATOM 17 O GLN 2 0.752 -10.253 3.274 1.00 0.83 O ATOM 18 CB GLN 2 -0.322 -13.213 4.100 1.00 0.83 C ATOM 19 CG GLN 2 0.617 -12.862 5.241 1.00 0.83 C ATOM 20 CD GLN 2 -0.084 -12.111 6.357 1.00 0.83 C ATOM 21 OE1 GLN 2 -1.148 -12.521 6.828 1.00 0.83 O ATOM 22 NE2 GLN 2 0.510 -11.004 6.788 1.00 0.83 N ATOM 31 N GLU 3 0.626 -11.635 1.503 1.00 0.73 N ATOM 32 CA GLU 3 1.739 -11.012 0.796 1.00 0.73 C ATOM 33 C GLU 3 1.423 -9.566 0.436 1.00 0.73 C ATOM 34 O GLU 3 2.281 -8.689 0.537 1.00 0.73 O ATOM 35 CB GLU 3 2.073 -11.802 -0.472 1.00 0.73 C ATOM 36 CG GLU 3 2.693 -13.168 -0.216 1.00 0.73 C ATOM 37 CD GLU 3 4.027 -13.085 0.473 1.00 0.73 C ATOM 38 OE1 GLU 3 4.853 -12.319 0.039 1.00 0.73 O ATOM 39 OE2 GLU 3 4.219 -13.790 1.437 1.00 0.73 O ATOM 46 N THR 4 0.187 -9.322 0.015 1.00 0.55 N ATOM 47 CA THR 4 -0.254 -7.977 -0.332 1.00 0.55 C ATOM 48 C THR 4 -0.287 -7.075 0.896 1.00 0.55 C ATOM 49 O THR 4 0.111 -5.912 0.835 1.00 0.55 O ATOM 50 CB THR 4 -1.644 -8.002 -0.993 1.00 0.55 C ATOM 51 OG1 THR 4 -1.603 -8.825 -2.166 1.00 0.55 O ATOM 52 CG2 THR 4 -2.075 -6.596 -1.380 1.00 0.55 C ATOM 60 N ARG 5 -0.764 -7.620 2.011 1.00 0.48 N ATOM 61 CA ARG 5 -0.854 -6.864 3.254 1.00 0.48 C ATOM 62 C ARG 5 0.526 -6.448 3.746 1.00 0.48 C ATOM 63 O ARG 5 0.713 -5.333 4.235 1.00 0.48 O ATOM 64 CB ARG 5 -1.545 -7.687 4.331 1.00 0.48 C ATOM 65 CG ARG 5 -3.022 -7.948 4.086 1.00 0.48 C ATOM 66 CD ARG 5 -3.596 -8.860 5.108 1.00 0.48 C ATOM 67 NE ARG 5 -4.962 -9.246 4.786 1.00 0.48 N ATOM 68 CZ ARG 5 -5.728 -10.053 5.546 1.00 0.48 C ATOM 69 NH1 ARG 5 -5.251 -10.549 6.665 1.00 0.48 N ATOM 70 NH2 ARG 5 -6.960 -10.345 5.166 1.00 0.48 N ATOM 84 N LYS 6 1.493 -7.351 3.614 1.00 0.29 N ATOM 85 CA LYS 6 2.876 -7.050 3.967 1.00 0.29 C ATOM 86 C LYS 6 3.437 -5.935 3.093 1.00 0.29 C ATOM 87 O LYS 6 4.130 -5.042 3.580 1.00 0.29 O ATOM 88 CB LYS 6 3.745 -8.303 3.843 1.00 0.29 C ATOM 89 CG LYS 6 3.511 -9.340 4.933 1.00 0.29 C ATOM 90 CD LYS 6 4.561 -10.441 4.882 1.00 0.29 C ATOM 91 CE LYS 6 4.345 -11.358 3.687 1.00 0.29 C ATOM 92 NZ LYS 6 5.293 -12.505 3.687 1.00 0.29 N ATOM 106 N LYS 7 3.134 -5.994 1.801 1.00 0.33 N ATOM 107 CA LYS 7 3.539 -4.946 0.872 1.00 0.33 C ATOM 108 C LYS 7 2.876 -3.618 1.214 1.00 0.33 C ATOM 109 O LYS 7 3.487 -2.557 1.085 1.00 0.33 O ATOM 110 CB LYS 7 3.203 -5.347 -0.566 1.00 0.33 C ATOM 111 CG LYS 7 4.069 -6.467 -1.126 1.00 0.33 C ATOM 112 CD LYS 7 3.631 -6.854 -2.530 1.00 0.33 C ATOM 113 CE LYS 7 4.440 -8.029 -3.059 1.00 0.33 C ATOM 114 NZ LYS 7 3.990 -8.451 -4.413 1.00 0.33 N ATOM 128 N CYS 8 1.625 -3.683 1.654 1.00 0.27 N ATOM 129 CA CYS 8 0.905 -2.495 2.097 1.00 0.27 C ATOM 130 C CYS 8 1.605 -1.835 3.278 1.00 0.27 C ATOM 131 O CYS 8 1.717 -0.611 3.340 1.00 0.27 O ATOM 132 CB CYS 8 -0.528 -2.850 2.495 1.00 0.27 C ATOM 133 SG CYS 8 -1.594 -3.286 1.100 1.00 0.27 S ATOM 139 N THR 9 2.075 -2.654 4.213 1.00 0.37 N ATOM 140 CA THR 9 2.789 -2.152 5.381 1.00 0.37 C ATOM 141 C THR 9 4.014 -1.345 4.973 1.00 0.37 C ATOM 142 O THR 9 4.281 -0.279 5.529 1.00 0.37 O ATOM 143 CB THR 9 3.214 -3.305 6.308 1.00 0.37 C ATOM 144 OG1 THR 9 2.052 -3.997 6.782 1.00 0.37 O ATOM 145 CG2 THR 9 4.001 -2.773 7.497 1.00 0.37 C ATOM 153 N GLU 10 4.758 -1.858 3.999 1.00 0.42 N ATOM 154 CA GLU 10 5.954 -1.182 3.511 1.00 0.42 C ATOM 155 C GLU 10 5.613 0.174 2.908 1.00 0.42 C ATOM 156 O GLU 10 6.351 1.144 3.080 1.00 0.42 O ATOM 157 CB GLU 10 6.669 -2.048 2.470 1.00 0.42 C ATOM 158 CG GLU 10 7.919 -1.413 1.878 1.00 0.42 C ATOM 159 CD GLU 10 8.617 -2.309 0.892 1.00 0.42 C ATOM 160 OE1 GLU 10 8.515 -3.505 1.028 1.00 0.42 O ATOM 161 OE2 GLU 10 9.252 -1.796 0.001 1.00 0.42 O ATOM 168 N MET 11 4.490 0.236 2.201 1.00 0.43 N ATOM 169 CA MET 11 4.029 1.484 1.602 1.00 0.43 C ATOM 170 C MET 11 3.606 2.483 2.670 1.00 0.43 C ATOM 171 O MET 11 3.828 3.686 2.530 1.00 0.43 O ATOM 172 CB MET 11 2.874 1.213 0.640 1.00 0.43 C ATOM 173 CG MET 11 3.265 0.443 -0.614 1.00 0.43 C ATOM 174 SD MET 11 4.474 1.326 -1.622 1.00 0.43 S ATOM 175 CE MET 11 6.005 0.667 -0.967 1.00 0.43 C ATOM 185 N LYS 12 2.997 1.979 3.739 1.00 0.45 N ATOM 186 CA LYS 12 2.576 2.824 4.850 1.00 0.45 C ATOM 187 C LYS 12 3.775 3.448 5.552 1.00 0.45 C ATOM 188 O LYS 12 3.709 4.583 6.023 1.00 0.45 O ATOM 189 CB LYS 12 1.743 2.019 5.848 1.00 0.45 C ATOM 190 CG LYS 12 0.357 1.636 5.347 1.00 0.45 C ATOM 191 CD LYS 12 -0.394 0.807 6.378 1.00 0.45 C ATOM 192 CE LYS 12 -1.775 0.415 5.874 1.00 0.45 C ATOM 193 NZ LYS 12 -2.520 -0.403 6.870 1.00 0.45 N ATOM 207 N LYS 13 4.872 2.700 5.618 1.00 0.58 N ATOM 208 CA LYS 13 6.094 3.186 6.246 1.00 0.58 C ATOM 209 C LYS 13 6.807 4.196 5.355 1.00 0.58 C ATOM 210 O LYS 13 7.245 5.248 5.820 1.00 0.58 O ATOM 211 CB LYS 13 7.029 2.020 6.572 1.00 0.58 C ATOM 212 CG LYS 13 6.548 1.127 7.708 1.00 0.58 C ATOM 213 CD LYS 13 7.522 -0.014 7.964 1.00 0.58 C ATOM 214 CE LYS 13 7.065 -0.882 9.127 1.00 0.58 C ATOM 215 NZ LYS 13 7.994 -2.018 9.372 1.00 0.58 N ATOM 229 N LYS 14 6.922 3.868 4.072 1.00 0.64 N ATOM 230 CA LYS 14 7.658 4.703 3.131 1.00 0.64 C ATOM 231 C LYS 14 6.888 5.976 2.804 1.00 0.64 C ATOM 232 O LYS 14 7.474 7.051 2.672 1.00 0.64 O ATOM 233 CB LYS 14 7.959 3.926 1.849 1.00 0.64 C ATOM 234 CG LYS 14 9.033 2.857 1.998 1.00 0.64 C ATOM 235 CD LYS 14 9.270 2.124 0.686 1.00 0.64 C ATOM 236 CE LYS 14 10.486 1.213 0.772 1.00 0.64 C ATOM 237 NZ LYS 14 10.662 0.403 -0.464 1.00 0.64 N ATOM 251 N PHE 15 5.572 5.850 2.677 1.00 0.57 N ATOM 252 CA PHE 15 4.717 6.992 2.379 1.00 0.57 C ATOM 253 C PHE 15 3.943 7.439 3.611 1.00 0.57 C ATOM 254 O PHE 15 2.815 7.000 3.841 1.00 0.57 O ATOM 255 CB PHE 15 3.739 6.648 1.254 1.00 0.57 C ATOM 256 CG PHE 15 4.404 6.372 -0.064 1.00 0.57 C ATOM 257 CD1 PHE 15 4.788 5.084 -0.405 1.00 0.57 C ATOM 258 CD2 PHE 15 4.647 7.397 -0.965 1.00 0.57 C ATOM 259 CE1 PHE 15 5.401 4.827 -1.618 1.00 0.57 C ATOM 260 CE2 PHE 15 5.257 7.144 -2.178 1.00 0.57 C ATOM 261 CZ PHE 15 5.635 5.857 -2.505 1.00 0.57 C ATOM 271 N LYS 16 4.555 8.312 4.404 1.00 0.99 N ATOM 272 CA LYS 16 3.995 8.701 5.693 1.00 0.99 C ATOM 273 C LYS 16 2.728 9.529 5.514 1.00 0.99 C ATOM 274 O LYS 16 2.635 10.352 4.605 1.00 0.99 O ATOM 275 CB LYS 16 5.023 9.484 6.510 1.00 0.99 C ATOM 276 CG LYS 16 6.228 8.665 6.955 1.00 0.99 C ATOM 277 CD LYS 16 7.190 9.502 7.785 1.00 0.99 C ATOM 278 CE LYS 16 8.398 8.688 8.223 1.00 0.99 C ATOM 279 NZ LYS 16 9.356 9.499 9.023 1.00 0.99 N ATOM 293 N ASN 17 1.753 9.305 6.389 1.00 1.23 N ATOM 294 CA ASN 17 0.510 10.066 6.364 1.00 1.23 C ATOM 295 C ASN 17 -0.152 9.992 4.994 1.00 1.23 C ATOM 296 O ASN 17 -0.685 10.984 4.497 1.00 1.23 O ATOM 297 CB ASN 17 0.760 11.510 6.758 1.00 1.23 C ATOM 298 CG ASN 17 1.256 11.645 8.171 1.00 1.23 C ATOM 299 OD1 ASN 17 0.809 10.924 9.071 1.00 1.23 O ATOM 300 ND2 ASN 17 2.171 12.556 8.385 1.00 1.23 N ATOM 307 N CYS 18 -0.115 8.811 4.387 1.00 0.69 N ATOM 308 CA CYS 18 -0.705 8.606 3.070 1.00 0.69 C ATOM 309 C CYS 18 -1.714 7.465 3.089 1.00 0.69 C ATOM 310 O CYS 18 -1.726 6.651 4.011 1.00 0.69 O ATOM 311 CB CYS 18 0.379 8.304 2.034 1.00 0.69 C ATOM 312 SG CYS 18 1.564 9.649 1.792 1.00 0.69 S ATOM 318 N GLU 19 -2.559 7.412 2.064 1.00 0.31 N ATOM 319 CA GLU 19 -3.597 6.392 1.981 1.00 0.31 C ATOM 320 C GLU 19 -3.102 5.161 1.235 1.00 0.31 C ATOM 321 O GLU 19 -2.674 5.249 0.084 1.00 0.31 O ATOM 322 CB GLU 19 -4.841 6.954 1.288 1.00 0.31 C ATOM 323 CG GLU 19 -5.988 5.962 1.154 1.00 0.31 C ATOM 324 CD GLU 19 -7.180 6.539 0.442 1.00 0.31 C ATOM 325 OE1 GLU 19 -7.191 7.722 0.204 1.00 0.31 O ATOM 326 OE2 GLU 19 -8.081 5.794 0.137 1.00 0.31 O ATOM 333 N VAL 20 -3.161 4.011 1.897 1.00 0.28 N ATOM 334 CA VAL 20 -2.732 2.755 1.294 1.00 0.28 C ATOM 335 C VAL 20 -3.873 1.748 1.242 1.00 0.28 C ATOM 336 O VAL 20 -4.560 1.523 2.239 1.00 0.28 O ATOM 337 CB VAL 20 -1.557 2.154 2.089 1.00 0.28 C ATOM 338 CG1 VAL 20 -1.141 0.817 1.495 1.00 0.28 C ATOM 339 CG2 VAL 20 -0.388 3.126 2.100 1.00 0.28 C ATOM 349 N ARG 21 -4.071 1.145 0.075 1.00 0.46 N ATOM 350 CA ARG 21 -5.187 0.230 -0.134 1.00 0.46 C ATOM 351 C ARG 21 -4.695 -1.163 -0.505 1.00 0.46 C ATOM 352 O ARG 21 -3.727 -1.311 -1.252 1.00 0.46 O ATOM 353 CB ARG 21 -6.106 0.749 -1.231 1.00 0.46 C ATOM 354 CG ARG 21 -6.797 2.066 -0.916 1.00 0.46 C ATOM 355 CD ARG 21 -7.700 2.489 -2.017 1.00 0.46 C ATOM 356 NE ARG 21 -8.334 3.767 -1.737 1.00 0.46 N ATOM 357 CZ ARG 21 -9.269 4.345 -2.516 1.00 0.46 C ATOM 358 NH1 ARG 21 -9.668 3.745 -3.617 1.00 0.46 N ATOM 359 NH2 ARG 21 -9.787 5.511 -2.174 1.00 0.46 N ATOM 373 N CYS 22 -5.366 -2.182 0.020 1.00 0.43 N ATOM 374 CA CYS 22 -4.984 -3.566 -0.237 1.00 0.43 C ATOM 375 C CYS 22 -5.943 -4.229 -1.216 1.00 0.43 C ATOM 376 O CYS 22 -7.108 -4.466 -0.896 1.00 0.43 O ATOM 377 CB CYS 22 -4.958 -4.368 1.065 1.00 0.43 C ATOM 378 SG CYS 22 -4.508 -6.106 0.853 1.00 0.43 S ATOM 384 N ASP 23 -5.447 -4.527 -2.413 1.00 0.36 N ATOM 385 CA ASP 23 -6.252 -5.186 -3.434 1.00 0.36 C ATOM 386 C ASP 23 -5.992 -6.687 -3.454 1.00 0.36 C ATOM 387 O ASP 23 -5.190 -7.177 -4.251 1.00 0.36 O ATOM 388 CB ASP 23 -5.960 -4.592 -4.814 1.00 0.36 C ATOM 389 CG ASP 23 -6.823 -5.196 -5.914 1.00 0.36 C ATOM 390 OD1 ASP 23 -7.417 -6.222 -5.679 1.00 0.36 O ATOM 391 OD2 ASP 23 -6.881 -4.625 -6.976 1.00 0.36 O ATOM 396 N GLU 24 -6.675 -7.414 -2.576 1.00 0.32 N ATOM 397 CA GLU 24 -6.418 -8.837 -2.396 1.00 0.32 C ATOM 398 C GLU 24 -6.824 -9.630 -3.631 1.00 0.32 C ATOM 399 O GLU 24 -6.295 -10.711 -3.890 1.00 0.32 O ATOM 400 CB GLU 24 -7.169 -9.363 -1.171 1.00 0.32 C ATOM 401 CG GLU 24 -6.649 -8.838 0.159 1.00 0.32 C ATOM 402 CD GLU 24 -7.365 -9.427 1.342 1.00 0.32 C ATOM 403 OE1 GLU 24 -8.393 -10.031 1.149 1.00 0.32 O ATOM 404 OE2 GLU 24 -6.883 -9.275 2.439 1.00 0.32 O ATOM 411 N SER 25 -7.769 -9.088 -4.393 1.00 0.73 N ATOM 412 CA SER 25 -8.273 -9.761 -5.585 1.00 0.73 C ATOM 413 C SER 25 -7.208 -9.826 -6.672 1.00 0.73 C ATOM 414 O SER 25 -7.041 -10.853 -7.329 1.00 0.73 O ATOM 415 CB SER 25 -9.501 -9.043 -6.110 1.00 0.73 C ATOM 416 OG SER 25 -10.566 -9.143 -5.205 1.00 0.73 O ATOM 422 N ASN 26 -6.491 -8.723 -6.858 1.00 0.62 N ATOM 423 CA ASN 26 -5.441 -8.653 -7.867 1.00 0.62 C ATOM 424 C ASN 26 -4.059 -8.753 -7.234 1.00 0.62 C ATOM 425 O ASN 26 -3.043 -8.693 -7.925 1.00 0.62 O ATOM 426 CB ASN 26 -5.565 -7.377 -8.679 1.00 0.62 C ATOM 427 CG ASN 26 -6.821 -7.337 -9.504 1.00 0.62 C ATOM 428 OD1 ASN 26 -7.057 -8.215 -10.341 1.00 0.62 O ATOM 429 ND2 ASN 26 -7.632 -6.333 -9.285 1.00 0.62 N ATOM 436 N HIS 27 -4.030 -8.905 -5.914 1.00 0.46 N ATOM 437 CA HIS 27 -2.772 -9.021 -5.184 1.00 0.46 C ATOM 438 C HIS 27 -1.871 -7.821 -5.445 1.00 0.46 C ATOM 439 O HIS 27 -0.664 -7.969 -5.634 1.00 0.46 O ATOM 440 CB HIS 27 -2.040 -10.311 -5.571 1.00 0.46 C ATOM 441 CG HIS 27 -2.805 -11.556 -5.249 1.00 0.46 C ATOM 442 ND1 HIS 27 -2.950 -12.029 -3.962 1.00 0.46 N ATOM 443 CD2 HIS 27 -3.468 -12.426 -6.047 1.00 0.46 C ATOM 444 CE1 HIS 27 -3.669 -13.138 -3.983 1.00 0.46 C ATOM 445 NE2 HIS 27 -3.994 -13.401 -5.234 1.00 0.46 N ATOM 453 N CYS 28 -2.465 -6.633 -5.455 1.00 0.42 N ATOM 454 CA CYS 28 -1.723 -5.407 -5.725 1.00 0.42 C ATOM 455 C CYS 28 -1.866 -4.411 -4.582 1.00 0.42 C ATOM 456 O CYS 28 -2.796 -4.502 -3.781 1.00 0.42 O ATOM 457 CB CYS 28 -2.211 -4.760 -7.022 1.00 0.42 C ATOM 458 SG CYS 28 -1.972 -5.782 -8.494 1.00 0.42 S ATOM 464 N VAL 29 -0.940 -3.462 -4.510 1.00 0.35 N ATOM 465 CA VAL 29 -1.004 -2.401 -3.512 1.00 0.35 C ATOM 466 C VAL 29 -1.027 -1.028 -4.169 1.00 0.35 C ATOM 467 O VAL 29 -0.250 -0.754 -5.084 1.00 0.35 O ATOM 468 CB VAL 29 0.203 -2.491 -2.559 1.00 0.35 C ATOM 469 CG1 VAL 29 0.153 -1.371 -1.530 1.00 0.35 C ATOM 470 CG2 VAL 29 0.222 -3.850 -1.874 1.00 0.35 C ATOM 480 N GLU 30 -1.922 -0.166 -3.697 1.00 0.57 N ATOM 481 CA GLU 30 -1.994 1.207 -4.183 1.00 0.57 C ATOM 482 C GLU 30 -1.809 2.203 -3.045 1.00 0.57 C ATOM 483 O GLU 30 -2.288 1.986 -1.932 1.00 0.57 O ATOM 484 CB GLU 30 -3.333 1.457 -4.879 1.00 0.57 C ATOM 485 CG GLU 30 -3.557 0.617 -6.128 1.00 0.57 C ATOM 486 CD GLU 30 -4.865 0.918 -6.808 1.00 0.57 C ATOM 487 OE1 GLU 30 -5.624 1.691 -6.278 1.00 0.57 O ATOM 488 OE2 GLU 30 -5.103 0.374 -7.861 1.00 0.57 O ATOM 495 N VAL 31 -1.110 3.296 -3.331 1.00 0.26 N ATOM 496 CA VAL 31 -0.917 4.360 -2.353 1.00 0.26 C ATOM 497 C VAL 31 -1.078 5.733 -2.993 1.00 0.26 C ATOM 498 O VAL 31 -0.578 5.979 -4.092 1.00 0.26 O ATOM 499 CB VAL 31 0.482 4.255 -1.717 1.00 0.26 C ATOM 500 CG1 VAL 31 1.560 4.322 -2.789 1.00 0.26 C ATOM 501 CG2 VAL 31 0.670 5.363 -0.693 1.00 0.26 C ATOM 511 N ARG 32 -1.779 6.625 -2.301 1.00 0.73 N ATOM 512 CA ARG 32 -1.918 8.005 -2.750 1.00 0.73 C ATOM 513 C ARG 32 -1.131 8.956 -1.858 1.00 0.73 C ATOM 514 O ARG 32 -1.378 9.043 -0.655 1.00 0.73 O ATOM 515 CB ARG 32 -3.382 8.419 -2.761 1.00 0.73 C ATOM 516 CG ARG 32 -3.637 9.853 -3.200 1.00 0.73 C ATOM 517 CD ARG 32 -5.090 10.147 -3.295 1.00 0.73 C ATOM 518 NE ARG 32 -5.768 9.946 -2.025 1.00 0.73 N ATOM 519 CZ ARG 32 -5.887 10.884 -1.065 1.00 0.73 C ATOM 520 NH1 ARG 32 -5.368 12.079 -1.246 1.00 0.73 N ATOM 521 NH2 ARG 32 -6.524 10.603 0.059 1.00 0.73 N ATOM 535 N CYS 33 -0.181 9.668 -2.455 1.00 0.84 N ATOM 536 CA CYS 33 0.599 10.666 -1.731 1.00 0.84 C ATOM 537 C CYS 33 0.372 12.061 -2.298 1.00 0.84 C ATOM 538 O CYS 33 0.888 12.399 -3.363 1.00 0.84 O ATOM 539 CB CYS 33 2.089 10.332 -1.792 1.00 0.84 C ATOM 540 SG CYS 33 3.145 11.499 -0.900 1.00 0.84 S ATOM 546 N SER 34 -0.403 12.867 -1.580 1.00 0.87 N ATOM 547 CA SER 34 -0.898 14.129 -2.115 1.00 0.87 C ATOM 548 C SER 34 -1.722 13.908 -3.376 1.00 0.87 C ATOM 549 O SER 34 -2.753 13.236 -3.345 1.00 0.87 O ATOM 550 CB SER 34 0.262 15.059 -2.415 1.00 0.87 C ATOM 551 OG SER 34 -0.195 16.344 -2.739 1.00 0.87 O ATOM 557 N ASP 35 -1.262 14.477 -4.485 1.00 1.30 N ATOM 558 CA ASP 35 -1.981 14.384 -5.750 1.00 1.30 C ATOM 559 C ASP 35 -1.306 13.401 -6.697 1.00 1.30 C ATOM 560 O ASP 35 -1.610 13.365 -7.890 1.00 1.30 O ATOM 561 CB ASP 35 -2.077 15.759 -6.414 1.00 1.30 C ATOM 562 CG ASP 35 -2.929 16.742 -5.623 1.00 1.30 C ATOM 563 OD1 ASP 35 -3.830 16.307 -4.944 1.00 1.30 O ATOM 564 OD2 ASP 35 -2.671 17.920 -5.703 1.00 1.30 O ATOM 569 N THR 36 -0.389 12.605 -6.160 1.00 0.55 N ATOM 570 CA THR 36 0.314 11.602 -6.952 1.00 0.55 C ATOM 571 C THR 36 0.041 10.197 -6.430 1.00 0.55 C ATOM 572 O THR 36 0.157 9.936 -5.233 1.00 0.55 O ATOM 573 CB THR 36 1.831 11.865 -6.959 1.00 0.55 C ATOM 574 OG1 THR 36 2.092 13.159 -7.517 1.00 0.55 O ATOM 575 CG2 THR 36 2.551 10.808 -7.782 1.00 0.55 C ATOM 583 N LYS 37 -0.322 9.295 -7.335 1.00 0.35 N ATOM 584 CA LYS 37 -0.635 7.920 -6.964 1.00 0.35 C ATOM 585 C LYS 37 0.432 6.958 -7.469 1.00 0.35 C ATOM 586 O LYS 37 0.950 7.113 -8.575 1.00 0.35 O ATOM 587 CB LYS 37 -2.006 7.517 -7.507 1.00 0.35 C ATOM 588 CG LYS 37 -2.461 6.123 -7.097 1.00 0.35 C ATOM 589 CD LYS 37 -3.878 5.841 -7.576 1.00 0.35 C ATOM 590 CE LYS 37 -4.353 4.468 -7.121 1.00 0.35 C ATOM 591 NZ LYS 37 -5.744 4.184 -7.568 1.00 0.35 N ATOM 605 N TYR 38 0.758 5.962 -6.651 1.00 0.40 N ATOM 606 CA TYR 38 1.709 4.929 -7.043 1.00 0.40 C ATOM 607 C TYR 38 1.074 3.545 -6.989 1.00 0.40 C ATOM 608 O TYR 38 0.156 3.303 -6.204 1.00 0.40 O ATOM 609 CB TYR 38 2.951 4.977 -6.150 1.00 0.40 C ATOM 610 CG TYR 38 3.640 6.323 -6.136 1.00 0.40 C ATOM 611 CD1 TYR 38 3.243 7.297 -5.231 1.00 0.40 C ATOM 612 CD2 TYR 38 4.671 6.585 -7.027 1.00 0.40 C ATOM 613 CE1 TYR 38 3.872 8.526 -5.218 1.00 0.40 C ATOM 614 CE2 TYR 38 5.300 7.814 -7.014 1.00 0.40 C ATOM 615 CZ TYR 38 4.904 8.782 -6.115 1.00 0.40 C ATOM 616 OH TYR 38 5.531 10.007 -6.102 1.00 0.40 O ATOM 626 N THR 39 1.566 2.640 -7.827 1.00 0.55 N ATOM 627 CA THR 39 1.118 1.253 -7.808 1.00 0.55 C ATOM 628 C THR 39 2.279 0.302 -7.545 1.00 0.55 C ATOM 629 O THR 39 3.336 0.412 -8.167 1.00 0.55 O ATOM 630 CB THR 39 0.428 0.874 -9.132 1.00 0.55 C ATOM 631 OG1 THR 39 -0.714 1.716 -9.336 1.00 0.55 O ATOM 632 CG2 THR 39 -0.016 -0.580 -9.106 1.00 0.55 C ATOM 640 N LEU 40 2.076 -0.631 -6.623 1.00 0.37 N ATOM 641 CA LEU 40 3.093 -1.626 -6.302 1.00 0.37 C ATOM 642 C LEU 40 2.582 -3.038 -6.556 1.00 0.37 C ATOM 643 O LEU 40 1.525 -3.425 -6.056 1.00 0.37 O ATOM 644 CB LEU 40 3.526 -1.488 -4.837 1.00 0.37 C ATOM 645 CG LEU 40 4.484 -2.570 -4.322 1.00 0.37 C ATOM 646 CD1 LEU 40 5.824 -2.442 -5.034 1.00 0.37 C ATOM 647 CD2 LEU 40 4.648 -2.428 -2.816 1.00 0.37 C ATOM 659 N CYS 41 3.338 -3.805 -7.335 1.00 0.59 N ATOM 660 CA CYS 41 2.979 -5.187 -7.629 1.00 0.59 C ATOM 661 C CYS 41 4.140 -6.131 -7.341 1.00 0.59 C ATOM 662 O CYS 41 4.364 -6.479 -6.215 1.00 0.59 O ATOM 663 OXT CYS 41 4.831 -6.525 -8.239 1.00 0.59 O ATOM 664 CB CYS 41 2.560 -5.335 -9.092 1.00 0.59 C ATOM 665 SG CYS 41 2.072 -7.014 -9.555 1.00 0.59 S TER END