####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS335_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.73 1.73 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.73 1.73 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 14 - 33 0.98 1.94 LCS_AVERAGE: 39.92 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 4 41 41 4 12 22 31 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 13 41 41 7 11 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 13 41 41 7 11 14 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 13 41 41 7 11 14 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 13 41 41 7 11 24 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 13 41 41 7 11 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 13 41 41 7 11 14 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 13 41 41 7 11 14 29 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 13 41 41 6 12 24 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 13 41 41 6 11 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 13 41 41 5 11 14 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 13 41 41 6 11 13 24 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 13 41 41 5 13 22 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 20 41 41 5 15 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 20 41 41 6 15 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 20 41 41 6 16 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 20 41 41 6 16 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 20 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 20 41 41 7 18 25 31 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 20 41 41 5 16 22 30 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 20 41 41 6 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 20 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 20 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 20 41 41 3 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 20 41 41 4 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 20 41 41 5 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 20 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 20 41 41 5 18 24 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 20 41 41 5 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 20 41 41 4 17 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 20 41 41 6 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 20 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 20 41 41 4 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 15 41 41 3 6 17 29 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 15 41 41 3 16 23 31 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 15 41 41 5 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 15 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 15 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 15 41 41 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 15 41 41 5 16 23 30 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 2 9 15 23 29 35 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 79.97 ( 39.92 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 18 25 32 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 17.07 43.90 60.98 78.05 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.24 0.71 1.06 1.38 1.58 1.62 1.62 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 GDT RMS_ALL_AT 4.90 2.27 1.79 1.75 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 1.73 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.181 0 0.057 0.760 4.729 27.273 29.091 2.704 LGA Q 2 Q 2 1.456 0 0.160 1.396 3.663 61.818 53.737 0.792 LGA E 3 E 3 2.242 0 0.012 1.498 7.670 41.364 21.414 6.496 LGA T 4 T 4 2.360 0 0.059 1.021 3.847 38.182 30.390 3.583 LGA R 5 R 5 1.684 0 0.045 1.378 7.987 50.909 31.901 7.987 LGA K 6 K 6 1.373 0 0.019 1.263 7.354 54.545 33.737 7.354 LGA K 7 K 7 2.266 0 0.053 0.684 4.527 38.182 23.838 3.946 LGA C 8 C 8 2.638 0 0.016 0.758 5.657 35.455 28.182 5.657 LGA T 9 T 9 1.809 0 0.031 0.096 2.054 47.727 51.169 1.626 LGA E 10 E 10 1.040 0 0.024 0.912 5.736 65.455 41.212 5.736 LGA M 11 M 11 2.339 0 0.062 1.091 3.771 41.364 28.864 3.283 LGA K 12 K 12 2.937 0 0.023 0.744 3.277 25.000 29.091 2.644 LGA K 13 K 13 1.902 0 0.129 0.644 1.937 50.909 58.990 1.087 LGA K 14 K 14 1.322 0 0.129 0.658 2.882 61.818 61.414 2.882 LGA F 15 F 15 1.417 0 0.098 0.354 2.729 65.455 54.876 2.013 LGA K 16 K 16 0.635 0 0.013 0.942 3.527 90.909 65.657 3.527 LGA N 17 N 17 0.366 0 0.199 0.475 1.618 90.909 87.045 1.618 LGA C 18 C 18 1.095 0 0.026 0.030 1.520 65.909 68.485 0.985 LGA E 19 E 19 1.620 0 0.238 0.764 4.150 58.182 36.566 3.932 LGA V 20 V 20 2.393 0 0.132 1.075 3.856 35.455 29.870 3.491 LGA R 21 R 21 1.344 0 0.061 1.321 3.181 61.818 53.554 2.999 LGA C 22 C 22 0.661 0 0.107 0.909 2.994 86.364 75.758 2.994 LGA D 23 D 23 0.700 0 0.360 1.140 3.555 64.091 51.364 2.556 LGA E 24 E 24 1.446 0 0.053 0.637 5.197 58.182 35.354 5.197 LGA S 25 S 25 1.468 0 0.025 0.098 1.844 65.455 60.606 1.844 LGA N 26 N 26 0.980 0 0.172 1.166 3.986 65.909 55.682 3.986 LGA H 27 H 27 0.708 0 0.071 0.576 3.793 81.818 57.636 2.188 LGA C 28 C 28 1.573 0 0.155 0.753 3.310 58.182 50.303 3.310 LGA V 29 V 29 1.442 0 0.073 0.107 2.168 61.818 53.506 2.168 LGA E 30 E 30 1.489 0 0.064 0.699 2.608 61.818 51.717 2.001 LGA V 31 V 31 1.312 0 0.100 0.155 1.403 65.455 65.455 1.346 LGA R 32 R 32 1.128 0 0.090 1.151 3.500 73.636 61.818 3.500 LGA C 33 C 33 0.920 0 0.489 0.562 3.445 58.182 66.061 0.731 LGA S 34 S 34 2.237 0 0.540 0.813 5.109 29.091 28.788 3.180 LGA D 35 D 35 1.739 0 0.202 1.032 4.189 51.364 42.273 4.189 LGA T 36 T 36 1.053 0 0.224 1.128 2.684 65.909 58.182 2.684 LGA K 37 K 37 0.594 0 0.077 1.249 2.532 74.091 63.434 2.532 LGA Y 38 Y 38 1.212 0 0.018 1.320 4.351 77.727 51.515 4.351 LGA T 39 T 39 0.769 0 0.115 0.110 2.517 60.455 62.597 1.300 LGA L 40 L 40 2.329 0 0.169 1.058 4.581 48.182 30.455 4.581 LGA C 41 C 41 4.027 0 0.427 1.037 6.590 18.182 13.247 6.590 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.728 1.797 2.504 56.940 47.679 27.406 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.73 80.488 90.511 2.243 LGA_LOCAL RMSD: 1.728 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.728 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.728 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.826182 * X + -0.512876 * Y + 0.233197 * Z + -1.084435 Y_new = -0.059663 * X + -0.331936 * Y + -0.941413 * Z + -1.499263 Z_new = 0.560235 * X + -0.791692 * Y + 0.243640 * Z + 8.324671 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.069502 -0.594669 -1.272249 [DEG: -175.8695 -34.0720 -72.8945 ] ZXZ: 0.242821 1.324680 2.525756 [DEG: 13.9126 75.8986 144.7152 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS335_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.73 90.511 1.73 REMARK ---------------------------------------------------------- MOLECULE T0955TS335_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 -3.399 -13.781 -1.158 1.00 0.40 N ATOM 2 CA SER 1 -2.202 -14.309 -0.517 1.00 0.40 C ATOM 3 C SER 1 -1.588 -13.352 0.480 1.00 0.40 C ATOM 4 O SER 1 -1.275 -12.186 0.181 1.00 0.40 O ATOM 5 CB SER 1 -1.130 -14.685 -1.519 1.00 0.40 C ATOM 6 OG SER 1 0.076 -15.057 -0.847 1.00 0.40 O ATOM 14 N GLN 2 -1.270 -13.906 1.639 1.00 0.96 N ATOM 15 CA GLN 2 -0.640 -13.161 2.712 1.00 0.96 C ATOM 16 C GLN 2 0.706 -12.592 2.281 1.00 0.96 C ATOM 17 O GLN 2 1.163 -11.598 2.845 1.00 0.96 O ATOM 18 CB GLN 2 -0.476 -14.044 3.945 1.00 0.96 C ATOM 19 CG GLN 2 -1.799 -14.416 4.588 1.00 0.96 C ATOM 20 CD GLN 2 -2.524 -13.186 5.100 1.00 0.96 C ATOM 21 OE1 GLN 2 -1.969 -12.415 5.899 1.00 0.96 O ATOM 22 NE2 GLN 2 -3.757 -12.986 4.649 1.00 0.96 N ATOM 31 N GLU 3 1.353 -13.211 1.291 1.00 0.05 N ATOM 32 CA GLU 3 2.648 -12.710 0.865 1.00 0.05 C ATOM 33 C GLU 3 2.492 -11.333 0.223 1.00 0.05 C ATOM 34 O GLU 3 3.398 -10.494 0.308 1.00 0.05 O ATOM 35 CB GLU 3 3.335 -13.699 -0.074 1.00 0.05 C ATOM 36 CG GLU 3 3.750 -15.012 0.622 1.00 0.05 C ATOM 37 CD GLU 3 4.736 -14.807 1.776 1.00 0.05 C ATOM 38 OE1 GLU 3 5.747 -14.183 1.575 1.00 0.05 O ATOM 39 OE2 GLU 3 4.452 -15.270 2.870 1.00 0.05 O ATOM 46 N THR 4 1.351 -11.084 -0.436 1.00 0.33 N ATOM 47 CA THR 4 1.191 -9.795 -1.070 1.00 0.33 C ATOM 48 C THR 4 0.842 -8.813 0.025 1.00 0.33 C ATOM 49 O THR 4 1.258 -7.659 -0.018 1.00 0.33 O ATOM 50 CB THR 4 0.092 -9.809 -2.154 1.00 0.33 C ATOM 51 OG1 THR 4 -1.179 -10.133 -1.576 1.00 0.33 O ATOM 52 CG2 THR 4 0.435 -10.850 -3.191 1.00 0.33 C ATOM 60 N ARG 5 0.130 -9.280 1.059 1.00 0.86 N ATOM 61 CA ARG 5 -0.215 -8.391 2.165 1.00 0.86 C ATOM 62 C ARG 5 1.072 -7.895 2.825 1.00 0.86 C ATOM 63 O ARG 5 1.204 -6.710 3.143 1.00 0.86 O ATOM 64 CB ARG 5 -1.130 -9.042 3.199 1.00 0.86 C ATOM 65 CG ARG 5 -1.609 -8.051 4.294 1.00 0.86 C ATOM 66 CD ARG 5 -2.590 -8.642 5.268 1.00 0.86 C ATOM 67 NE ARG 5 -2.006 -9.674 6.098 1.00 0.86 N ATOM 68 CZ ARG 5 -1.258 -9.474 7.194 1.00 0.86 C ATOM 69 NH1 ARG 5 -0.985 -8.262 7.633 1.00 0.86 N ATOM 70 NH2 ARG 5 -0.809 -10.538 7.817 1.00 0.86 N ATOM 84 N LYS 6 2.039 -8.803 3.011 1.00 0.10 N ATOM 85 CA LYS 6 3.317 -8.436 3.620 1.00 0.10 C ATOM 86 C LYS 6 4.065 -7.400 2.774 1.00 0.10 C ATOM 87 O LYS 6 4.596 -6.416 3.305 1.00 0.10 O ATOM 88 CB LYS 6 4.199 -9.677 3.756 1.00 0.10 C ATOM 89 CG LYS 6 3.763 -10.700 4.797 1.00 0.10 C ATOM 90 CD LYS 6 4.669 -11.930 4.730 1.00 0.10 C ATOM 91 CE LYS 6 4.235 -13.026 5.686 1.00 0.10 C ATOM 92 NZ LYS 6 5.059 -14.266 5.505 1.00 0.10 N ATOM 106 N LYS 7 4.065 -7.578 1.443 1.00 0.83 N ATOM 107 CA LYS 7 4.743 -6.611 0.580 1.00 0.83 C ATOM 108 C LYS 7 4.030 -5.273 0.616 1.00 0.83 C ATOM 109 O LYS 7 4.657 -4.212 0.705 1.00 0.83 O ATOM 110 CB LYS 7 4.762 -7.078 -0.871 1.00 0.83 C ATOM 111 CG LYS 7 5.643 -8.252 -1.195 1.00 0.83 C ATOM 112 CD LYS 7 5.507 -8.565 -2.671 1.00 0.83 C ATOM 113 CE LYS 7 6.345 -9.721 -3.113 1.00 0.83 C ATOM 114 NZ LYS 7 6.159 -9.978 -4.566 1.00 0.83 N ATOM 128 N CYS 8 2.701 -5.338 0.595 1.00 0.47 N ATOM 129 CA CYS 8 1.869 -4.158 0.599 1.00 0.47 C ATOM 130 C CYS 8 2.061 -3.365 1.868 1.00 0.47 C ATOM 131 O CYS 8 2.231 -2.148 1.825 1.00 0.47 O ATOM 132 CB CYS 8 0.395 -4.569 0.525 1.00 0.47 C ATOM 133 SG CYS 8 -0.161 -5.235 -1.070 1.00 0.47 S ATOM 139 N THR 9 2.112 -4.065 2.994 1.00 0.55 N ATOM 140 CA THR 9 2.233 -3.436 4.288 1.00 0.55 C ATOM 141 C THR 9 3.556 -2.716 4.459 1.00 0.55 C ATOM 142 O THR 9 3.590 -1.552 4.870 1.00 0.55 O ATOM 143 CB THR 9 2.097 -4.488 5.397 1.00 0.55 C ATOM 144 OG1 THR 9 0.810 -5.116 5.298 1.00 0.55 O ATOM 145 CG2 THR 9 2.248 -3.833 6.756 1.00 0.55 C ATOM 153 N GLU 10 4.658 -3.374 4.108 1.00 0.31 N ATOM 154 CA GLU 10 5.941 -2.732 4.324 1.00 0.31 C ATOM 155 C GLU 10 6.097 -1.512 3.422 1.00 0.31 C ATOM 156 O GLU 10 6.616 -0.478 3.845 1.00 0.31 O ATOM 157 CB GLU 10 7.084 -3.720 4.089 1.00 0.31 C ATOM 158 CG GLU 10 8.473 -3.174 4.441 1.00 0.31 C ATOM 159 CD GLU 10 8.627 -2.858 5.935 1.00 0.31 C ATOM 160 OE1 GLU 10 7.841 -3.358 6.724 1.00 0.31 O ATOM 161 OE2 GLU 10 9.517 -2.122 6.283 1.00 0.31 O ATOM 168 N MET 11 5.637 -1.610 2.179 1.00 0.14 N ATOM 169 CA MET 11 5.736 -0.480 1.274 1.00 0.14 C ATOM 170 C MET 11 4.787 0.648 1.687 1.00 0.14 C ATOM 171 O MET 11 5.146 1.820 1.631 1.00 0.14 O ATOM 172 CB MET 11 5.474 -0.959 -0.143 1.00 0.14 C ATOM 173 CG MET 11 6.559 -1.894 -0.655 1.00 0.14 C ATOM 174 SD MET 11 6.191 -2.619 -2.249 1.00 0.14 S ATOM 175 CE MET 11 6.389 -1.238 -3.355 1.00 0.14 C ATOM 185 N LYS 12 3.580 0.289 2.155 1.00 0.45 N ATOM 186 CA LYS 12 2.550 1.241 2.582 1.00 0.45 C ATOM 187 C LYS 12 3.068 2.174 3.666 1.00 0.45 C ATOM 188 O LYS 12 2.716 3.352 3.695 1.00 0.45 O ATOM 189 CB LYS 12 1.308 0.503 3.075 1.00 0.45 C ATOM 190 CG LYS 12 0.140 1.376 3.455 1.00 0.45 C ATOM 191 CD LYS 12 -1.022 0.520 3.966 1.00 0.45 C ATOM 192 CE LYS 12 -0.713 0.001 5.376 1.00 0.45 C ATOM 193 NZ LYS 12 -1.876 -0.701 5.995 1.00 0.45 N ATOM 207 N LYS 13 3.951 1.669 4.531 1.00 0.95 N ATOM 208 CA LYS 13 4.542 2.456 5.618 1.00 0.95 C ATOM 209 C LYS 13 5.288 3.705 5.121 1.00 0.95 C ATOM 210 O LYS 13 5.477 4.656 5.881 1.00 0.95 O ATOM 211 CB LYS 13 5.550 1.609 6.399 1.00 0.95 C ATOM 212 CG LYS 13 4.980 0.491 7.246 1.00 0.95 C ATOM 213 CD LYS 13 6.116 -0.318 7.861 1.00 0.95 C ATOM 214 CE LYS 13 5.618 -1.486 8.685 1.00 0.95 C ATOM 215 NZ LYS 13 6.754 -2.324 9.178 1.00 0.95 N ATOM 229 N LYS 14 5.726 3.699 3.857 1.00 0.07 N ATOM 230 CA LYS 14 6.472 4.811 3.276 1.00 0.07 C ATOM 231 C LYS 14 5.533 5.903 2.761 1.00 0.07 C ATOM 232 O LYS 14 5.970 6.995 2.390 1.00 0.07 O ATOM 233 CB LYS 14 7.335 4.304 2.123 1.00 0.07 C ATOM 234 CG LYS 14 8.415 3.322 2.536 1.00 0.07 C ATOM 235 CD LYS 14 9.218 2.852 1.337 1.00 0.07 C ATOM 236 CE LYS 14 10.302 1.866 1.752 1.00 0.07 C ATOM 237 NZ LYS 14 11.103 1.397 0.585 1.00 0.07 N ATOM 251 N PHE 15 4.239 5.597 2.735 1.00 0.32 N ATOM 252 CA PHE 15 3.199 6.474 2.227 1.00 0.32 C ATOM 253 C PHE 15 2.222 6.790 3.346 1.00 0.32 C ATOM 254 O PHE 15 1.024 6.956 3.136 1.00 0.32 O ATOM 255 CB PHE 15 2.528 5.801 1.045 1.00 0.32 C ATOM 256 CG PHE 15 3.521 5.533 -0.007 1.00 0.32 C ATOM 257 CD1 PHE 15 4.105 4.310 -0.076 1.00 0.32 C ATOM 258 CD2 PHE 15 3.906 6.499 -0.902 1.00 0.32 C ATOM 259 CE1 PHE 15 5.055 4.028 -1.017 1.00 0.32 C ATOM 260 CE2 PHE 15 4.853 6.229 -1.850 1.00 0.32 C ATOM 261 CZ PHE 15 5.430 4.991 -1.913 1.00 0.32 C ATOM 271 N LYS 16 2.750 6.872 4.560 1.00 0.73 N ATOM 272 CA LYS 16 1.975 7.157 5.767 1.00 0.73 C ATOM 273 C LYS 16 1.254 8.512 5.739 1.00 0.73 C ATOM 274 O LYS 16 0.296 8.724 6.479 1.00 0.73 O ATOM 275 CB LYS 16 2.892 7.056 6.983 1.00 0.73 C ATOM 276 CG LYS 16 3.975 8.123 7.053 1.00 0.73 C ATOM 277 CD LYS 16 4.889 7.885 8.243 1.00 0.73 C ATOM 278 CE LYS 16 5.964 8.951 8.348 1.00 0.73 C ATOM 279 NZ LYS 16 6.889 8.687 9.483 1.00 0.73 N ATOM 293 N ASN 17 1.723 9.423 4.885 1.00 0.97 N ATOM 294 CA ASN 17 1.134 10.747 4.739 1.00 0.97 C ATOM 295 C ASN 17 0.213 10.814 3.514 1.00 0.97 C ATOM 296 O ASN 17 -0.209 11.898 3.103 1.00 0.97 O ATOM 297 CB ASN 17 2.227 11.792 4.633 1.00 0.97 C ATOM 298 CG ASN 17 3.024 11.937 5.908 1.00 0.97 C ATOM 299 OD1 ASN 17 2.481 11.884 7.016 1.00 0.97 O ATOM 300 ND2 ASN 17 4.313 12.124 5.765 1.00 0.97 N ATOM 307 N CYS 18 -0.084 9.654 2.929 1.00 0.00 N ATOM 308 CA CYS 18 -0.920 9.557 1.740 1.00 0.00 C ATOM 309 C CYS 18 -2.202 8.793 2.043 1.00 0.00 C ATOM 310 O CYS 18 -2.284 8.069 3.036 1.00 0.00 O ATOM 311 CB CYS 18 -0.163 8.842 0.627 1.00 0.00 C ATOM 312 SG CYS 18 1.393 9.651 0.167 1.00 0.00 S ATOM 317 N GLU 19 -3.224 8.950 1.215 1.00 0.70 N ATOM 318 CA GLU 19 -4.414 8.144 1.445 1.00 0.70 C ATOM 319 C GLU 19 -4.113 6.782 0.859 1.00 0.70 C ATOM 320 O GLU 19 -3.688 6.696 -0.293 1.00 0.70 O ATOM 321 CB GLU 19 -5.649 8.751 0.776 1.00 0.70 C ATOM 322 CG GLU 19 -6.062 10.111 1.305 1.00 0.70 C ATOM 323 CD GLU 19 -7.290 10.694 0.611 1.00 0.70 C ATOM 324 OE1 GLU 19 -7.844 10.061 -0.279 1.00 0.70 O ATOM 325 OE2 GLU 19 -7.673 11.781 0.977 1.00 0.70 O ATOM 332 N VAL 20 -4.285 5.720 1.633 1.00 0.85 N ATOM 333 CA VAL 20 -3.943 4.412 1.097 1.00 0.85 C ATOM 334 C VAL 20 -5.048 3.380 1.258 1.00 0.85 C ATOM 335 O VAL 20 -5.799 3.399 2.237 1.00 0.85 O ATOM 336 CB VAL 20 -2.657 3.893 1.779 1.00 0.85 C ATOM 337 CG1 VAL 20 -1.459 4.806 1.468 1.00 0.85 C ATOM 338 CG2 VAL 20 -2.878 3.847 3.266 1.00 0.85 C ATOM 348 N ARG 21 -5.093 2.438 0.316 1.00 0.01 N ATOM 349 CA ARG 21 -6.034 1.323 0.357 1.00 0.01 C ATOM 350 C ARG 21 -5.354 0.005 0.016 1.00 0.01 C ATOM 351 O ARG 21 -4.869 -0.178 -1.100 1.00 0.01 O ATOM 352 CB ARG 21 -7.143 1.547 -0.664 1.00 0.01 C ATOM 353 CG ARG 21 -8.222 0.473 -0.733 1.00 0.01 C ATOM 354 CD ARG 21 -9.297 0.843 -1.725 1.00 0.01 C ATOM 355 NE ARG 21 -8.778 0.881 -3.116 1.00 0.01 N ATOM 356 CZ ARG 21 -8.741 -0.171 -3.962 1.00 0.01 C ATOM 357 NH1 ARG 21 -9.194 -1.360 -3.605 1.00 0.01 N ATOM 358 NH2 ARG 21 -8.234 0.025 -5.155 1.00 0.01 N ATOM 372 N CYS 22 -5.337 -0.937 0.953 1.00 0.98 N ATOM 373 CA CYS 22 -4.685 -2.216 0.672 1.00 0.98 C ATOM 374 C CYS 22 -5.694 -3.213 0.142 1.00 0.98 C ATOM 375 O CYS 22 -6.707 -3.491 0.786 1.00 0.98 O ATOM 376 CB CYS 22 -3.987 -2.806 1.887 1.00 0.98 C ATOM 377 SG CYS 22 -3.145 -4.376 1.510 1.00 0.98 S ATOM 383 N ASP 23 -5.433 -3.722 -1.049 1.00 0.80 N ATOM 384 CA ASP 23 -6.329 -4.637 -1.722 1.00 0.80 C ATOM 385 C ASP 23 -5.677 -5.983 -2.000 1.00 0.80 C ATOM 386 O ASP 23 -5.042 -6.183 -3.042 1.00 0.80 O ATOM 387 CB ASP 23 -6.782 -3.961 -3.016 1.00 0.80 C ATOM 388 CG ASP 23 -7.754 -4.742 -3.869 1.00 0.80 C ATOM 389 OD1 ASP 23 -7.784 -5.954 -3.776 1.00 0.80 O ATOM 390 OD2 ASP 23 -8.475 -4.125 -4.637 1.00 0.80 O ATOM 395 N GLU 24 -5.896 -6.940 -1.091 1.00 0.92 N ATOM 396 CA GLU 24 -5.301 -8.266 -1.238 1.00 0.92 C ATOM 397 C GLU 24 -5.717 -8.950 -2.542 1.00 0.92 C ATOM 398 O GLU 24 -4.902 -9.615 -3.176 1.00 0.92 O ATOM 399 CB GLU 24 -5.674 -9.180 -0.064 1.00 0.92 C ATOM 400 CG GLU 24 -5.030 -10.576 -0.159 1.00 0.92 C ATOM 401 CD GLU 24 -5.358 -11.515 0.988 1.00 0.92 C ATOM 402 OE1 GLU 24 -6.029 -11.115 1.909 1.00 0.92 O ATOM 403 OE2 GLU 24 -4.932 -12.662 0.915 1.00 0.92 O ATOM 410 N SER 25 -6.977 -8.782 -2.949 1.00 0.84 N ATOM 411 CA SER 25 -7.507 -9.449 -4.140 1.00 0.84 C ATOM 412 C SER 25 -6.746 -9.063 -5.402 1.00 0.84 C ATOM 413 O SER 25 -6.467 -9.914 -6.251 1.00 0.84 O ATOM 414 CB SER 25 -8.978 -9.123 -4.320 1.00 0.84 C ATOM 415 OG SER 25 -9.757 -9.670 -3.284 1.00 0.84 O ATOM 421 N ASN 26 -6.372 -7.788 -5.505 1.00 0.31 N ATOM 422 CA ASN 26 -5.620 -7.305 -6.659 1.00 0.31 C ATOM 423 C ASN 26 -4.110 -7.262 -6.405 1.00 0.31 C ATOM 424 O ASN 26 -3.369 -6.641 -7.171 1.00 0.31 O ATOM 425 CB ASN 26 -6.124 -5.947 -7.133 1.00 0.31 C ATOM 426 CG ASN 26 -7.484 -6.011 -7.832 1.00 0.31 C ATOM 427 OD1 ASN 26 -7.545 -6.511 -8.966 1.00 0.31 O ATOM 428 ND2 ASN 26 -8.542 -5.512 -7.227 1.00 0.31 N ATOM 435 N HIS 27 -3.662 -7.888 -5.311 1.00 0.61 N ATOM 436 CA HIS 27 -2.258 -7.950 -4.919 1.00 0.61 C ATOM 437 C HIS 27 -1.593 -6.583 -4.849 1.00 0.61 C ATOM 438 O HIS 27 -0.465 -6.451 -5.323 1.00 0.61 O ATOM 439 CB HIS 27 -1.430 -8.775 -5.919 1.00 0.61 C ATOM 440 CG HIS 27 -1.930 -10.158 -6.194 1.00 0.61 C ATOM 441 ND1 HIS 27 -1.261 -11.028 -7.033 1.00 0.61 N ATOM 442 CD2 HIS 27 -3.035 -10.810 -5.786 1.00 0.61 C ATOM 443 CE1 HIS 27 -1.930 -12.161 -7.108 1.00 0.61 C ATOM 444 NE2 HIS 27 -3.011 -12.055 -6.364 1.00 0.61 N ATOM 452 N CYS 28 -2.264 -5.563 -4.311 1.00 0.95 N ATOM 453 CA CYS 28 -1.630 -4.240 -4.310 1.00 0.95 C ATOM 454 C CYS 28 -2.202 -3.193 -3.359 1.00 0.95 C ATOM 455 O CYS 28 -3.285 -3.368 -2.801 1.00 0.95 O ATOM 456 CB CYS 28 -1.690 -3.665 -5.720 1.00 0.95 C ATOM 457 SG CYS 28 -3.376 -3.431 -6.327 1.00 0.95 S ATOM 463 N VAL 29 -1.490 -2.066 -3.233 1.00 0.06 N ATOM 464 CA VAL 29 -2.006 -0.928 -2.462 1.00 0.06 C ATOM 465 C VAL 29 -2.188 0.280 -3.352 1.00 0.06 C ATOM 466 O VAL 29 -1.282 0.642 -4.103 1.00 0.06 O ATOM 467 CB VAL 29 -1.043 -0.465 -1.351 1.00 0.06 C ATOM 468 CG1 VAL 29 -1.619 0.718 -0.535 1.00 0.06 C ATOM 469 CG2 VAL 29 -0.713 -1.568 -0.509 1.00 0.06 C ATOM 479 N GLU 30 -3.356 0.904 -3.269 1.00 0.17 N ATOM 480 CA GLU 30 -3.598 2.139 -4.004 1.00 0.17 C ATOM 481 C GLU 30 -3.130 3.287 -3.128 1.00 0.17 C ATOM 482 O GLU 30 -3.535 3.369 -1.968 1.00 0.17 O ATOM 483 CB GLU 30 -5.085 2.339 -4.320 1.00 0.17 C ATOM 484 CG GLU 30 -5.371 3.605 -5.116 1.00 0.17 C ATOM 485 CD GLU 30 -6.838 3.889 -5.361 1.00 0.17 C ATOM 486 OE1 GLU 30 -7.686 3.055 -5.082 1.00 0.17 O ATOM 487 OE2 GLU 30 -7.114 4.991 -5.811 1.00 0.17 O ATOM 494 N VAL 31 -2.270 4.159 -3.652 1.00 0.36 N ATOM 495 CA VAL 31 -1.774 5.282 -2.864 1.00 0.36 C ATOM 496 C VAL 31 -2.052 6.638 -3.515 1.00 0.36 C ATOM 497 O VAL 31 -1.612 6.892 -4.638 1.00 0.36 O ATOM 498 CB VAL 31 -0.265 5.173 -2.748 1.00 0.36 C ATOM 499 CG1 VAL 31 0.256 6.286 -1.966 1.00 0.36 C ATOM 500 CG2 VAL 31 0.146 3.858 -2.184 1.00 0.36 C ATOM 510 N ARG 32 -2.704 7.548 -2.789 1.00 0.78 N ATOM 511 CA ARG 32 -2.985 8.889 -3.311 1.00 0.78 C ATOM 512 C ARG 32 -2.248 9.955 -2.494 1.00 0.78 C ATOM 513 O ARG 32 -2.570 10.221 -1.328 1.00 0.78 O ATOM 514 CB ARG 32 -4.479 9.175 -3.316 1.00 0.78 C ATOM 515 CG ARG 32 -5.332 8.267 -4.226 1.00 0.78 C ATOM 516 CD ARG 32 -6.788 8.649 -4.168 1.00 0.78 C ATOM 517 NE ARG 32 -7.378 8.400 -2.851 1.00 0.78 N ATOM 518 CZ ARG 32 -7.934 7.245 -2.443 1.00 0.78 C ATOM 519 NH1 ARG 32 -8.041 6.187 -3.235 1.00 0.78 N ATOM 520 NH2 ARG 32 -8.383 7.208 -1.209 1.00 0.78 N ATOM 534 N CYS 33 -1.209 10.527 -3.096 1.00 0.65 N ATOM 535 CA CYS 33 -0.321 11.464 -2.412 1.00 0.65 C ATOM 536 C CYS 33 -0.470 12.845 -3.007 1.00 0.65 C ATOM 537 O CYS 33 -0.934 12.991 -4.138 1.00 0.65 O ATOM 538 CB CYS 33 1.133 11.036 -2.547 1.00 0.65 C ATOM 539 SG CYS 33 1.532 9.436 -1.847 1.00 0.65 S ATOM 544 N SER 34 -0.081 13.881 -2.277 1.00 0.84 N ATOM 545 CA SER 34 -0.180 15.194 -2.890 1.00 0.84 C ATOM 546 C SER 34 0.578 15.183 -4.219 1.00 0.84 C ATOM 547 O SER 34 1.739 14.769 -4.275 1.00 0.84 O ATOM 548 CB SER 34 0.384 16.256 -1.962 1.00 0.84 C ATOM 549 OG SER 34 0.330 17.535 -2.543 1.00 0.84 O ATOM 555 N ASP 35 -0.116 15.610 -5.275 1.00 0.83 N ATOM 556 CA ASP 35 0.368 15.710 -6.657 1.00 0.83 C ATOM 557 C ASP 35 0.746 14.392 -7.375 1.00 0.83 C ATOM 558 O ASP 35 1.260 14.451 -8.496 1.00 0.83 O ATOM 559 CB ASP 35 1.573 16.655 -6.706 1.00 0.83 C ATOM 560 CG ASP 35 1.211 18.066 -6.258 1.00 0.83 C ATOM 561 OD1 ASP 35 0.186 18.559 -6.665 1.00 0.83 O ATOM 562 OD2 ASP 35 1.942 18.619 -5.471 1.00 0.83 O ATOM 567 N THR 36 0.498 13.219 -6.777 1.00 0.99 N ATOM 568 CA THR 36 0.847 11.972 -7.473 1.00 0.99 C ATOM 569 C THR 36 0.063 10.717 -7.021 1.00 0.99 C ATOM 570 O THR 36 -0.852 10.772 -6.194 1.00 0.99 O ATOM 571 CB THR 36 2.373 11.723 -7.386 1.00 0.99 C ATOM 572 OG1 THR 36 2.750 10.646 -8.275 1.00 0.99 O ATOM 573 CG2 THR 36 2.754 11.386 -5.986 1.00 0.99 C ATOM 581 N LYS 37 0.432 9.577 -7.599 1.00 0.31 N ATOM 582 CA LYS 37 -0.229 8.304 -7.315 1.00 0.31 C ATOM 583 C LYS 37 0.732 7.127 -7.445 1.00 0.31 C ATOM 584 O LYS 37 1.556 7.094 -8.362 1.00 0.31 O ATOM 585 CB LYS 37 -1.439 8.118 -8.246 1.00 0.31 C ATOM 586 CG LYS 37 -2.313 6.892 -7.944 1.00 0.31 C ATOM 587 CD LYS 37 -3.563 6.865 -8.810 1.00 0.31 C ATOM 588 CE LYS 37 -4.453 5.681 -8.446 1.00 0.31 C ATOM 589 NZ LYS 37 -5.691 5.639 -9.274 1.00 0.31 N ATOM 603 N TYR 38 0.624 6.168 -6.523 1.00 0.35 N ATOM 604 CA TYR 38 1.478 4.977 -6.557 1.00 0.35 C ATOM 605 C TYR 38 0.665 3.690 -6.443 1.00 0.35 C ATOM 606 O TYR 38 -0.437 3.673 -5.880 1.00 0.35 O ATOM 607 CB TYR 38 2.503 4.976 -5.405 1.00 0.35 C ATOM 608 CG TYR 38 3.384 6.173 -5.317 1.00 0.35 C ATOM 609 CD1 TYR 38 2.944 7.294 -4.630 1.00 0.35 C ATOM 610 CD2 TYR 38 4.635 6.160 -5.894 1.00 0.35 C ATOM 611 CE1 TYR 38 3.762 8.392 -4.526 1.00 0.35 C ATOM 612 CE2 TYR 38 5.451 7.265 -5.791 1.00 0.35 C ATOM 613 CZ TYR 38 5.016 8.377 -5.108 1.00 0.35 C ATOM 614 OH TYR 38 5.834 9.480 -4.997 1.00 0.35 O ATOM 624 N THR 39 1.230 2.605 -6.964 1.00 0.49 N ATOM 625 CA THR 39 0.674 1.276 -6.738 1.00 0.49 C ATOM 626 C THR 39 1.772 0.465 -6.074 1.00 0.49 C ATOM 627 O THR 39 2.887 0.400 -6.595 1.00 0.49 O ATOM 628 CB THR 39 0.202 0.597 -8.031 1.00 0.49 C ATOM 629 OG1 THR 39 -0.808 1.405 -8.649 1.00 0.49 O ATOM 630 CG2 THR 39 -0.387 -0.770 -7.689 1.00 0.49 C ATOM 638 N LEU 40 1.483 -0.120 -4.919 1.00 0.32 N ATOM 639 CA LEU 40 2.538 -0.825 -4.188 1.00 0.32 C ATOM 640 C LEU 40 2.323 -2.322 -4.207 1.00 0.32 C ATOM 641 O LEU 40 1.172 -2.756 -4.225 1.00 0.32 O ATOM 642 CB LEU 40 2.521 -0.400 -2.739 1.00 0.32 C ATOM 643 CG LEU 40 2.464 1.091 -2.518 1.00 0.32 C ATOM 644 CD1 LEU 40 2.407 1.343 -1.049 1.00 0.32 C ATOM 645 CD2 LEU 40 3.628 1.800 -3.173 1.00 0.32 C ATOM 657 N CYS 41 3.432 -3.073 -4.117 1.00 0.05 N ATOM 658 CA CYS 41 3.526 -4.540 -3.969 1.00 0.05 C ATOM 659 C CYS 41 4.520 -5.116 -4.973 1.00 0.05 C ATOM 660 O CYS 41 4.657 -6.335 -5.095 1.00 0.05 O ATOM 661 OXT CYS 41 4.991 -4.367 -5.826 1.00 0.05 O ATOM 662 CB CYS 41 2.182 -5.247 -4.116 1.00 0.05 C ATOM 663 SG CYS 41 2.220 -7.026 -3.873 1.00 0.05 S TER END