####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS335_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.75 1.75 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.75 1.75 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 17 - 40 0.97 2.01 LCS_AVERAGE: 47.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 4 41 41 3 11 19 28 34 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 13 41 41 8 11 24 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 13 41 41 8 11 13 19 37 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 13 41 41 8 11 12 26 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 13 41 41 8 13 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 13 41 41 8 11 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 13 41 41 8 11 13 22 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 13 41 41 8 11 13 28 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 13 41 41 8 19 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 13 41 41 8 11 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 13 41 41 8 11 13 21 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 13 41 41 8 11 12 24 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 13 41 41 3 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 13 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 12 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 22 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 24 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 24 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 24 41 41 8 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 24 41 41 7 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 24 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 24 41 41 6 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 24 41 41 4 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 24 41 41 3 16 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 24 41 41 6 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 24 41 41 6 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 24 41 41 6 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 24 41 41 6 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 24 41 41 7 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 24 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 24 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 24 41 41 8 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 24 41 41 5 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 24 41 41 8 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 24 41 41 6 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 24 41 41 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 24 41 41 7 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 24 41 41 7 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 24 41 41 7 17 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 24 41 41 4 17 25 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 10 41 41 0 7 11 24 29 36 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 82.39 ( 47.17 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 21.95 46.34 65.85 80.49 92.68 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.39 0.69 1.06 1.24 1.55 1.66 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 GDT RMS_ALL_AT 2.33 2.20 1.88 1.79 1.77 1.76 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 1.75 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.955 0 0.357 0.371 5.548 16.364 12.121 4.580 LGA Q 2 Q 2 1.665 0 0.178 1.275 5.721 54.545 33.131 4.400 LGA E 3 E 3 2.923 0 0.018 1.514 8.051 30.000 14.545 7.028 LGA T 4 T 4 2.681 0 0.060 1.002 4.287 35.455 26.494 3.714 LGA R 5 R 5 1.478 0 0.072 1.309 5.126 58.182 47.769 5.126 LGA K 6 K 6 1.269 0 0.018 1.209 8.371 61.818 33.333 8.371 LGA K 7 K 7 2.658 0 0.087 0.701 3.535 30.000 27.273 2.122 LGA C 8 C 8 2.731 0 0.057 0.758 6.215 35.455 26.667 6.215 LGA T 9 T 9 1.510 0 0.092 1.036 4.295 58.182 50.649 1.370 LGA E 10 E 10 1.364 0 0.026 0.873 6.788 61.818 34.747 6.788 LGA M 11 M 11 2.723 0 0.056 1.072 4.060 30.000 22.727 2.934 LGA K 12 K 12 2.987 0 0.092 0.749 3.283 27.727 32.727 2.293 LGA K 13 K 13 1.731 0 0.069 0.609 2.005 47.727 52.727 1.515 LGA K 14 K 14 1.474 0 0.080 0.639 3.770 54.545 51.313 3.770 LGA F 15 F 15 1.182 0 0.137 0.386 2.916 73.636 60.496 2.286 LGA K 16 K 16 0.804 0 0.017 0.936 3.811 81.818 59.394 3.811 LGA N 17 N 17 0.362 0 0.192 0.471 2.215 90.909 81.136 2.215 LGA C 18 C 18 0.723 0 0.032 0.039 1.008 77.727 79.091 0.666 LGA E 19 E 19 1.082 0 0.235 0.471 1.919 65.455 69.293 0.881 LGA V 20 V 20 1.610 0 0.043 0.085 1.783 50.909 50.909 1.751 LGA R 21 R 21 1.114 0 0.091 1.084 5.617 65.455 36.033 5.561 LGA C 22 C 22 1.117 0 0.181 0.958 3.688 77.727 62.121 3.688 LGA D 23 D 23 1.631 0 0.424 1.163 3.659 42.727 41.818 1.907 LGA E 24 E 24 1.821 0 0.061 0.568 4.150 47.727 33.131 4.150 LGA S 25 S 25 1.472 0 0.078 0.138 1.472 65.455 65.455 1.257 LGA N 26 N 26 0.987 0 0.196 1.187 4.288 69.545 55.227 4.288 LGA H 27 H 27 0.979 0 0.054 0.618 3.079 81.818 62.000 1.729 LGA C 28 C 28 1.276 0 0.181 0.748 2.666 65.455 59.091 2.666 LGA V 29 V 29 1.068 0 0.076 0.115 1.766 69.545 61.558 1.720 LGA E 30 E 30 1.181 0 0.085 0.624 1.915 61.818 60.606 1.866 LGA V 31 V 31 1.097 0 0.051 0.102 1.185 69.545 67.792 1.089 LGA R 32 R 32 0.963 0 0.120 1.173 8.633 81.818 42.479 8.633 LGA C 33 C 33 0.915 0 0.547 0.636 3.675 60.000 73.333 0.358 LGA S 34 S 34 1.185 0 0.256 0.552 2.729 65.455 59.091 2.729 LGA D 35 D 35 1.824 0 0.224 1.036 7.476 54.545 30.682 7.476 LGA T 36 T 36 1.575 0 0.046 0.164 2.304 62.273 55.584 2.304 LGA K 37 K 37 0.471 0 0.109 1.481 4.542 78.636 59.192 4.542 LGA Y 38 Y 38 1.249 0 0.015 1.326 5.269 77.727 44.697 5.269 LGA T 39 T 39 1.086 0 0.113 0.118 2.703 52.273 51.688 1.766 LGA L 40 L 40 1.895 0 0.174 1.064 4.160 62.273 41.136 4.160 LGA C 41 C 41 3.775 0 0.427 0.918 7.462 23.636 17.403 7.462 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.749 1.758 2.709 57.993 47.480 28.248 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.75 81.707 91.217 2.218 LGA_LOCAL RMSD: 1.749 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.749 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.749 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.938782 * X + -0.250095 * Y + -0.236939 * Z + 1.541021 Y_new = 0.341738 * X + -0.763105 * Y + -0.548531 * Z + -0.340898 Z_new = -0.043624 * X + -0.595923 * Y + 0.801856 * Z + 3.333085 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.792480 0.043638 -0.639121 [DEG: 159.9973 2.5003 -36.6189 ] ZXZ: -0.407744 0.640401 -3.068519 [DEG: -23.3620 36.6923 -175.8132 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS335_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.75 91.217 1.75 REMARK ---------------------------------------------------------- MOLECULE T0955TS335_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 -4.294 -14.118 -0.391 1.00 0.40 N ATOM 2 CA SER 1 -2.875 -13.927 -0.647 1.00 0.40 C ATOM 3 C SER 1 -2.265 -13.051 0.439 1.00 0.40 C ATOM 4 O SER 1 -1.700 -11.978 0.161 1.00 0.40 O ATOM 5 CB SER 1 -2.673 -13.292 -2.008 1.00 0.40 C ATOM 6 OG SER 1 -3.126 -14.140 -3.033 1.00 0.40 O ATOM 14 N GLN 2 -2.310 -13.549 1.677 1.00 0.11 N ATOM 15 CA GLN 2 -1.780 -12.830 2.837 1.00 0.11 C ATOM 16 C GLN 2 -0.299 -12.477 2.698 1.00 0.11 C ATOM 17 O GLN 2 0.171 -11.484 3.249 1.00 0.11 O ATOM 18 CB GLN 2 -2.021 -13.667 4.084 1.00 0.11 C ATOM 19 CG GLN 2 -3.502 -13.798 4.453 1.00 0.11 C ATOM 20 CD GLN 2 -4.277 -14.829 3.614 1.00 0.11 C ATOM 21 OE1 GLN 2 -4.127 -14.929 2.371 1.00 0.11 O ATOM 22 NE2 GLN 2 -5.111 -15.615 4.295 1.00 0.11 N ATOM 31 N GLU 3 0.442 -13.259 1.920 1.00 0.07 N ATOM 32 CA GLU 3 1.855 -12.982 1.734 1.00 0.07 C ATOM 33 C GLU 3 2.059 -11.655 1.002 1.00 0.07 C ATOM 34 O GLU 3 3.034 -10.936 1.262 1.00 0.07 O ATOM 35 CB GLU 3 2.530 -14.127 0.980 1.00 0.07 C ATOM 36 CG GLU 3 2.620 -15.441 1.781 1.00 0.07 C ATOM 37 CD GLU 3 3.459 -15.324 3.047 1.00 0.07 C ATOM 38 OE1 GLU 3 4.573 -14.872 2.966 1.00 0.07 O ATOM 39 OE2 GLU 3 2.967 -15.671 4.107 1.00 0.07 O ATOM 46 N THR 4 1.135 -11.309 0.094 1.00 0.41 N ATOM 47 CA THR 4 1.317 -10.087 -0.659 1.00 0.41 C ATOM 48 C THR 4 0.797 -8.959 0.195 1.00 0.41 C ATOM 49 O THR 4 1.335 -7.857 0.180 1.00 0.41 O ATOM 50 CB THR 4 0.534 -10.120 -1.986 1.00 0.41 C ATOM 51 OG1 THR 4 -0.874 -10.207 -1.717 1.00 0.41 O ATOM 52 CG2 THR 4 0.949 -11.342 -2.776 1.00 0.41 C ATOM 60 N ARG 5 -0.210 -9.259 1.016 1.00 0.16 N ATOM 61 CA ARG 5 -0.744 -8.232 1.889 1.00 0.16 C ATOM 62 C ARG 5 0.360 -7.786 2.835 1.00 0.16 C ATOM 63 O ARG 5 0.585 -6.593 3.014 1.00 0.16 O ATOM 64 CB ARG 5 -1.939 -8.726 2.673 1.00 0.16 C ATOM 65 CG ARG 5 -2.615 -7.667 3.522 1.00 0.16 C ATOM 66 CD ARG 5 -3.780 -8.224 4.243 1.00 0.16 C ATOM 67 NE ARG 5 -3.402 -9.159 5.290 1.00 0.16 N ATOM 68 CZ ARG 5 -4.182 -10.166 5.744 1.00 0.16 C ATOM 69 NH1 ARG 5 -5.370 -10.399 5.207 1.00 0.16 N ATOM 70 NH2 ARG 5 -3.751 -10.932 6.736 1.00 0.16 N ATOM 84 N LYS 6 1.086 -8.747 3.412 1.00 0.98 N ATOM 85 CA LYS 6 2.160 -8.401 4.330 1.00 0.98 C ATOM 86 C LYS 6 3.235 -7.562 3.639 1.00 0.98 C ATOM 87 O LYS 6 3.655 -6.534 4.184 1.00 0.98 O ATOM 88 CB LYS 6 2.762 -9.668 4.939 1.00 0.98 C ATOM 89 CG LYS 6 1.863 -10.354 5.987 1.00 0.98 C ATOM 90 CD LYS 6 2.575 -11.525 6.662 1.00 0.98 C ATOM 91 CE LYS 6 2.680 -12.703 5.706 1.00 0.98 C ATOM 92 NZ LYS 6 3.247 -13.927 6.346 1.00 0.98 N ATOM 106 N LYS 7 3.612 -7.930 2.399 1.00 0.13 N ATOM 107 CA LYS 7 4.598 -7.141 1.659 1.00 0.13 C ATOM 108 C LYS 7 4.120 -5.705 1.563 1.00 0.13 C ATOM 109 O LYS 7 4.847 -4.750 1.859 1.00 0.13 O ATOM 110 CB LYS 7 4.767 -7.669 0.227 1.00 0.13 C ATOM 111 CG LYS 7 5.815 -6.925 -0.613 1.00 0.13 C ATOM 112 CD LYS 7 5.883 -7.464 -2.055 1.00 0.13 C ATOM 113 CE LYS 7 6.987 -6.771 -2.862 1.00 0.13 C ATOM 114 NZ LYS 7 7.008 -7.191 -4.300 1.00 0.13 N ATOM 128 N CYS 8 2.867 -5.571 1.166 1.00 0.16 N ATOM 129 CA CYS 8 2.237 -4.287 0.948 1.00 0.16 C ATOM 130 C CYS 8 2.118 -3.454 2.217 1.00 0.16 C ATOM 131 O CYS 8 2.328 -2.238 2.188 1.00 0.16 O ATOM 132 CB CYS 8 0.853 -4.507 0.340 1.00 0.16 C ATOM 133 SG CYS 8 0.840 -5.125 -1.411 1.00 0.16 S ATOM 138 N THR 9 1.832 -4.087 3.357 1.00 0.20 N ATOM 139 CA THR 9 1.710 -3.300 4.576 1.00 0.20 C ATOM 140 C THR 9 3.070 -2.784 5.042 1.00 0.20 C ATOM 141 O THR 9 3.149 -1.751 5.712 1.00 0.20 O ATOM 142 CB THR 9 1.008 -4.072 5.714 1.00 0.20 C ATOM 143 OG1 THR 9 1.746 -5.261 6.037 1.00 0.20 O ATOM 144 CG2 THR 9 -0.435 -4.423 5.308 1.00 0.20 C ATOM 152 N GLU 10 4.153 -3.462 4.666 1.00 0.32 N ATOM 153 CA GLU 10 5.463 -2.949 5.026 1.00 0.32 C ATOM 154 C GLU 10 5.842 -1.799 4.074 1.00 0.32 C ATOM 155 O GLU 10 6.295 -0.735 4.502 1.00 0.32 O ATOM 156 CB GLU 10 6.520 -4.057 4.960 1.00 0.32 C ATOM 157 CG GLU 10 7.903 -3.652 5.482 1.00 0.32 C ATOM 158 CD GLU 10 7.916 -3.428 6.985 1.00 0.32 C ATOM 159 OE1 GLU 10 7.090 -3.997 7.660 1.00 0.32 O ATOM 160 OE2 GLU 10 8.730 -2.661 7.466 1.00 0.32 O ATOM 167 N MET 11 5.592 -1.989 2.770 1.00 0.45 N ATOM 168 CA MET 11 5.957 -0.982 1.774 1.00 0.45 C ATOM 169 C MET 11 5.241 0.342 1.958 1.00 0.45 C ATOM 170 O MET 11 5.842 1.407 1.778 1.00 0.45 O ATOM 171 CB MET 11 5.667 -1.469 0.363 1.00 0.45 C ATOM 172 CG MET 11 6.532 -2.577 -0.137 1.00 0.45 C ATOM 173 SD MET 11 6.008 -3.084 -1.748 1.00 0.45 S ATOM 174 CE MET 11 6.540 -1.671 -2.697 1.00 0.45 C ATOM 184 N LYS 12 3.968 0.290 2.363 1.00 0.55 N ATOM 185 CA LYS 12 3.181 1.503 2.527 1.00 0.55 C ATOM 186 C LYS 12 3.746 2.448 3.574 1.00 0.55 C ATOM 187 O LYS 12 3.355 3.607 3.599 1.00 0.55 O ATOM 188 CB LYS 12 1.722 1.243 2.875 1.00 0.55 C ATOM 189 CG LYS 12 1.464 0.698 4.250 1.00 0.55 C ATOM 190 CD LYS 12 -0.036 0.492 4.516 1.00 0.55 C ATOM 191 CE LYS 12 -0.303 0.011 5.936 1.00 0.55 C ATOM 192 NZ LYS 12 -1.768 -0.186 6.189 1.00 0.55 N ATOM 206 N LYS 13 4.667 1.999 4.436 1.00 0.09 N ATOM 207 CA LYS 13 5.231 2.896 5.443 1.00 0.09 C ATOM 208 C LYS 13 5.901 4.099 4.769 1.00 0.09 C ATOM 209 O LYS 13 5.914 5.209 5.304 1.00 0.09 O ATOM 210 CB LYS 13 6.259 2.159 6.296 1.00 0.09 C ATOM 211 CG LYS 13 5.683 1.111 7.240 1.00 0.09 C ATOM 212 CD LYS 13 6.806 0.418 8.003 1.00 0.09 C ATOM 213 CE LYS 13 6.287 -0.647 8.949 1.00 0.09 C ATOM 214 NZ LYS 13 7.415 -1.348 9.652 1.00 0.09 N ATOM 228 N LYS 14 6.416 3.893 3.552 1.00 0.01 N ATOM 229 CA LYS 14 7.089 4.932 2.780 1.00 0.01 C ATOM 230 C LYS 14 6.112 6.042 2.398 1.00 0.01 C ATOM 231 O LYS 14 6.505 7.158 2.061 1.00 0.01 O ATOM 232 CB LYS 14 7.691 4.325 1.518 1.00 0.01 C ATOM 233 CG LYS 14 8.848 3.380 1.768 1.00 0.01 C ATOM 234 CD LYS 14 9.365 2.787 0.468 1.00 0.01 C ATOM 235 CE LYS 14 10.530 1.840 0.718 1.00 0.01 C ATOM 236 NZ LYS 14 11.034 1.232 -0.544 1.00 0.01 N ATOM 250 N PHE 15 4.831 5.695 2.414 1.00 0.63 N ATOM 251 CA PHE 15 3.726 6.535 2.049 1.00 0.63 C ATOM 252 C PHE 15 2.770 6.694 3.227 1.00 0.63 C ATOM 253 O PHE 15 1.582 6.937 3.040 1.00 0.63 O ATOM 254 CB PHE 15 3.022 5.892 0.872 1.00 0.63 C ATOM 255 CG PHE 15 3.929 5.744 -0.292 1.00 0.63 C ATOM 256 CD1 PHE 15 4.592 4.561 -0.514 1.00 0.63 C ATOM 257 CD2 PHE 15 4.137 6.793 -1.159 1.00 0.63 C ATOM 258 CE1 PHE 15 5.444 4.437 -1.585 1.00 0.63 C ATOM 259 CE2 PHE 15 4.972 6.670 -2.230 1.00 0.63 C ATOM 260 CZ PHE 15 5.630 5.490 -2.449 1.00 0.63 C ATOM 270 N LYS 16 3.289 6.626 4.454 1.00 0.53 N ATOM 271 CA LYS 16 2.458 6.764 5.654 1.00 0.53 C ATOM 272 C LYS 16 1.688 8.088 5.749 1.00 0.53 C ATOM 273 O LYS 16 0.706 8.183 6.483 1.00 0.53 O ATOM 274 CB LYS 16 3.324 6.580 6.898 1.00 0.53 C ATOM 275 CG LYS 16 4.358 7.673 7.114 1.00 0.53 C ATOM 276 CD LYS 16 5.235 7.365 8.313 1.00 0.53 C ATOM 277 CE LYS 16 6.254 8.467 8.551 1.00 0.53 C ATOM 278 NZ LYS 16 7.152 8.151 9.696 1.00 0.53 N ATOM 292 N ASN 17 2.134 9.110 5.014 1.00 0.58 N ATOM 293 CA ASN 17 1.487 10.420 5.011 1.00 0.58 C ATOM 294 C ASN 17 0.546 10.584 3.807 1.00 0.58 C ATOM 295 O ASN 17 0.056 11.683 3.532 1.00 0.58 O ATOM 296 CB ASN 17 2.537 11.512 5.008 1.00 0.58 C ATOM 297 CG ASN 17 3.335 11.555 6.288 1.00 0.58 C ATOM 298 OD1 ASN 17 2.802 11.361 7.387 1.00 0.58 O ATOM 299 ND2 ASN 17 4.614 11.810 6.163 1.00 0.58 N ATOM 306 N CYS 18 0.308 9.489 3.092 1.00 0.29 N ATOM 307 CA CYS 18 -0.531 9.457 1.899 1.00 0.29 C ATOM 308 C CYS 18 -1.776 8.610 2.130 1.00 0.29 C ATOM 309 O CYS 18 -1.834 7.827 3.077 1.00 0.29 O ATOM 310 CB CYS 18 0.247 8.875 0.729 1.00 0.29 C ATOM 311 SG CYS 18 1.746 9.790 0.316 1.00 0.29 S ATOM 316 N GLU 19 -2.800 8.774 1.302 1.00 0.60 N ATOM 317 CA GLU 19 -3.931 7.866 1.429 1.00 0.60 C ATOM 318 C GLU 19 -3.462 6.517 0.927 1.00 0.60 C ATOM 319 O GLU 19 -2.914 6.441 -0.172 1.00 0.60 O ATOM 320 CB GLU 19 -5.135 8.331 0.603 1.00 0.60 C ATOM 321 CG GLU 19 -6.385 7.446 0.761 1.00 0.60 C ATOM 322 CD GLU 19 -7.577 7.918 -0.053 1.00 0.60 C ATOM 323 OE1 GLU 19 -7.490 8.949 -0.675 1.00 0.60 O ATOM 324 OE2 GLU 19 -8.582 7.230 -0.052 1.00 0.60 O ATOM 331 N VAL 20 -3.655 5.458 1.705 1.00 0.60 N ATOM 332 CA VAL 20 -3.213 4.146 1.250 1.00 0.60 C ATOM 333 C VAL 20 -4.328 3.107 1.290 1.00 0.60 C ATOM 334 O VAL 20 -4.930 2.869 2.340 1.00 0.60 O ATOM 335 CB VAL 20 -2.033 3.641 2.098 1.00 0.60 C ATOM 336 CG1 VAL 20 -1.669 2.321 1.600 1.00 0.60 C ATOM 337 CG2 VAL 20 -0.824 4.600 1.994 1.00 0.60 C ATOM 347 N ARG 21 -4.572 2.463 0.151 1.00 0.99 N ATOM 348 CA ARG 21 -5.601 1.439 0.036 1.00 0.99 C ATOM 349 C ARG 21 -4.988 0.100 -0.378 1.00 0.99 C ATOM 350 O ARG 21 -4.552 -0.064 -1.523 1.00 0.99 O ATOM 351 CB ARG 21 -6.598 1.852 -1.030 1.00 0.99 C ATOM 352 CG ARG 21 -7.291 3.194 -0.806 1.00 0.99 C ATOM 353 CD ARG 21 -8.193 3.526 -1.949 1.00 0.99 C ATOM 354 NE ARG 21 -8.816 4.842 -1.814 1.00 0.99 N ATOM 355 CZ ARG 21 -9.702 5.356 -2.683 1.00 0.99 C ATOM 356 NH1 ARG 21 -10.082 4.671 -3.741 1.00 0.99 N ATOM 357 NH2 ARG 21 -10.180 6.563 -2.450 1.00 0.99 N ATOM 371 N CYS 22 -4.932 -0.879 0.527 1.00 0.13 N ATOM 372 CA CYS 22 -4.282 -2.123 0.109 1.00 0.13 C ATOM 373 C CYS 22 -5.261 -3.080 -0.539 1.00 0.13 C ATOM 374 O CYS 22 -6.143 -3.663 0.099 1.00 0.13 O ATOM 375 CB CYS 22 -3.573 -2.836 1.260 1.00 0.13 C ATOM 376 SG CYS 22 -2.751 -4.393 0.732 1.00 0.13 S ATOM 382 N ASP 23 -5.088 -3.257 -1.833 1.00 0.66 N ATOM 383 CA ASP 23 -5.965 -4.080 -2.629 1.00 0.66 C ATOM 384 C ASP 23 -5.464 -5.507 -2.609 1.00 0.66 C ATOM 385 O ASP 23 -4.885 -6.007 -3.582 1.00 0.66 O ATOM 386 CB ASP 23 -6.044 -3.519 -4.055 1.00 0.66 C ATOM 387 CG ASP 23 -7.025 -4.229 -4.947 1.00 0.66 C ATOM 388 OD1 ASP 23 -7.622 -5.187 -4.506 1.00 0.66 O ATOM 389 OD2 ASP 23 -7.157 -3.830 -6.083 1.00 0.66 O ATOM 394 N GLU 24 -5.769 -6.194 -1.513 1.00 0.14 N ATOM 395 CA GLU 24 -5.331 -7.577 -1.334 1.00 0.14 C ATOM 396 C GLU 24 -5.768 -8.462 -2.505 1.00 0.14 C ATOM 397 O GLU 24 -5.010 -9.315 -2.968 1.00 0.14 O ATOM 398 CB GLU 24 -5.878 -8.161 -0.026 1.00 0.14 C ATOM 399 CG GLU 24 -5.466 -9.615 0.218 1.00 0.14 C ATOM 400 CD GLU 24 -5.965 -10.194 1.532 1.00 0.14 C ATOM 401 OE1 GLU 24 -6.330 -9.441 2.415 1.00 0.14 O ATOM 402 OE2 GLU 24 -6.004 -11.401 1.634 1.00 0.14 O ATOM 409 N SER 25 -6.975 -8.222 -3.018 1.00 0.69 N ATOM 410 CA SER 25 -7.538 -9.015 -4.108 1.00 0.69 C ATOM 411 C SER 25 -6.676 -8.999 -5.368 1.00 0.69 C ATOM 412 O SER 25 -6.660 -9.975 -6.121 1.00 0.69 O ATOM 413 CB SER 25 -8.930 -8.515 -4.453 1.00 0.69 C ATOM 414 OG SER 25 -9.837 -8.741 -3.400 1.00 0.69 O ATOM 420 N ASN 26 -5.994 -7.880 -5.624 1.00 0.10 N ATOM 421 CA ASN 26 -5.152 -7.737 -6.802 1.00 0.10 C ATOM 422 C ASN 26 -3.665 -7.699 -6.453 1.00 0.10 C ATOM 423 O ASN 26 -2.853 -7.244 -7.261 1.00 0.10 O ATOM 424 CB ASN 26 -5.555 -6.521 -7.610 1.00 0.10 C ATOM 425 CG ASN 26 -6.902 -6.694 -8.294 1.00 0.10 C ATOM 426 OD1 ASN 26 -7.113 -7.682 -9.012 1.00 0.10 O ATOM 427 ND2 ASN 26 -7.805 -5.771 -8.088 1.00 0.10 N ATOM 434 N HIS 27 -3.313 -8.145 -5.242 1.00 0.08 N ATOM 435 CA HIS 27 -1.926 -8.169 -4.771 1.00 0.08 C ATOM 436 C HIS 27 -1.226 -6.812 -4.879 1.00 0.08 C ATOM 437 O HIS 27 -0.056 -6.762 -5.263 1.00 0.08 O ATOM 438 CB HIS 27 -1.087 -9.169 -5.586 1.00 0.08 C ATOM 439 CG HIS 27 -1.578 -10.586 -5.592 1.00 0.08 C ATOM 440 ND1 HIS 27 -0.928 -11.587 -6.297 1.00 0.08 N ATOM 441 CD2 HIS 27 -2.637 -11.176 -4.994 1.00 0.08 C ATOM 442 CE1 HIS 27 -1.566 -12.729 -6.125 1.00 0.08 C ATOM 443 NE2 HIS 27 -2.609 -12.515 -5.342 1.00 0.08 N ATOM 451 N CYS 28 -1.910 -5.714 -4.557 1.00 0.34 N ATOM 452 CA CYS 28 -1.262 -4.405 -4.705 1.00 0.34 C ATOM 453 C CYS 28 -1.836 -3.295 -3.844 1.00 0.34 C ATOM 454 O CYS 28 -2.842 -3.490 -3.167 1.00 0.34 O ATOM 455 CB CYS 28 -1.326 -3.976 -6.168 1.00 0.34 C ATOM 456 SG CYS 28 -3.012 -3.734 -6.772 1.00 0.34 S ATOM 462 N VAL 29 -1.176 -2.133 -3.856 1.00 0.60 N ATOM 463 CA VAL 29 -1.670 -0.981 -3.092 1.00 0.60 C ATOM 464 C VAL 29 -1.855 0.259 -3.941 1.00 0.60 C ATOM 465 O VAL 29 -0.971 0.612 -4.722 1.00 0.60 O ATOM 466 CB VAL 29 -0.677 -0.573 -2.007 1.00 0.60 C ATOM 467 CG1 VAL 29 -1.180 0.537 -1.200 1.00 0.60 C ATOM 468 CG2 VAL 29 -0.356 -1.685 -1.197 1.00 0.60 C ATOM 478 N GLU 30 -2.996 0.930 -3.774 1.00 0.02 N ATOM 479 CA GLU 30 -3.232 2.213 -4.429 1.00 0.02 C ATOM 480 C GLU 30 -2.881 3.317 -3.427 1.00 0.02 C ATOM 481 O GLU 30 -3.430 3.363 -2.321 1.00 0.02 O ATOM 482 CB GLU 30 -4.689 2.347 -4.894 1.00 0.02 C ATOM 483 CG GLU 30 -5.026 3.661 -5.628 1.00 0.02 C ATOM 484 CD GLU 30 -6.490 3.743 -6.050 1.00 0.02 C ATOM 485 OE1 GLU 30 -7.230 2.851 -5.707 1.00 0.02 O ATOM 486 OE2 GLU 30 -6.871 4.697 -6.715 1.00 0.02 O ATOM 493 N VAL 31 -1.946 4.186 -3.791 1.00 0.75 N ATOM 494 CA VAL 31 -1.505 5.249 -2.894 1.00 0.75 C ATOM 495 C VAL 31 -1.729 6.632 -3.482 1.00 0.75 C ATOM 496 O VAL 31 -1.368 6.855 -4.636 1.00 0.75 O ATOM 497 CB VAL 31 -0.003 5.121 -2.630 1.00 0.75 C ATOM 498 CG1 VAL 31 0.459 6.242 -1.752 1.00 0.75 C ATOM 499 CG2 VAL 31 0.327 3.780 -2.031 1.00 0.75 C ATOM 509 N ARG 32 -2.294 7.569 -2.704 1.00 0.95 N ATOM 510 CA ARG 32 -2.451 8.935 -3.216 1.00 0.95 C ATOM 511 C ARG 32 -1.847 9.983 -2.286 1.00 0.95 C ATOM 512 O ARG 32 -2.241 10.152 -1.123 1.00 0.95 O ATOM 513 CB ARG 32 -3.902 9.291 -3.484 1.00 0.95 C ATOM 514 CG ARG 32 -4.074 10.695 -4.079 1.00 0.95 C ATOM 515 CD ARG 32 -5.489 11.027 -4.415 1.00 0.95 C ATOM 516 NE ARG 32 -5.605 12.375 -4.996 1.00 0.95 N ATOM 517 CZ ARG 32 -6.717 12.864 -5.593 1.00 0.95 C ATOM 518 NH1 ARG 32 -7.788 12.098 -5.681 1.00 0.95 N ATOM 519 NH2 ARG 32 -6.755 14.098 -6.096 1.00 0.95 N ATOM 533 N CYS 33 -0.877 10.700 -2.828 1.00 0.39 N ATOM 534 CA CYS 33 -0.128 11.715 -2.115 1.00 0.39 C ATOM 535 C CYS 33 -0.455 13.059 -2.739 1.00 0.39 C ATOM 536 O CYS 33 0.077 13.401 -3.799 1.00 0.39 O ATOM 537 CB CYS 33 1.356 11.425 -2.255 1.00 0.39 C ATOM 538 SG CYS 33 1.827 9.749 -1.711 1.00 0.39 S ATOM 543 N SER 34 -1.364 13.807 -2.122 1.00 0.93 N ATOM 544 CA SER 34 -1.870 15.033 -2.737 1.00 0.93 C ATOM 545 C SER 34 -2.503 14.646 -4.081 1.00 0.93 C ATOM 546 O SER 34 -3.496 13.920 -4.085 1.00 0.93 O ATOM 547 CB SER 34 -0.768 16.079 -2.877 1.00 0.93 C ATOM 548 OG SER 34 -1.308 17.348 -3.139 1.00 0.93 O ATOM 554 N ASP 35 -1.956 15.119 -5.206 1.00 0.83 N ATOM 555 CA ASP 35 -2.522 14.781 -6.515 1.00 0.83 C ATOM 556 C ASP 35 -1.697 13.751 -7.311 1.00 0.83 C ATOM 557 O ASP 35 -1.934 13.564 -8.507 1.00 0.83 O ATOM 558 CB ASP 35 -2.724 16.043 -7.348 1.00 0.83 C ATOM 559 CG ASP 35 -3.778 16.972 -6.743 1.00 0.83 C ATOM 560 OD1 ASP 35 -4.822 16.494 -6.318 1.00 0.83 O ATOM 561 OD2 ASP 35 -3.526 18.152 -6.691 1.00 0.83 O ATOM 566 N THR 36 -0.742 13.085 -6.658 1.00 0.82 N ATOM 567 CA THR 36 0.094 12.079 -7.322 1.00 0.82 C ATOM 568 C THR 36 -0.186 10.666 -6.818 1.00 0.82 C ATOM 569 O THR 36 -0.254 10.425 -5.610 1.00 0.82 O ATOM 570 CB THR 36 1.593 12.390 -7.130 1.00 0.82 C ATOM 571 OG1 THR 36 1.897 13.663 -7.726 1.00 0.82 O ATOM 572 CG2 THR 36 2.467 11.300 -7.769 1.00 0.82 C ATOM 580 N LYS 37 -0.348 9.718 -7.743 1.00 0.91 N ATOM 581 CA LYS 37 -0.576 8.348 -7.306 1.00 0.91 C ATOM 582 C LYS 37 0.587 7.413 -7.567 1.00 0.91 C ATOM 583 O LYS 37 1.340 7.576 -8.532 1.00 0.91 O ATOM 584 CB LYS 37 -1.834 7.740 -7.917 1.00 0.91 C ATOM 585 CG LYS 37 -3.134 8.372 -7.476 1.00 0.91 C ATOM 586 CD LYS 37 -4.312 7.548 -7.981 1.00 0.91 C ATOM 587 CE LYS 37 -5.640 8.124 -7.548 1.00 0.91 C ATOM 588 NZ LYS 37 -6.775 7.262 -7.986 1.00 0.91 N ATOM 602 N TYR 38 0.684 6.407 -6.700 1.00 0.92 N ATOM 603 CA TYR 38 1.690 5.355 -6.784 1.00 0.92 C ATOM 604 C TYR 38 1.014 3.988 -6.671 1.00 0.92 C ATOM 605 O TYR 38 -0.034 3.853 -6.027 1.00 0.92 O ATOM 606 CB TYR 38 2.708 5.506 -5.641 1.00 0.92 C ATOM 607 CG TYR 38 3.374 6.847 -5.595 1.00 0.92 C ATOM 608 CD1 TYR 38 2.741 7.899 -4.937 1.00 0.92 C ATOM 609 CD2 TYR 38 4.607 7.038 -6.180 1.00 0.92 C ATOM 610 CE1 TYR 38 3.347 9.130 -4.888 1.00 0.92 C ATOM 611 CE2 TYR 38 5.211 8.276 -6.119 1.00 0.92 C ATOM 612 CZ TYR 38 4.583 9.318 -5.476 1.00 0.92 C ATOM 613 OH TYR 38 5.190 10.553 -5.415 1.00 0.92 O ATOM 623 N THR 39 1.619 2.970 -7.277 1.00 0.71 N ATOM 624 CA THR 39 1.127 1.607 -7.097 1.00 0.71 C ATOM 625 C THR 39 2.229 0.773 -6.470 1.00 0.71 C ATOM 626 O THR 39 3.367 0.792 -6.944 1.00 0.71 O ATOM 627 CB THR 39 0.652 0.968 -8.411 1.00 0.71 C ATOM 628 OG1 THR 39 -0.417 1.751 -8.959 1.00 0.71 O ATOM 629 CG2 THR 39 0.144 -0.464 -8.143 1.00 0.71 C ATOM 637 N LEU 40 1.905 0.069 -5.391 1.00 0.15 N ATOM 638 CA LEU 40 2.925 -0.715 -4.701 1.00 0.15 C ATOM 639 C LEU 40 2.721 -2.207 -4.861 1.00 0.15 C ATOM 640 O LEU 40 1.577 -2.656 -5.016 1.00 0.15 O ATOM 641 CB LEU 40 2.910 -0.444 -3.201 1.00 0.15 C ATOM 642 CG LEU 40 2.934 1.014 -2.794 1.00 0.15 C ATOM 643 CD1 LEU 40 2.911 1.105 -1.267 1.00 0.15 C ATOM 644 CD2 LEU 40 4.121 1.699 -3.395 1.00 0.15 C ATOM 656 N CYS 41 3.841 -2.936 -4.715 1.00 0.34 N ATOM 657 CA CYS 41 3.968 -4.396 -4.570 1.00 0.34 C ATOM 658 C CYS 41 4.270 -5.105 -5.885 1.00 0.34 C ATOM 659 O CYS 41 4.247 -4.459 -6.933 1.00 0.34 O ATOM 660 OXT CYS 41 4.980 -6.117 -5.831 1.00 0.34 O ATOM 661 CB CYS 41 2.712 -4.973 -3.925 1.00 0.34 C ATOM 662 SG CYS 41 2.361 -4.141 -2.346 1.00 0.34 S TER END