####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS335_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.24 2.24 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 12 - 41 2.00 2.46 LCS_AVERAGE: 69.60 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 18 - 41 0.88 3.41 LCS_AVERAGE: 48.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 20 41 3 3 4 6 16 16 17 35 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 25 41 7 11 14 25 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 25 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 15 25 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 15 25 41 7 13 14 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 15 25 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 15 25 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 15 25 41 7 13 14 20 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 15 25 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 15 25 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 15 25 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 15 30 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 15 30 41 7 13 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 15 30 41 7 13 15 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 15 30 41 7 13 14 24 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 15 30 41 3 4 5 14 17 34 37 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 4 30 41 3 10 16 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 24 30 41 6 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 24 30 41 5 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 24 30 41 4 21 23 24 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 24 30 41 4 21 23 24 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 24 30 41 6 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 24 30 41 7 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 24 30 41 3 21 23 24 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 24 30 41 5 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 24 30 41 5 7 23 24 34 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 24 30 41 5 12 23 24 24 28 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 24 30 41 5 21 23 24 34 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 24 30 41 7 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 24 30 41 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 24 30 41 5 14 20 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 72.56 ( 48.07 69.60 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 21 23 26 35 38 39 39 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 26.83 51.22 56.10 63.41 85.37 92.68 95.12 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.38 0.65 0.77 1.50 1.86 1.96 2.02 2.02 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 GDT RMS_ALL_AT 3.27 3.35 3.44 2.53 2.28 2.26 2.26 2.26 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 2.24 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 5.148 0 0.383 0.391 7.974 0.455 0.303 7.974 LGA Q 2 Q 2 2.325 0 0.208 1.372 4.708 41.818 37.778 3.646 LGA E 3 E 3 1.417 0 0.043 1.508 7.119 61.818 34.343 7.061 LGA T 4 T 4 1.870 0 0.030 1.146 4.749 48.182 35.844 3.336 LGA R 5 R 5 2.311 0 0.044 1.413 8.632 35.455 16.364 8.632 LGA K 6 K 6 2.043 0 0.040 1.188 5.080 41.364 26.465 5.080 LGA K 7 K 7 2.024 0 0.032 0.685 2.498 41.364 41.010 1.769 LGA C 8 C 8 2.762 0 0.099 0.811 4.951 35.455 26.970 4.951 LGA T 9 T 9 2.088 0 0.038 0.085 2.292 44.545 41.818 2.202 LGA E 10 E 10 2.063 0 0.047 0.507 3.994 41.364 32.929 3.994 LGA M 11 M 11 2.223 0 0.114 0.950 3.717 41.364 36.591 3.717 LGA K 12 K 12 1.611 0 0.026 0.626 2.620 50.909 44.040 2.465 LGA K 13 K 13 1.646 0 0.160 0.598 3.204 54.545 46.465 1.365 LGA K 14 K 14 1.999 0 0.038 0.602 3.560 44.545 33.333 2.951 LGA F 15 F 15 2.402 0 0.396 0.465 3.035 30.455 35.372 2.133 LGA K 16 K 16 4.745 0 0.681 1.352 9.178 4.545 2.020 9.178 LGA N 17 N 17 1.780 0 0.366 0.532 5.421 55.455 32.045 3.753 LGA C 18 C 18 1.606 0 0.121 0.911 4.588 54.545 41.212 4.588 LGA E 19 E 19 1.688 0 0.256 0.824 3.665 58.182 43.030 3.665 LGA V 20 V 20 2.161 0 0.060 0.081 2.785 38.182 33.506 2.775 LGA R 21 R 21 1.979 0 0.113 1.303 3.542 44.545 39.835 3.542 LGA C 22 C 22 2.237 0 0.091 0.894 5.438 38.182 31.818 5.438 LGA D 23 D 23 2.531 0 0.359 1.147 5.074 21.364 16.818 3.522 LGA E 24 E 24 2.052 0 0.017 0.886 4.511 41.364 35.152 4.511 LGA S 25 S 25 2.048 0 0.159 0.704 2.915 35.455 34.545 2.915 LGA N 26 N 26 2.018 0 0.171 1.167 6.092 41.364 29.773 6.092 LGA H 27 H 27 2.713 0 0.062 0.302 5.426 32.727 15.818 5.318 LGA C 28 C 28 1.638 0 0.175 0.754 2.909 47.727 50.000 2.909 LGA V 29 V 29 1.871 0 0.079 0.118 2.374 50.909 45.455 2.374 LGA E 30 E 30 1.415 0 0.063 0.699 1.955 61.818 60.606 1.955 LGA V 31 V 31 1.425 0 0.069 0.121 2.090 65.455 57.403 1.995 LGA R 32 R 32 1.484 0 0.163 1.174 8.356 49.091 30.083 8.356 LGA C 33 C 33 2.701 0 0.552 0.623 4.429 22.273 20.909 3.296 LGA S 34 S 34 3.506 0 0.200 0.567 3.948 14.545 16.061 2.655 LGA D 35 D 35 2.618 0 0.171 0.939 3.951 35.909 29.773 3.951 LGA T 36 T 36 1.329 0 0.044 0.169 1.919 58.182 61.299 1.326 LGA K 37 K 37 1.040 0 0.049 1.162 2.381 65.909 59.798 2.381 LGA Y 38 Y 38 1.371 0 0.022 1.290 3.264 65.455 52.727 3.264 LGA T 39 T 39 0.907 0 0.113 0.113 1.494 81.818 74.805 1.494 LGA L 40 L 40 1.532 0 0.158 0.268 2.416 58.182 49.773 2.416 LGA C 41 C 41 1.930 0 0.041 0.716 4.847 50.909 42.078 4.847 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.239 2.284 2.981 44.091 36.487 21.064 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 39 2.02 77.439 80.762 1.837 LGA_LOCAL RMSD: 2.023 Number of atoms: 39 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.256 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.239 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.773581 * X + 0.269646 * Y + -0.573466 * Z + -2.806390 Y_new = 0.355745 * X + -0.564112 * Y + -0.745133 * Z + 1.625451 Z_new = -0.524421 * X + -0.780428 * Y + 0.340461 * Z + 6.944692 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.710563 0.552036 -1.159436 [DEG: 155.3038 31.6293 -66.4308 ] ZXZ: -0.655938 1.223389 -2.549930 [DEG: -37.5825 70.0950 -146.1002 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS335_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 39 2.02 80.762 2.24 REMARK ---------------------------------------------------------- MOLECULE T0955TS335_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -3.533 -11.140 -0.238 1.00 0.40 N ATOM 2 CA SER 1 -2.292 -10.537 -0.688 1.00 0.40 C ATOM 3 C SER 1 -1.540 -9.858 0.456 1.00 0.40 C ATOM 4 O SER 1 -1.198 -8.673 0.374 1.00 0.40 O ATOM 5 CB SER 1 -2.614 -9.531 -1.769 1.00 0.40 C ATOM 6 OG SER 1 -3.239 -10.176 -2.839 1.00 0.40 O ATOM 14 N GLN 2 -1.231 -10.617 1.517 1.00 0.07 N ATOM 15 CA GLN 2 -0.547 -10.030 2.674 1.00 0.07 C ATOM 16 C GLN 2 0.866 -9.562 2.362 1.00 0.07 C ATOM 17 O GLN 2 1.328 -8.559 2.906 1.00 0.07 O ATOM 18 CB GLN 2 -0.506 -11.016 3.841 1.00 0.07 C ATOM 19 CG GLN 2 -1.863 -11.303 4.467 1.00 0.07 C ATOM 20 CD GLN 2 -2.498 -10.040 5.035 1.00 0.07 C ATOM 21 OE1 GLN 2 -1.798 -9.208 5.637 1.00 0.07 O ATOM 22 NE2 GLN 2 -3.813 -9.894 4.856 1.00 0.07 N ATOM 31 N GLU 3 1.564 -10.247 1.466 1.00 0.12 N ATOM 32 CA GLU 3 2.921 -9.809 1.180 1.00 0.12 C ATOM 33 C GLU 3 2.884 -8.432 0.526 1.00 0.12 C ATOM 34 O GLU 3 3.726 -7.575 0.805 1.00 0.12 O ATOM 35 CB GLU 3 3.642 -10.816 0.283 1.00 0.12 C ATOM 36 CG GLU 3 3.948 -12.166 0.959 1.00 0.12 C ATOM 37 CD GLU 3 4.906 -12.058 2.138 1.00 0.12 C ATOM 38 OE1 GLU 3 5.960 -11.494 1.978 1.00 0.12 O ATOM 39 OE2 GLU 3 4.566 -12.532 3.210 1.00 0.12 O ATOM 46 N THR 4 1.877 -8.208 -0.313 1.00 0.05 N ATOM 47 CA THR 4 1.769 -6.933 -0.987 1.00 0.05 C ATOM 48 C THR 4 1.410 -5.869 0.036 1.00 0.05 C ATOM 49 O THR 4 1.963 -4.766 0.035 1.00 0.05 O ATOM 50 CB THR 4 0.710 -6.932 -2.072 1.00 0.05 C ATOM 51 OG1 THR 4 0.987 -7.946 -3.047 1.00 0.05 O ATOM 52 CG2 THR 4 0.775 -5.597 -2.736 1.00 0.05 C ATOM 60 N ARG 5 0.468 -6.200 0.920 1.00 0.26 N ATOM 61 CA ARG 5 0.031 -5.246 1.923 1.00 0.26 C ATOM 62 C ARG 5 1.246 -4.802 2.747 1.00 0.26 C ATOM 63 O ARG 5 1.395 -3.612 3.042 1.00 0.26 O ATOM 64 CB ARG 5 -1.059 -5.840 2.805 1.00 0.26 C ATOM 65 CG ARG 5 -1.746 -4.838 3.742 1.00 0.26 C ATOM 66 CD ARG 5 -2.830 -5.477 4.559 1.00 0.26 C ATOM 67 NE ARG 5 -2.310 -6.397 5.562 1.00 0.26 N ATOM 68 CZ ARG 5 -1.849 -6.049 6.770 1.00 0.26 C ATOM 69 NH1 ARG 5 -1.847 -4.795 7.172 1.00 0.26 N ATOM 70 NH2 ARG 5 -1.405 -7.008 7.541 1.00 0.26 N ATOM 84 N LYS 6 2.129 -5.743 3.104 1.00 0.49 N ATOM 85 CA LYS 6 3.341 -5.398 3.846 1.00 0.49 C ATOM 86 C LYS 6 4.260 -4.460 3.041 1.00 0.49 C ATOM 87 O LYS 6 4.831 -3.521 3.604 1.00 0.49 O ATOM 88 CB LYS 6 4.077 -6.661 4.292 1.00 0.49 C ATOM 89 CG LYS 6 3.363 -7.418 5.431 1.00 0.49 C ATOM 90 CD LYS 6 4.208 -8.562 5.977 1.00 0.49 C ATOM 91 CE LYS 6 4.249 -9.710 4.989 1.00 0.49 C ATOM 92 NZ LYS 6 4.963 -10.908 5.518 1.00 0.49 N ATOM 106 N LYS 7 4.360 -4.653 1.716 1.00 0.62 N ATOM 107 CA LYS 7 5.176 -3.754 0.883 1.00 0.62 C ATOM 108 C LYS 7 4.594 -2.338 0.951 1.00 0.62 C ATOM 109 O LYS 7 5.312 -1.329 0.984 1.00 0.62 O ATOM 110 CB LYS 7 5.160 -4.201 -0.587 1.00 0.62 C ATOM 111 CG LYS 7 5.881 -5.498 -0.903 1.00 0.62 C ATOM 112 CD LYS 7 5.685 -5.884 -2.380 1.00 0.62 C ATOM 113 CE LYS 7 6.293 -7.248 -2.694 1.00 0.62 C ATOM 114 NZ LYS 7 5.992 -7.685 -4.096 1.00 0.62 N ATOM 128 N CYS 8 3.268 -2.278 0.992 1.00 0.42 N ATOM 129 CA CYS 8 2.562 -1.016 1.012 1.00 0.42 C ATOM 130 C CYS 8 2.589 -0.402 2.403 1.00 0.42 C ATOM 131 O CYS 8 2.569 0.823 2.552 1.00 0.42 O ATOM 132 CB CYS 8 1.150 -1.279 0.591 1.00 0.42 C ATOM 133 SG CYS 8 1.106 -1.916 -1.030 1.00 0.42 S ATOM 139 N THR 9 2.704 -1.254 3.420 1.00 0.29 N ATOM 140 CA THR 9 2.815 -0.815 4.794 1.00 0.29 C ATOM 141 C THR 9 4.136 -0.077 4.931 1.00 0.29 C ATOM 142 O THR 9 4.200 0.978 5.562 1.00 0.29 O ATOM 143 CB THR 9 2.733 -1.980 5.783 1.00 0.29 C ATOM 144 OG1 THR 9 1.457 -2.639 5.639 1.00 0.29 O ATOM 145 CG2 THR 9 2.893 -1.460 7.191 1.00 0.29 C ATOM 153 N GLU 10 5.194 -0.631 4.326 1.00 0.05 N ATOM 154 CA GLU 10 6.483 0.043 4.349 1.00 0.05 C ATOM 155 C GLU 10 6.317 1.454 3.786 1.00 0.05 C ATOM 156 O GLU 10 6.751 2.424 4.416 1.00 0.05 O ATOM 157 CB GLU 10 7.529 -0.728 3.536 1.00 0.05 C ATOM 158 CG GLU 10 8.910 -0.084 3.517 1.00 0.05 C ATOM 159 CD GLU 10 9.942 -0.864 2.707 1.00 0.05 C ATOM 160 OE1 GLU 10 9.629 -1.916 2.206 1.00 0.05 O ATOM 161 OE2 GLU 10 11.056 -0.382 2.597 1.00 0.05 O ATOM 168 N MET 11 5.623 1.583 2.641 1.00 0.21 N ATOM 169 CA MET 11 5.397 2.928 2.121 1.00 0.21 C ATOM 170 C MET 11 4.639 3.781 3.126 1.00 0.21 C ATOM 171 O MET 11 5.064 4.890 3.431 1.00 0.21 O ATOM 172 CB MET 11 4.616 2.945 0.802 1.00 0.21 C ATOM 173 CG MET 11 5.351 2.436 -0.407 1.00 0.21 C ATOM 174 SD MET 11 4.333 2.505 -1.890 1.00 0.21 S ATOM 175 CE MET 11 5.576 2.371 -3.150 1.00 0.21 C ATOM 185 N LYS 12 3.595 3.232 3.736 1.00 0.24 N ATOM 186 CA LYS 12 2.814 3.988 4.708 1.00 0.24 C ATOM 187 C LYS 12 3.674 4.528 5.849 1.00 0.24 C ATOM 188 O LYS 12 3.454 5.640 6.332 1.00 0.24 O ATOM 189 CB LYS 12 1.654 3.150 5.230 1.00 0.24 C ATOM 190 CG LYS 12 0.701 3.900 6.129 1.00 0.24 C ATOM 191 CD LYS 12 -0.488 3.037 6.504 1.00 0.24 C ATOM 192 CE LYS 12 -1.439 3.785 7.424 1.00 0.24 C ATOM 193 NZ LYS 12 -2.618 2.954 7.795 1.00 0.24 N ATOM 207 N LYS 13 4.661 3.747 6.278 1.00 0.72 N ATOM 208 CA LYS 13 5.551 4.166 7.350 1.00 0.72 C ATOM 209 C LYS 13 6.646 5.156 6.901 1.00 0.72 C ATOM 210 O LYS 13 7.262 5.812 7.745 1.00 0.72 O ATOM 211 CB LYS 13 6.186 2.938 8.001 1.00 0.72 C ATOM 212 CG LYS 13 5.200 2.062 8.785 1.00 0.72 C ATOM 213 CD LYS 13 5.894 0.856 9.402 1.00 0.72 C ATOM 214 CE LYS 13 4.929 0.031 10.247 1.00 0.72 C ATOM 215 NZ LYS 13 5.594 -1.162 10.845 1.00 0.72 N ATOM 229 N LYS 14 6.909 5.253 5.591 1.00 0.94 N ATOM 230 CA LYS 14 7.961 6.131 5.073 1.00 0.94 C ATOM 231 C LYS 14 7.456 7.410 4.387 1.00 0.94 C ATOM 232 O LYS 14 8.145 8.433 4.401 1.00 0.94 O ATOM 233 CB LYS 14 8.873 5.334 4.144 1.00 0.94 C ATOM 234 CG LYS 14 9.667 4.265 4.892 1.00 0.94 C ATOM 235 CD LYS 14 10.607 3.486 3.999 1.00 0.94 C ATOM 236 CE LYS 14 11.449 2.525 4.840 1.00 0.94 C ATOM 237 NZ LYS 14 12.340 1.668 4.014 1.00 0.94 N ATOM 251 N PHE 15 6.270 7.368 3.798 1.00 0.21 N ATOM 252 CA PHE 15 5.713 8.521 3.096 1.00 0.21 C ATOM 253 C PHE 15 4.718 9.285 3.955 1.00 0.21 C ATOM 254 O PHE 15 3.906 8.704 4.673 1.00 0.21 O ATOM 255 CB PHE 15 4.991 8.095 1.822 1.00 0.21 C ATOM 256 CG PHE 15 5.846 7.647 0.664 1.00 0.21 C ATOM 257 CD1 PHE 15 6.279 6.348 0.558 1.00 0.21 C ATOM 258 CD2 PHE 15 6.168 8.531 -0.354 1.00 0.21 C ATOM 259 CE1 PHE 15 7.014 5.929 -0.529 1.00 0.21 C ATOM 260 CE2 PHE 15 6.899 8.115 -1.446 1.00 0.21 C ATOM 261 CZ PHE 15 7.320 6.811 -1.532 1.00 0.21 C ATOM 271 N LYS 16 4.744 10.606 3.845 1.00 0.09 N ATOM 272 CA LYS 16 3.790 11.429 4.571 1.00 0.09 C ATOM 273 C LYS 16 2.435 11.367 3.890 1.00 0.09 C ATOM 274 O LYS 16 2.363 11.283 2.664 1.00 0.09 O ATOM 275 CB LYS 16 4.272 12.876 4.643 1.00 0.09 C ATOM 276 CG LYS 16 5.536 13.079 5.474 1.00 0.09 C ATOM 277 CD LYS 16 5.943 14.549 5.521 1.00 0.09 C ATOM 278 CE LYS 16 7.209 14.755 6.344 1.00 0.09 C ATOM 279 NZ LYS 16 7.628 16.184 6.372 1.00 0.09 N ATOM 293 N ASN 17 1.363 11.433 4.683 1.00 0.45 N ATOM 294 CA ASN 17 0.003 11.450 4.143 1.00 0.45 C ATOM 295 C ASN 17 -0.261 10.274 3.197 1.00 0.45 C ATOM 296 O ASN 17 -0.812 10.451 2.101 1.00 0.45 O ATOM 297 CB ASN 17 -0.282 12.786 3.479 1.00 0.45 C ATOM 298 CG ASN 17 -0.261 13.924 4.487 1.00 0.45 C ATOM 299 OD1 ASN 17 -0.826 13.799 5.580 1.00 0.45 O ATOM 300 ND2 ASN 17 0.381 15.014 4.150 1.00 0.45 N ATOM 307 N CYS 18 0.172 9.079 3.615 1.00 0.70 N ATOM 308 CA CYS 18 -0.003 7.879 2.814 1.00 0.70 C ATOM 309 C CYS 18 -1.169 6.973 3.217 1.00 0.70 C ATOM 310 O CYS 18 -1.343 6.633 4.391 1.00 0.70 O ATOM 311 CB CYS 18 1.274 7.064 2.778 1.00 0.70 C ATOM 312 SG CYS 18 1.106 5.511 1.837 1.00 0.70 S ATOM 318 N GLU 19 -1.966 6.595 2.213 1.00 0.36 N ATOM 319 CA GLU 19 -3.111 5.705 2.387 1.00 0.36 C ATOM 320 C GLU 19 -2.929 4.413 1.585 1.00 0.36 C ATOM 321 O GLU 19 -2.400 4.422 0.471 1.00 0.36 O ATOM 322 CB GLU 19 -4.404 6.402 1.952 1.00 0.36 C ATOM 323 CG GLU 19 -4.791 7.620 2.799 1.00 0.36 C ATOM 324 CD GLU 19 -6.078 8.288 2.341 1.00 0.36 C ATOM 325 OE1 GLU 19 -6.633 7.862 1.356 1.00 0.36 O ATOM 326 OE2 GLU 19 -6.497 9.222 2.983 1.00 0.36 O ATOM 333 N VAL 20 -3.388 3.295 2.147 1.00 0.49 N ATOM 334 CA VAL 20 -3.267 1.997 1.480 1.00 0.49 C ATOM 335 C VAL 20 -4.618 1.265 1.356 1.00 0.49 C ATOM 336 O VAL 20 -5.330 1.102 2.350 1.00 0.49 O ATOM 337 CB VAL 20 -2.272 1.113 2.271 1.00 0.49 C ATOM 338 CG1 VAL 20 -2.155 -0.218 1.606 1.00 0.49 C ATOM 339 CG2 VAL 20 -0.883 1.812 2.367 1.00 0.49 C ATOM 349 N ARG 21 -4.956 0.806 0.140 1.00 0.77 N ATOM 350 CA ARG 21 -6.199 0.065 -0.115 1.00 0.77 C ATOM 351 C ARG 21 -5.940 -1.333 -0.673 1.00 0.77 C ATOM 352 O ARG 21 -5.565 -1.499 -1.839 1.00 0.77 O ATOM 353 CB ARG 21 -7.072 0.786 -1.131 1.00 0.77 C ATOM 354 CG ARG 21 -8.415 0.091 -1.438 1.00 0.77 C ATOM 355 CD ARG 21 -9.258 0.853 -2.441 1.00 0.77 C ATOM 356 NE ARG 21 -8.685 0.812 -3.809 1.00 0.77 N ATOM 357 CZ ARG 21 -8.945 -0.144 -4.735 1.00 0.77 C ATOM 358 NH1 ARG 21 -9.768 -1.142 -4.491 1.00 0.77 N ATOM 359 NH2 ARG 21 -8.352 -0.054 -5.898 1.00 0.77 N ATOM 373 N CYS 22 -6.115 -2.357 0.152 1.00 0.91 N ATOM 374 CA CYS 22 -5.836 -3.712 -0.317 1.00 0.91 C ATOM 375 C CYS 22 -7.009 -4.279 -1.095 1.00 0.91 C ATOM 376 O CYS 22 -8.137 -4.266 -0.601 1.00 0.91 O ATOM 377 CB CYS 22 -5.470 -4.649 0.834 1.00 0.91 C ATOM 378 SG CYS 22 -5.066 -6.342 0.292 1.00 0.91 S ATOM 384 N ASP 23 -6.761 -4.759 -2.315 1.00 0.89 N ATOM 385 CA ASP 23 -7.830 -5.286 -3.145 1.00 0.89 C ATOM 386 C ASP 23 -7.497 -6.639 -3.748 1.00 0.89 C ATOM 387 O ASP 23 -6.898 -6.769 -4.827 1.00 0.89 O ATOM 388 CB ASP 23 -8.146 -4.300 -4.243 1.00 0.89 C ATOM 389 CG ASP 23 -9.300 -4.724 -5.153 1.00 0.89 C ATOM 390 OD1 ASP 23 -9.757 -5.880 -5.097 1.00 0.89 O ATOM 391 OD2 ASP 23 -9.738 -3.874 -5.912 1.00 0.89 O ATOM 396 N GLU 24 -8.015 -7.662 -3.100 1.00 0.55 N ATOM 397 CA GLU 24 -7.737 -9.024 -3.488 1.00 0.55 C ATOM 398 C GLU 24 -8.288 -9.343 -4.883 1.00 0.55 C ATOM 399 O GLU 24 -7.737 -10.193 -5.584 1.00 0.55 O ATOM 400 CB GLU 24 -8.368 -9.986 -2.478 1.00 0.55 C ATOM 401 CG GLU 24 -7.803 -9.915 -1.048 1.00 0.55 C ATOM 402 CD GLU 24 -6.352 -10.277 -0.889 1.00 0.55 C ATOM 403 OE1 GLU 24 -5.752 -10.887 -1.758 1.00 0.55 O ATOM 404 OE2 GLU 24 -5.798 -9.962 0.146 1.00 0.55 O ATOM 411 N SER 25 -9.374 -8.671 -5.306 1.00 0.57 N ATOM 412 CA SER 25 -10.021 -9.045 -6.562 1.00 0.57 C ATOM 413 C SER 25 -9.235 -8.578 -7.774 1.00 0.57 C ATOM 414 O SER 25 -9.489 -9.027 -8.894 1.00 0.57 O ATOM 415 CB SER 25 -11.455 -8.528 -6.626 1.00 0.57 C ATOM 416 OG SER 25 -11.521 -7.135 -6.773 1.00 0.57 O ATOM 422 N ASN 26 -8.279 -7.676 -7.557 1.00 0.32 N ATOM 423 CA ASN 26 -7.431 -7.210 -8.633 1.00 0.32 C ATOM 424 C ASN 26 -5.997 -7.654 -8.393 1.00 0.32 C ATOM 425 O ASN 26 -5.068 -7.164 -9.040 1.00 0.32 O ATOM 426 CB ASN 26 -7.554 -5.704 -8.823 1.00 0.32 C ATOM 427 CG ASN 26 -8.886 -5.293 -9.458 1.00 0.32 C ATOM 428 OD1 ASN 26 -9.040 -5.505 -10.669 1.00 0.32 O ATOM 429 ND2 ASN 26 -9.816 -4.719 -8.723 1.00 0.32 N ATOM 436 N HIS 27 -5.818 -8.578 -7.437 1.00 0.12 N ATOM 437 CA HIS 27 -4.516 -9.119 -7.068 1.00 0.12 C ATOM 438 C HIS 27 -3.494 -8.021 -6.792 1.00 0.12 C ATOM 439 O HIS 27 -2.340 -8.130 -7.217 1.00 0.12 O ATOM 440 CB HIS 27 -4.003 -10.033 -8.178 1.00 0.12 C ATOM 441 CG HIS 27 -4.963 -11.128 -8.507 1.00 0.12 C ATOM 442 ND1 HIS 27 -5.227 -12.174 -7.647 1.00 0.12 N ATOM 443 CD2 HIS 27 -5.733 -11.330 -9.600 1.00 0.12 C ATOM 444 CE1 HIS 27 -6.117 -12.976 -8.206 1.00 0.12 C ATOM 445 NE2 HIS 27 -6.437 -12.487 -9.391 1.00 0.12 N ATOM 453 N CYS 28 -3.905 -6.957 -6.103 1.00 0.74 N ATOM 454 CA CYS 28 -2.985 -5.852 -5.860 1.00 0.74 C ATOM 455 C CYS 28 -3.415 -4.935 -4.734 1.00 0.74 C ATOM 456 O CYS 28 -4.524 -5.056 -4.202 1.00 0.74 O ATOM 457 CB CYS 28 -2.827 -5.017 -7.135 1.00 0.74 C ATOM 458 SG CYS 28 -4.355 -4.238 -7.686 1.00 0.74 S ATOM 464 N VAL 29 -2.525 -4.016 -4.386 1.00 0.84 N ATOM 465 CA VAL 29 -2.822 -3.001 -3.396 1.00 0.84 C ATOM 466 C VAL 29 -2.564 -1.598 -3.966 1.00 0.84 C ATOM 467 O VAL 29 -1.526 -1.332 -4.591 1.00 0.84 O ATOM 468 CB VAL 29 -1.975 -3.235 -2.142 1.00 0.84 C ATOM 469 CG1 VAL 29 -2.268 -2.179 -1.117 1.00 0.84 C ATOM 470 CG2 VAL 29 -2.230 -4.632 -1.558 1.00 0.84 C ATOM 480 N GLU 30 -3.540 -0.710 -3.791 1.00 0.67 N ATOM 481 CA GLU 30 -3.417 0.667 -4.263 1.00 0.67 C ATOM 482 C GLU 30 -2.837 1.554 -3.180 1.00 0.67 C ATOM 483 O GLU 30 -3.309 1.540 -2.038 1.00 0.67 O ATOM 484 CB GLU 30 -4.776 1.229 -4.710 1.00 0.67 C ATOM 485 CG GLU 30 -4.710 2.674 -5.211 1.00 0.67 C ATOM 486 CD GLU 30 -6.046 3.269 -5.658 1.00 0.67 C ATOM 487 OE1 GLU 30 -7.046 2.579 -5.681 1.00 0.67 O ATOM 488 OE2 GLU 30 -6.054 4.443 -5.967 1.00 0.67 O ATOM 495 N VAL 31 -1.801 2.312 -3.521 1.00 0.24 N ATOM 496 CA VAL 31 -1.201 3.190 -2.535 1.00 0.24 C ATOM 497 C VAL 31 -1.152 4.635 -2.985 1.00 0.24 C ATOM 498 O VAL 31 -0.727 4.959 -4.095 1.00 0.24 O ATOM 499 CB VAL 31 0.212 2.722 -2.166 1.00 0.24 C ATOM 500 CG1 VAL 31 0.813 3.678 -1.170 1.00 0.24 C ATOM 501 CG2 VAL 31 0.140 1.362 -1.606 1.00 0.24 C ATOM 511 N ARG 32 -1.601 5.517 -2.113 1.00 0.81 N ATOM 512 CA ARG 32 -1.541 6.933 -2.399 1.00 0.81 C ATOM 513 C ARG 32 -0.618 7.609 -1.424 1.00 0.81 C ATOM 514 O ARG 32 -0.818 7.525 -0.219 1.00 0.81 O ATOM 515 CB ARG 32 -2.903 7.587 -2.297 1.00 0.81 C ATOM 516 CG ARG 32 -2.875 9.091 -2.531 1.00 0.81 C ATOM 517 CD ARG 32 -4.219 9.708 -2.438 1.00 0.81 C ATOM 518 NE ARG 32 -4.142 11.153 -2.562 1.00 0.81 N ATOM 519 CZ ARG 32 -5.201 11.986 -2.578 1.00 0.81 C ATOM 520 NH1 ARG 32 -6.427 11.508 -2.484 1.00 0.81 N ATOM 521 NH2 ARG 32 -5.004 13.285 -2.688 1.00 0.81 N ATOM 535 N CYS 33 0.409 8.265 -1.931 1.00 0.91 N ATOM 536 CA CYS 33 1.334 8.979 -1.070 1.00 0.91 C ATOM 537 C CYS 33 1.206 10.457 -1.386 1.00 0.91 C ATOM 538 O CYS 33 1.812 10.936 -2.352 1.00 0.91 O ATOM 539 CB CYS 33 2.753 8.504 -1.309 1.00 0.91 C ATOM 540 SG CYS 33 3.002 6.710 -1.013 1.00 0.91 S ATOM 546 N SER 34 0.379 11.180 -0.629 1.00 0.06 N ATOM 547 CA SER 34 0.084 12.564 -0.983 1.00 0.06 C ATOM 548 C SER 34 -0.385 12.676 -2.452 1.00 0.06 C ATOM 549 O SER 34 -1.499 12.260 -2.790 1.00 0.06 O ATOM 550 CB SER 34 1.283 13.457 -0.699 1.00 0.06 C ATOM 551 OG SER 34 0.920 14.818 -0.749 1.00 0.06 O ATOM 557 N ASP 35 0.454 13.252 -3.317 1.00 0.84 N ATOM 558 CA ASP 35 0.099 13.478 -4.718 1.00 0.84 C ATOM 559 C ASP 35 0.501 12.355 -5.697 1.00 0.84 C ATOM 560 O ASP 35 0.247 12.478 -6.900 1.00 0.84 O ATOM 561 CB ASP 35 0.731 14.785 -5.194 1.00 0.84 C ATOM 562 CG ASP 35 0.194 15.990 -4.447 1.00 0.84 C ATOM 563 OD1 ASP 35 -0.890 15.901 -3.920 1.00 0.84 O ATOM 564 OD2 ASP 35 0.872 16.979 -4.389 1.00 0.84 O ATOM 569 N THR 36 1.134 11.279 -5.211 1.00 0.28 N ATOM 570 CA THR 36 1.566 10.209 -6.117 1.00 0.28 C ATOM 571 C THR 36 0.871 8.861 -5.888 1.00 0.28 C ATOM 572 O THR 36 0.797 8.343 -4.770 1.00 0.28 O ATOM 573 CB THR 36 3.091 10.006 -6.041 1.00 0.28 C ATOM 574 OG1 THR 36 3.751 11.223 -6.425 1.00 0.28 O ATOM 575 CG2 THR 36 3.527 8.883 -6.991 1.00 0.28 C ATOM 583 N LYS 37 0.368 8.293 -6.980 1.00 0.99 N ATOM 584 CA LYS 37 -0.300 6.994 -6.966 1.00 0.99 C ATOM 585 C LYS 37 0.627 5.850 -7.365 1.00 0.99 C ATOM 586 O LYS 37 1.334 5.937 -8.372 1.00 0.99 O ATOM 587 CB LYS 37 -1.519 7.011 -7.887 1.00 0.99 C ATOM 588 CG LYS 37 -2.302 5.703 -7.919 1.00 0.99 C ATOM 589 CD LYS 37 -3.553 5.826 -8.778 1.00 0.99 C ATOM 590 CE LYS 37 -4.269 4.496 -8.886 1.00 0.99 C ATOM 591 NZ LYS 37 -5.554 4.617 -9.615 1.00 0.99 N ATOM 605 N TYR 38 0.600 4.776 -6.579 1.00 0.66 N ATOM 606 CA TYR 38 1.379 3.580 -6.850 1.00 0.66 C ATOM 607 C TYR 38 0.473 2.346 -6.871 1.00 0.66 C ATOM 608 O TYR 38 -0.527 2.279 -6.149 1.00 0.66 O ATOM 609 CB TYR 38 2.419 3.351 -5.750 1.00 0.66 C ATOM 610 CG TYR 38 3.414 4.443 -5.524 1.00 0.66 C ATOM 611 CD1 TYR 38 3.103 5.489 -4.667 1.00 0.66 C ATOM 612 CD2 TYR 38 4.647 4.398 -6.145 1.00 0.66 C ATOM 613 CE1 TYR 38 4.032 6.478 -4.443 1.00 0.66 C ATOM 614 CE2 TYR 38 5.571 5.392 -5.911 1.00 0.66 C ATOM 615 CZ TYR 38 5.265 6.427 -5.064 1.00 0.66 C ATOM 616 OH TYR 38 6.186 7.422 -4.840 1.00 0.66 O ATOM 626 N THR 39 0.841 1.347 -7.662 1.00 0.07 N ATOM 627 CA THR 39 0.143 0.067 -7.582 1.00 0.07 C ATOM 628 C THR 39 1.181 -0.991 -7.287 1.00 0.07 C ATOM 629 O THR 39 2.198 -1.081 -7.980 1.00 0.07 O ATOM 630 CB THR 39 -0.634 -0.284 -8.861 1.00 0.07 C ATOM 631 OG1 THR 39 -1.607 0.736 -9.122 1.00 0.07 O ATOM 632 CG2 THR 39 -1.358 -1.634 -8.661 1.00 0.07 C ATOM 640 N LEU 40 0.941 -1.768 -6.245 1.00 0.36 N ATOM 641 CA LEU 40 1.893 -2.779 -5.840 1.00 0.36 C ATOM 642 C LEU 40 1.312 -4.172 -5.874 1.00 0.36 C ATOM 643 O LEU 40 0.118 -4.377 -5.642 1.00 0.36 O ATOM 644 CB LEU 40 2.400 -2.478 -4.430 1.00 0.36 C ATOM 645 CG LEU 40 3.317 -1.244 -4.289 1.00 0.36 C ATOM 646 CD1 LEU 40 2.468 0.009 -4.093 1.00 0.36 C ATOM 647 CD2 LEU 40 4.262 -1.458 -3.108 1.00 0.36 C ATOM 659 N CYS 41 2.174 -5.133 -6.164 1.00 0.41 N ATOM 660 CA CYS 41 1.818 -6.542 -6.158 1.00 0.41 C ATOM 661 C CYS 41 3.065 -7.329 -5.752 1.00 0.41 C ATOM 662 O CYS 41 3.210 -7.680 -4.578 1.00 0.41 O ATOM 663 OXT CYS 41 4.077 -7.171 -6.432 1.00 0.41 O ATOM 664 CB CYS 41 1.309 -6.986 -7.532 1.00 0.41 C ATOM 665 SG CYS 41 0.738 -8.705 -7.605 1.00 0.41 S TER END