####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS335_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 3.01 3.01 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 16 - 41 1.99 4.05 LCS_AVERAGE: 54.49 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 18 - 35 0.95 4.84 LCS_AVERAGE: 31.65 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 16 41 4 4 5 10 10 14 20 26 29 36 40 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 10 16 41 8 9 9 15 16 23 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 10 16 41 8 9 9 15 21 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 10 16 41 8 9 9 18 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 10 16 41 8 9 9 15 19 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 10 16 41 8 9 9 15 21 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 10 16 41 8 9 9 17 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 10 16 41 8 9 9 15 21 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 10 16 41 8 9 9 15 21 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 10 16 41 4 9 9 15 21 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 10 16 41 5 6 9 15 21 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 7 16 41 5 6 9 15 21 26 32 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 7 16 41 5 6 9 15 21 26 31 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 7 16 41 5 6 9 15 21 26 32 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 7 16 41 5 6 9 15 21 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 6 26 41 3 4 6 15 16 25 32 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 4 26 41 3 11 18 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 18 26 41 9 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 18 26 41 3 18 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 18 26 41 4 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 18 26 41 4 13 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 18 26 41 7 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 18 26 41 5 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 18 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 18 26 41 9 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 18 26 41 9 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 18 26 41 3 5 8 23 24 25 26 30 37 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 18 26 41 3 19 22 24 24 27 33 37 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 12 26 41 3 12 21 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 12 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 12 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 12 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 12 26 41 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 7 26 41 3 14 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 62.05 ( 31.65 54.49 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 19 22 24 24 27 33 38 39 40 40 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 24.39 46.34 53.66 58.54 58.54 65.85 80.49 92.68 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.28 0.63 0.81 1.05 1.05 1.68 2.41 2.78 2.82 2.91 2.91 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 GDT RMS_ALL_AT 4.73 4.62 4.68 4.42 4.42 3.88 3.23 3.06 3.03 3.02 3.02 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 3.01 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 6.060 0 0.349 0.359 8.101 0.000 0.000 8.101 LGA Q 2 Q 2 3.461 0 0.208 1.394 7.452 20.909 12.525 5.180 LGA E 3 E 3 2.489 0 0.022 1.499 7.596 41.818 20.606 7.596 LGA T 4 T 4 1.043 0 0.030 1.116 3.978 61.818 48.831 3.180 LGA R 5 R 5 2.371 0 0.056 1.418 9.344 38.636 15.868 8.581 LGA K 6 K 6 1.927 0 0.016 1.277 8.263 58.182 30.707 8.263 LGA K 7 K 7 1.256 0 0.040 0.879 3.540 58.182 43.232 2.364 LGA C 8 C 8 2.643 0 0.068 0.735 4.392 33.182 26.061 4.392 LGA T 9 T 9 2.806 0 0.164 1.082 3.868 32.727 25.455 3.263 LGA E 10 E 10 2.168 0 0.077 0.863 4.689 38.182 29.697 4.689 LGA M 11 M 11 2.874 0 0.033 0.584 3.306 22.727 22.727 2.930 LGA K 12 K 12 3.711 0 0.067 0.656 4.507 12.727 12.121 3.150 LGA K 13 K 13 4.198 0 0.198 0.631 5.997 5.455 3.636 5.997 LGA K 14 K 14 3.555 0 0.020 0.637 5.419 14.545 12.121 5.419 LGA F 15 F 15 3.063 0 0.419 0.362 3.477 18.182 19.008 3.444 LGA K 16 K 16 4.074 0 0.655 1.345 8.851 16.364 7.273 8.851 LGA N 17 N 17 2.082 0 0.355 0.575 5.542 42.273 23.864 4.187 LGA C 18 C 18 3.395 0 0.084 0.140 4.860 20.455 14.242 4.860 LGA E 19 E 19 3.135 0 0.228 0.464 3.886 25.455 20.606 3.397 LGA V 20 V 20 3.107 0 0.118 1.084 6.122 20.455 20.519 1.759 LGA R 21 R 21 2.614 0 0.013 1.146 6.234 30.000 17.521 6.136 LGA C 22 C 22 3.564 0 0.041 0.173 4.607 14.545 10.909 4.607 LGA D 23 D 23 3.815 0 0.381 1.180 5.893 6.818 6.136 4.142 LGA E 24 E 24 3.398 0 0.025 0.877 3.857 18.182 20.404 3.857 LGA S 25 S 25 3.435 0 0.138 0.697 4.986 16.364 13.030 4.986 LGA N 26 N 26 2.369 0 0.189 1.170 6.736 38.636 25.455 6.736 LGA H 27 H 27 2.938 0 0.061 0.290 5.896 32.727 15.636 5.833 LGA C 28 C 28 1.820 0 0.173 0.771 2.488 44.545 46.970 2.373 LGA V 29 V 29 2.368 0 0.100 0.151 3.476 38.182 29.610 3.476 LGA E 30 E 30 1.690 0 0.024 0.612 3.191 50.909 42.222 2.895 LGA V 31 V 31 2.181 0 0.050 1.161 3.384 41.364 35.584 3.384 LGA R 32 R 32 2.304 0 0.280 1.134 6.036 28.636 21.157 6.036 LGA C 33 C 33 3.110 0 0.496 1.124 4.385 16.818 16.667 2.642 LGA S 34 S 34 5.796 0 0.303 0.600 6.545 0.455 0.303 6.215 LGA D 35 D 35 4.455 0 0.307 0.917 4.760 7.273 9.318 4.724 LGA T 36 T 36 2.205 0 0.240 1.125 3.406 36.364 33.247 3.406 LGA K 37 K 37 2.203 0 0.067 1.131 3.339 35.455 35.556 3.314 LGA Y 38 Y 38 2.402 0 0.013 1.359 3.429 44.545 38.333 3.429 LGA T 39 T 39 1.306 0 0.115 0.113 1.814 54.545 59.221 1.256 LGA L 40 L 40 2.036 0 0.159 1.076 3.437 47.727 34.091 3.437 LGA C 41 C 41 2.240 0 0.485 1.249 4.836 41.364 30.909 4.836 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 3.012 3.007 3.702 29.945 23.204 12.506 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 38 2.78 74.390 71.261 1.321 LGA_LOCAL RMSD: 2.776 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.057 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 3.012 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.938139 * X + 0.344236 * Y + -0.037373 * Z + -0.507366 Y_new = 0.054306 * X + 0.039675 * Y + -0.997736 * Z + 1.609447 Z_new = -0.341973 * X + -0.938045 * Y + -0.055915 * Z + 4.802362 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.083770 0.349016 -1.630334 [DEG: 176.6870 19.9971 -93.4113 ] ZXZ: -0.037441 1.626741 -2.792006 [DEG: -2.1452 93.2054 -159.9702 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS335_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 38 2.78 71.261 3.01 REMARK ---------------------------------------------------------- MOLECULE T0955TS335_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -5.069 -10.433 -0.263 1.00 0.40 N ATOM 2 CA SER 1 -3.653 -10.249 -0.517 1.00 0.40 C ATOM 3 C SER 1 -2.974 -9.462 0.611 1.00 0.40 C ATOM 4 O SER 1 -2.427 -8.374 0.395 1.00 0.40 O ATOM 5 CB SER 1 -3.506 -9.543 -1.844 1.00 0.40 C ATOM 6 OG SER 1 -4.044 -10.343 -2.869 1.00 0.40 O ATOM 14 N GLN 2 -2.970 -10.032 1.822 1.00 0.55 N ATOM 15 CA GLN 2 -2.391 -9.335 2.974 1.00 0.55 C ATOM 16 C GLN 2 -0.882 -9.143 2.903 1.00 0.55 C ATOM 17 O GLN 2 -0.378 -8.124 3.370 1.00 0.55 O ATOM 18 CB GLN 2 -2.760 -10.043 4.274 1.00 0.55 C ATOM 19 CG GLN 2 -4.234 -9.923 4.630 1.00 0.55 C ATOM 20 CD GLN 2 -4.635 -8.459 4.832 1.00 0.55 C ATOM 21 OE1 GLN 2 -3.935 -7.716 5.541 1.00 0.55 O ATOM 22 NE2 GLN 2 -5.749 -8.045 4.223 1.00 0.55 N ATOM 31 N GLU 3 -0.154 -10.080 2.300 1.00 0.36 N ATOM 32 CA GLU 3 1.297 -9.914 2.237 1.00 0.36 C ATOM 33 C GLU 3 1.631 -8.712 1.358 1.00 0.36 C ATOM 34 O GLU 3 2.598 -7.982 1.606 1.00 0.36 O ATOM 35 CB GLU 3 1.970 -11.187 1.727 1.00 0.36 C ATOM 36 CG GLU 3 1.869 -12.374 2.704 1.00 0.36 C ATOM 37 CD GLU 3 2.546 -12.117 4.048 1.00 0.36 C ATOM 38 OE1 GLU 3 3.695 -11.752 4.061 1.00 0.36 O ATOM 39 OE2 GLU 3 1.891 -12.275 5.065 1.00 0.36 O ATOM 46 N THR 4 0.820 -8.507 0.328 1.00 0.10 N ATOM 47 CA THR 4 1.012 -7.391 -0.571 1.00 0.10 C ATOM 48 C THR 4 0.735 -6.102 0.195 1.00 0.10 C ATOM 49 O THR 4 1.464 -5.114 0.058 1.00 0.10 O ATOM 50 CB THR 4 0.130 -7.516 -1.801 1.00 0.10 C ATOM 51 OG1 THR 4 0.451 -8.733 -2.494 1.00 0.10 O ATOM 52 CG2 THR 4 0.392 -6.357 -2.706 1.00 0.10 C ATOM 60 N ARG 5 -0.328 -6.112 1.005 1.00 0.85 N ATOM 61 CA ARG 5 -0.633 -4.950 1.822 1.00 0.85 C ATOM 62 C ARG 5 0.547 -4.652 2.740 1.00 0.85 C ATOM 63 O ARG 5 0.961 -3.500 2.869 1.00 0.85 O ATOM 64 CB ARG 5 -1.899 -5.136 2.647 1.00 0.85 C ATOM 65 CG ARG 5 -2.321 -3.879 3.407 1.00 0.85 C ATOM 66 CD ARG 5 -3.574 -4.063 4.202 1.00 0.85 C ATOM 67 NE ARG 5 -3.408 -4.991 5.295 1.00 0.85 N ATOM 68 CZ ARG 5 -2.862 -4.706 6.486 1.00 0.85 C ATOM 69 NH1 ARG 5 -2.420 -3.499 6.774 1.00 0.85 N ATOM 70 NH2 ARG 5 -2.789 -5.684 7.356 1.00 0.85 N ATOM 84 N LYS 6 1.139 -5.684 3.339 1.00 0.29 N ATOM 85 CA LYS 6 2.271 -5.429 4.218 1.00 0.29 C ATOM 86 C LYS 6 3.377 -4.718 3.437 1.00 0.29 C ATOM 87 O LYS 6 3.957 -3.747 3.933 1.00 0.29 O ATOM 88 CB LYS 6 2.800 -6.738 4.807 1.00 0.29 C ATOM 89 CG LYS 6 1.892 -7.402 5.838 1.00 0.29 C ATOM 90 CD LYS 6 2.473 -8.744 6.279 1.00 0.29 C ATOM 91 CE LYS 6 1.557 -9.476 7.245 1.00 0.29 C ATOM 92 NZ LYS 6 2.072 -10.846 7.554 1.00 0.29 N ATOM 106 N LYS 7 3.616 -5.124 2.178 1.00 0.60 N ATOM 107 CA LYS 7 4.624 -4.435 1.368 1.00 0.60 C ATOM 108 C LYS 7 4.226 -2.969 1.151 1.00 0.60 C ATOM 109 O LYS 7 5.061 -2.069 1.213 1.00 0.60 O ATOM 110 CB LYS 7 4.835 -5.131 0.008 1.00 0.60 C ATOM 111 CG LYS 7 5.540 -6.500 0.096 1.00 0.60 C ATOM 112 CD LYS 7 5.984 -7.053 -1.290 1.00 0.60 C ATOM 113 CE LYS 7 4.809 -7.595 -2.127 1.00 0.60 C ATOM 114 NZ LYS 7 5.280 -8.275 -3.387 1.00 0.60 N ATOM 128 N CYS 8 2.934 -2.704 0.985 1.00 0.84 N ATOM 129 CA CYS 8 2.456 -1.339 0.775 1.00 0.84 C ATOM 130 C CYS 8 2.747 -0.439 1.962 1.00 0.84 C ATOM 131 O CYS 8 3.072 0.740 1.802 1.00 0.84 O ATOM 132 CB CYS 8 0.957 -1.302 0.589 1.00 0.84 C ATOM 133 SG CYS 8 0.375 -2.041 -0.850 1.00 0.84 S ATOM 139 N THR 9 2.693 -1.006 3.168 1.00 0.58 N ATOM 140 CA THR 9 2.897 -0.212 4.372 1.00 0.58 C ATOM 141 C THR 9 4.366 0.181 4.554 1.00 0.58 C ATOM 142 O THR 9 4.689 1.036 5.379 1.00 0.58 O ATOM 143 CB THR 9 2.360 -0.917 5.642 1.00 0.58 C ATOM 144 OG1 THR 9 3.066 -2.149 5.892 1.00 0.58 O ATOM 145 CG2 THR 9 0.848 -1.207 5.467 1.00 0.58 C ATOM 153 N GLU 10 5.265 -0.383 3.735 1.00 0.68 N ATOM 154 CA GLU 10 6.684 -0.038 3.767 1.00 0.68 C ATOM 155 C GLU 10 6.834 1.455 3.455 1.00 0.68 C ATOM 156 O GLU 10 7.779 2.108 3.907 1.00 0.68 O ATOM 157 CB GLU 10 7.475 -0.871 2.754 1.00 0.68 C ATOM 158 CG GLU 10 9.012 -0.782 2.863 1.00 0.68 C ATOM 159 CD GLU 10 9.581 -1.436 4.124 1.00 0.68 C ATOM 160 OE1 GLU 10 8.894 -2.213 4.738 1.00 0.68 O ATOM 161 OE2 GLU 10 10.714 -1.156 4.465 1.00 0.68 O ATOM 168 N MET 11 5.876 2.001 2.682 1.00 0.42 N ATOM 169 CA MET 11 5.863 3.393 2.250 1.00 0.42 C ATOM 170 C MET 11 5.835 4.349 3.433 1.00 0.42 C ATOM 171 O MET 11 6.232 5.503 3.292 1.00 0.42 O ATOM 172 CB MET 11 4.640 3.671 1.372 1.00 0.42 C ATOM 173 CG MET 11 4.624 2.972 0.026 1.00 0.42 C ATOM 174 SD MET 11 5.944 3.463 -1.072 1.00 0.42 S ATOM 175 CE MET 11 5.782 2.171 -2.301 1.00 0.42 C ATOM 185 N LYS 12 5.401 3.879 4.610 1.00 0.05 N ATOM 186 CA LYS 12 5.328 4.704 5.811 1.00 0.05 C ATOM 187 C LYS 12 6.699 5.215 6.244 1.00 0.05 C ATOM 188 O LYS 12 6.800 6.193 6.984 1.00 0.05 O ATOM 189 CB LYS 12 4.664 3.929 6.944 1.00 0.05 C ATOM 190 CG LYS 12 3.185 3.684 6.715 1.00 0.05 C ATOM 191 CD LYS 12 2.551 2.886 7.832 1.00 0.05 C ATOM 192 CE LYS 12 1.062 2.676 7.576 1.00 0.05 C ATOM 193 NZ LYS 12 0.413 1.904 8.673 1.00 0.05 N ATOM 207 N LYS 13 7.765 4.555 5.785 1.00 0.67 N ATOM 208 CA LYS 13 9.121 4.954 6.121 1.00 0.67 C ATOM 209 C LYS 13 9.615 6.076 5.201 1.00 0.67 C ATOM 210 O LYS 13 10.691 6.635 5.417 1.00 0.67 O ATOM 211 CB LYS 13 10.051 3.760 5.981 1.00 0.67 C ATOM 212 CG LYS 13 9.767 2.626 6.939 1.00 0.67 C ATOM 213 CD LYS 13 10.709 1.481 6.678 1.00 0.67 C ATOM 214 CE LYS 13 10.433 0.303 7.581 1.00 0.67 C ATOM 215 NZ LYS 13 11.311 -0.843 7.240 1.00 0.67 N ATOM 229 N LYS 14 8.850 6.360 4.142 1.00 0.26 N ATOM 230 CA LYS 14 9.217 7.346 3.136 1.00 0.26 C ATOM 231 C LYS 14 8.208 8.497 2.988 1.00 0.26 C ATOM 232 O LYS 14 8.598 9.628 2.690 1.00 0.26 O ATOM 233 CB LYS 14 9.357 6.643 1.788 1.00 0.26 C ATOM 234 CG LYS 14 10.460 5.612 1.701 1.00 0.26 C ATOM 235 CD LYS 14 10.493 4.973 0.317 1.00 0.26 C ATOM 236 CE LYS 14 11.594 3.924 0.213 1.00 0.26 C ATOM 237 NZ LYS 14 11.614 3.266 -1.124 1.00 0.26 N ATOM 251 N PHE 15 6.914 8.207 3.171 1.00 1.00 N ATOM 252 CA PHE 15 5.876 9.194 2.879 1.00 1.00 C ATOM 253 C PHE 15 4.879 9.430 4.017 1.00 1.00 C ATOM 254 O PHE 15 4.589 8.544 4.819 1.00 1.00 O ATOM 255 CB PHE 15 5.089 8.740 1.671 1.00 1.00 C ATOM 256 CG PHE 15 5.900 8.530 0.441 1.00 1.00 C ATOM 257 CD1 PHE 15 6.344 7.263 0.125 1.00 1.00 C ATOM 258 CD2 PHE 15 6.246 9.574 -0.388 1.00 1.00 C ATOM 259 CE1 PHE 15 7.105 7.043 -0.991 1.00 1.00 C ATOM 260 CE2 PHE 15 7.007 9.359 -1.501 1.00 1.00 C ATOM 261 CZ PHE 15 7.437 8.091 -1.801 1.00 1.00 C ATOM 271 N LYS 16 4.328 10.636 4.059 1.00 0.54 N ATOM 272 CA LYS 16 3.345 11.006 5.071 1.00 0.54 C ATOM 273 C LYS 16 1.927 10.532 4.763 1.00 0.54 C ATOM 274 O LYS 16 1.502 10.489 3.605 1.00 0.54 O ATOM 275 CB LYS 16 3.330 12.524 5.237 1.00 0.54 C ATOM 276 CG LYS 16 4.621 13.109 5.799 1.00 0.54 C ATOM 277 CD LYS 16 4.526 14.626 5.942 1.00 0.54 C ATOM 278 CE LYS 16 5.819 15.217 6.490 1.00 0.54 C ATOM 279 NZ LYS 16 5.746 16.701 6.602 1.00 0.54 N ATOM 293 N ASN 17 1.174 10.252 5.832 1.00 0.92 N ATOM 294 CA ASN 17 -0.250 9.906 5.751 1.00 0.92 C ATOM 295 C ASN 17 -0.578 8.746 4.807 1.00 0.92 C ATOM 296 O ASN 17 -1.536 8.824 4.038 1.00 0.92 O ATOM 297 CB ASN 17 -1.059 11.132 5.363 1.00 0.92 C ATOM 298 CG ASN 17 -0.965 12.235 6.391 1.00 0.92 C ATOM 299 OD1 ASN 17 -0.968 11.979 7.601 1.00 0.92 O ATOM 300 ND2 ASN 17 -0.879 13.458 5.929 1.00 0.92 N ATOM 307 N CYS 18 0.202 7.671 4.862 1.00 0.23 N ATOM 308 CA CYS 18 -0.056 6.531 3.989 1.00 0.23 C ATOM 309 C CYS 18 -1.363 5.811 4.316 1.00 0.23 C ATOM 310 O CYS 18 -1.679 5.576 5.487 1.00 0.23 O ATOM 311 CB CYS 18 1.066 5.502 4.085 1.00 0.23 C ATOM 312 SG CYS 18 2.682 6.072 3.523 1.00 0.23 S ATOM 318 N GLU 19 -2.063 5.395 3.263 1.00 0.56 N ATOM 319 CA GLU 19 -3.301 4.621 3.352 1.00 0.56 C ATOM 320 C GLU 19 -3.294 3.493 2.338 1.00 0.56 C ATOM 321 O GLU 19 -2.959 3.706 1.171 1.00 0.56 O ATOM 322 CB GLU 19 -4.525 5.503 3.083 1.00 0.56 C ATOM 323 CG GLU 19 -5.874 4.769 3.185 1.00 0.56 C ATOM 324 CD GLU 19 -7.051 5.662 2.914 1.00 0.56 C ATOM 325 OE1 GLU 19 -6.837 6.832 2.674 1.00 0.56 O ATOM 326 OE2 GLU 19 -8.170 5.180 2.930 1.00 0.56 O ATOM 333 N VAL 20 -3.677 2.291 2.771 1.00 0.01 N ATOM 334 CA VAL 20 -3.685 1.158 1.854 1.00 0.01 C ATOM 335 C VAL 20 -5.066 0.533 1.706 1.00 0.01 C ATOM 336 O VAL 20 -5.819 0.435 2.680 1.00 0.01 O ATOM 337 CB VAL 20 -2.718 0.087 2.383 1.00 0.01 C ATOM 338 CG1 VAL 20 -1.327 0.622 2.427 1.00 0.01 C ATOM 339 CG2 VAL 20 -3.143 -0.319 3.772 1.00 0.01 C ATOM 349 N ARG 21 -5.373 0.078 0.488 1.00 0.75 N ATOM 350 CA ARG 21 -6.644 -0.581 0.191 1.00 0.75 C ATOM 351 C ARG 21 -6.419 -1.779 -0.731 1.00 0.75 C ATOM 352 O ARG 21 -5.742 -1.669 -1.756 1.00 0.75 O ATOM 353 CB ARG 21 -7.618 0.399 -0.461 1.00 0.75 C ATOM 354 CG ARG 21 -8.006 1.615 0.418 1.00 0.75 C ATOM 355 CD ARG 21 -9.062 2.460 -0.206 1.00 0.75 C ATOM 356 NE ARG 21 -9.375 3.647 0.605 1.00 0.75 N ATOM 357 CZ ARG 21 -10.373 4.510 0.352 1.00 0.75 C ATOM 358 NH1 ARG 21 -11.183 4.328 -0.673 1.00 0.75 N ATOM 359 NH2 ARG 21 -10.527 5.543 1.156 1.00 0.75 N ATOM 373 N CYS 22 -6.987 -2.928 -0.390 1.00 0.51 N ATOM 374 CA CYS 22 -6.752 -4.119 -1.206 1.00 0.51 C ATOM 375 C CYS 22 -7.693 -4.246 -2.391 1.00 0.51 C ATOM 376 O CYS 22 -8.866 -3.883 -2.301 1.00 0.51 O ATOM 377 CB CYS 22 -6.862 -5.373 -0.338 1.00 0.51 C ATOM 378 SG CYS 22 -5.595 -5.488 0.983 1.00 0.51 S ATOM 384 N ASP 23 -7.180 -4.807 -3.491 1.00 0.59 N ATOM 385 CA ASP 23 -7.973 -5.121 -4.671 1.00 0.59 C ATOM 386 C ASP 23 -7.654 -6.537 -5.128 1.00 0.59 C ATOM 387 O ASP 23 -6.806 -6.776 -6.002 1.00 0.59 O ATOM 388 CB ASP 23 -7.682 -4.137 -5.799 1.00 0.59 C ATOM 389 CG ASP 23 -8.525 -4.411 -7.030 1.00 0.59 C ATOM 390 OD1 ASP 23 -9.183 -5.447 -7.062 1.00 0.59 O ATOM 391 OD2 ASP 23 -8.484 -3.630 -7.949 1.00 0.59 O ATOM 396 N GLU 24 -8.429 -7.479 -4.621 1.00 0.49 N ATOM 397 CA GLU 24 -8.153 -8.875 -4.876 1.00 0.49 C ATOM 398 C GLU 24 -8.356 -9.214 -6.355 1.00 0.49 C ATOM 399 O GLU 24 -7.662 -10.075 -6.900 1.00 0.49 O ATOM 400 CB GLU 24 -9.061 -9.750 -4.017 1.00 0.49 C ATOM 401 CG GLU 24 -8.875 -9.575 -2.494 1.00 0.49 C ATOM 402 CD GLU 24 -7.480 -9.787 -1.955 1.00 0.49 C ATOM 403 OE1 GLU 24 -6.822 -10.768 -2.251 1.00 0.49 O ATOM 404 OE2 GLU 24 -7.046 -8.964 -1.169 1.00 0.49 O ATOM 411 N SER 25 -9.300 -8.523 -7.013 1.00 0.08 N ATOM 412 CA SER 25 -9.647 -8.818 -8.401 1.00 0.08 C ATOM 413 C SER 25 -8.510 -8.511 -9.375 1.00 0.08 C ATOM 414 O SER 25 -8.508 -9.015 -10.499 1.00 0.08 O ATOM 415 CB SER 25 -10.911 -8.075 -8.824 1.00 0.08 C ATOM 416 OG SER 25 -10.713 -6.686 -8.983 1.00 0.08 O ATOM 422 N ASN 26 -7.546 -7.683 -8.954 1.00 0.58 N ATOM 423 CA ASN 26 -6.398 -7.377 -9.791 1.00 0.58 C ATOM 424 C ASN 26 -5.111 -7.900 -9.168 1.00 0.58 C ATOM 425 O ASN 26 -4.018 -7.472 -9.546 1.00 0.58 O ATOM 426 CB ASN 26 -6.303 -5.890 -10.099 1.00 0.58 C ATOM 427 CG ASN 26 -7.356 -5.415 -11.090 1.00 0.58 C ATOM 428 OD1 ASN 26 -7.243 -5.735 -12.283 1.00 0.58 O ATOM 429 ND2 ASN 26 -8.336 -4.664 -10.656 1.00 0.58 N ATOM 436 N HIS 27 -5.241 -8.813 -8.199 1.00 0.00 N ATOM 437 CA HIS 27 -4.102 -9.410 -7.510 1.00 0.00 C ATOM 438 C HIS 27 -3.141 -8.362 -6.962 1.00 0.00 C ATOM 439 O HIS 27 -1.924 -8.527 -7.071 1.00 0.00 O ATOM 440 CB HIS 27 -3.326 -10.335 -8.454 1.00 0.00 C ATOM 441 CG HIS 27 -4.152 -11.437 -9.039 1.00 0.00 C ATOM 442 ND1 HIS 27 -4.627 -12.494 -8.290 1.00 0.00 N ATOM 443 CD2 HIS 27 -4.586 -11.643 -10.305 1.00 0.00 C ATOM 444 CE1 HIS 27 -5.315 -13.306 -9.075 1.00 0.00 C ATOM 445 NE2 HIS 27 -5.302 -12.813 -10.302 1.00 0.00 N ATOM 453 N CYS 28 -3.663 -7.287 -6.372 1.00 0.78 N ATOM 454 CA CYS 28 -2.775 -6.237 -5.887 1.00 0.78 C ATOM 455 C CYS 28 -3.376 -5.390 -4.782 1.00 0.78 C ATOM 456 O CYS 28 -4.569 -5.508 -4.476 1.00 0.78 O ATOM 457 CB CYS 28 -2.416 -5.314 -7.048 1.00 0.78 C ATOM 458 SG CYS 28 -3.844 -4.442 -7.733 1.00 0.78 S ATOM 464 N VAL 29 -2.531 -4.558 -4.174 1.00 0.77 N ATOM 465 CA VAL 29 -2.976 -3.626 -3.143 1.00 0.77 C ATOM 466 C VAL 29 -2.492 -2.221 -3.498 1.00 0.77 C ATOM 467 O VAL 29 -1.342 -2.024 -3.914 1.00 0.77 O ATOM 468 CB VAL 29 -2.482 -4.061 -1.742 1.00 0.77 C ATOM 469 CG1 VAL 29 -2.966 -3.070 -0.659 1.00 0.77 C ATOM 470 CG2 VAL 29 -2.964 -5.478 -1.456 1.00 0.77 C ATOM 480 N GLU 30 -3.391 -1.250 -3.405 1.00 0.62 N ATOM 481 CA GLU 30 -3.034 0.121 -3.729 1.00 0.62 C ATOM 482 C GLU 30 -2.649 0.902 -2.490 1.00 0.62 C ATOM 483 O GLU 30 -3.247 0.733 -1.422 1.00 0.62 O ATOM 484 CB GLU 30 -4.195 0.835 -4.432 1.00 0.62 C ATOM 485 CG GLU 30 -4.563 0.291 -5.822 1.00 0.62 C ATOM 486 CD GLU 30 -5.703 1.076 -6.469 1.00 0.62 C ATOM 487 OE1 GLU 30 -6.639 1.400 -5.790 1.00 0.62 O ATOM 488 OE2 GLU 30 -5.601 1.407 -7.633 1.00 0.62 O ATOM 495 N VAL 31 -1.706 1.823 -2.653 1.00 0.93 N ATOM 496 CA VAL 31 -1.355 2.709 -1.562 1.00 0.93 C ATOM 497 C VAL 31 -1.261 4.146 -2.018 1.00 0.93 C ATOM 498 O VAL 31 -0.696 4.467 -3.068 1.00 0.93 O ATOM 499 CB VAL 31 -0.025 2.260 -0.916 1.00 0.93 C ATOM 500 CG1 VAL 31 1.062 2.267 -1.910 1.00 0.93 C ATOM 501 CG2 VAL 31 0.374 3.181 0.279 1.00 0.93 C ATOM 511 N ARG 32 -1.760 5.035 -1.183 1.00 0.14 N ATOM 512 CA ARG 32 -1.647 6.443 -1.492 1.00 0.14 C ATOM 513 C ARG 32 -0.969 7.110 -0.338 1.00 0.14 C ATOM 514 O ARG 32 -1.094 6.684 0.813 1.00 0.14 O ATOM 515 CB ARG 32 -2.995 7.087 -1.776 1.00 0.14 C ATOM 516 CG ARG 32 -3.996 7.122 -0.620 1.00 0.14 C ATOM 517 CD ARG 32 -5.260 7.808 -1.048 1.00 0.14 C ATOM 518 NE ARG 32 -6.260 7.920 0.015 1.00 0.14 N ATOM 519 CZ ARG 32 -7.418 8.602 -0.099 1.00 0.14 C ATOM 520 NH1 ARG 32 -7.717 9.239 -1.212 1.00 0.14 N ATOM 521 NH2 ARG 32 -8.245 8.621 0.924 1.00 0.14 N ATOM 535 N CYS 33 -0.197 8.129 -0.647 1.00 0.06 N ATOM 536 CA CYS 33 0.562 8.814 0.386 1.00 0.06 C ATOM 537 C CYS 33 1.097 10.123 -0.125 1.00 0.06 C ATOM 538 O CYS 33 1.190 10.282 -1.339 1.00 0.06 O ATOM 539 CB CYS 33 1.711 7.913 0.773 1.00 0.06 C ATOM 540 SG CYS 33 2.800 7.522 -0.626 1.00 0.06 S ATOM 546 N SER 34 1.523 11.025 0.766 1.00 0.85 N ATOM 547 CA SER 34 2.107 12.275 0.294 1.00 0.85 C ATOM 548 C SER 34 1.248 12.860 -0.814 1.00 0.85 C ATOM 549 O SER 34 0.027 12.984 -0.686 1.00 0.85 O ATOM 550 CB SER 34 3.527 12.051 -0.195 1.00 0.85 C ATOM 551 OG SER 34 4.179 13.269 -0.501 1.00 0.85 O ATOM 557 N ASP 35 1.915 13.221 -1.893 1.00 0.99 N ATOM 558 CA ASP 35 1.304 13.697 -3.121 1.00 0.99 C ATOM 559 C ASP 35 1.435 12.677 -4.264 1.00 0.99 C ATOM 560 O ASP 35 1.520 13.062 -5.433 1.00 0.99 O ATOM 561 CB ASP 35 1.895 15.058 -3.501 1.00 0.99 C ATOM 562 CG ASP 35 3.424 15.043 -3.662 1.00 0.99 C ATOM 563 OD1 ASP 35 4.050 14.102 -3.192 1.00 0.99 O ATOM 564 OD2 ASP 35 3.951 15.969 -4.238 1.00 0.99 O ATOM 569 N THR 36 1.481 11.379 -3.924 1.00 0.78 N ATOM 570 CA THR 36 1.654 10.324 -4.921 1.00 0.78 C ATOM 571 C THR 36 0.810 9.041 -4.669 1.00 0.78 C ATOM 572 O THR 36 -0.068 8.992 -3.796 1.00 0.78 O ATOM 573 CB THR 36 3.159 9.970 -5.027 1.00 0.78 C ATOM 574 OG1 THR 36 3.380 9.126 -6.170 1.00 0.78 O ATOM 575 CG2 THR 36 3.634 9.257 -3.751 1.00 0.78 C ATOM 583 N LYS 37 1.062 8.026 -5.503 1.00 0.76 N ATOM 584 CA LYS 37 0.358 6.735 -5.488 1.00 0.76 C ATOM 585 C LYS 37 1.198 5.585 -6.038 1.00 0.76 C ATOM 586 O LYS 37 1.876 5.733 -7.057 1.00 0.76 O ATOM 587 CB LYS 37 -0.944 6.809 -6.301 1.00 0.76 C ATOM 588 CG LYS 37 -1.750 5.492 -6.298 1.00 0.76 C ATOM 589 CD LYS 37 -3.052 5.580 -7.064 1.00 0.76 C ATOM 590 CE LYS 37 -3.724 4.210 -7.077 1.00 0.76 C ATOM 591 NZ LYS 37 -4.982 4.189 -7.857 1.00 0.76 N ATOM 605 N TYR 38 1.118 4.426 -5.376 1.00 0.85 N ATOM 606 CA TYR 38 1.809 3.233 -5.849 1.00 0.85 C ATOM 607 C TYR 38 0.879 2.023 -5.862 1.00 0.85 C ATOM 608 O TYR 38 -0.084 1.951 -5.095 1.00 0.85 O ATOM 609 CB TYR 38 3.016 2.910 -4.966 1.00 0.85 C ATOM 610 CG TYR 38 4.020 4.009 -4.856 1.00 0.85 C ATOM 611 CD1 TYR 38 3.929 4.951 -3.826 1.00 0.85 C ATOM 612 CD2 TYR 38 5.030 4.086 -5.780 1.00 0.85 C ATOM 613 CE1 TYR 38 4.869 5.952 -3.745 1.00 0.85 C ATOM 614 CE2 TYR 38 5.955 5.086 -5.701 1.00 0.85 C ATOM 615 CZ TYR 38 5.886 6.014 -4.699 1.00 0.85 C ATOM 616 OH TYR 38 6.831 7.004 -4.655 1.00 0.85 O ATOM 626 N THR 39 1.176 1.054 -6.718 1.00 0.82 N ATOM 627 CA THR 39 0.446 -0.206 -6.664 1.00 0.82 C ATOM 628 C THR 39 1.460 -1.310 -6.444 1.00 0.82 C ATOM 629 O THR 39 2.459 -1.391 -7.163 1.00 0.82 O ATOM 630 CB THR 39 -0.369 -0.477 -7.939 1.00 0.82 C ATOM 631 OG1 THR 39 -1.313 0.585 -8.139 1.00 0.82 O ATOM 632 CG2 THR 39 -1.136 -1.802 -7.783 1.00 0.82 C ATOM 640 N LEU 40 1.226 -2.126 -5.428 1.00 0.21 N ATOM 641 CA LEU 40 2.143 -3.199 -5.100 1.00 0.21 C ATOM 642 C LEU 40 1.549 -4.545 -5.453 1.00 0.21 C ATOM 643 O LEU 40 0.334 -4.749 -5.363 1.00 0.21 O ATOM 644 CB LEU 40 2.466 -3.197 -3.603 1.00 0.21 C ATOM 645 CG LEU 40 3.437 -2.086 -3.020 1.00 0.21 C ATOM 646 CD1 LEU 40 4.772 -2.186 -3.698 1.00 0.21 C ATOM 647 CD2 LEU 40 2.860 -0.664 -3.211 1.00 0.21 C ATOM 659 N CYS 41 2.425 -5.474 -5.801 1.00 0.82 N ATOM 660 CA CYS 41 2.059 -6.857 -6.067 1.00 0.82 C ATOM 661 C CYS 41 3.266 -7.722 -5.721 1.00 0.82 C ATOM 662 O CYS 41 4.386 -7.207 -5.702 1.00 0.82 O ATOM 663 OXT CYS 41 3.098 -8.725 -5.031 1.00 0.82 O ATOM 664 CB CYS 41 1.643 -7.050 -7.527 1.00 0.82 C ATOM 665 SG CYS 41 1.076 -8.723 -7.923 1.00 0.82 S TER END