####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS324_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS324_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 1 - 39 4.66 5.58 LONGEST_CONTINUOUS_SEGMENT: 39 2 - 40 4.73 5.54 LCS_AVERAGE: 95.06 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 4 - 35 1.73 6.37 LCS_AVERAGE: 64.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 7 - 31 0.99 6.32 LCS_AVERAGE: 42.83 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 5 39 0 3 4 5 6 7 8 8 10 12 17 18 18 25 26 33 35 38 39 39 LCS_GDT Q 2 Q 2 3 5 39 0 3 4 7 11 19 22 29 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT E 3 E 3 3 5 39 2 3 4 5 6 7 21 25 28 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT T 4 T 4 3 32 39 2 3 4 5 6 20 29 30 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT R 5 R 5 11 32 39 3 3 4 19 25 29 31 31 31 32 32 34 34 35 36 36 36 38 39 39 LCS_GDT K 6 K 6 20 32 39 5 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT K 7 K 7 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT C 8 C 8 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT T 9 T 9 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT E 10 E 10 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT M 11 M 11 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT K 12 K 12 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT K 13 K 13 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT K 14 K 14 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT F 15 F 15 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT K 16 K 16 25 32 39 3 6 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT N 17 N 17 25 32 39 3 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT C 18 C 18 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT E 19 E 19 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT V 20 V 20 25 32 39 4 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT R 21 R 21 25 32 39 3 19 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT C 22 C 22 25 32 39 4 13 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT D 23 D 23 25 32 39 3 13 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT E 24 E 24 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT S 25 S 25 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 37 39 39 LCS_GDT N 26 N 26 25 32 39 3 9 15 28 29 29 31 31 31 32 33 34 34 35 36 36 36 37 38 39 LCS_GDT H 27 H 27 25 32 39 6 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT C 28 C 28 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT V 29 V 29 25 32 39 3 19 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT E 30 E 30 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT V 31 V 31 25 32 39 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT R 32 R 32 8 32 39 6 17 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT C 33 C 33 8 32 39 6 19 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT S 34 S 34 8 32 39 5 6 11 27 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT D 35 D 35 4 32 39 3 4 10 26 28 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 LCS_GDT T 36 T 36 4 7 39 3 4 6 7 9 14 23 28 30 31 31 32 34 35 36 36 36 38 39 39 LCS_GDT K 37 K 37 4 7 39 3 4 6 7 8 10 11 13 14 17 28 31 34 34 36 36 36 38 39 39 LCS_GDT Y 38 Y 38 4 7 39 3 4 6 7 8 10 11 13 14 16 17 19 21 28 30 32 34 38 39 39 LCS_GDT T 39 T 39 4 7 39 3 4 5 6 8 10 11 13 14 16 17 19 22 29 35 35 36 38 39 39 LCS_GDT L 40 L 40 4 6 39 3 4 5 6 7 10 11 13 14 16 17 18 22 28 30 31 33 38 39 39 LCS_GDT C 41 C 41 4 6 38 3 3 5 6 7 8 9 13 14 16 17 17 19 21 23 31 33 36 38 39 LCS_AVERAGE LCS_A: 67.36 ( 42.83 64.19 95.06 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 20 27 28 29 29 31 31 31 32 33 34 34 35 36 36 36 38 39 39 GDT PERCENT_AT 21.95 48.78 65.85 68.29 70.73 70.73 75.61 75.61 75.61 78.05 80.49 82.93 82.93 85.37 87.80 87.80 87.80 92.68 95.12 95.12 GDT RMS_LOCAL 0.27 0.64 0.90 1.02 1.17 1.17 1.48 1.48 1.48 1.73 2.35 2.46 2.46 2.92 3.36 3.36 3.36 4.96 4.97 4.66 GDT RMS_ALL_AT 6.24 6.22 6.31 6.37 6.45 6.45 6.38 6.38 6.38 6.37 6.35 6.35 6.35 6.11 5.93 5.93 5.93 5.48 5.47 5.58 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 13.533 0 0.048 0.664 16.170 0.000 0.000 13.532 LGA Q 2 Q 2 8.347 0 0.266 0.929 10.818 0.000 0.000 8.317 LGA E 3 E 3 8.741 0 0.212 1.222 12.440 0.000 0.000 12.419 LGA T 4 T 4 5.375 0 0.149 1.354 6.539 0.455 1.558 4.954 LGA R 5 R 5 3.518 0 0.593 0.837 12.650 25.909 9.421 12.650 LGA K 6 K 6 1.180 0 0.223 1.139 5.973 66.818 41.818 5.585 LGA K 7 K 7 0.224 0 0.074 0.595 1.751 95.455 84.646 0.550 LGA C 8 C 8 0.843 0 0.035 0.038 1.349 81.818 76.364 1.349 LGA T 9 T 9 0.597 0 0.033 0.920 2.403 90.909 78.442 2.403 LGA E 10 E 10 0.421 0 0.024 0.705 3.412 100.000 68.283 3.412 LGA M 11 M 11 0.188 0 0.038 1.052 3.344 100.000 82.045 3.344 LGA K 12 K 12 0.519 0 0.019 0.689 3.095 86.364 71.313 3.095 LGA K 13 K 13 0.807 0 0.082 0.621 3.103 86.364 63.232 1.521 LGA K 14 K 14 0.256 0 0.017 0.633 2.069 100.000 91.111 2.069 LGA F 15 F 15 0.609 0 0.055 0.294 1.484 86.364 79.008 1.069 LGA K 16 K 16 1.432 0 0.102 1.295 5.176 73.636 50.909 5.176 LGA N 17 N 17 0.863 0 0.113 0.259 1.265 81.818 77.727 0.562 LGA C 18 C 18 1.017 0 0.063 0.153 1.294 69.545 68.182 1.294 LGA E 19 E 19 0.904 0 0.146 0.882 4.977 81.818 51.111 2.932 LGA V 20 V 20 1.209 0 0.015 0.256 1.524 65.455 63.377 1.524 LGA R 21 R 21 1.365 0 0.037 1.563 7.945 61.818 36.529 6.626 LGA C 22 C 22 1.463 0 0.083 0.294 2.926 65.455 59.091 2.926 LGA D 23 D 23 1.557 0 0.298 0.365 2.937 48.636 39.318 2.710 LGA E 24 E 24 0.919 0 0.046 0.732 3.746 77.727 56.566 3.746 LGA S 25 S 25 0.960 0 0.510 0.455 1.482 77.727 73.636 1.482 LGA N 26 N 26 2.928 0 0.463 1.376 7.494 42.727 22.045 7.494 LGA H 27 H 27 0.996 0 0.370 1.408 4.333 81.818 53.636 4.007 LGA C 28 C 28 0.379 0 0.131 0.817 3.458 100.000 86.364 3.458 LGA V 29 V 29 0.972 0 0.052 0.843 3.313 77.727 63.636 1.742 LGA E 30 E 30 0.526 0 0.162 0.729 2.824 77.727 60.202 2.788 LGA V 31 V 31 0.335 0 0.067 1.112 2.698 86.818 72.468 1.940 LGA R 32 R 32 1.288 0 0.187 1.773 8.539 69.545 41.157 8.539 LGA C 33 C 33 0.853 0 0.503 0.945 3.851 49.091 60.303 0.431 LGA S 34 S 34 3.510 0 0.202 0.249 6.820 16.818 11.515 6.820 LGA D 35 D 35 3.419 0 0.147 1.218 8.180 20.909 20.909 3.544 LGA T 36 T 36 9.113 0 0.152 0.919 12.834 0.000 0.000 10.440 LGA K 37 K 37 11.204 0 0.331 0.941 20.073 0.000 0.000 20.073 LGA Y 38 Y 38 14.714 0 0.032 1.210 20.839 0.000 0.000 20.839 LGA T 39 T 39 13.975 0 0.157 0.860 17.126 0.000 0.000 14.297 LGA L 40 L 40 15.853 0 0.136 0.742 16.846 0.000 0.000 12.138 LGA C 41 C 41 19.196 0 0.490 1.309 21.111 0.000 0.000 18.595 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.461 5.498 6.430 54.812 44.291 24.789 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 31 1.48 70.122 70.690 1.958 LGA_LOCAL RMSD: 1.483 Number of atoms: 31 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.375 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.461 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.237776 * X + 0.753550 * Y + -0.612882 * Z + -2.020399 Y_new = -0.939011 * X + 0.339718 * Y + 0.053387 * Z + 1.163912 Z_new = 0.248437 * X + 0.562809 * Y + 0.788368 * Z + 0.226230 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.322790 -0.251066 0.619988 [DEG: -75.7903 -14.3850 35.5227 ] ZXZ: -1.657685 0.662644 0.415698 [DEG: -94.9784 37.9667 23.8178 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS324_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS324_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 31 1.48 70.690 5.46 REMARK ---------------------------------------------------------- MOLECULE T0955TS324_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT 5kvnA ATOM 1 CB SER 1 -7.208 -4.778 3.237 1.00 24.52 C ATOM 2 OG SER 1 -6.836 -5.855 2.393 1.00 24.52 O ATOM 4 C SER 1 -6.790 -5.995 5.439 1.00 24.52 C ATOM 5 O SER 1 -5.797 -5.377 5.852 1.00 24.52 O ATOM 8 N SER 1 -8.371 -4.103 5.300 1.00 24.52 N ATOM 10 CA SER 1 -7.832 -5.274 4.549 1.00 24.52 C ATOM 11 N GLN 2 -7.047 -7.276 5.763 1.00 21.19 N ATOM 13 CA GLN 2 -6.166 -8.088 6.644 1.00 21.19 C ATOM 14 CB GLN 2 -6.965 -8.545 7.880 1.00 21.19 C ATOM 15 CG GLN 2 -7.269 -7.434 8.877 1.00 21.19 C ATOM 16 CD GLN 2 -8.057 -7.928 10.077 1.00 21.19 C ATOM 17 OE1 GLN 2 -7.481 -8.329 11.088 1.00 21.19 O ATOM 18 NE2 GLN 2 -9.381 -7.901 9.969 1.00 21.19 N ATOM 21 C GLN 2 -5.200 -9.251 6.241 1.00 21.19 C ATOM 22 O GLN 2 -4.076 -9.286 6.760 1.00 21.19 O ATOM 23 N GLU 3 -5.599 -10.161 5.331 1.00 14.40 N ATOM 25 CA GLU 3 -4.800 -11.387 4.996 1.00 14.40 C ATOM 26 CB GLU 3 -5.739 -12.605 5.096 1.00 14.40 C ATOM 27 CG GLU 3 -6.011 -13.076 6.521 1.00 14.40 C ATOM 28 CD GLU 3 -6.939 -14.276 6.574 1.00 14.40 C ATOM 29 OE1 GLU 3 -8.170 -14.076 6.653 1.00 14.40 O ATOM 30 OE2 GLU 3 -6.437 -15.420 6.541 1.00 14.40 O ATOM 31 C GLU 3 -3.727 -11.744 3.905 1.00 14.40 C ATOM 32 O GLU 3 -2.954 -12.677 4.176 1.00 14.40 O ATOM 33 N THR 4 -3.587 -11.062 2.750 1.00 10.86 N ATOM 35 CA THR 4 -2.606 -11.568 1.734 1.00 10.86 C ATOM 36 CB THR 4 -3.198 -11.495 0.277 1.00 10.86 C ATOM 37 OG1 THR 4 -4.184 -10.459 0.204 1.00 10.86 O ATOM 39 CG2 THR 4 -3.803 -12.841 -0.143 1.00 10.86 C ATOM 40 C THR 4 -1.083 -11.291 1.598 1.00 10.86 C ATOM 41 O THR 4 -0.347 -12.262 1.348 1.00 10.86 O ATOM 42 N ARG 5 -0.576 -10.064 1.814 1.00 10.87 N ATOM 44 CA ARG 5 0.888 -9.783 1.687 1.00 10.87 C ATOM 45 CB ARG 5 1.365 -9.671 0.217 1.00 10.87 C ATOM 46 CG ARG 5 1.754 -10.984 -0.472 1.00 10.87 C ATOM 47 CD ARG 5 2.685 -10.770 -1.670 1.00 10.87 C ATOM 48 NE ARG 5 2.071 -10.004 -2.757 1.00 10.87 N ATOM 50 CZ ARG 5 2.493 -9.992 -4.023 1.00 10.87 C ATOM 51 NH1 ARG 5 1.851 -9.255 -4.919 1.00 10.87 N ATOM 54 NH2 ARG 5 3.548 -10.707 -4.404 1.00 10.87 N ATOM 57 C ARG 5 1.514 -8.640 2.505 1.00 10.87 C ATOM 58 O ARG 5 0.944 -7.552 2.604 1.00 10.87 O ATOM 59 N LYS 6 2.780 -8.842 2.894 1.00 9.08 N ATOM 61 CA LYS 6 3.587 -7.909 3.710 1.00 9.08 C ATOM 62 CB LYS 6 4.944 -8.555 4.042 1.00 9.08 C ATOM 63 CG LYS 6 4.892 -9.652 5.090 1.00 9.08 C ATOM 64 CD LYS 6 6.273 -10.229 5.352 1.00 9.08 C ATOM 65 CE LYS 6 6.221 -11.328 6.401 1.00 9.08 C ATOM 66 NZ LYS 6 7.568 -11.904 6.669 1.00 9.08 N ATOM 70 C LYS 6 3.829 -6.488 3.150 1.00 9.08 C ATOM 71 O LYS 6 4.377 -5.630 3.860 1.00 9.08 O ATOM 72 N LYS 7 3.372 -6.230 1.917 1.00 8.07 N ATOM 74 CA LYS 7 3.542 -4.921 1.255 1.00 8.07 C ATOM 75 CB LYS 7 3.437 -5.056 -0.269 1.00 8.07 C ATOM 76 CG LYS 7 4.712 -5.553 -0.928 1.00 8.07 C ATOM 77 CD LYS 7 4.535 -5.710 -2.431 1.00 8.07 C ATOM 78 CE LYS 7 5.812 -6.208 -3.089 1.00 8.07 C ATOM 79 NZ LYS 7 5.653 -6.367 -4.561 1.00 8.07 N ATOM 83 C LYS 7 2.659 -3.759 1.753 1.00 8.07 C ATOM 84 O LYS 7 3.060 -2.595 1.623 1.00 8.07 O ATOM 85 N CYS 8 1.494 -4.070 2.347 1.00 7.53 N ATOM 87 CA CYS 8 0.568 -3.044 2.888 1.00 7.53 C ATOM 88 CB CYS 8 -0.772 -3.659 3.298 1.00 7.53 C ATOM 89 SG CYS 8 -2.026 -2.455 3.834 1.00 7.53 S ATOM 90 C CYS 8 1.163 -2.317 4.104 1.00 7.53 C ATOM 91 O CYS 8 1.086 -1.085 4.186 1.00 7.53 O ATOM 92 N THR 9 1.770 -3.090 5.018 1.00 6.94 N ATOM 94 CA THR 9 2.391 -2.562 6.247 1.00 6.94 C ATOM 95 CB THR 9 2.658 -3.680 7.294 1.00 6.94 C ATOM 96 OG1 THR 9 3.302 -4.793 6.661 1.00 6.94 O ATOM 98 CG2 THR 9 1.355 -4.135 7.935 1.00 6.94 C ATOM 99 C THR 9 3.683 -1.765 5.974 1.00 6.94 C ATOM 100 O THR 9 3.910 -0.724 6.608 1.00 6.94 O ATOM 101 N GLU 10 4.501 -2.248 5.026 1.00 6.76 N ATOM 103 CA GLU 10 5.761 -1.595 4.614 1.00 6.76 C ATOM 104 CB GLU 10 6.642 -2.549 3.805 1.00 6.76 C ATOM 105 CG GLU 10 7.453 -3.503 4.661 1.00 6.76 C ATOM 106 CD GLU 10 8.319 -4.438 3.837 1.00 6.76 C ATOM 107 OE1 GLU 10 9.480 -4.078 3.550 1.00 6.76 O ATOM 108 OE2 GLU 10 7.840 -5.536 3.480 1.00 6.76 O ATOM 109 C GLU 10 5.555 -0.283 3.840 1.00 6.76 C ATOM 110 O GLU 10 6.255 0.704 4.102 1.00 6.76 O ATOM 111 N MET 11 4.594 -0.287 2.901 1.00 5.56 N ATOM 113 CA MET 11 4.244 0.886 2.074 1.00 5.56 C ATOM 114 CG MET 11 4.063 0.136 -0.376 1.00 5.56 C ATOM 115 SD MET 11 4.960 -1.436 -0.376 1.00 5.56 S ATOM 116 CE MET 11 4.633 -2.002 -2.038 1.00 5.56 C ATOM 117 C MET 11 3.587 2.007 2.886 1.00 5.56 C ATOM 118 O MET 11 3.810 3.194 2.604 1.00 5.56 O ATOM 119 CB MET 11 3.330 0.488 0.912 1.00 5.56 C ATOM 120 N LYS 12 2.792 1.614 3.891 1.00 4.56 N ATOM 122 CA LYS 12 2.084 2.540 4.797 1.00 4.56 C ATOM 123 CB LYS 12 1.048 1.778 5.637 1.00 4.56 C ATOM 124 CG LYS 12 -0.259 2.531 5.886 1.00 4.56 C ATOM 125 CD LYS 12 -1.224 1.702 6.725 1.00 4.56 C ATOM 126 CE LYS 12 -2.538 2.436 6.985 1.00 4.56 C ATOM 127 NZ LYS 12 -2.394 3.616 7.889 1.00 4.56 N ATOM 131 C LYS 12 3.079 3.284 5.715 1.00 4.56 C ATOM 132 O LYS 12 2.873 4.467 6.024 1.00 4.56 O ATOM 133 N LYS 13 4.145 2.579 6.127 1.00 4.32 N ATOM 135 CA LYS 13 5.210 3.121 6.994 1.00 4.32 C ATOM 136 CB LYS 13 6.005 1.987 7.648 1.00 4.32 C ATOM 137 CG LYS 13 5.364 1.437 8.907 1.00 4.32 C ATOM 138 CD LYS 13 6.198 0.317 9.509 1.00 4.32 C ATOM 139 CE LYS 13 5.555 -0.234 10.771 1.00 4.32 C ATOM 140 NZ LYS 13 6.361 -1.332 11.372 1.00 4.32 N ATOM 144 C LYS 13 6.170 4.096 6.288 1.00 4.32 C ATOM 145 O LYS 13 6.670 5.041 6.915 1.00 4.32 O ATOM 146 N LYS 14 6.398 3.859 4.989 1.00 4.57 N ATOM 148 CA LYS 14 7.282 4.675 4.127 1.00 4.57 C ATOM 149 CB LYS 14 7.686 3.890 2.874 1.00 4.57 C ATOM 150 CG LYS 14 8.614 2.719 3.130 1.00 4.57 C ATOM 151 CD LYS 14 8.964 1.998 1.837 1.00 4.57 C ATOM 152 CE LYS 14 9.895 0.825 2.094 1.00 4.57 C ATOM 153 NZ LYS 14 10.246 0.108 0.837 1.00 4.57 N ATOM 157 C LYS 14 6.649 6.007 3.695 1.00 4.57 C ATOM 158 O LYS 14 7.340 7.031 3.613 1.00 4.57 O ATOM 159 N PHE 15 5.336 5.968 3.433 1.00 1.64 N ATOM 161 CA PHE 15 4.535 7.120 2.985 1.00 1.64 C ATOM 162 CB PHE 15 3.887 6.791 1.605 1.00 1.64 C ATOM 163 CG PHE 15 4.868 6.328 0.522 1.00 1.64 C ATOM 164 CD1 PHE 15 5.158 4.953 0.347 1.00 1.64 C ATOM 165 CD2 PHE 15 5.475 7.261 -0.353 1.00 1.64 C ATOM 166 CE1 PHE 15 6.039 4.512 -0.680 1.00 1.64 C ATOM 167 CE2 PHE 15 6.357 6.836 -1.384 1.00 1.64 C ATOM 168 CZ PHE 15 6.641 5.458 -1.547 1.00 1.64 C ATOM 169 C PHE 15 3.466 7.488 4.053 1.00 1.64 C ATOM 170 O PHE 15 2.254 7.386 3.809 1.00 1.64 O ATOM 171 N LYS 16 3.937 8.065 5.168 1.00 1.24 N ATOM 173 CA LYS 16 3.126 8.441 6.358 1.00 1.24 C ATOM 174 CB LYS 16 4.046 9.003 7.445 1.00 1.24 C ATOM 175 CG LYS 16 5.041 8.020 8.015 1.00 1.24 C ATOM 176 CD LYS 16 5.910 8.670 9.088 1.00 1.24 C ATOM 177 CE LYS 16 6.924 7.693 9.679 1.00 1.24 C ATOM 178 NZ LYS 16 7.995 7.290 8.719 1.00 1.24 N ATOM 182 C LYS 16 1.906 9.383 6.251 1.00 1.24 C ATOM 183 O LYS 16 0.918 9.192 6.975 1.00 1.24 O ATOM 184 N ASN 17 1.981 10.387 5.371 1.00 0.91 N ATOM 186 CA ASN 17 0.908 11.386 5.178 1.00 0.91 C ATOM 187 CB ASN 17 1.530 12.727 4.747 1.00 0.91 C ATOM 188 CG ASN 17 2.724 13.133 5.602 1.00 0.91 C ATOM 189 OD1 ASN 17 2.574 13.824 6.612 1.00 0.91 O ATOM 190 ND2 ASN 17 3.919 12.719 5.189 1.00 0.91 N ATOM 193 C ASN 17 -0.123 10.926 4.131 1.00 0.91 C ATOM 194 O ASN 17 -1.153 11.581 3.912 1.00 0.91 O ATOM 195 N CYS 18 0.157 9.754 3.554 1.00 0.93 N ATOM 197 CA CYS 18 -0.627 9.113 2.490 1.00 0.93 C ATOM 198 CB CYS 18 0.340 8.464 1.518 1.00 0.93 C ATOM 199 SG CYS 18 1.833 9.448 1.365 1.00 0.93 S ATOM 200 C CYS 18 -1.697 8.094 2.895 1.00 0.93 C ATOM 201 O CYS 18 -1.723 7.619 4.036 1.00 0.93 O ATOM 202 N GLU 19 -2.614 7.833 1.956 1.00 1.51 N ATOM 204 CA GLU 19 -3.708 6.870 2.116 1.00 1.51 C ATOM 205 CB GLU 19 -5.053 7.536 1.809 1.00 1.51 C ATOM 206 CG GLU 19 -5.318 8.729 2.694 1.00 1.51 C ATOM 207 CD GLU 19 -6.655 9.391 2.422 1.00 1.51 C ATOM 208 OE1 GLU 19 -6.725 10.255 1.521 1.00 1.51 O ATOM 209 OE2 GLU 19 -7.637 9.054 3.117 1.00 1.51 O ATOM 210 C GLU 19 -3.469 5.654 1.207 1.00 1.51 C ATOM 211 O GLU 19 -3.482 5.787 -0.021 1.00 1.51 O ATOM 212 N VAL 20 -3.159 4.503 1.819 1.00 1.56 N ATOM 214 CA VAL 20 -2.901 3.245 1.094 1.00 1.56 C ATOM 215 CB VAL 20 -1.569 2.530 1.582 1.00 1.56 C ATOM 216 CG1 VAL 20 -0.961 1.676 0.458 1.00 1.56 C ATOM 217 CG2 VAL 20 -0.541 3.548 2.078 1.00 1.56 C ATOM 218 C VAL 20 -4.106 2.286 1.242 1.00 1.56 C ATOM 219 O VAL 20 -4.416 1.832 2.356 1.00 1.56 O ATOM 220 N ARG 21 -4.820 2.059 0.131 1.00 1.59 N ATOM 222 CA ARG 21 -5.971 1.142 0.087 1.00 1.59 C ATOM 223 CB ARG 21 -7.188 1.766 -0.652 1.00 1.59 C ATOM 224 CG ARG 21 -7.035 2.173 -2.141 1.00 1.59 C ATOM 225 CD ARG 21 -6.999 3.676 -2.363 1.00 1.59 C ATOM 226 NE ARG 21 -5.624 4.163 -2.375 1.00 1.59 N ATOM 228 CZ ARG 21 -5.266 5.439 -2.474 1.00 1.59 C ATOM 229 NH1 ARG 21 -3.979 5.750 -2.480 1.00 1.59 N ATOM 232 NH2 ARG 21 -6.175 6.407 -2.552 1.00 1.59 N ATOM 235 C ARG 21 -5.563 -0.230 -0.485 1.00 1.59 C ATOM 236 O ARG 21 -5.076 -0.314 -1.621 1.00 1.59 O ATOM 237 N CYS 22 -5.716 -1.278 0.332 1.00 1.63 N ATOM 239 CA CYS 22 -5.364 -2.650 -0.049 1.00 1.63 C ATOM 240 CB CYS 22 -4.501 -3.301 1.028 1.00 1.63 C ATOM 241 SG CYS 22 -2.806 -2.749 0.948 1.00 1.63 S ATOM 242 C CYS 22 -6.549 -3.552 -0.395 1.00 1.63 C ATOM 243 O CYS 22 -7.568 -3.558 0.307 1.00 1.63 O ATOM 244 N ASP 23 -6.410 -4.252 -1.526 1.00 2.01 N ATOM 246 CA ASP 23 -7.408 -5.192 -2.055 1.00 2.01 C ATOM 247 CB ASP 23 -7.953 -4.691 -3.405 1.00 2.01 C ATOM 248 CG ASP 23 -8.968 -3.582 -3.251 1.00 2.01 C ATOM 249 OD1 ASP 23 -8.567 -2.397 -3.249 1.00 2.01 O ATOM 250 OD2 ASP 23 -10.177 -3.884 -3.150 1.00 2.01 O ATOM 251 C ASP 23 -6.834 -6.610 -2.207 1.00 2.01 C ATOM 252 O ASP 23 -6.049 -6.866 -3.122 1.00 2.01 O ATOM 253 N GLU 24 -7.216 -7.512 -1.291 1.00 2.93 N ATOM 255 CA GLU 24 -6.783 -8.936 -1.260 1.00 2.93 C ATOM 256 CB GLU 24 -7.414 -9.650 -0.062 1.00 2.93 C ATOM 257 CG GLU 24 -6.934 -9.169 1.302 1.00 2.93 C ATOM 258 CD GLU 24 -7.707 -9.796 2.447 1.00 2.93 C ATOM 259 OE1 GLU 24 -7.352 -10.919 2.867 1.00 2.93 O ATOM 260 OE2 GLU 24 -8.672 -9.165 2.929 1.00 2.93 O ATOM 261 C GLU 24 -7.067 -9.745 -2.550 1.00 2.93 C ATOM 262 O GLU 24 -6.279 -10.618 -2.926 1.00 2.93 O ATOM 263 N SER 25 -8.148 -9.354 -3.237 1.00 2.32 N ATOM 265 CA SER 25 -8.695 -9.897 -4.508 1.00 2.32 C ATOM 266 CB SER 25 -10.082 -9.307 -4.813 1.00 2.32 C ATOM 267 OG SER 25 -11.043 -9.781 -3.884 1.00 2.32 O ATOM 269 C SER 25 -7.739 -9.818 -5.722 1.00 2.32 C ATOM 270 O SER 25 -8.024 -9.108 -6.700 1.00 2.32 O ATOM 271 N ASN 26 -6.580 -10.503 -5.620 1.00 3.71 N ATOM 273 CA ASN 26 -5.433 -10.472 -6.578 1.00 3.71 C ATOM 274 CB ASN 26 -5.846 -10.745 -8.048 1.00 3.71 C ATOM 275 CG ASN 26 -4.650 -10.903 -8.983 1.00 3.71 C ATOM 276 OD1 ASN 26 -4.151 -12.012 -9.190 1.00 3.71 O ATOM 277 ND2 ASN 26 -4.197 -9.795 -9.562 1.00 3.71 N ATOM 280 C ASN 26 -4.879 -9.055 -6.374 1.00 3.71 C ATOM 281 O ASN 26 -4.999 -8.137 -7.198 1.00 3.71 O ATOM 282 N HIS 27 -4.171 -8.998 -5.245 1.00 2.71 N ATOM 284 CA HIS 27 -3.566 -7.828 -4.618 1.00 2.71 C ATOM 285 CG HIS 27 -2.331 -9.520 -3.144 1.00 2.71 C ATOM 286 CD2 HIS 27 -1.044 -9.763 -2.796 1.00 2.71 C ATOM 287 ND1 HIS 27 -2.880 -10.747 -3.450 1.00 2.71 N ATOM 289 CE1 HIS 27 -1.968 -11.690 -3.295 1.00 2.71 C ATOM 290 NE2 HIS 27 -0.845 -11.119 -2.898 1.00 2.71 N ATOM 292 C HIS 27 -2.489 -6.972 -5.293 1.00 2.71 C ATOM 293 O HIS 27 -1.373 -7.419 -5.589 1.00 2.71 O ATOM 294 CB HIS 27 -3.115 -8.234 -3.205 1.00 2.71 C ATOM 295 N CYS 28 -2.887 -5.711 -5.488 1.00 1.84 N ATOM 297 CA CYS 28 -2.102 -4.630 -6.084 1.00 1.84 C ATOM 298 CB CYS 28 -2.774 -4.151 -7.372 1.00 1.84 C ATOM 299 SG CYS 28 -4.510 -3.706 -7.128 1.00 1.84 S ATOM 300 C CYS 28 -2.154 -3.510 -5.039 1.00 1.84 C ATOM 301 O CYS 28 -3.156 -3.382 -4.324 1.00 1.84 O ATOM 302 N VAL 29 -1.085 -2.713 -4.950 1.00 2.78 N ATOM 304 CA VAL 29 -1.007 -1.599 -3.994 1.00 2.78 C ATOM 305 CB VAL 29 0.299 -1.636 -3.124 1.00 2.78 C ATOM 306 CG1 VAL 29 0.043 -2.398 -1.857 1.00 2.78 C ATOM 307 CG2 VAL 29 1.486 -2.254 -3.891 1.00 2.78 C ATOM 308 C VAL 29 -1.175 -0.214 -4.639 1.00 2.78 C ATOM 309 O VAL 29 -0.464 0.121 -5.596 1.00 2.78 O ATOM 310 N GLU 30 -2.178 0.538 -4.162 1.00 1.88 N ATOM 312 CA GLU 30 -2.465 1.894 -4.643 1.00 1.88 C ATOM 313 CB GLU 30 -3.891 2.000 -5.197 1.00 1.88 C ATOM 314 CG GLU 30 -3.983 1.707 -6.673 1.00 1.88 C ATOM 315 CD GLU 30 -5.400 1.815 -7.208 1.00 1.88 C ATOM 316 OE1 GLU 30 -5.791 2.920 -7.642 1.00 1.88 O ATOM 317 OE2 GLU 30 -6.120 0.795 -7.199 1.00 1.88 O ATOM 318 C GLU 30 -2.248 2.944 -3.550 1.00 1.88 C ATOM 319 O GLU 30 -3.013 3.013 -2.578 1.00 1.88 O ATOM 320 N VAL 31 -1.161 3.712 -3.696 1.00 1.59 N ATOM 322 CA VAL 31 -0.797 4.799 -2.778 1.00 1.59 C ATOM 323 CB VAL 31 0.488 4.451 -1.885 1.00 1.59 C ATOM 324 CG1 VAL 31 1.752 4.273 -2.727 1.00 1.59 C ATOM 325 CG2 VAL 31 0.693 5.483 -0.764 1.00 1.59 C ATOM 326 C VAL 31 -0.661 6.103 -3.599 1.00 1.59 C ATOM 327 O VAL 31 0.129 6.167 -4.553 1.00 1.59 O ATOM 328 N ARG 32 -1.544 7.063 -3.313 1.00 1.08 N ATOM 330 CA ARG 32 -1.545 8.378 -3.965 1.00 1.08 C ATOM 331 CB ARG 32 -2.893 8.651 -4.691 1.00 1.08 C ATOM 332 CG ARG 32 -4.208 8.563 -3.863 1.00 1.08 C ATOM 333 CD ARG 32 -4.877 9.936 -3.573 1.00 1.08 C ATOM 334 NE ARG 32 -4.078 10.821 -2.713 1.00 1.08 N ATOM 336 CZ ARG 32 -4.318 11.078 -1.424 1.00 1.08 C ATOM 337 NH1 ARG 32 -5.344 10.525 -0.788 1.00 1.08 N ATOM 340 NH2 ARG 32 -3.502 11.881 -0.756 1.00 1.08 N ATOM 343 C ARG 32 -1.233 9.471 -2.932 1.00 1.08 C ATOM 344 O ARG 32 -1.891 9.506 -1.883 1.00 1.08 O ATOM 345 N CYS 33 -0.115 10.194 -3.099 1.00 1.56 N ATOM 347 CA CYS 33 0.193 11.298 -2.172 1.00 1.56 C ATOM 348 CB CYS 33 1.104 10.780 -1.067 1.00 1.56 C ATOM 349 SG CYS 33 2.555 9.868 -1.637 1.00 1.56 S ATOM 350 C CYS 33 0.872 12.538 -2.754 1.00 1.56 C ATOM 351 O CYS 33 1.599 13.228 -2.025 1.00 1.56 O ATOM 352 N SER 34 0.621 12.887 -4.017 1.00 2.60 N ATOM 354 CA SER 34 1.273 14.086 -4.527 1.00 2.60 C ATOM 355 CB SER 34 1.871 13.796 -5.900 1.00 2.60 C ATOM 356 OG SER 34 2.880 12.811 -5.759 1.00 2.60 O ATOM 358 C SER 34 0.590 15.460 -4.494 1.00 2.60 C ATOM 359 O SER 34 1.282 16.456 -4.260 1.00 2.60 O ATOM 360 N ASP 35 -0.749 15.516 -4.619 1.00 7.51 N ATOM 362 CA ASP 35 -1.464 16.813 -4.600 1.00 7.51 C ATOM 363 CB ASP 35 -2.119 17.059 -5.980 1.00 7.51 C ATOM 364 CG ASP 35 -1.153 16.868 -7.145 1.00 7.51 C ATOM 365 OD1 ASP 35 -0.500 17.854 -7.552 1.00 7.51 O ATOM 366 OD2 ASP 35 -1.058 15.734 -7.666 1.00 7.51 O ATOM 367 C ASP 35 -2.516 17.139 -3.517 1.00 7.51 C ATOM 368 O ASP 35 -2.365 18.125 -2.788 1.00 7.51 O ATOM 369 N THR 36 -3.554 16.290 -3.415 1.00 12.84 N ATOM 371 CA THR 36 -4.696 16.432 -2.473 1.00 12.84 C ATOM 372 CB THR 36 -6.023 16.708 -3.249 1.00 12.84 C ATOM 373 OG1 THR 36 -6.226 15.690 -4.238 1.00 12.84 O ATOM 375 CG2 THR 36 -5.977 18.076 -3.930 1.00 12.84 C ATOM 376 C THR 36 -4.867 15.252 -1.491 1.00 12.84 C ATOM 377 O THR 36 -4.352 14.174 -1.771 1.00 12.84 O ATOM 378 N LYS 37 -5.629 15.424 -0.394 1.00 14.45 N ATOM 380 CA LYS 37 -5.834 14.339 0.599 1.00 14.45 C ATOM 381 CB LYS 37 -5.273 14.773 1.981 1.00 14.45 C ATOM 382 CG LYS 37 -5.738 16.142 2.516 1.00 14.45 C ATOM 383 CD LYS 37 -5.116 16.447 3.875 1.00 14.45 C ATOM 384 CE LYS 37 -5.563 17.799 4.425 1.00 14.45 C ATOM 385 NZ LYS 37 -7.005 17.840 4.811 1.00 14.45 N ATOM 389 C LYS 37 -7.237 13.668 0.765 1.00 14.45 C ATOM 390 O LYS 37 -7.868 13.794 1.825 1.00 14.45 O ATOM 391 N TYR 38 -7.722 12.990 -0.289 1.00 17.62 N ATOM 393 CA TYR 38 -9.000 12.233 -0.276 1.00 17.62 C ATOM 394 CB TYR 38 -10.110 12.952 -1.094 1.00 17.62 C ATOM 395 CG TYR 38 -11.566 12.588 -0.765 1.00 17.62 C ATOM 396 CD1 TYR 38 -12.285 13.279 0.242 1.00 17.62 C ATOM 397 CE1 TYR 38 -13.644 12.969 0.525 1.00 17.62 C ATOM 398 CD2 TYR 38 -12.246 11.575 -1.483 1.00 17.62 C ATOM 399 CE2 TYR 38 -13.606 11.258 -1.207 1.00 17.62 C ATOM 400 CZ TYR 38 -14.293 11.960 -0.203 1.00 17.62 C ATOM 401 OH TYR 38 -15.608 11.659 0.069 1.00 17.62 O ATOM 403 C TYR 38 -8.774 10.788 -0.794 1.00 17.62 C ATOM 404 O TYR 38 -7.783 10.541 -1.476 1.00 17.62 O ATOM 405 N THR 39 -9.701 9.858 -0.514 1.00 16.70 N ATOM 407 CA THR 39 -9.601 8.454 -0.983 1.00 16.70 C ATOM 408 CB THR 39 -10.158 7.451 0.061 1.00 16.70 C ATOM 409 OG1 THR 39 -11.307 8.013 0.708 1.00 16.70 O ATOM 411 CG2 THR 39 -9.093 7.108 1.087 1.00 16.70 C ATOM 412 C THR 39 -10.266 8.230 -2.371 1.00 16.70 C ATOM 413 O THR 39 -11.255 8.900 -2.695 1.00 16.70 O ATOM 414 N LEU 40 -9.760 7.248 -3.139 1.00 16.68 N ATOM 416 CA LEU 40 -10.218 6.922 -4.516 1.00 16.68 C ATOM 417 CB LEU 40 -9.181 6.025 -5.231 1.00 16.68 C ATOM 418 CG LEU 40 -7.791 6.521 -5.679 1.00 16.68 C ATOM 419 CD1 LEU 40 -6.841 5.336 -5.706 1.00 16.68 C ATOM 420 CD2 LEU 40 -7.812 7.215 -7.056 1.00 16.68 C ATOM 421 C LEU 40 -11.623 6.325 -4.735 1.00 16.68 C ATOM 422 O LEU 40 -12.110 5.535 -3.915 1.00 16.68 O ATOM 423 N CYS 41 -12.237 6.716 -5.865 1.00 20.99 N ATOM 425 CA CYS 41 -13.576 6.280 -6.308 1.00 20.99 C ATOM 426 CB CYS 41 -14.403 7.490 -6.771 1.00 20.99 C ATOM 427 SG CYS 41 -13.580 8.555 -7.988 1.00 20.99 S ATOM 428 C CYS 41 -13.468 5.256 -7.439 1.00 20.99 C ATOM 429 O CYS 41 -12.490 5.346 -8.214 1.00 20.99 O ATOM 430 OXT CYS 41 -14.349 4.375 -7.529 1.00 20.99 O TER END