####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS324_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS324_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 1 - 40 4.66 5.26 LCS_AVERAGE: 95.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 34 2 - 35 1.95 5.74 LONGEST_CONTINUOUS_SEGMENT: 34 3 - 36 1.81 5.65 LCS_AVERAGE: 73.11 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 6 - 24 0.94 5.52 LCS_AVERAGE: 30.81 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 6 40 0 3 4 4 5 19 29 33 33 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT Q 2 Q 2 3 34 40 0 3 4 4 5 10 14 26 33 34 36 36 36 36 37 38 38 38 38 38 LCS_GDT E 3 E 3 3 34 40 1 3 4 4 11 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT T 4 T 4 3 34 40 1 3 4 11 18 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT R 5 R 5 17 34 40 3 7 17 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT K 6 K 6 19 34 40 4 14 24 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT K 7 K 7 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT C 8 C 8 19 34 40 6 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT T 9 T 9 19 34 40 7 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT E 10 E 10 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT M 11 M 11 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT K 12 K 12 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT K 13 K 13 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT K 14 K 14 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT F 15 F 15 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT K 16 K 16 19 34 40 4 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT N 17 N 17 19 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT C 18 C 18 19 34 40 11 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT E 19 E 19 19 34 40 11 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT V 20 V 20 19 34 40 4 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT R 21 R 21 19 34 40 4 11 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT C 22 C 22 19 34 40 4 12 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT D 23 D 23 19 34 40 3 16 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT E 24 E 24 19 34 40 3 15 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT S 25 S 25 9 34 40 3 9 17 25 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT N 26 N 26 9 34 40 4 16 25 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT H 27 H 27 9 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT C 28 C 28 9 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT V 29 V 29 9 34 40 4 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT E 30 E 30 9 34 40 4 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT V 31 V 31 9 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT R 32 R 32 9 34 40 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT C 33 C 33 9 34 40 3 9 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT S 34 S 34 9 34 40 4 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT D 35 D 35 9 34 40 4 4 13 26 29 30 31 33 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT T 36 T 36 5 34 40 4 4 5 6 9 28 30 32 34 35 36 36 36 36 37 38 38 38 38 38 LCS_GDT K 37 K 37 5 7 40 4 4 5 6 7 7 9 10 12 15 19 26 31 36 37 38 38 38 38 38 LCS_GDT Y 38 Y 38 5 7 40 4 4 5 6 7 7 9 10 12 15 19 26 33 36 36 38 38 38 38 38 LCS_GDT T 39 T 39 5 7 40 4 4 5 6 7 7 9 10 12 13 14 17 18 21 25 28 30 33 37 38 LCS_GDT L 40 L 40 5 6 40 3 4 5 5 6 6 9 10 12 12 14 16 17 18 18 22 24 27 27 29 LCS_GDT C 41 C 41 4 6 13 3 3 4 5 6 6 7 10 12 13 15 17 19 21 22 23 28 29 29 34 LCS_AVERAGE LCS_A: 66.63 ( 30.81 73.11 95.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 18 26 29 30 32 32 33 34 35 36 36 36 36 37 38 38 38 38 38 GDT PERCENT_AT 29.27 43.90 63.41 70.73 73.17 78.05 78.05 80.49 82.93 85.37 87.80 87.80 87.80 87.80 90.24 92.68 92.68 92.68 92.68 92.68 GDT RMS_LOCAL 0.39 0.57 0.89 1.11 1.22 1.55 1.55 1.65 1.81 1.99 2.22 2.22 2.22 2.22 2.65 3.14 3.14 3.14 3.14 3.14 GDT RMS_ALL_AT 5.57 5.55 5.62 5.62 5.66 5.70 5.70 5.72 5.65 5.72 5.74 5.74 5.74 5.74 5.64 5.50 5.50 5.50 5.50 5.50 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 5.154 0 0.057 0.603 6.990 1.818 3.030 5.757 LGA Q 2 Q 2 6.385 0 0.267 0.932 12.891 0.000 0.000 12.891 LGA E 3 E 3 3.948 0 0.204 1.155 6.034 8.182 5.859 4.593 LGA T 4 T 4 3.805 0 0.171 1.343 6.611 14.545 12.987 6.611 LGA R 5 R 5 2.422 0 0.457 1.273 4.622 32.727 33.554 4.622 LGA K 6 K 6 1.524 0 0.022 0.719 2.965 66.364 52.727 2.965 LGA K 7 K 7 0.251 0 0.098 0.600 1.247 95.455 86.061 0.752 LGA C 8 C 8 0.755 0 0.048 0.087 1.609 81.818 73.939 1.609 LGA T 9 T 9 0.634 0 0.030 0.829 2.354 81.818 73.247 2.354 LGA E 10 E 10 0.630 0 0.033 0.661 2.939 86.364 67.475 2.939 LGA M 11 M 11 0.296 0 0.045 0.249 1.388 95.455 89.091 1.388 LGA K 12 K 12 0.672 0 0.021 0.858 3.597 77.727 61.818 3.597 LGA K 13 K 13 1.119 0 0.078 0.626 3.338 77.727 59.394 1.802 LGA K 14 K 14 0.677 0 0.015 0.134 1.132 81.818 80.000 1.132 LGA F 15 F 15 0.902 0 0.022 0.303 1.837 73.636 70.248 1.417 LGA K 16 K 16 1.286 0 0.091 1.007 4.544 65.455 45.455 4.544 LGA N 17 N 17 0.883 0 0.066 1.120 2.896 81.818 69.091 1.667 LGA C 18 C 18 1.017 0 0.060 0.088 1.181 73.636 70.909 1.120 LGA E 19 E 19 0.836 0 0.152 0.825 4.998 81.818 50.101 3.322 LGA V 20 V 20 1.318 0 0.055 0.300 1.717 61.818 59.221 1.622 LGA R 21 R 21 1.636 0 0.019 1.327 5.319 61.818 35.372 5.319 LGA C 22 C 22 1.549 0 0.129 0.262 2.053 58.182 56.061 2.053 LGA D 23 D 23 1.437 0 0.276 0.345 2.743 55.000 46.818 2.425 LGA E 24 E 24 1.594 0 0.143 1.067 3.737 48.636 40.202 3.737 LGA S 25 S 25 3.099 0 0.096 0.126 4.382 26.818 19.697 4.382 LGA N 26 N 26 1.645 0 0.429 1.227 6.580 52.727 29.773 6.580 LGA H 27 H 27 0.615 0 0.248 1.150 5.206 86.364 47.818 4.316 LGA C 28 C 28 0.832 0 0.078 0.857 3.961 86.364 70.303 3.961 LGA V 29 V 29 1.103 0 0.024 0.792 2.827 65.455 60.000 1.468 LGA E 30 E 30 1.043 0 0.128 0.890 4.522 61.818 44.646 4.522 LGA V 31 V 31 0.696 0 0.054 1.150 3.133 81.818 68.312 1.529 LGA R 32 R 32 0.707 0 0.062 0.926 4.441 77.727 54.876 4.441 LGA C 33 C 33 1.385 0 0.554 0.613 4.335 47.727 53.939 0.790 LGA S 34 S 34 1.201 0 0.542 0.938 4.800 44.091 53.939 0.876 LGA D 35 D 35 3.465 0 0.060 0.879 5.378 16.818 17.727 2.980 LGA T 36 T 36 4.707 0 0.137 0.913 6.220 7.273 5.974 3.836 LGA K 37 K 37 9.179 0 0.135 1.544 15.712 0.000 0.000 15.712 LGA Y 38 Y 38 11.274 0 0.086 1.209 16.141 0.000 0.000 16.141 LGA T 39 T 39 15.528 0 0.128 1.166 16.249 0.000 0.000 14.768 LGA L 40 L 40 18.982 0 0.127 0.582 21.509 0.000 0.000 21.146 LGA C 41 C 41 18.615 0 0.490 1.310 21.980 0.000 0.000 15.163 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.227 5.368 5.825 51.674 43.163 27.051 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 33 1.65 71.951 75.071 1.881 LGA_LOCAL RMSD: 1.655 Number of atoms: 33 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.715 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.227 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.130171 * X + 0.609322 * Y + -0.782165 * Z + -1.040548 Y_new = -0.935774 * X + 0.336230 * Y + 0.106194 * Z + 1.228184 Z_new = 0.327694 * X + 0.718106 * Y + 0.613955 * Z + -0.832122 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.432578 -0.333861 0.863427 [DEG: -82.0807 -19.1289 49.4707 ] ZXZ: -1.705741 0.909735 0.428106 [DEG: -97.7318 52.1240 24.5287 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS324_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS324_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 33 1.65 75.071 5.23 REMARK ---------------------------------------------------------- MOLECULE T0955TS324_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT 5kvnA ATOM 1 CB SER 1 -1.591 -18.605 3.287 1.00 9.79 C ATOM 2 OG SER 1 -1.458 -18.648 4.698 1.00 9.79 O ATOM 4 C SER 1 0.865 -18.488 2.590 1.00 9.79 C ATOM 5 O SER 1 1.379 -18.117 3.657 1.00 9.79 O ATOM 8 N SER 1 -0.172 -20.605 3.345 1.00 9.79 N ATOM 10 CA SER 1 -0.430 -19.339 2.606 1.00 9.79 C ATOM 11 N GLN 2 1.401 -18.224 1.383 1.00 10.16 N ATOM 13 CA GLN 2 2.665 -17.471 1.189 1.00 10.16 C ATOM 14 CB GLN 2 3.688 -18.364 0.461 1.00 10.16 C ATOM 15 CG GLN 2 4.291 -19.466 1.320 1.00 10.16 C ATOM 16 CD GLN 2 5.290 -20.317 0.561 1.00 10.16 C ATOM 17 OE1 GLN 2 6.486 -20.027 0.548 1.00 10.16 O ATOM 18 NE2 GLN 2 4.804 -21.376 -0.077 1.00 10.16 N ATOM 21 C GLN 2 2.826 -16.021 0.635 1.00 10.16 C ATOM 22 O GLN 2 3.609 -15.250 1.206 1.00 10.16 O ATOM 23 N GLU 3 2.091 -15.648 -0.428 1.00 9.64 N ATOM 25 CA GLU 3 2.264 -14.344 -1.139 1.00 9.64 C ATOM 26 CB GLU 3 2.406 -14.646 -2.648 1.00 9.64 C ATOM 27 CG GLU 3 3.794 -15.109 -3.071 1.00 9.64 C ATOM 28 CD GLU 3 3.890 -15.393 -4.558 1.00 9.64 C ATOM 29 OE1 GLU 3 3.636 -16.548 -4.964 1.00 9.64 O ATOM 30 OE2 GLU 3 4.222 -14.463 -5.324 1.00 9.64 O ATOM 31 C GLU 3 1.564 -12.938 -1.027 1.00 9.64 C ATOM 32 O GLU 3 2.202 -11.951 -1.423 1.00 9.64 O ATOM 33 N THR 4 0.348 -12.795 -0.470 1.00 9.38 N ATOM 35 CA THR 4 -0.372 -11.477 -0.476 1.00 9.38 C ATOM 36 CB THR 4 -1.926 -11.692 -0.606 1.00 9.38 C ATOM 37 OG1 THR 4 -2.293 -12.952 -0.032 1.00 9.38 O ATOM 39 CG2 THR 4 -2.374 -11.622 -2.059 1.00 9.38 C ATOM 40 C THR 4 -0.193 -10.223 0.424 1.00 9.38 C ATOM 41 O THR 4 -0.347 -9.107 -0.111 1.00 9.38 O ATOM 42 N ARG 5 0.170 -10.328 1.715 1.00 8.90 N ATOM 44 CA ARG 5 0.242 -9.085 2.522 1.00 8.90 C ATOM 45 CB ARG 5 -1.021 -9.009 3.436 1.00 8.90 C ATOM 46 CG ARG 5 -1.254 -10.152 4.448 1.00 8.90 C ATOM 47 CD ARG 5 -2.471 -9.904 5.335 1.00 8.90 C ATOM 48 NE ARG 5 -3.738 -9.985 4.601 1.00 8.90 N ATOM 50 CZ ARG 5 -4.946 -9.802 5.135 1.00 8.90 C ATOM 51 NH1 ARG 5 -6.021 -9.901 4.366 1.00 8.90 N ATOM 54 NH2 ARG 5 -5.095 -9.521 6.427 1.00 8.90 N ATOM 57 C ARG 5 1.493 -8.595 3.311 1.00 8.90 C ATOM 58 O ARG 5 1.417 -8.362 4.531 1.00 8.90 O ATOM 59 N LYS 6 2.623 -8.414 2.611 1.00 7.51 N ATOM 61 CA LYS 6 3.848 -7.829 3.196 1.00 7.51 C ATOM 62 CB LYS 6 5.131 -8.500 2.667 1.00 7.51 C ATOM 63 CG LYS 6 6.399 -8.251 3.515 1.00 7.51 C ATOM 64 CD LYS 6 7.614 -8.951 2.916 1.00 7.51 C ATOM 65 CE LYS 6 8.879 -8.719 3.738 1.00 7.51 C ATOM 66 NZ LYS 6 8.855 -9.388 5.073 1.00 7.51 N ATOM 70 C LYS 6 3.882 -6.308 2.946 1.00 7.51 C ATOM 71 O LYS 6 4.220 -5.522 3.838 1.00 7.51 O ATOM 72 N LYS 7 3.505 -5.946 1.711 1.00 7.07 N ATOM 74 CA LYS 7 3.511 -4.579 1.162 1.00 7.07 C ATOM 75 CB LYS 7 3.346 -4.634 -0.362 1.00 7.07 C ATOM 76 CG LYS 7 4.597 -5.064 -1.107 1.00 7.07 C ATOM 77 CD LYS 7 4.362 -5.097 -2.610 1.00 7.07 C ATOM 78 CE LYS 7 5.615 -5.529 -3.355 1.00 7.07 C ATOM 79 NZ LYS 7 5.400 -5.566 -4.827 1.00 7.07 N ATOM 83 C LYS 7 2.618 -3.467 1.740 1.00 7.07 C ATOM 84 O LYS 7 3.003 -2.293 1.671 1.00 7.07 O ATOM 85 N CYS 8 1.464 -3.820 2.324 1.00 6.69 N ATOM 87 CA CYS 8 0.529 -2.832 2.912 1.00 6.69 C ATOM 88 CB CYS 8 -0.786 -3.494 3.323 1.00 6.69 C ATOM 89 SG CYS 8 -1.961 -2.417 4.188 1.00 6.69 S ATOM 90 C CYS 8 1.129 -2.089 4.113 1.00 6.69 C ATOM 91 O CYS 8 0.965 -0.870 4.224 1.00 6.69 O ATOM 92 N THR 9 1.816 -2.829 4.996 1.00 6.27 N ATOM 94 CA THR 9 2.464 -2.255 6.190 1.00 6.27 C ATOM 95 CB THR 9 2.827 -3.333 7.242 1.00 6.27 C ATOM 96 OG1 THR 9 3.272 -4.525 6.583 1.00 6.27 O ATOM 98 CG2 THR 9 1.630 -3.635 8.119 1.00 6.27 C ATOM 99 C THR 9 3.708 -1.414 5.849 1.00 6.27 C ATOM 100 O THR 9 3.915 -0.351 6.448 1.00 6.27 O ATOM 101 N GLU 10 4.507 -1.885 4.878 1.00 6.08 N ATOM 103 CA GLU 10 5.724 -1.192 4.412 1.00 6.08 C ATOM 104 CB GLU 10 6.616 -2.128 3.599 1.00 6.08 C ATOM 105 CG GLU 10 7.563 -2.945 4.455 1.00 6.08 C ATOM 106 CD GLU 10 8.445 -3.870 3.637 1.00 6.08 C ATOM 107 OE1 GLU 10 9.549 -3.443 3.236 1.00 6.08 O ATOM 108 OE2 GLU 10 8.036 -5.026 3.397 1.00 6.08 O ATOM 109 C GLU 10 5.455 0.103 3.634 1.00 6.08 C ATOM 110 O GLU 10 6.163 1.099 3.831 1.00 6.08 O ATOM 111 N MET 11 4.427 0.080 2.770 1.00 5.20 N ATOM 113 CA MET 11 4.013 1.242 1.956 1.00 5.20 C ATOM 114 CG MET 11 3.579 0.244 -0.384 1.00 5.20 C ATOM 115 SD MET 11 4.361 1.442 -1.502 1.00 5.20 S ATOM 116 CE MET 11 6.099 1.080 -1.242 1.00 5.20 C ATOM 117 C MET 11 3.420 2.367 2.813 1.00 5.20 C ATOM 118 O MET 11 3.644 3.550 2.528 1.00 5.20 O ATOM 119 CB MET 11 2.991 0.835 0.889 1.00 5.20 C ATOM 120 N LYS 12 2.675 1.977 3.858 1.00 4.38 N ATOM 122 CA LYS 12 2.027 2.907 4.801 1.00 4.38 C ATOM 123 CB LYS 12 1.007 2.161 5.671 1.00 4.38 C ATOM 124 CG LYS 12 -0.292 2.925 5.932 1.00 4.38 C ATOM 125 CD LYS 12 -1.247 2.116 6.801 1.00 4.38 C ATOM 126 CE LYS 12 -2.552 2.860 7.074 1.00 4.38 C ATOM 127 NZ LYS 12 -3.413 3.020 5.863 1.00 4.38 N ATOM 131 C LYS 12 3.052 3.658 5.680 1.00 4.38 C ATOM 132 O LYS 12 2.850 4.838 5.994 1.00 4.38 O ATOM 133 N LYS 13 4.138 2.962 6.056 1.00 4.11 N ATOM 135 CA LYS 13 5.230 3.519 6.881 1.00 4.11 C ATOM 136 CB LYS 13 6.065 2.398 7.502 1.00 4.11 C ATOM 137 CG LYS 13 5.509 1.874 8.812 1.00 4.11 C ATOM 138 CD LYS 13 6.380 0.765 9.380 1.00 4.11 C ATOM 139 CE LYS 13 5.819 0.242 10.694 1.00 4.11 C ATOM 140 NZ LYS 13 6.662 -0.846 11.263 1.00 4.11 N ATOM 144 C LYS 13 6.150 4.494 6.123 1.00 4.11 C ATOM 145 O LYS 13 6.660 5.456 6.713 1.00 4.11 O ATOM 146 N LYS 14 6.333 4.235 4.820 1.00 4.30 N ATOM 148 CA LYS 14 7.171 5.045 3.911 1.00 4.30 C ATOM 149 CB LYS 14 7.535 4.243 2.655 1.00 4.30 C ATOM 150 CG LYS 14 8.498 3.098 2.889 1.00 4.30 C ATOM 151 CD LYS 14 8.803 2.358 1.591 1.00 4.30 C ATOM 152 CE LYS 14 9.774 1.199 1.803 1.00 4.30 C ATOM 153 NZ LYS 14 9.193 0.068 2.590 1.00 4.30 N ATOM 157 C LYS 14 6.502 6.359 3.481 1.00 4.30 C ATOM 158 O LYS 14 7.174 7.391 3.347 1.00 4.30 O ATOM 159 N PHE 15 5.180 6.293 3.281 1.00 1.75 N ATOM 161 CA PHE 15 4.343 7.422 2.843 1.00 1.75 C ATOM 162 CB PHE 15 3.675 7.065 1.480 1.00 1.75 C ATOM 163 CG PHE 15 4.642 6.581 0.393 1.00 1.75 C ATOM 164 CD1 PHE 15 4.925 5.203 0.234 1.00 1.75 C ATOM 165 CD2 PHE 15 5.243 7.499 -0.502 1.00 1.75 C ATOM 166 CE1 PHE 15 5.791 4.744 -0.797 1.00 1.75 C ATOM 167 CE2 PHE 15 6.111 7.055 -1.538 1.00 1.75 C ATOM 168 CZ PHE 15 6.385 5.673 -1.684 1.00 1.75 C ATOM 169 C PHE 15 3.284 7.772 3.922 1.00 1.75 C ATOM 170 O PHE 15 2.084 7.896 3.624 1.00 1.75 O ATOM 171 N LYS 16 3.770 8.066 5.136 1.00 1.15 N ATOM 173 CA LYS 16 2.950 8.378 6.339 1.00 1.15 C ATOM 174 CB LYS 16 3.858 8.462 7.584 1.00 1.15 C ATOM 175 CG LYS 16 5.130 9.307 7.443 1.00 1.15 C ATOM 176 CD LYS 16 5.936 9.312 8.732 1.00 1.15 C ATOM 177 CE LYS 16 7.196 10.148 8.593 1.00 1.15 C ATOM 178 NZ LYS 16 7.996 10.161 9.849 1.00 1.15 N ATOM 182 C LYS 16 1.924 9.547 6.334 1.00 1.15 C ATOM 183 O LYS 16 1.115 9.669 7.267 1.00 1.15 O ATOM 184 N ASN 17 1.947 10.368 5.278 1.00 1.06 N ATOM 186 CA ASN 17 1.032 11.518 5.120 1.00 1.06 C ATOM 187 CB ASN 17 1.815 12.759 4.654 1.00 1.06 C ATOM 188 CG ASN 17 2.916 13.168 5.627 1.00 1.06 C ATOM 189 OD1 ASN 17 4.060 12.723 5.513 1.00 1.06 O ATOM 190 ND2 ASN 17 2.575 14.032 6.580 1.00 1.06 N ATOM 193 C ASN 17 -0.058 11.168 4.091 1.00 1.06 C ATOM 194 O ASN 17 -1.085 11.854 3.985 1.00 1.06 O ATOM 195 N CYS 18 0.184 10.061 3.382 1.00 1.01 N ATOM 197 CA CYS 18 -0.661 9.504 2.317 1.00 1.01 C ATOM 198 CB CYS 18 0.243 8.937 1.232 1.00 1.01 C ATOM 199 SG CYS 18 1.527 10.079 0.756 1.00 1.01 S ATOM 200 C CYS 18 -1.690 8.441 2.730 1.00 1.01 C ATOM 201 O CYS 18 -1.651 7.927 3.852 1.00 1.01 O ATOM 202 N GLU 19 -2.660 8.196 1.839 1.00 1.79 N ATOM 204 CA GLU 19 -3.717 7.194 2.038 1.00 1.79 C ATOM 205 CB GLU 19 -5.100 7.816 1.823 1.00 1.79 C ATOM 206 CG GLU 19 -5.436 8.885 2.837 1.00 1.79 C ATOM 207 CD GLU 19 -6.808 9.495 2.617 1.00 1.79 C ATOM 208 OE1 GLU 19 -6.905 10.497 1.876 1.00 1.79 O ATOM 209 OE2 GLU 19 -7.791 8.976 3.188 1.00 1.79 O ATOM 210 C GLU 19 -3.507 5.987 1.106 1.00 1.79 C ATOM 211 O GLU 19 -3.544 6.129 -0.125 1.00 1.79 O ATOM 212 N VAL 20 -3.261 4.816 1.711 1.00 2.06 N ATOM 214 CA VAL 20 -3.020 3.552 0.989 1.00 2.06 C ATOM 215 CB VAL 20 -1.790 2.744 1.580 1.00 2.06 C ATOM 216 CG1 VAL 20 -1.105 1.916 0.482 1.00 2.06 C ATOM 217 CG2 VAL 20 -0.773 3.679 2.237 1.00 2.06 C ATOM 218 C VAL 20 -4.286 2.668 1.005 1.00 2.06 C ATOM 219 O VAL 20 -4.845 2.383 2.076 1.00 2.06 O ATOM 220 N ARG 21 -4.755 2.309 -0.197 1.00 2.27 N ATOM 222 CA ARG 21 -5.930 1.447 -0.404 1.00 2.27 C ATOM 223 CB ARG 21 -6.775 1.934 -1.587 1.00 2.27 C ATOM 224 CG ARG 21 -7.477 3.255 -1.353 1.00 2.27 C ATOM 225 CD ARG 21 -8.331 3.668 -2.552 1.00 2.27 C ATOM 226 NE ARG 21 -7.530 4.000 -3.735 1.00 2.27 N ATOM 228 CZ ARG 21 -7.989 4.040 -4.987 1.00 2.27 C ATOM 229 NH1 ARG 21 -9.261 3.768 -5.263 1.00 2.27 N ATOM 232 NH2 ARG 21 -7.164 4.357 -5.975 1.00 2.27 N ATOM 235 C ARG 21 -5.464 0.009 -0.649 1.00 2.27 C ATOM 236 O ARG 21 -4.665 -0.244 -1.563 1.00 2.27 O ATOM 237 N CYS 22 -5.942 -0.914 0.192 1.00 2.38 N ATOM 239 CA CYS 22 -5.583 -2.331 0.104 1.00 2.38 C ATOM 240 CB CYS 22 -4.998 -2.819 1.428 1.00 2.38 C ATOM 241 SG CYS 22 -3.384 -2.137 1.740 1.00 2.38 S ATOM 242 C CYS 22 -6.694 -3.274 -0.353 1.00 2.38 C ATOM 243 O CYS 22 -7.785 -3.306 0.232 1.00 2.38 O ATOM 244 N ASP 23 -6.394 -4.003 -1.432 1.00 2.54 N ATOM 246 CA ASP 23 -7.272 -5.012 -2.043 1.00 2.54 C ATOM 247 CB ASP 23 -7.551 -4.692 -3.518 1.00 2.54 C ATOM 248 CG ASP 23 -8.730 -3.753 -3.698 1.00 2.54 C ATOM 249 OD1 ASP 23 -9.873 -4.243 -3.838 1.00 2.54 O ATOM 250 OD2 ASP 23 -8.518 -2.520 -3.721 1.00 2.54 O ATOM 251 C ASP 23 -6.578 -6.371 -1.873 1.00 2.54 C ATOM 252 O ASP 23 -5.562 -6.662 -2.523 1.00 2.54 O ATOM 253 N GLU 24 -7.141 -7.171 -0.964 1.00 3.19 N ATOM 255 CA GLU 24 -6.656 -8.501 -0.552 1.00 3.19 C ATOM 256 CB GLU 24 -7.653 -9.127 0.423 1.00 3.19 C ATOM 257 CG GLU 24 -7.700 -8.471 1.792 1.00 3.19 C ATOM 258 CD GLU 24 -8.788 -9.047 2.679 1.00 3.19 C ATOM 259 OE1 GLU 24 -9.912 -8.502 2.673 1.00 3.19 O ATOM 260 OE2 GLU 24 -8.521 -10.042 3.386 1.00 3.19 O ATOM 261 C GLU 24 -6.184 -9.591 -1.532 1.00 3.19 C ATOM 262 O GLU 24 -5.065 -10.092 -1.365 1.00 3.19 O ATOM 263 N SER 25 -6.993 -9.937 -2.546 1.00 3.04 N ATOM 265 CA SER 25 -6.632 -11.017 -3.487 1.00 3.04 C ATOM 266 CB SER 25 -7.892 -11.810 -3.841 1.00 3.04 C ATOM 267 OG SER 25 -8.696 -11.995 -2.688 1.00 3.04 O ATOM 269 C SER 25 -5.911 -10.565 -4.768 1.00 3.04 C ATOM 270 O SER 25 -4.747 -10.933 -4.960 1.00 3.04 O ATOM 271 N ASN 26 -6.601 -9.819 -5.647 1.00 4.18 N ATOM 273 CA ASN 26 -6.018 -9.230 -6.876 1.00 4.18 C ATOM 274 CB ASN 26 -7.124 -8.682 -7.799 1.00 4.18 C ATOM 275 CG ASN 26 -8.098 -9.761 -8.260 1.00 4.18 C ATOM 276 OD1 ASN 26 -7.899 -10.391 -9.301 1.00 4.18 O ATOM 277 ND2 ASN 26 -9.166 -9.966 -7.493 1.00 4.18 N ATOM 280 C ASN 26 -5.067 -8.126 -6.344 1.00 4.18 C ATOM 281 O ASN 26 -5.276 -6.933 -6.593 1.00 4.18 O ATOM 282 N HIS 27 -3.949 -8.567 -5.759 1.00 3.16 N ATOM 284 CA HIS 27 -2.977 -7.718 -5.046 1.00 3.16 C ATOM 285 CG HIS 27 -1.234 -9.586 -5.131 1.00 3.16 C ATOM 286 CD2 HIS 27 -1.408 -10.906 -5.391 1.00 3.16 C ATOM 287 ND1 HIS 27 -0.113 -9.206 -5.840 1.00 3.16 N ATOM 289 CE1 HIS 27 0.369 -10.246 -6.497 1.00 3.16 C ATOM 290 NE2 HIS 27 -0.399 -11.290 -6.241 1.00 3.16 N ATOM 292 C HIS 27 -2.203 -6.580 -5.744 1.00 3.16 C ATOM 293 O HIS 27 -1.072 -6.750 -6.220 1.00 3.16 O ATOM 294 CB HIS 27 -2.007 -8.632 -4.267 1.00 3.16 C ATOM 295 N CYS 28 -2.834 -5.404 -5.730 1.00 2.45 N ATOM 297 CA CYS 28 -2.292 -4.168 -6.295 1.00 2.45 C ATOM 298 CB CYS 28 -3.140 -3.696 -7.479 1.00 2.45 C ATOM 299 SG CYS 28 -4.835 -3.270 -7.028 1.00 2.45 S ATOM 300 C CYS 28 -2.351 -3.126 -5.177 1.00 2.45 C ATOM 301 O CYS 28 -3.349 -3.059 -4.447 1.00 2.45 O ATOM 302 N VAL 29 -1.271 -2.357 -5.021 1.00 3.18 N ATOM 304 CA VAL 29 -1.190 -1.298 -4.006 1.00 3.18 C ATOM 305 CB VAL 29 -0.026 -1.514 -2.965 1.00 3.18 C ATOM 306 CG1 VAL 29 -0.570 -2.160 -1.713 1.00 3.18 C ATOM 307 CG2 VAL 29 1.122 -2.356 -3.552 1.00 3.18 C ATOM 308 C VAL 29 -1.098 0.090 -4.658 1.00 3.18 C ATOM 309 O VAL 29 -0.093 0.416 -5.306 1.00 3.18 O ATOM 310 N GLU 30 -2.203 0.842 -4.572 1.00 2.36 N ATOM 312 CA GLU 30 -2.296 2.206 -5.107 1.00 2.36 C ATOM 313 CB GLU 30 -3.440 2.355 -6.150 1.00 2.36 C ATOM 314 CG GLU 30 -4.891 2.038 -5.718 1.00 2.36 C ATOM 315 CD GLU 30 -5.320 0.606 -6.024 1.00 2.36 C ATOM 316 OE1 GLU 30 -5.865 0.368 -7.122 1.00 2.36 O ATOM 317 OE2 GLU 30 -5.112 -0.275 -5.163 1.00 2.36 O ATOM 318 C GLU 30 -2.429 3.189 -3.932 1.00 2.36 C ATOM 319 O GLU 30 -3.427 3.169 -3.198 1.00 2.36 O ATOM 320 N VAL 31 -1.367 3.970 -3.722 1.00 1.91 N ATOM 322 CA VAL 31 -1.277 4.966 -2.648 1.00 1.91 C ATOM 323 CB VAL 31 0.071 4.771 -1.816 1.00 1.91 C ATOM 324 CG1 VAL 31 1.313 4.823 -2.714 1.00 1.91 C ATOM 325 CG2 VAL 31 0.168 5.749 -0.636 1.00 1.91 C ATOM 326 C VAL 31 -1.461 6.392 -3.218 1.00 1.91 C ATOM 327 O VAL 31 -1.033 6.671 -4.345 1.00 1.91 O ATOM 328 N ARG 32 -2.126 7.253 -2.436 1.00 1.37 N ATOM 330 CA ARG 32 -2.397 8.653 -2.794 1.00 1.37 C ATOM 331 CB ARG 32 -3.824 9.039 -2.389 1.00 1.37 C ATOM 332 CG ARG 32 -4.862 8.845 -3.465 1.00 1.37 C ATOM 333 CD ARG 32 -6.213 9.356 -2.989 1.00 1.37 C ATOM 334 NE ARG 32 -7.206 9.402 -4.064 1.00 1.37 N ATOM 336 CZ ARG 32 -8.356 10.073 -4.014 1.00 1.37 C ATOM 337 NH1 ARG 32 -8.696 10.778 -2.938 1.00 1.37 N ATOM 340 NH2 ARG 32 -9.174 10.048 -5.056 1.00 1.37 N ATOM 343 C ARG 32 -1.384 9.615 -2.150 1.00 1.37 C ATOM 344 O ARG 32 -1.453 9.895 -0.949 1.00 1.37 O ATOM 345 N CYS 33 -0.487 10.144 -2.990 1.00 1.28 N ATOM 347 CA CYS 33 0.574 11.097 -2.621 1.00 1.28 C ATOM 348 CB CYS 33 1.947 10.608 -3.112 1.00 1.28 C ATOM 349 SG CYS 33 2.952 9.760 -1.887 1.00 1.28 S ATOM 350 C CYS 33 0.176 12.429 -3.282 1.00 1.28 C ATOM 351 O CYS 33 0.411 12.636 -4.479 1.00 1.28 O ATOM 352 N SER 34 -0.518 13.272 -2.500 1.00 2.84 N ATOM 354 CA SER 34 -1.066 14.586 -2.913 1.00 2.84 C ATOM 355 CB SER 34 -1.887 15.190 -1.759 1.00 2.84 C ATOM 356 OG SER 34 -1.058 15.624 -0.695 1.00 2.84 O ATOM 358 C SER 34 -0.121 15.655 -3.532 1.00 2.84 C ATOM 359 O SER 34 -0.144 16.826 -3.127 1.00 2.84 O ATOM 360 N ASP 35 0.729 15.225 -4.475 1.00 4.05 N ATOM 362 CA ASP 35 1.679 16.093 -5.184 1.00 4.05 C ATOM 363 CB ASP 35 3.071 15.440 -5.202 1.00 4.05 C ATOM 364 CG ASP 35 4.205 16.452 -5.273 1.00 4.05 C ATOM 365 OD1 ASP 35 4.691 16.886 -4.205 1.00 4.05 O ATOM 366 OD2 ASP 35 4.625 16.805 -6.398 1.00 4.05 O ATOM 367 C ASP 35 1.225 16.386 -6.631 1.00 4.05 C ATOM 368 O ASP 35 1.337 17.528 -7.086 1.00 4.05 O ATOM 369 N THR 36 0.713 15.358 -7.328 1.00 7.25 N ATOM 371 CA THR 36 0.253 15.456 -8.731 1.00 7.25 C ATOM 372 CB THR 36 0.862 14.310 -9.605 1.00 7.25 C ATOM 373 OG1 THR 36 0.604 13.041 -8.989 1.00 7.25 O ATOM 375 CG2 THR 36 2.365 14.496 -9.773 1.00 7.25 C ATOM 376 C THR 36 -1.285 15.477 -8.871 1.00 7.25 C ATOM 377 O THR 36 -1.989 14.984 -7.986 1.00 7.25 O ATOM 378 N LYS 37 -1.790 16.051 -9.976 1.00 10.92 N ATOM 380 CA LYS 37 -3.238 16.168 -10.239 1.00 10.92 C ATOM 381 CB LYS 37 -3.596 17.597 -10.681 1.00 10.92 C ATOM 382 CG LYS 37 -3.663 18.611 -9.551 1.00 10.92 C ATOM 383 CD LYS 37 -4.021 19.999 -10.072 1.00 10.92 C ATOM 384 CE LYS 37 -4.094 21.034 -8.951 1.00 10.92 C ATOM 385 NZ LYS 37 -5.244 20.826 -8.020 1.00 10.92 N ATOM 389 C LYS 37 -3.892 15.141 -11.191 1.00 10.92 C ATOM 390 O LYS 37 -3.699 15.187 -12.414 1.00 10.92 O ATOM 391 N TYR 38 -4.588 14.170 -10.584 1.00 13.83 N ATOM 393 CA TYR 38 -5.355 13.101 -11.257 1.00 13.83 C ATOM 394 CB TYR 38 -4.786 11.688 -10.931 1.00 13.83 C ATOM 395 CG TYR 38 -5.249 10.519 -11.823 1.00 13.83 C ATOM 396 CD1 TYR 38 -4.529 10.158 -12.989 1.00 13.83 C ATOM 397 CE1 TYR 38 -4.934 9.059 -13.797 1.00 13.83 C ATOM 398 CD2 TYR 38 -6.390 9.749 -11.486 1.00 13.83 C ATOM 399 CE2 TYR 38 -6.803 8.648 -12.289 1.00 13.83 C ATOM 400 CZ TYR 38 -6.069 8.314 -13.438 1.00 13.83 C ATOM 401 OH TYR 38 -6.466 7.249 -14.215 1.00 13.83 O ATOM 403 C TYR 38 -6.808 13.246 -10.739 1.00 13.83 C ATOM 404 O TYR 38 -7.040 13.976 -9.769 1.00 13.83 O ATOM 405 N THR 39 -7.768 12.573 -11.389 1.00 16.97 N ATOM 407 CA THR 39 -9.201 12.616 -11.010 1.00 16.97 C ATOM 408 CB THR 39 -10.127 12.372 -12.266 1.00 16.97 C ATOM 409 OG1 THR 39 -11.495 12.235 -11.855 1.00 16.97 O ATOM 411 CG2 THR 39 -9.687 11.133 -13.070 1.00 16.97 C ATOM 412 C THR 39 -9.510 11.626 -9.841 1.00 16.97 C ATOM 413 O THR 39 -8.985 10.505 -9.826 1.00 16.97 O ATOM 414 N LEU 40 -10.429 12.024 -8.943 1.00 18.68 N ATOM 416 CA LEU 40 -10.806 11.268 -7.719 1.00 18.68 C ATOM 417 CB LEU 40 -11.564 12.188 -6.736 1.00 18.68 C ATOM 418 CG LEU 40 -10.844 13.301 -5.949 1.00 18.68 C ATOM 419 CD1 LEU 40 -11.673 14.575 -6.005 1.00 18.68 C ATOM 420 CD2 LEU 40 -10.583 12.894 -4.490 1.00 18.68 C ATOM 421 C LEU 40 -11.545 9.918 -7.812 1.00 18.68 C ATOM 422 O LEU 40 -12.433 9.731 -8.655 1.00 18.68 O ATOM 423 N CYS 41 -11.157 9.005 -6.905 1.00 18.40 N ATOM 425 CA CYS 41 -11.697 7.640 -6.761 1.00 18.40 C ATOM 426 CB CYS 41 -10.547 6.639 -6.568 1.00 18.40 C ATOM 427 SG CYS 41 -9.345 7.105 -5.288 1.00 18.40 S ATOM 428 C CYS 41 -12.665 7.555 -5.578 1.00 18.40 C ATOM 429 O CYS 41 -12.448 8.291 -4.592 1.00 18.40 O ATOM 430 OXT CYS 41 -13.630 6.765 -5.660 1.00 18.40 O TER END