####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS324_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS324_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 1 - 39 4.56 7.19 LCS_AVERAGE: 91.79 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 4 - 36 1.77 7.44 LONGEST_CONTINUOUS_SEGMENT: 33 5 - 37 1.86 7.33 LCS_AVERAGE: 70.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 6 - 32 0.98 7.44 LONGEST_CONTINUOUS_SEGMENT: 27 7 - 33 1.00 7.45 LCS_AVERAGE: 48.96 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 5 39 0 3 4 5 7 7 8 8 12 15 17 18 25 26 31 32 34 37 37 37 LCS_GDT Q 2 Q 2 3 5 39 0 3 4 5 11 21 23 28 31 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT E 3 E 3 3 32 39 2 3 4 5 7 7 23 26 30 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT T 4 T 4 3 33 39 2 3 4 5 7 21 30 30 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT R 5 R 5 16 33 39 3 3 5 16 24 30 30 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT K 6 K 6 27 33 39 5 18 26 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT K 7 K 7 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT C 8 C 8 27 33 39 7 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT T 9 T 9 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT E 10 E 10 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT M 11 M 11 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT K 12 K 12 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT K 13 K 13 27 33 39 7 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT K 14 K 14 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT F 15 F 15 27 33 39 8 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT K 16 K 16 27 33 39 4 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT N 17 N 17 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT C 18 C 18 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT E 19 E 19 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT V 20 V 20 27 33 39 6 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT R 21 R 21 27 33 39 6 18 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT C 22 C 22 27 33 39 5 13 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT D 23 D 23 27 33 39 4 13 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT E 24 E 24 27 33 39 6 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT S 25 S 25 27 33 39 10 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT N 26 N 26 27 33 39 3 4 16 27 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT H 27 H 27 27 33 39 5 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT C 28 C 28 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT V 29 V 29 27 33 39 10 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT E 30 E 30 27 33 39 10 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT V 31 V 31 27 33 39 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT R 32 R 32 27 33 39 8 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT C 33 C 33 27 33 39 4 16 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT S 34 S 34 8 33 39 5 20 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT D 35 D 35 5 33 39 4 4 8 15 27 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT T 36 T 36 5 33 39 4 4 5 13 28 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT K 37 K 37 5 33 39 4 4 5 5 6 6 10 15 32 33 34 35 36 36 36 36 36 37 37 37 LCS_GDT Y 38 Y 38 5 6 39 4 4 5 5 6 6 8 8 9 10 15 21 25 33 34 34 35 36 37 37 LCS_GDT T 39 T 39 4 6 39 3 4 4 5 6 6 8 8 9 9 10 10 12 13 17 18 19 21 26 28 LCS_GDT L 40 L 40 4 5 11 3 4 4 5 5 5 8 8 9 9 9 10 10 10 11 12 12 13 16 19 LCS_GDT C 41 C 41 3 5 11 3 3 4 4 5 5 8 8 9 9 9 10 10 10 10 12 12 13 13 13 LCS_AVERAGE LCS_A: 70.43 ( 48.96 70.55 91.79 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 21 27 28 29 30 31 32 33 33 34 35 36 36 36 36 36 37 37 37 GDT PERCENT_AT 26.83 51.22 65.85 68.29 70.73 73.17 75.61 78.05 80.49 80.49 82.93 85.37 87.80 87.80 87.80 87.80 87.80 90.24 90.24 90.24 GDT RMS_LOCAL 0.36 0.59 0.88 0.93 1.06 1.25 1.42 1.56 1.77 1.77 2.28 2.40 2.60 2.60 2.60 2.60 2.60 3.15 3.16 3.15 GDT RMS_ALL_AT 7.42 7.39 7.38 7.38 7.44 7.45 7.38 7.39 7.44 7.44 7.55 7.53 7.46 7.46 7.46 7.46 7.46 7.48 7.34 7.48 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 12.943 0 0.051 0.650 15.628 0.000 0.000 14.753 LGA Q 2 Q 2 7.844 0 0.259 0.927 9.946 0.000 0.000 7.740 LGA E 3 E 3 8.192 0 0.210 1.222 11.961 0.000 0.000 11.955 LGA T 4 T 4 5.217 0 0.145 1.341 6.513 0.455 2.078 4.856 LGA R 5 R 5 3.784 0 0.592 0.931 12.990 23.182 8.430 12.990 LGA K 6 K 6 1.516 0 0.217 1.097 5.731 55.000 36.970 5.731 LGA K 7 K 7 0.310 0 0.076 0.770 2.696 95.455 76.768 2.696 LGA C 8 C 8 0.730 0 0.040 0.049 1.253 81.818 76.364 1.253 LGA T 9 T 9 0.602 0 0.034 0.907 2.635 90.909 76.883 2.635 LGA E 10 E 10 0.505 0 0.023 0.711 3.097 95.455 69.091 3.097 LGA M 11 M 11 0.163 0 0.035 0.236 1.145 100.000 93.409 1.145 LGA K 12 K 12 0.572 0 0.026 0.547 1.336 82.273 74.747 1.336 LGA K 13 K 13 0.966 0 0.082 0.614 3.051 81.818 62.828 1.498 LGA K 14 K 14 0.545 0 0.024 0.573 2.043 86.364 78.990 2.043 LGA F 15 F 15 0.749 0 0.016 0.288 1.550 77.727 74.545 1.126 LGA K 16 K 16 0.988 0 0.103 1.122 4.246 77.727 56.566 4.246 LGA N 17 N 17 0.804 0 0.073 1.119 2.917 81.818 69.091 1.621 LGA C 18 C 18 1.040 0 0.058 0.086 1.173 69.545 68.182 1.123 LGA E 19 E 19 0.933 0 0.148 0.804 4.522 81.818 53.131 2.840 LGA V 20 V 20 1.400 0 0.024 0.306 1.738 61.818 61.299 1.410 LGA R 21 R 21 1.512 0 0.072 1.018 4.572 54.545 49.421 1.957 LGA C 22 C 22 1.407 0 0.099 0.341 3.311 65.455 57.576 3.311 LGA D 23 D 23 1.651 0 0.274 1.166 2.897 48.636 43.636 2.120 LGA E 24 E 24 1.058 0 0.052 0.738 4.403 65.455 47.677 4.403 LGA S 25 S 25 1.283 0 0.516 0.881 2.018 65.455 60.909 2.018 LGA N 26 N 26 3.216 0 0.456 0.980 6.672 36.818 18.409 6.672 LGA H 27 H 27 1.085 0 0.368 1.476 4.505 73.636 50.000 4.259 LGA C 28 C 28 0.574 0 0.105 0.861 3.478 90.909 77.273 3.478 LGA V 29 V 29 0.642 0 0.040 1.123 2.641 81.818 67.792 2.641 LGA E 30 E 30 0.564 0 0.147 0.729 3.320 78.636 56.364 3.320 LGA V 31 V 31 0.575 0 0.038 1.082 2.721 95.455 77.403 1.764 LGA R 32 R 32 0.360 0 0.062 1.356 6.204 86.818 57.851 6.204 LGA C 33 C 33 1.493 0 0.550 0.630 4.533 46.818 53.333 0.840 LGA S 34 S 34 1.008 0 0.379 0.790 3.648 49.091 60.000 0.831 LGA D 35 D 35 3.771 0 0.092 0.852 5.546 15.455 8.864 5.546 LGA T 36 T 36 3.424 0 0.244 0.704 5.143 13.182 17.403 1.510 LGA K 37 K 37 6.120 0 0.212 1.477 8.284 0.000 0.000 5.787 LGA Y 38 Y 38 10.986 0 0.193 1.391 14.839 0.000 0.000 14.839 LGA T 39 T 39 18.124 0 0.259 0.359 21.428 0.000 0.000 17.026 LGA L 40 L 40 24.197 0 0.085 1.368 27.203 0.000 0.000 26.453 LGA C 41 C 41 27.664 0 0.230 0.739 31.950 0.000 0.000 24.804 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 6.996 7.206 7.414 53.936 44.958 27.805 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 32 1.56 71.341 73.447 1.932 LGA_LOCAL RMSD: 1.557 Number of atoms: 32 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.389 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.996 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.089042 * X + 0.517327 * Y + -0.851143 * Z + -0.653044 Y_new = -0.889911 * X + 0.342488 * Y + 0.301263 * Z + 1.816706 Z_new = 0.447358 * X + 0.784267 * Y + 0.429880 * Z + -1.406714 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.670521 -0.463809 1.069390 [DEG: -95.7138 -26.5743 61.2716 ] ZXZ: -1.910987 1.126437 0.518382 [DEG: -109.4915 64.5401 29.7011 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS324_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS324_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 32 1.56 73.447 7.00 REMARK ---------------------------------------------------------- MOLECULE T0955TS324_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT 5kvnA ATOM 1 CB SER 1 -7.369 -5.715 3.243 1.00 24.40 C ATOM 2 OG SER 1 -6.529 -4.572 3.247 1.00 24.40 O ATOM 4 C SER 1 -6.579 -6.632 5.487 1.00 24.40 C ATOM 5 O SER 1 -5.633 -5.872 5.745 1.00 24.40 O ATOM 8 N SER 1 -8.403 -4.941 5.345 1.00 24.40 N ATOM 10 CA SER 1 -7.784 -6.114 4.665 1.00 24.40 C ATOM 11 N GLN 2 -6.643 -7.902 5.923 1.00 20.92 N ATOM 13 CA GLN 2 -5.589 -8.535 6.759 1.00 20.92 C ATOM 14 CB GLN 2 -6.207 -9.013 8.086 1.00 20.92 C ATOM 15 CG GLN 2 -6.558 -7.891 9.055 1.00 20.92 C ATOM 16 CD GLN 2 -7.162 -8.404 10.348 1.00 20.92 C ATOM 17 OE1 GLN 2 -6.450 -8.669 11.316 1.00 20.92 O ATOM 18 NE2 GLN 2 -8.483 -8.549 10.370 1.00 20.92 N ATOM 21 C GLN 2 -4.532 -9.596 6.307 1.00 20.92 C ATOM 22 O GLN 2 -3.370 -9.477 6.714 1.00 20.92 O ATOM 23 N GLU 3 -4.901 -10.586 5.472 1.00 14.06 N ATOM 25 CA GLU 3 -3.998 -11.723 5.098 1.00 14.06 C ATOM 26 CB GLU 3 -4.777 -13.038 5.310 1.00 14.06 C ATOM 27 CG GLU 3 -4.860 -13.493 6.762 1.00 14.06 C ATOM 28 CD GLU 3 -5.634 -14.789 6.927 1.00 14.06 C ATOM 29 OE1 GLU 3 -5.008 -15.869 6.868 1.00 14.06 O ATOM 30 OE2 GLU 3 -6.866 -14.727 7.119 1.00 14.06 O ATOM 31 C GLU 3 -2.993 -11.986 3.919 1.00 14.06 C ATOM 32 O GLU 3 -2.098 -12.820 4.129 1.00 14.06 O ATOM 33 N THR 4 -3.037 -11.316 2.750 1.00 10.83 N ATOM 35 CA THR 4 -2.107 -11.723 1.645 1.00 10.83 C ATOM 36 CB THR 4 -2.793 -11.588 0.241 1.00 10.83 C ATOM 37 OG1 THR 4 -3.757 -10.529 0.269 1.00 10.83 O ATOM 39 CG2 THR 4 -3.458 -12.902 -0.175 1.00 10.83 C ATOM 40 C THR 4 -0.610 -11.359 1.439 1.00 10.83 C ATOM 41 O THR 4 0.159 -12.273 1.087 1.00 10.83 O ATOM 42 N ARG 5 -0.157 -10.118 1.693 1.00 10.79 N ATOM 44 CA ARG 5 1.280 -9.751 1.514 1.00 10.79 C ATOM 45 CB ARG 5 1.691 -9.629 0.029 1.00 10.79 C ATOM 46 CG ARG 5 2.399 -10.857 -0.547 1.00 10.79 C ATOM 47 CD ARG 5 3.077 -10.567 -1.888 1.00 10.79 C ATOM 48 NE ARG 5 2.124 -10.334 -2.977 1.00 10.79 N ATOM 50 CZ ARG 5 2.452 -10.038 -4.235 1.00 10.79 C ATOM 51 NH1 ARG 5 1.495 -9.848 -5.132 1.00 10.79 N ATOM 54 NH2 ARG 5 3.724 -9.928 -4.608 1.00 10.79 N ATOM 57 C ARG 5 1.887 -8.591 2.321 1.00 10.79 C ATOM 58 O ARG 5 1.280 -7.525 2.443 1.00 10.79 O ATOM 59 N LYS 6 3.170 -8.750 2.672 1.00 8.99 N ATOM 61 CA LYS 6 3.966 -7.794 3.473 1.00 8.99 C ATOM 62 CB LYS 6 5.356 -8.389 3.757 1.00 8.99 C ATOM 63 CG LYS 6 5.384 -9.485 4.807 1.00 8.99 C ATOM 64 CD LYS 6 6.798 -10.012 5.020 1.00 8.99 C ATOM 65 CE LYS 6 6.849 -11.117 6.072 1.00 8.99 C ATOM 66 NZ LYS 6 6.564 -10.637 7.458 1.00 8.99 N ATOM 70 C LYS 6 4.137 -6.358 2.926 1.00 8.99 C ATOM 71 O LYS 6 4.648 -5.482 3.642 1.00 8.99 O ATOM 72 N LYS 7 3.663 -6.110 1.697 1.00 8.01 N ATOM 74 CA LYS 7 3.769 -4.788 1.047 1.00 8.01 C ATOM 75 CB LYS 7 3.680 -4.914 -0.477 1.00 8.01 C ATOM 76 CG LYS 7 4.981 -5.358 -1.130 1.00 8.01 C ATOM 77 CD LYS 7 4.835 -5.466 -2.644 1.00 8.01 C ATOM 78 CE LYS 7 6.131 -5.911 -3.319 1.00 8.01 C ATOM 79 NZ LYS 7 7.217 -4.887 -3.259 1.00 8.01 N ATOM 83 C LYS 7 2.836 -3.670 1.558 1.00 8.01 C ATOM 84 O LYS 7 3.183 -2.488 1.434 1.00 8.01 O ATOM 85 N CYS 8 1.688 -4.036 2.154 1.00 7.49 N ATOM 87 CA CYS 8 0.720 -3.057 2.706 1.00 7.49 C ATOM 88 CB CYS 8 -0.597 -3.732 3.097 1.00 7.49 C ATOM 89 SG CYS 8 -1.928 -2.582 3.547 1.00 7.49 S ATOM 90 C CYS 8 1.284 -2.320 3.935 1.00 7.49 C ATOM 91 O CYS 8 1.142 -1.095 4.043 1.00 7.49 O ATOM 92 N THR 9 1.936 -3.077 4.833 1.00 6.96 N ATOM 94 CA THR 9 2.543 -2.542 6.067 1.00 6.96 C ATOM 95 CB THR 9 2.867 -3.665 7.092 1.00 6.96 C ATOM 96 OG1 THR 9 3.522 -4.754 6.429 1.00 6.96 O ATOM 98 CG2 THR 9 1.593 -4.155 7.761 1.00 6.96 C ATOM 99 C THR 9 3.796 -1.687 5.794 1.00 6.96 C ATOM 100 O THR 9 3.990 -0.651 6.445 1.00 6.96 O ATOM 101 N GLU 10 4.619 -2.117 4.823 1.00 6.75 N ATOM 103 CA GLU 10 5.846 -1.404 4.408 1.00 6.75 C ATOM 104 CB GLU 10 6.756 -2.306 3.571 1.00 6.75 C ATOM 105 CG GLU 10 7.607 -3.253 4.400 1.00 6.75 C ATOM 106 CD GLU 10 8.501 -4.136 3.550 1.00 6.75 C ATOM 107 OE1 GLU 10 9.647 -3.728 3.265 1.00 6.75 O ATOM 108 OE2 GLU 10 8.059 -5.241 3.167 1.00 6.75 O ATOM 109 C GLU 10 5.571 -0.086 3.663 1.00 6.75 C ATOM 110 O GLU 10 6.236 0.923 3.932 1.00 6.75 O ATOM 111 N MET 11 4.592 -0.110 2.745 1.00 5.54 N ATOM 113 CA MET 11 4.178 1.065 1.948 1.00 5.54 C ATOM 114 CG MET 11 3.956 0.135 -0.442 1.00 5.54 C ATOM 115 SD MET 11 4.801 1.388 -1.447 1.00 5.54 S ATOM 116 CE MET 11 6.520 1.024 -1.077 1.00 5.54 C ATOM 117 C MET 11 3.497 2.143 2.802 1.00 5.54 C ATOM 118 O MET 11 3.653 3.343 2.534 1.00 5.54 O ATOM 119 CB MET 11 3.249 0.659 0.800 1.00 5.54 C ATOM 120 N LYS 12 2.757 1.696 3.827 1.00 4.62 N ATOM 122 CA LYS 12 2.033 2.570 4.772 1.00 4.62 C ATOM 123 CB LYS 12 1.063 1.741 5.624 1.00 4.62 C ATOM 124 CG LYS 12 -0.281 2.412 5.904 1.00 4.62 C ATOM 125 CD LYS 12 -1.176 1.524 6.752 1.00 4.62 C ATOM 126 CE LYS 12 -2.512 2.191 7.030 1.00 4.62 C ATOM 127 NZ LYS 12 -3.400 1.331 7.861 1.00 4.62 N ATOM 131 C LYS 12 3.007 3.360 5.673 1.00 4.62 C ATOM 132 O LYS 12 2.755 4.532 5.983 1.00 4.62 O ATOM 133 N LYS 13 4.108 2.703 6.073 1.00 4.32 N ATOM 135 CA LYS 13 5.162 3.288 6.926 1.00 4.32 C ATOM 136 CB LYS 13 6.013 2.185 7.563 1.00 4.32 C ATOM 137 CG LYS 13 5.394 1.569 8.804 1.00 4.32 C ATOM 138 CD LYS 13 6.285 0.483 9.387 1.00 4.32 C ATOM 139 CE LYS 13 5.663 -0.133 10.630 1.00 4.32 C ATOM 140 NZ LYS 13 6.525 -1.198 11.213 1.00 4.32 N ATOM 144 C LYS 13 6.074 4.298 6.205 1.00 4.32 C ATOM 145 O LYS 13 6.544 5.263 6.823 1.00 4.32 O ATOM 146 N LYS 14 6.294 4.068 4.903 1.00 4.48 N ATOM 148 CA LYS 14 7.136 4.913 4.030 1.00 4.48 C ATOM 149 CB LYS 14 7.565 4.137 2.778 1.00 4.48 C ATOM 150 CG LYS 14 8.541 3.006 3.032 1.00 4.48 C ATOM 151 CD LYS 14 8.911 2.292 1.737 1.00 4.48 C ATOM 152 CE LYS 14 9.895 1.147 1.971 1.00 4.48 C ATOM 153 NZ LYS 14 11.255 1.604 2.386 1.00 4.48 N ATOM 157 C LYS 14 6.465 6.225 3.595 1.00 4.48 C ATOM 158 O LYS 14 7.123 7.270 3.526 1.00 4.48 O ATOM 159 N PHE 15 5.158 6.142 3.317 1.00 1.61 N ATOM 161 CA PHE 15 4.328 7.268 2.861 1.00 1.61 C ATOM 162 CB PHE 15 3.729 6.931 1.462 1.00 1.61 C ATOM 163 CG PHE 15 4.744 6.431 0.428 1.00 1.61 C ATOM 164 CD1 PHE 15 5.409 7.339 -0.433 1.00 1.61 C ATOM 165 CD2 PHE 15 5.011 5.048 0.283 1.00 1.61 C ATOM 166 CE1 PHE 15 6.323 6.880 -1.421 1.00 1.61 C ATOM 167 CE2 PHE 15 5.923 4.574 -0.700 1.00 1.61 C ATOM 168 CZ PHE 15 6.581 5.493 -1.554 1.00 1.61 C ATOM 169 C PHE 15 3.217 7.580 3.898 1.00 1.61 C ATOM 170 O PHE 15 2.028 7.674 3.553 1.00 1.61 O ATOM 171 N LYS 16 3.644 7.861 5.138 1.00 1.20 N ATOM 173 CA LYS 16 2.769 8.137 6.308 1.00 1.20 C ATOM 174 CB LYS 16 3.617 8.200 7.596 1.00 1.20 C ATOM 175 CG LYS 16 4.895 9.042 7.528 1.00 1.20 C ATOM 176 CD LYS 16 5.641 9.024 8.858 1.00 1.20 C ATOM 177 CE LYS 16 6.919 9.859 8.813 1.00 1.20 C ATOM 178 NZ LYS 16 6.671 11.327 8.702 1.00 1.20 N ATOM 182 C LYS 16 1.727 9.292 6.280 1.00 1.20 C ATOM 183 O LYS 16 0.921 9.425 7.216 1.00 1.20 O ATOM 184 N ASN 17 1.728 10.085 5.203 1.00 0.92 N ATOM 186 CA ASN 17 0.791 11.214 5.024 1.00 0.92 C ATOM 187 CB ASN 17 1.556 12.471 4.564 1.00 0.92 C ATOM 188 CG ASN 17 2.632 12.906 5.552 1.00 0.92 C ATOM 189 OD1 ASN 17 3.787 12.485 5.458 1.00 0.92 O ATOM 190 ND2 ASN 17 2.259 13.768 6.494 1.00 0.92 N ATOM 193 C ASN 17 -0.278 10.835 3.983 1.00 0.92 C ATOM 194 O ASN 17 -1.304 11.516 3.841 1.00 0.92 O ATOM 195 N CYS 18 -0.021 9.710 3.309 1.00 0.88 N ATOM 197 CA CYS 18 -0.847 9.125 2.244 1.00 0.88 C ATOM 198 CB CYS 18 0.073 8.525 1.191 1.00 0.88 C ATOM 199 SG CYS 18 1.381 9.633 0.720 1.00 0.88 S ATOM 200 C CYS 18 -1.883 8.075 2.667 1.00 0.88 C ATOM 201 O CYS 18 -1.857 7.584 3.802 1.00 0.88 O ATOM 202 N GLU 19 -2.833 7.803 1.764 1.00 1.40 N ATOM 204 CA GLU 19 -3.893 6.807 1.968 1.00 1.40 C ATOM 205 CB GLU 19 -5.266 7.410 1.670 1.00 1.40 C ATOM 206 CG GLU 19 -5.667 8.461 2.666 1.00 1.40 C ATOM 207 CD GLU 19 -7.030 9.062 2.373 1.00 1.40 C ATOM 208 OE1 GLU 19 -7.092 10.071 1.637 1.00 1.40 O ATOM 209 OE2 GLU 19 -8.040 8.530 2.882 1.00 1.40 O ATOM 210 C GLU 19 -3.640 5.564 1.106 1.00 1.40 C ATOM 211 O GLU 19 -3.643 5.640 -0.132 1.00 1.40 O ATOM 212 N VAL 20 -3.373 4.440 1.783 1.00 1.56 N ATOM 214 CA VAL 20 -3.082 3.149 1.140 1.00 1.56 C ATOM 215 CB VAL 20 -1.789 2.467 1.748 1.00 1.56 C ATOM 216 CG1 VAL 20 -1.038 1.694 0.672 1.00 1.56 C ATOM 217 CG2 VAL 20 -0.859 3.502 2.386 1.00 1.56 C ATOM 218 C VAL 20 -4.289 2.188 1.228 1.00 1.56 C ATOM 219 O VAL 20 -4.692 1.768 2.325 1.00 1.56 O ATOM 220 N ARG 21 -4.898 1.924 0.064 1.00 1.60 N ATOM 222 CA ARG 21 -6.042 1.010 -0.080 1.00 1.60 C ATOM 223 CB ARG 21 -7.160 1.620 -0.965 1.00 1.60 C ATOM 224 CG ARG 21 -6.722 2.354 -2.252 1.00 1.60 C ATOM 225 CD ARG 21 -7.912 2.908 -3.035 1.00 1.60 C ATOM 226 NE ARG 21 -8.735 1.856 -3.641 1.00 1.60 N ATOM 228 CZ ARG 21 -9.829 2.063 -4.374 1.00 1.60 C ATOM 229 NH1 ARG 21 -10.271 3.292 -4.619 1.00 1.60 N ATOM 232 NH2 ARG 21 -10.490 1.025 -4.870 1.00 1.60 N ATOM 235 C ARG 21 -5.598 -0.381 -0.576 1.00 1.60 C ATOM 236 O ARG 21 -5.117 -0.518 -1.710 1.00 1.60 O ATOM 237 N CYS 22 -5.711 -1.383 0.305 1.00 1.65 N ATOM 239 CA CYS 22 -5.332 -2.769 0.003 1.00 1.65 C ATOM 240 CB CYS 22 -4.327 -3.304 1.024 1.00 1.65 C ATOM 241 SG CYS 22 -2.634 -2.869 0.607 1.00 1.65 S ATOM 242 C CYS 22 -6.517 -3.726 -0.121 1.00 1.65 C ATOM 243 O CYS 22 -7.390 -3.770 0.756 1.00 1.65 O ATOM 244 N ASP 23 -6.579 -4.405 -1.272 1.00 1.98 N ATOM 246 CA ASP 23 -7.616 -5.397 -1.595 1.00 1.98 C ATOM 247 CB ASP 23 -8.545 -4.884 -2.729 1.00 1.98 C ATOM 248 CG ASP 23 -7.787 -4.416 -3.972 1.00 1.98 C ATOM 249 OD1 ASP 23 -7.550 -5.245 -4.878 1.00 1.98 O ATOM 250 OD2 ASP 23 -7.443 -3.216 -4.048 1.00 1.98 O ATOM 251 C ASP 23 -6.997 -6.780 -1.907 1.00 1.98 C ATOM 252 O ASP 23 -6.326 -6.948 -2.933 1.00 1.98 O ATOM 253 N GLU 24 -7.208 -7.741 -0.998 1.00 2.86 N ATOM 255 CA GLU 24 -6.703 -9.137 -1.077 1.00 2.86 C ATOM 256 CB GLU 24 -7.141 -9.920 0.164 1.00 2.86 C ATOM 257 CG GLU 24 -6.550 -9.419 1.477 1.00 2.86 C ATOM 258 CD GLU 24 -7.103 -10.154 2.684 1.00 2.86 C ATOM 259 OE1 GLU 24 -8.072 -9.654 3.292 1.00 2.86 O ATOM 260 OE2 GLU 24 -6.570 -11.232 3.027 1.00 2.86 O ATOM 261 C GLU 24 -7.064 -9.941 -2.351 1.00 2.86 C ATOM 262 O GLU 24 -6.311 -10.831 -2.760 1.00 2.86 O ATOM 263 N SER 25 -8.165 -9.530 -2.992 1.00 2.45 N ATOM 265 CA SER 25 -8.781 -10.064 -4.238 1.00 2.45 C ATOM 266 CB SER 25 -10.139 -9.389 -4.500 1.00 2.45 C ATOM 267 OG SER 25 -10.785 -9.929 -5.638 1.00 2.45 O ATOM 269 C SER 25 -7.845 -10.006 -5.473 1.00 2.45 C ATOM 270 O SER 25 -8.121 -9.261 -6.424 1.00 2.45 O ATOM 271 N ASN 26 -6.696 -10.708 -5.393 1.00 3.62 N ATOM 273 CA ASN 26 -5.552 -10.714 -6.359 1.00 3.62 C ATOM 274 CB ASN 26 -5.844 -11.290 -7.788 1.00 3.62 C ATOM 275 CG ASN 26 -6.901 -10.515 -8.577 1.00 3.62 C ATOM 276 OD1 ASN 26 -8.083 -10.859 -8.553 1.00 3.62 O ATOM 277 ND2 ASN 26 -6.470 -9.481 -9.292 1.00 3.62 N ATOM 280 C ASN 26 -5.005 -9.280 -6.299 1.00 3.62 C ATOM 281 O ASN 26 -5.138 -8.439 -7.196 1.00 3.62 O ATOM 282 N HIS 27 -4.307 -9.122 -5.174 1.00 2.75 N ATOM 284 CA HIS 27 -3.724 -7.905 -4.619 1.00 2.75 C ATOM 285 CG HIS 27 -2.344 -9.440 -3.106 1.00 2.75 C ATOM 286 CD2 HIS 27 -1.086 -9.563 -2.617 1.00 2.75 C ATOM 287 ND1 HIS 27 -2.701 -10.696 -3.555 1.00 2.75 N ATOM 289 CE1 HIS 27 -1.705 -11.538 -3.350 1.00 2.75 C ATOM 290 NE2 HIS 27 -0.714 -10.876 -2.781 1.00 2.75 N ATOM 292 C HIS 27 -2.663 -7.032 -5.299 1.00 2.75 C ATOM 293 O HIS 27 -1.533 -7.454 -5.581 1.00 2.75 O ATOM 294 CB HIS 27 -3.261 -8.247 -3.193 1.00 2.75 C ATOM 295 N CYS 28 -3.101 -5.790 -5.527 1.00 1.87 N ATOM 297 CA CYS 28 -2.338 -4.684 -6.103 1.00 1.87 C ATOM 298 CB CYS 28 -2.940 -4.263 -7.446 1.00 1.87 C ATOM 299 SG CYS 28 -4.670 -3.784 -7.321 1.00 1.87 S ATOM 300 C CYS 28 -2.556 -3.577 -5.061 1.00 1.87 C ATOM 301 O CYS 28 -3.687 -3.394 -4.586 1.00 1.87 O ATOM 302 N VAL 29 -1.488 -2.871 -4.683 1.00 2.68 N ATOM 304 CA VAL 29 -1.569 -1.795 -3.684 1.00 2.68 C ATOM 305 CB VAL 29 -0.526 -2.042 -2.505 1.00 2.68 C ATOM 306 CG1 VAL 29 0.894 -2.159 -3.025 1.00 2.68 C ATOM 307 CG2 VAL 29 -0.641 -1.000 -1.409 1.00 2.68 C ATOM 308 C VAL 29 -1.502 -0.391 -4.330 1.00 2.68 C ATOM 309 O VAL 29 -0.546 -0.073 -5.049 1.00 2.68 O ATOM 310 N GLU 30 -2.567 0.393 -4.112 1.00 1.90 N ATOM 312 CA GLU 30 -2.698 1.765 -4.619 1.00 1.90 C ATOM 313 CB GLU 30 -3.985 1.941 -5.429 1.00 1.90 C ATOM 314 CG GLU 30 -3.795 1.673 -6.900 1.00 1.90 C ATOM 315 CD GLU 30 -5.073 1.848 -7.701 1.00 1.90 C ATOM 316 OE1 GLU 30 -5.329 2.974 -8.178 1.00 1.90 O ATOM 317 OE2 GLU 30 -5.820 0.859 -7.856 1.00 1.90 O ATOM 318 C GLU 30 -2.644 2.783 -3.484 1.00 1.90 C ATOM 319 O GLU 30 -3.549 2.847 -2.641 1.00 1.90 O ATOM 320 N VAL 31 -1.547 3.545 -3.459 1.00 1.54 N ATOM 322 CA VAL 31 -1.293 4.585 -2.458 1.00 1.54 C ATOM 323 CB VAL 31 0.154 4.404 -1.812 1.00 1.54 C ATOM 324 CG1 VAL 31 1.279 4.588 -2.842 1.00 1.54 C ATOM 325 CG2 VAL 31 0.346 5.300 -0.583 1.00 1.54 C ATOM 326 C VAL 31 -1.522 5.973 -3.108 1.00 1.54 C ATOM 327 O VAL 31 -1.171 6.175 -4.279 1.00 1.54 O ATOM 328 N ARG 32 -2.155 6.881 -2.354 1.00 1.13 N ATOM 330 CA ARG 32 -2.445 8.249 -2.805 1.00 1.13 C ATOM 331 CB ARG 32 -3.884 8.650 -2.441 1.00 1.13 C ATOM 332 CG ARG 32 -4.947 8.067 -3.350 1.00 1.13 C ATOM 333 CD ARG 32 -6.357 8.496 -2.944 1.00 1.13 C ATOM 334 NE ARG 32 -6.615 9.917 -3.195 1.00 1.13 N ATOM 336 CZ ARG 32 -7.759 10.549 -2.933 1.00 1.13 C ATOM 337 NH1 ARG 32 -8.796 9.904 -2.403 1.00 1.13 N ATOM 340 NH2 ARG 32 -7.871 11.841 -3.205 1.00 1.13 N ATOM 343 C ARG 32 -1.434 9.244 -2.213 1.00 1.13 C ATOM 344 O ARG 32 -1.512 9.601 -1.033 1.00 1.13 O ATOM 345 N CYS 33 -0.528 9.714 -3.078 1.00 1.35 N ATOM 347 CA CYS 33 0.544 10.672 -2.755 1.00 1.35 C ATOM 348 CB CYS 33 1.915 10.124 -3.185 1.00 1.35 C ATOM 349 SG CYS 33 2.983 9.599 -1.836 1.00 1.35 S ATOM 350 C CYS 33 0.174 11.983 -3.475 1.00 1.35 C ATOM 351 O CYS 33 0.448 12.164 -4.668 1.00 1.35 O ATOM 352 N SER 34 -0.499 12.860 -2.718 1.00 2.62 N ATOM 354 CA SER 34 -1.054 14.154 -3.161 1.00 2.62 C ATOM 355 CB SER 34 -1.783 14.814 -1.975 1.00 2.62 C ATOM 356 OG SER 34 -0.869 15.229 -0.977 1.00 2.62 O ATOM 358 C SER 34 -0.180 15.210 -3.880 1.00 2.62 C ATOM 359 O SER 34 -0.688 16.290 -4.201 1.00 2.62 O ATOM 360 N ASP 35 1.100 14.912 -4.150 1.00 3.65 N ATOM 362 CA ASP 35 1.977 15.874 -4.847 1.00 3.65 C ATOM 363 CB ASP 35 3.256 16.149 -4.041 1.00 3.65 C ATOM 364 CG ASP 35 3.016 17.073 -2.859 1.00 3.65 C ATOM 365 OD1 ASP 35 3.144 18.306 -3.025 1.00 3.65 O ATOM 366 OD2 ASP 35 2.716 16.568 -1.754 1.00 3.65 O ATOM 367 C ASP 35 2.341 15.611 -6.316 1.00 3.65 C ATOM 368 O ASP 35 2.290 16.547 -7.119 1.00 3.65 O ATOM 369 N THR 36 2.679 14.362 -6.673 1.00 4.65 N ATOM 371 CA THR 36 3.055 14.017 -8.061 1.00 4.65 C ATOM 372 CB THR 36 4.538 13.508 -8.175 1.00 4.65 C ATOM 373 OG1 THR 36 4.854 12.672 -7.054 1.00 4.65 O ATOM 375 CG2 THR 36 5.505 14.686 -8.241 1.00 4.65 C ATOM 376 C THR 36 2.089 13.127 -8.877 1.00 4.65 C ATOM 377 O THR 36 2.300 11.913 -9.028 1.00 4.65 O ATOM 378 N LYS 37 1.018 13.760 -9.376 1.00 7.26 N ATOM 380 CA LYS 37 -0.012 13.145 -10.240 1.00 7.26 C ATOM 381 CB LYS 37 -1.440 13.534 -9.798 1.00 7.26 C ATOM 382 CG LYS 37 -2.584 12.712 -10.439 1.00 7.26 C ATOM 383 CD LYS 37 -3.947 13.175 -9.937 1.00 7.26 C ATOM 384 CE LYS 37 -5.092 12.377 -10.557 1.00 7.26 C ATOM 385 NZ LYS 37 -5.144 10.954 -10.105 1.00 7.26 N ATOM 389 C LYS 37 0.309 13.695 -11.651 1.00 7.26 C ATOM 390 O LYS 37 1.096 14.642 -11.776 1.00 7.26 O ATOM 391 N TYR 38 -0.297 13.106 -12.686 1.00 12.94 N ATOM 393 CA TYR 38 -0.060 13.491 -14.088 1.00 12.94 C ATOM 394 CB TYR 38 -0.222 12.245 -15.003 1.00 12.94 C ATOM 395 CG TYR 38 -1.391 11.293 -14.690 1.00 12.94 C ATOM 396 CD1 TYR 38 -1.225 10.193 -13.813 1.00 12.94 C ATOM 397 CE1 TYR 38 -2.292 9.291 -13.548 1.00 12.94 C ATOM 398 CD2 TYR 38 -2.660 11.468 -15.296 1.00 12.94 C ATOM 399 CE2 TYR 38 -3.734 10.572 -15.036 1.00 12.94 C ATOM 400 CZ TYR 38 -3.539 9.490 -14.162 1.00 12.94 C ATOM 401 OH TYR 38 -4.577 8.622 -13.911 1.00 12.94 O ATOM 403 C TYR 38 -0.860 14.702 -14.643 1.00 12.94 C ATOM 404 O TYR 38 -2.094 14.654 -14.748 1.00 12.94 O ATOM 405 N THR 39 -0.124 15.797 -14.912 1.00 18.89 N ATOM 407 CA THR 39 -0.628 17.077 -15.467 1.00 18.89 C ATOM 408 CB THR 39 -0.381 18.293 -14.485 1.00 18.89 C ATOM 409 OG1 THR 39 -0.631 17.871 -13.138 1.00 18.89 O ATOM 411 CG2 THR 39 -1.316 19.485 -14.804 1.00 18.89 C ATOM 412 C THR 39 0.115 17.322 -16.816 1.00 18.89 C ATOM 413 O THR 39 1.080 16.614 -17.129 1.00 18.89 O ATOM 414 N LEU 40 -0.355 18.310 -17.593 1.00 25.14 N ATOM 416 CA LEU 40 0.188 18.708 -18.916 1.00 25.14 C ATOM 417 CB LEU 40 -0.866 19.561 -19.668 1.00 25.14 C ATOM 418 CG LEU 40 -1.673 20.722 -19.032 1.00 25.14 C ATOM 419 CD1 LEU 40 -1.910 21.794 -20.084 1.00 25.14 C ATOM 420 CD2 LEU 40 -3.009 20.253 -18.432 1.00 25.14 C ATOM 421 C LEU 40 1.581 19.401 -18.967 1.00 25.14 C ATOM 422 O LEU 40 1.809 20.397 -18.266 1.00 25.14 O ATOM 423 N CYS 41 2.472 18.883 -19.830 1.00 28.79 N ATOM 425 CA CYS 41 3.842 19.404 -20.029 1.00 28.79 C ATOM 426 CB CYS 41 4.861 18.254 -20.088 1.00 28.79 C ATOM 427 SG CYS 41 4.488 16.952 -21.287 1.00 28.79 S ATOM 428 C CYS 41 3.968 20.280 -21.276 1.00 28.79 C ATOM 429 O CYS 41 4.730 21.268 -21.219 1.00 28.79 O ATOM 430 OXT CYS 41 3.295 19.977 -22.285 1.00 28.79 O TER END