####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS282_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS282_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 12 - 39 4.97 14.33 LCS_AVERAGE: 62.40 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 16 - 34 1.98 15.79 LCS_AVERAGE: 39.20 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.92 19.11 LCS_AVERAGE: 24.33 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 16 21 2 4 5 5 9 12 14 17 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT Q 2 Q 2 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT E 3 E 3 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT T 4 T 4 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT R 5 R 5 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT K 6 K 6 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT K 7 K 7 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT C 8 C 8 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 28 28 LCS_GDT T 9 T 9 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 29 30 LCS_GDT E 10 E 10 15 16 21 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 29 30 LCS_GDT M 11 M 11 15 16 27 6 11 15 15 15 15 16 18 20 21 22 24 24 25 25 26 27 28 29 30 LCS_GDT K 12 K 12 15 16 28 5 11 15 15 15 15 16 18 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT K 13 K 13 15 16 28 5 11 15 15 15 15 16 18 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT K 14 K 14 15 16 28 5 11 15 15 15 15 17 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT F 15 F 15 15 16 28 5 11 15 15 15 15 16 18 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT K 16 K 16 15 19 28 4 11 15 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT N 17 N 17 4 19 28 3 3 5 9 12 17 17 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT C 18 C 18 6 19 28 3 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT E 19 E 19 6 19 28 5 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT V 20 V 20 7 19 28 6 7 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT R 21 R 21 9 19 28 3 7 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT C 22 C 22 9 19 28 3 7 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT D 23 D 23 9 19 28 3 7 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT E 24 E 24 9 19 28 3 6 10 16 17 18 18 19 19 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT S 25 S 25 9 19 28 3 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT N 26 N 26 9 19 28 5 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT H 27 H 27 9 19 28 6 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT C 28 C 28 9 19 28 6 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT V 29 V 29 9 19 28 6 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT E 30 E 30 8 19 28 4 7 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT V 31 V 31 8 19 28 6 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT R 32 R 32 8 19 28 6 8 12 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT C 33 C 33 7 19 28 3 5 10 14 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT S 34 S 34 6 19 28 3 4 10 13 15 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT D 35 D 35 4 10 28 3 4 5 7 11 12 14 19 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT T 36 T 36 6 10 28 3 4 6 7 10 11 12 15 15 19 22 24 24 25 26 26 27 28 29 30 LCS_GDT K 37 K 37 6 10 28 3 4 6 6 8 11 12 15 20 21 22 24 24 25 26 26 27 28 29 30 LCS_GDT Y 38 Y 38 6 7 28 3 4 6 6 7 8 9 11 12 15 22 24 24 25 25 26 27 28 29 30 LCS_GDT T 39 T 39 6 7 28 3 4 6 6 7 8 9 11 12 12 13 16 17 20 20 21 24 28 28 30 LCS_GDT L 40 L 40 6 7 14 3 4 6 6 6 8 9 10 12 12 13 16 17 20 20 21 22 23 25 25 LCS_GDT C 41 C 41 6 7 14 3 3 6 6 6 8 9 10 12 12 13 16 16 17 17 18 21 22 23 23 LCS_AVERAGE LCS_A: 41.98 ( 24.33 39.20 62.40 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 11 15 16 17 18 18 19 20 21 22 24 24 25 26 26 27 28 29 30 GDT PERCENT_AT 14.63 26.83 36.59 39.02 41.46 43.90 43.90 46.34 48.78 51.22 53.66 58.54 58.54 60.98 63.41 63.41 65.85 68.29 70.73 73.17 GDT RMS_LOCAL 0.29 0.62 0.92 1.31 1.51 1.74 1.74 1.98 2.92 3.08 3.35 3.74 3.74 3.97 4.28 4.28 4.80 4.97 5.50 5.75 GDT RMS_ALL_AT 19.20 19.88 19.11 16.00 15.83 15.62 15.62 15.79 14.65 15.27 15.14 14.71 14.71 14.65 14.40 14.40 13.03 14.33 13.62 13.62 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 39.426 0 0.646 0.689 41.093 0.000 0.000 41.029 LGA Q 2 Q 2 37.611 0 0.644 1.191 40.967 0.000 0.000 39.367 LGA E 3 E 3 35.419 0 0.057 0.982 42.513 0.000 0.000 42.513 LGA T 4 T 4 31.048 0 0.045 0.058 33.206 0.000 0.000 29.886 LGA R 5 R 5 28.109 0 0.059 1.038 36.197 0.000 0.000 35.262 LGA K 6 K 6 27.403 0 0.057 1.347 32.612 0.000 0.000 32.612 LGA K 7 K 7 25.003 0 0.055 0.646 32.886 0.000 0.000 32.886 LGA C 8 C 8 20.853 0 0.056 0.705 22.852 0.000 0.000 20.586 LGA T 9 T 9 18.655 0 0.020 0.924 22.712 0.000 0.000 22.712 LGA E 10 E 10 17.000 0 0.022 0.975 21.105 0.000 0.000 20.622 LGA M 11 M 11 14.965 0 0.073 0.966 20.959 0.000 0.000 20.959 LGA K 12 K 12 10.734 0 0.037 0.629 16.656 0.000 0.000 16.656 LGA K 13 K 13 8.576 0 0.037 0.893 17.633 0.455 0.202 17.633 LGA K 14 K 14 6.619 0 0.061 0.124 13.730 0.000 0.000 13.730 LGA F 15 F 15 7.572 0 0.493 1.191 17.243 0.000 0.000 17.243 LGA K 16 K 16 2.123 0 0.412 1.179 6.302 49.091 24.646 6.302 LGA N 17 N 17 4.146 0 0.253 1.214 8.617 13.636 6.818 8.617 LGA C 18 C 18 1.260 0 0.524 0.954 3.173 53.636 55.758 0.880 LGA E 19 E 19 1.394 0 0.139 0.814 5.190 58.182 33.131 4.739 LGA V 20 V 20 0.775 0 0.145 0.989 2.780 67.727 59.221 1.715 LGA R 21 R 21 2.438 0 0.023 1.085 8.750 44.545 22.314 7.499 LGA C 22 C 22 2.146 0 0.023 0.156 2.753 44.545 40.606 2.753 LGA D 23 D 23 1.687 0 0.098 1.051 3.610 50.909 44.318 3.610 LGA E 24 E 24 2.743 0 0.028 0.957 5.744 32.727 20.404 5.744 LGA S 25 S 25 0.799 0 0.069 0.094 1.672 65.909 65.758 1.315 LGA N 26 N 26 1.790 0 0.684 1.338 4.332 40.000 32.727 4.280 LGA H 27 H 27 1.194 0 0.082 1.172 6.533 65.455 37.455 6.533 LGA C 28 C 28 0.749 0 0.056 0.761 2.308 81.818 74.545 2.308 LGA V 29 V 29 1.014 0 0.052 0.986 2.646 69.545 60.779 2.242 LGA E 30 E 30 1.585 0 0.053 0.797 4.497 61.818 39.798 4.497 LGA V 31 V 31 0.867 0 0.098 1.186 3.154 73.636 61.818 2.019 LGA R 32 R 32 0.652 0 0.244 1.044 7.860 82.273 40.165 5.965 LGA C 33 C 33 2.228 0 0.329 0.836 4.151 42.273 33.636 4.151 LGA S 34 S 34 3.466 0 0.516 0.575 5.175 9.545 11.212 3.283 LGA D 35 D 35 9.414 0 0.130 0.242 12.006 0.000 0.000 12.006 LGA T 36 T 36 10.925 0 0.204 0.901 11.831 0.000 0.000 10.904 LGA K 37 K 37 10.284 0 0.118 1.501 12.271 0.000 0.000 12.271 LGA Y 38 Y 38 12.380 0 0.095 0.100 17.516 0.000 0.000 17.516 LGA T 39 T 39 12.589 0 0.484 0.849 15.280 0.000 0.000 10.347 LGA L 40 L 40 14.581 0 0.139 1.096 16.030 0.000 0.000 16.030 LGA C 41 C 41 19.100 0 0.486 1.321 22.789 0.000 0.000 19.306 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 10.550 10.429 11.440 24.579 18.666 9.446 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 19 1.98 43.902 44.204 0.915 LGA_LOCAL RMSD: 1.977 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.786 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 10.550 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.280907 * X + -0.871744 * Y + -0.401439 * Z + 0.110176 Y_new = 0.954419 * X + 0.297702 * Y + 0.021381 * Z + 8.573735 Z_new = 0.100871 * X + -0.389148 * Y + 0.915636 * Z + -0.833173 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.284556 -0.101043 -0.401873 [DEG: 73.5996 -5.7893 -23.0256 ] ZXZ: -1.624007 0.413709 2.887965 [DEG: -93.0487 23.7038 165.4682 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS282_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS282_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 19 1.98 44.204 10.55 REMARK ---------------------------------------------------------- MOLECULE T0955TS282_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 CB SER 1 7.033 21.901 -12.084 1.00 0.00 C ATOM 2 OG SER 1 5.718 21.420 -11.851 1.00 0.00 O ATOM 4 C SER 1 7.339 23.046 -9.861 1.00 0.00 C ATOM 5 O SER 1 7.821 24.184 -9.920 1.00 0.00 O ATOM 8 N SER 1 7.840 20.608 -10.127 1.00 0.00 N ATOM 10 CA SER 1 7.860 21.942 -10.793 1.00 0.00 C ATOM 11 N GLN 2 6.365 22.692 -9.010 1.00 0.00 N ATOM 13 CA GLN 2 5.738 23.611 -8.038 1.00 0.00 C ATOM 14 CB GLN 2 4.206 23.542 -8.133 1.00 0.00 C ATOM 15 CG GLN 2 3.620 24.119 -9.417 1.00 0.00 C ATOM 16 CD GLN 2 2.105 24.034 -9.456 1.00 0.00 C ATOM 17 OE1 GLN 2 1.540 23.055 -9.943 1.00 0.00 O ATOM 18 NE2 GLN 2 1.440 25.063 -8.941 1.00 0.00 N ATOM 21 C GLN 2 6.182 23.304 -6.599 1.00 0.00 C ATOM 22 O GLN 2 6.461 22.144 -6.271 1.00 0.00 O ATOM 23 N GLU 3 6.245 24.351 -5.762 1.00 0.00 N ATOM 25 CA GLU 3 6.647 24.274 -4.338 1.00 0.00 C ATOM 26 CB GLU 3 6.988 25.677 -3.781 1.00 0.00 C ATOM 27 CG GLU 3 5.976 26.811 -4.062 1.00 0.00 C ATOM 28 CD GLU 3 6.409 28.139 -3.471 1.00 0.00 C ATOM 29 OE1 GLU 3 7.107 28.902 -4.170 1.00 0.00 O ATOM 30 OE2 GLU 3 6.051 28.419 -2.308 1.00 0.00 O ATOM 31 C GLU 3 5.665 23.533 -3.407 1.00 0.00 C ATOM 32 O GLU 3 6.094 22.796 -2.510 1.00 0.00 O ATOM 33 N THR 4 4.360 23.716 -3.660 1.00 0.00 N ATOM 35 CA THR 4 3.261 23.098 -2.888 1.00 0.00 C ATOM 36 CB THR 4 1.871 23.800 -3.187 1.00 0.00 C ATOM 37 OG1 THR 4 0.815 23.118 -2.494 1.00 0.00 O ATOM 39 CG2 THR 4 1.554 23.864 -4.698 1.00 0.00 C ATOM 40 C THR 4 3.183 21.560 -3.058 1.00 0.00 C ATOM 41 O THR 4 2.908 20.840 -2.087 1.00 0.00 O ATOM 42 N ARG 5 3.465 21.085 -4.282 1.00 0.00 N ATOM 44 CA ARG 5 3.453 19.652 -4.645 1.00 0.00 C ATOM 45 CB ARG 5 3.516 19.474 -6.169 1.00 0.00 C ATOM 46 CG ARG 5 2.261 19.914 -6.915 1.00 0.00 C ATOM 47 CD ARG 5 2.403 19.692 -8.413 1.00 0.00 C ATOM 48 NE ARG 5 1.204 20.102 -9.147 1.00 0.00 N ATOM 50 CZ ARG 5 1.038 19.998 -10.467 1.00 0.00 C ATOM 51 NH1 ARG 5 -0.098 20.404 -11.016 1.00 0.00 N ATOM 54 NH2 ARG 5 1.992 19.493 -11.243 1.00 0.00 N ATOM 57 C ARG 5 4.583 18.846 -3.972 1.00 0.00 C ATOM 58 O ARG 5 4.321 17.777 -3.406 1.00 0.00 O ATOM 59 N LYS 6 5.814 19.382 -4.013 1.00 0.00 N ATOM 61 CA LYS 6 7.003 18.750 -3.404 1.00 0.00 C ATOM 62 CB LYS 6 8.324 19.330 -3.958 1.00 0.00 C ATOM 63 CG LYS 6 8.460 20.873 -4.049 1.00 0.00 C ATOM 64 CD LYS 6 9.882 21.303 -4.451 1.00 0.00 C ATOM 65 CE LYS 6 9.977 21.864 -5.881 1.00 0.00 C ATOM 66 NZ LYS 6 9.305 23.184 -6.046 1.00 0.00 N ATOM 70 C LYS 6 6.993 18.735 -1.861 1.00 0.00 C ATOM 71 O LYS 6 7.388 17.736 -1.249 1.00 0.00 O ATOM 72 N LYS 7 6.516 19.836 -1.258 1.00 0.00 N ATOM 74 CA LYS 7 6.411 20.003 0.207 1.00 0.00 C ATOM 75 CB LYS 7 6.129 21.467 0.573 1.00 0.00 C ATOM 76 CG LYS 7 7.327 22.398 0.427 1.00 0.00 C ATOM 77 CD LYS 7 6.966 23.824 0.807 1.00 0.00 C ATOM 78 CE LYS 7 8.161 24.753 0.661 1.00 0.00 C ATOM 79 NZ LYS 7 7.823 26.155 1.030 1.00 0.00 N ATOM 83 C LYS 7 5.353 19.084 0.845 1.00 0.00 C ATOM 84 O LYS 7 5.616 18.480 1.892 1.00 0.00 O ATOM 85 N CYS 8 4.183 18.971 0.196 1.00 0.00 N ATOM 87 CA CYS 8 3.062 18.125 0.656 1.00 0.00 C ATOM 88 CB CYS 8 1.772 18.451 -0.108 1.00 0.00 C ATOM 89 SG CYS 8 1.807 18.120 -1.888 1.00 0.00 S ATOM 90 C CYS 8 3.368 16.620 0.556 1.00 0.00 C ATOM 91 O CYS 8 3.024 15.860 1.465 1.00 0.00 O ATOM 92 N THR 9 4.037 16.219 -0.536 1.00 0.00 N ATOM 94 CA THR 9 4.428 14.818 -0.803 1.00 0.00 C ATOM 95 CB THR 9 4.906 14.617 -2.271 1.00 0.00 C ATOM 96 OG1 THR 9 5.854 15.636 -2.614 1.00 0.00 O ATOM 98 CG2 THR 9 3.726 14.667 -3.234 1.00 0.00 C ATOM 99 C THR 9 5.503 14.298 0.174 1.00 0.00 C ATOM 100 O THR 9 5.387 13.173 0.673 1.00 0.00 O ATOM 101 N GLU 10 6.503 15.145 0.473 1.00 0.00 N ATOM 103 CA GLU 10 7.617 14.833 1.397 1.00 0.00 C ATOM 104 CB GLU 10 8.744 15.866 1.264 1.00 0.00 C ATOM 105 CG GLU 10 9.578 15.734 -0.008 1.00 0.00 C ATOM 106 CD GLU 10 10.679 16.775 -0.098 1.00 0.00 C ATOM 107 OE1 GLU 10 11.798 16.502 0.386 1.00 0.00 O ATOM 108 OE2 GLU 10 10.427 17.864 -0.654 1.00 0.00 O ATOM 109 C GLU 10 7.181 14.712 2.870 1.00 0.00 C ATOM 110 O GLU 10 7.581 13.764 3.558 1.00 0.00 O ATOM 111 N MET 11 6.341 15.656 3.321 1.00 0.00 N ATOM 113 CA MET 11 5.804 15.712 4.698 1.00 0.00 C ATOM 114 CG MET 11 6.056 18.267 5.084 1.00 0.00 C ATOM 115 SD MET 11 7.021 18.337 6.620 1.00 0.00 S ATOM 116 CE MET 11 6.052 19.502 7.587 1.00 0.00 C ATOM 117 C MET 11 4.829 14.566 5.010 1.00 0.00 C ATOM 118 O MET 11 4.896 13.975 6.094 1.00 0.00 O ATOM 119 CB MET 11 5.115 17.061 4.957 1.00 0.00 C ATOM 120 N LYS 12 3.942 14.262 4.049 1.00 0.00 N ATOM 122 CA LYS 12 2.935 13.189 4.159 1.00 0.00 C ATOM 123 CB LYS 12 1.862 13.330 3.074 1.00 0.00 C ATOM 124 CG LYS 12 0.848 14.439 3.330 1.00 0.00 C ATOM 125 CD LYS 12 -0.180 14.517 2.213 1.00 0.00 C ATOM 126 CE LYS 12 -1.191 15.623 2.469 1.00 0.00 C ATOM 127 NZ LYS 12 -2.206 15.710 1.383 1.00 0.00 N ATOM 131 C LYS 12 3.526 11.768 4.152 1.00 0.00 C ATOM 132 O LYS 12 3.037 10.902 4.888 1.00 0.00 O ATOM 133 N LYS 13 4.568 11.541 3.335 1.00 0.00 N ATOM 135 CA LYS 13 5.251 10.232 3.237 1.00 0.00 C ATOM 136 CB LYS 13 6.121 10.121 1.962 1.00 0.00 C ATOM 137 CG LYS 13 7.363 11.022 1.855 1.00 0.00 C ATOM 138 CD LYS 13 8.152 10.713 0.591 1.00 0.00 C ATOM 139 CE LYS 13 9.440 11.517 0.525 1.00 0.00 C ATOM 140 NZ LYS 13 10.218 11.219 -0.709 1.00 0.00 N ATOM 144 C LYS 13 6.046 9.867 4.508 1.00 0.00 C ATOM 145 O LYS 13 6.016 8.714 4.950 1.00 0.00 O ATOM 146 N LYS 14 6.762 10.858 5.058 1.00 0.00 N ATOM 148 CA LYS 14 7.571 10.712 6.284 1.00 0.00 C ATOM 149 CB LYS 14 8.528 11.904 6.450 1.00 0.00 C ATOM 150 CG LYS 14 9.653 11.969 5.423 1.00 0.00 C ATOM 151 CD LYS 14 10.551 13.177 5.662 1.00 0.00 C ATOM 152 CE LYS 14 11.687 13.262 4.643 1.00 0.00 C ATOM 153 NZ LYS 14 11.226 13.580 3.258 1.00 0.00 N ATOM 157 C LYS 14 6.726 10.532 7.562 1.00 0.00 C ATOM 158 O LYS 14 7.015 9.644 8.370 1.00 0.00 O ATOM 159 N PHE 15 5.694 11.378 7.723 1.00 0.00 N ATOM 161 CA PHE 15 4.775 11.363 8.880 1.00 0.00 C ATOM 162 CB PHE 15 4.011 12.716 8.962 1.00 0.00 C ATOM 163 CG PHE 15 3.608 13.149 10.377 1.00 0.00 C ATOM 164 CD1 PHE 15 2.352 12.781 10.916 1.00 0.00 C ATOM 165 CD2 PHE 15 4.465 13.959 11.159 1.00 0.00 C ATOM 166 CE1 PHE 15 1.954 13.210 12.213 1.00 0.00 C ATOM 167 CE2 PHE 15 4.082 14.396 12.456 1.00 0.00 C ATOM 168 CZ PHE 15 2.823 14.020 12.984 1.00 0.00 C ATOM 169 C PHE 15 3.781 10.175 8.940 1.00 0.00 C ATOM 170 O PHE 15 3.676 9.521 9.985 1.00 0.00 O ATOM 171 N LYS 16 3.082 9.902 7.823 1.00 0.00 N ATOM 173 CA LYS 16 2.079 8.815 7.694 1.00 0.00 C ATOM 174 CB LYS 16 0.687 9.263 8.206 1.00 0.00 C ATOM 175 CG LYS 16 0.482 9.163 9.713 1.00 0.00 C ATOM 176 CD LYS 16 -0.910 9.625 10.114 1.00 0.00 C ATOM 177 CE LYS 16 -1.114 9.525 11.616 1.00 0.00 C ATOM 178 NZ LYS 16 -2.474 9.974 12.023 1.00 0.00 N ATOM 182 C LYS 16 1.956 8.274 6.250 1.00 0.00 C ATOM 183 O LYS 16 0.897 8.403 5.618 1.00 0.00 O ATOM 184 N ASN 17 3.044 7.661 5.752 1.00 0.00 N ATOM 186 CA ASN 17 3.192 7.041 4.399 1.00 0.00 C ATOM 187 CB ASN 17 3.131 5.489 4.497 1.00 0.00 C ATOM 188 CG ASN 17 1.855 4.970 5.172 1.00 0.00 C ATOM 189 OD1 ASN 17 1.812 4.792 6.390 1.00 0.00 O ATOM 190 ND2 ASN 17 0.823 4.716 4.373 1.00 0.00 N ATOM 193 C ASN 17 2.388 7.570 3.168 1.00 0.00 C ATOM 194 O ASN 17 2.254 6.865 2.157 1.00 0.00 O ATOM 195 N CYS 18 1.921 8.829 3.255 1.00 0.00 N ATOM 197 CA CYS 18 1.124 9.559 2.226 1.00 0.00 C ATOM 198 CB CYS 18 2.035 10.180 1.142 1.00 0.00 C ATOM 199 SG CYS 18 3.001 8.987 0.186 1.00 0.00 S ATOM 200 C CYS 18 -0.067 8.792 1.594 1.00 0.00 C ATOM 201 O CYS 18 -0.269 8.819 0.370 1.00 0.00 O ATOM 202 N GLU 19 -0.856 8.132 2.460 1.00 0.00 N ATOM 204 CA GLU 19 -2.059 7.315 2.133 1.00 0.00 C ATOM 205 CB GLU 19 -3.282 8.204 1.808 1.00 0.00 C ATOM 206 CG GLU 19 -3.750 9.096 2.958 1.00 0.00 C ATOM 207 CD GLU 19 -4.893 10.012 2.563 1.00 0.00 C ATOM 208 OE1 GLU 19 -6.063 9.603 2.708 1.00 0.00 O ATOM 209 OE2 GLU 19 -4.621 11.145 2.114 1.00 0.00 O ATOM 210 C GLU 19 -1.860 6.228 1.052 1.00 0.00 C ATOM 211 O GLU 19 -1.537 6.541 -0.101 1.00 0.00 O ATOM 212 N VAL 20 -2.080 4.964 1.443 1.00 0.00 N ATOM 214 CA VAL 20 -1.917 3.778 0.574 1.00 0.00 C ATOM 215 CB VAL 20 -0.966 2.692 1.237 1.00 0.00 C ATOM 216 CG1 VAL 20 0.475 3.164 1.214 1.00 0.00 C ATOM 217 CG2 VAL 20 -1.365 2.387 2.694 1.00 0.00 C ATOM 218 C VAL 20 -3.244 3.117 0.127 1.00 0.00 C ATOM 219 O VAL 20 -4.233 3.175 0.854 1.00 0.00 O ATOM 220 N ARG 21 -3.249 2.510 -1.068 1.00 0.00 N ATOM 222 CA ARG 21 -4.414 1.807 -1.643 1.00 0.00 C ATOM 223 CB ARG 21 -4.716 2.300 -3.069 1.00 0.00 C ATOM 224 CG ARG 21 -5.220 3.739 -3.161 1.00 0.00 C ATOM 225 CD ARG 21 -5.504 4.163 -4.600 1.00 0.00 C ATOM 226 NE ARG 21 -4.285 4.315 -5.401 1.00 0.00 N ATOM 228 CZ ARG 21 -4.249 4.677 -6.683 1.00 0.00 C ATOM 229 NH1 ARG 21 -3.079 4.780 -7.300 1.00 0.00 N ATOM 232 NH2 ARG 21 -5.364 4.935 -7.358 1.00 0.00 N ATOM 235 C ARG 21 -4.137 0.292 -1.664 1.00 0.00 C ATOM 236 O ARG 21 -3.138 -0.151 -2.251 1.00 0.00 O ATOM 237 N CYS 22 -4.992 -0.478 -0.979 1.00 0.00 N ATOM 239 CA CYS 22 -4.880 -1.945 -0.895 1.00 0.00 C ATOM 240 CB CYS 22 -4.548 -2.391 0.535 1.00 0.00 C ATOM 241 SG CYS 22 -2.957 -1.792 1.154 1.00 0.00 S ATOM 242 C CYS 22 -6.164 -2.632 -1.372 1.00 0.00 C ATOM 243 O CYS 22 -7.268 -2.113 -1.161 1.00 0.00 O ATOM 244 N ASP 23 -5.996 -3.793 -2.020 1.00 0.00 N ATOM 246 CA ASP 23 -7.092 -4.616 -2.566 1.00 0.00 C ATOM 247 CB ASP 23 -6.932 -4.818 -4.091 1.00 0.00 C ATOM 248 CG ASP 23 -5.530 -4.484 -4.601 1.00 0.00 C ATOM 249 OD1 ASP 23 -4.624 -5.340 -4.500 1.00 0.00 O ATOM 250 OD2 ASP 23 -5.339 -3.359 -5.110 1.00 0.00 O ATOM 251 C ASP 23 -7.184 -5.976 -1.856 1.00 0.00 C ATOM 252 O ASP 23 -6.179 -6.464 -1.324 1.00 0.00 O ATOM 253 N GLU 24 -8.387 -6.569 -1.858 1.00 0.00 N ATOM 255 CA GLU 24 -8.676 -7.872 -1.226 1.00 0.00 C ATOM 256 CB GLU 24 -10.043 -7.835 -0.523 1.00 0.00 C ATOM 257 CG GLU 24 -10.101 -6.946 0.717 1.00 0.00 C ATOM 258 CD GLU 24 -11.469 -6.945 1.374 1.00 0.00 C ATOM 259 OE1 GLU 24 -11.708 -7.794 2.257 1.00 0.00 O ATOM 260 OE2 GLU 24 -12.304 -6.091 1.008 1.00 0.00 O ATOM 261 C GLU 24 -8.636 -9.040 -2.229 1.00 0.00 C ATOM 262 O GLU 24 -8.397 -10.191 -1.835 1.00 0.00 O ATOM 263 N SER 25 -8.844 -8.724 -3.515 1.00 0.00 N ATOM 265 CA SER 25 -8.845 -9.701 -4.621 1.00 0.00 C ATOM 266 CB SER 25 -9.929 -9.341 -5.643 1.00 0.00 C ATOM 267 OG SER 25 -11.216 -9.342 -5.048 1.00 0.00 O ATOM 269 C SER 25 -7.478 -9.786 -5.320 1.00 0.00 C ATOM 270 O SER 25 -7.092 -10.858 -5.803 1.00 0.00 O ATOM 271 N ASN 26 -6.760 -8.654 -5.352 1.00 0.00 N ATOM 273 CA ASN 26 -5.426 -8.530 -5.970 1.00 0.00 C ATOM 274 CB ASN 26 -5.388 -7.329 -6.934 1.00 0.00 C ATOM 275 CG ASN 26 -6.303 -7.508 -8.141 1.00 0.00 C ATOM 276 OD1 ASN 26 -5.887 -8.025 -9.181 1.00 0.00 O ATOM 277 ND2 ASN 26 -7.550 -7.063 -8.014 1.00 0.00 N ATOM 280 C ASN 26 -4.339 -8.377 -4.891 1.00 0.00 C ATOM 281 O ASN 26 -4.656 -8.050 -3.740 1.00 0.00 O ATOM 282 N HIS 27 -3.074 -8.613 -5.273 1.00 0.00 N ATOM 284 CA HIS 27 -1.905 -8.521 -4.378 1.00 0.00 C ATOM 285 CG HIS 27 -0.171 -10.119 -3.362 1.00 0.00 C ATOM 286 CD2 HIS 27 1.173 -10.104 -3.188 1.00 0.00 C ATOM 287 ND1 HIS 27 -0.703 -10.556 -2.166 1.00 0.00 N ATOM 289 CE1 HIS 27 0.273 -10.794 -1.309 1.00 0.00 C ATOM 290 NE2 HIS 27 1.422 -10.527 -1.905 1.00 0.00 N ATOM 292 C HIS 27 -1.106 -7.220 -4.658 1.00 0.00 C ATOM 293 O HIS 27 0.050 -7.086 -4.229 1.00 0.00 O ATOM 294 CB HIS 27 -1.020 -9.780 -4.556 1.00 0.00 C ATOM 295 N CYS 28 -1.759 -6.258 -5.327 1.00 0.00 N ATOM 297 CA CYS 28 -1.164 -4.958 -5.692 1.00 0.00 C ATOM 298 CB CYS 28 -1.665 -4.509 -7.069 1.00 0.00 C ATOM 299 SG CYS 28 -3.463 -4.415 -7.238 1.00 0.00 S ATOM 300 C CYS 28 -1.386 -3.829 -4.673 1.00 0.00 C ATOM 301 O CYS 28 -2.499 -3.662 -4.155 1.00 0.00 O ATOM 302 N VAL 29 -0.307 -3.089 -4.377 1.00 0.00 N ATOM 304 CA VAL 29 -0.312 -1.947 -3.441 1.00 0.00 C ATOM 305 CB VAL 29 0.603 -2.183 -2.168 1.00 0.00 C ATOM 306 CG1 VAL 29 -0.089 -3.135 -1.204 1.00 0.00 C ATOM 307 CG2 VAL 29 1.990 -2.749 -2.551 1.00 0.00 C ATOM 308 C VAL 29 0.039 -0.623 -4.158 1.00 0.00 C ATOM 309 O VAL 29 1.070 -0.529 -4.840 1.00 0.00 O ATOM 310 N GLU 30 -0.862 0.360 -4.031 1.00 0.00 N ATOM 312 CA GLU 30 -0.742 1.704 -4.630 1.00 0.00 C ATOM 313 CB GLU 30 -1.931 1.990 -5.558 1.00 0.00 C ATOM 314 CG GLU 30 -1.961 1.147 -6.833 1.00 0.00 C ATOM 315 CD GLU 30 -3.162 1.449 -7.709 1.00 0.00 C ATOM 316 OE1 GLU 30 -4.210 0.793 -7.531 1.00 0.00 O ATOM 317 OE2 GLU 30 -3.057 2.339 -8.580 1.00 0.00 O ATOM 318 C GLU 30 -0.730 2.747 -3.511 1.00 0.00 C ATOM 319 O GLU 30 -1.242 2.472 -2.429 1.00 0.00 O ATOM 320 N VAL 31 -0.061 3.889 -3.731 1.00 0.00 N ATOM 322 CA VAL 31 -0.009 4.983 -2.740 1.00 0.00 C ATOM 323 CB VAL 31 1.366 4.975 -1.901 1.00 0.00 C ATOM 324 CG1 VAL 31 2.602 5.066 -2.821 1.00 0.00 C ATOM 325 CG2 VAL 31 1.398 6.064 -0.817 1.00 0.00 C ATOM 326 C VAL 31 -0.323 6.347 -3.406 1.00 0.00 C ATOM 327 O VAL 31 0.382 6.778 -4.329 1.00 0.00 O ATOM 328 N ARG 32 -1.426 6.962 -2.959 1.00 0.00 N ATOM 330 CA ARG 32 -1.905 8.281 -3.412 1.00 0.00 C ATOM 331 CB ARG 32 -3.043 8.142 -4.445 1.00 0.00 C ATOM 332 CG ARG 32 -3.096 9.271 -5.493 1.00 0.00 C ATOM 333 CD ARG 32 -4.148 9.031 -6.573 1.00 0.00 C ATOM 334 NE ARG 32 -3.783 7.947 -7.490 1.00 0.00 N ATOM 336 CZ ARG 32 -4.423 7.653 -8.623 1.00 0.00 C ATOM 337 NH1 ARG 32 -3.996 6.646 -9.372 1.00 0.00 N ATOM 340 NH2 ARG 32 -5.484 8.351 -9.017 1.00 0.00 N ATOM 343 C ARG 32 -2.399 8.983 -2.135 1.00 0.00 C ATOM 344 O ARG 32 -3.078 8.352 -1.316 1.00 0.00 O ATOM 345 N CYS 33 -2.071 10.272 -1.983 1.00 0.00 N ATOM 347 CA CYS 33 -2.455 11.076 -0.807 1.00 0.00 C ATOM 348 CB CYS 33 -1.247 11.883 -0.310 1.00 0.00 C ATOM 349 SG CYS 33 -0.499 12.968 -1.550 1.00 0.00 S ATOM 350 C CYS 33 -3.666 11.995 -1.065 1.00 0.00 C ATOM 351 O CYS 33 -4.206 12.597 -0.125 1.00 0.00 O ATOM 352 N SER 34 -4.103 12.057 -2.331 1.00 0.00 N ATOM 354 CA SER 34 -5.249 12.876 -2.770 1.00 0.00 C ATOM 355 CB SER 34 -4.859 13.737 -3.978 1.00 0.00 C ATOM 356 OG SER 34 -3.788 14.611 -3.661 1.00 0.00 O ATOM 358 C SER 34 -6.467 12.008 -3.122 1.00 0.00 C ATOM 359 O SER 34 -6.301 10.877 -3.589 1.00 0.00 O ATOM 360 N ASP 35 -7.673 12.564 -2.895 1.00 0.00 N ATOM 362 CA ASP 35 -9.019 11.970 -3.142 1.00 0.00 C ATOM 363 CB ASP 35 -9.646 12.512 -4.458 1.00 0.00 C ATOM 364 CG ASP 35 -8.754 12.312 -5.689 1.00 0.00 C ATOM 365 OD1 ASP 35 -8.879 11.260 -6.354 1.00 0.00 O ATOM 366 OD2 ASP 35 -7.942 13.213 -5.994 1.00 0.00 O ATOM 367 C ASP 35 -9.297 10.451 -2.998 1.00 0.00 C ATOM 368 O ASP 35 -10.241 10.064 -2.298 1.00 0.00 O ATOM 369 N THR 36 -8.477 9.619 -3.657 1.00 0.00 N ATOM 371 CA THR 36 -8.581 8.140 -3.665 1.00 0.00 C ATOM 372 CB THR 36 -7.550 7.518 -4.656 1.00 0.00 C ATOM 373 OG1 THR 36 -6.241 8.018 -4.365 1.00 0.00 O ATOM 375 CG2 THR 36 -7.916 7.846 -6.101 1.00 0.00 C ATOM 376 C THR 36 -8.466 7.434 -2.287 1.00 0.00 C ATOM 377 O THR 36 -8.239 8.097 -1.268 1.00 0.00 O ATOM 378 N LYS 37 -8.619 6.099 -2.286 1.00 0.00 N ATOM 380 CA LYS 37 -8.569 5.217 -1.096 1.00 0.00 C ATOM 381 CB LYS 37 -8.794 3.757 -1.515 1.00 0.00 C ATOM 382 CG LYS 37 -10.208 3.439 -1.991 1.00 0.00 C ATOM 383 CD LYS 37 -10.342 1.977 -2.385 1.00 0.00 C ATOM 384 CE LYS 37 -11.752 1.660 -2.859 1.00 0.00 C ATOM 385 NZ LYS 37 -11.898 0.230 -3.249 1.00 0.00 N ATOM 389 C LYS 37 -7.301 5.284 -0.224 1.00 0.00 C ATOM 390 O LYS 37 -6.208 5.560 -0.734 1.00 0.00 O ATOM 391 N TYR 38 -7.475 5.060 1.087 1.00 0.00 N ATOM 393 CA TYR 38 -6.389 5.056 2.083 1.00 0.00 C ATOM 394 CB TYR 38 -6.359 6.372 2.909 1.00 0.00 C ATOM 395 CG TYR 38 -7.685 6.861 3.522 1.00 0.00 C ATOM 396 CD1 TYR 38 -8.056 6.500 4.840 1.00 0.00 C ATOM 397 CE1 TYR 38 -9.265 6.974 5.423 1.00 0.00 C ATOM 398 CD2 TYR 38 -8.557 7.714 2.799 1.00 0.00 C ATOM 399 CE2 TYR 38 -9.767 8.192 3.375 1.00 0.00 C ATOM 400 CZ TYR 38 -10.110 7.818 4.684 1.00 0.00 C ATOM 401 OH TYR 38 -11.280 8.279 5.241 1.00 0.00 O ATOM 403 C TYR 38 -6.476 3.819 2.998 1.00 0.00 C ATOM 404 O TYR 38 -7.545 3.525 3.547 1.00 0.00 O ATOM 405 N THR 39 -5.354 3.096 3.125 1.00 0.00 N ATOM 407 CA THR 39 -5.241 1.869 3.938 1.00 0.00 C ATOM 408 CB THR 39 -5.059 0.592 3.032 1.00 0.00 C ATOM 409 OG1 THR 39 -4.006 0.802 2.086 1.00 0.00 O ATOM 411 CG2 THR 39 -6.358 0.272 2.298 1.00 0.00 C ATOM 412 C THR 39 -4.099 1.970 4.972 1.00 0.00 C ATOM 413 O THR 39 -3.714 0.963 5.586 1.00 0.00 O ATOM 414 N LEU 40 -3.625 3.203 5.217 1.00 0.00 N ATOM 416 CA LEU 40 -2.527 3.509 6.166 1.00 0.00 C ATOM 417 CB LEU 40 -2.126 5.009 6.088 1.00 0.00 C ATOM 418 CG LEU 40 -3.029 6.275 6.123 1.00 0.00 C ATOM 419 CD1 LEU 40 -3.802 6.476 7.443 1.00 0.00 C ATOM 420 CD2 LEU 40 -2.134 7.478 5.894 1.00 0.00 C ATOM 421 C LEU 40 -2.765 3.089 7.636 1.00 0.00 C ATOM 422 O LEU 40 -3.900 3.155 8.122 1.00 0.00 O ATOM 423 N CYS 41 -1.687 2.666 8.313 1.00 0.00 N ATOM 425 CA CYS 41 -1.713 2.225 9.720 1.00 0.00 C ATOM 426 CB CYS 41 -1.004 0.871 9.869 1.00 0.00 C ATOM 427 SG CYS 41 0.695 0.828 9.241 1.00 0.00 S ATOM 428 C CYS 41 -1.085 3.258 10.660 1.00 0.00 C ATOM 429 O CYS 41 -0.135 3.946 10.230 1.00 0.00 O ATOM 430 OXT CYS 41 -1.560 3.372 11.810 1.00 0.00 O TER END