####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS282_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS282_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 1 - 22 4.73 10.88 LCS_AVERAGE: 52.29 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.62 10.83 LONGEST_CONTINUOUS_SEGMENT: 17 2 - 18 1.85 11.03 LCS_AVERAGE: 28.79 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.95 10.70 LCS_AVERAGE: 20.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 22 3 3 4 10 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT Q 2 Q 2 15 17 22 6 11 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT E 3 E 3 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT T 4 T 4 15 17 22 7 11 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT R 5 R 5 15 17 22 7 11 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT K 6 K 6 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT K 7 K 7 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT C 8 C 8 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT T 9 T 9 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT E 10 E 10 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT M 11 M 11 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT K 12 K 12 15 17 22 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT K 13 K 13 15 17 22 6 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT K 14 K 14 15 17 22 5 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT F 15 F 15 15 17 22 5 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT K 16 K 16 15 17 22 5 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT N 17 N 17 3 17 22 4 6 10 13 13 15 17 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT C 18 C 18 3 17 22 3 3 4 8 9 13 16 17 20 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT E 19 E 19 5 6 22 3 5 10 13 13 13 17 18 20 20 25 26 28 28 29 30 31 31 31 32 LCS_GDT V 20 V 20 5 6 22 3 5 10 13 13 13 16 17 18 20 23 25 28 28 29 30 31 31 31 32 LCS_GDT R 21 R 21 5 6 22 3 4 5 6 7 8 11 13 14 15 17 18 20 21 23 25 27 30 31 32 LCS_GDT C 22 C 22 5 6 22 3 4 5 5 7 8 11 12 14 15 16 17 18 19 20 23 25 27 29 29 LCS_GDT D 23 D 23 5 6 21 0 3 5 5 6 7 9 12 14 14 16 17 18 19 20 21 23 25 25 29 LCS_GDT E 24 E 24 3 4 21 1 3 3 3 4 7 8 11 14 14 16 16 18 19 20 21 23 27 27 29 LCS_GDT S 25 S 25 3 6 21 3 3 3 3 8 9 9 12 14 15 16 17 18 19 20 22 25 27 29 29 LCS_GDT N 26 N 26 3 6 21 3 3 4 8 8 9 11 12 14 15 16 18 20 21 22 22 25 27 29 29 LCS_GDT H 27 H 27 4 6 21 3 4 4 8 8 9 11 13 14 16 17 19 20 23 23 24 26 28 30 30 LCS_GDT C 28 C 28 4 10 21 3 4 4 8 8 12 15 16 16 16 19 20 22 23 26 26 27 28 31 32 LCS_GDT V 29 V 29 7 10 21 3 6 10 13 13 13 15 16 16 16 19 20 21 23 24 24 27 28 30 32 LCS_GDT E 30 E 30 7 10 21 4 6 10 13 13 13 15 16 16 16 19 20 22 26 28 29 30 31 31 32 LCS_GDT V 31 V 31 7 10 21 3 4 9 13 13 13 15 16 20 21 24 26 28 28 29 30 31 31 31 32 LCS_GDT R 32 R 32 7 10 21 7 11 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT C 33 C 33 7 10 21 3 6 10 13 13 16 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT S 34 S 34 7 10 21 4 6 10 13 13 13 15 16 16 18 20 27 27 28 29 30 31 31 31 31 LCS_GDT D 35 D 35 7 10 21 3 5 10 13 13 13 15 16 16 18 24 27 27 28 29 30 31 31 31 31 LCS_GDT T 36 T 36 6 10 21 3 8 10 13 13 14 18 22 23 24 26 27 27 28 29 30 31 31 31 31 LCS_GDT K 37 K 37 6 10 21 3 4 7 13 13 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT Y 38 Y 38 3 8 21 3 3 4 8 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT T 39 T 39 3 8 21 3 4 4 12 13 18 20 21 23 24 26 26 28 28 29 30 31 31 31 32 LCS_GDT L 40 L 40 3 5 21 3 4 4 5 16 19 20 21 23 24 26 27 28 28 29 30 31 31 31 32 LCS_GDT C 41 C 41 3 5 17 0 3 4 5 15 16 18 20 23 24 26 27 28 28 29 30 31 31 31 32 LCS_AVERAGE LCS_A: 33.95 ( 20.76 28.79 52.29 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 12 16 16 16 19 20 22 23 24 26 27 28 28 29 30 31 31 31 32 GDT PERCENT_AT 17.07 29.27 39.02 39.02 39.02 46.34 48.78 53.66 56.10 58.54 63.41 65.85 68.29 68.29 70.73 73.17 75.61 75.61 75.61 78.05 GDT RMS_LOCAL 0.28 0.68 0.96 0.96 0.96 1.61 1.76 2.30 2.32 2.47 2.86 3.24 3.39 3.33 3.57 3.82 4.05 4.05 4.05 5.43 GDT RMS_ALL_AT 10.74 10.47 10.75 10.75 10.75 10.86 10.78 11.25 10.92 10.79 11.00 11.50 10.67 10.87 10.79 11.16 11.07 11.07 11.07 10.04 # Checking swapping # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.420 0 0.646 0.689 4.304 15.455 17.879 2.617 LGA Q 2 Q 2 1.186 0 0.207 0.930 6.825 82.273 42.626 6.825 LGA E 3 E 3 0.451 0 0.056 1.214 5.470 100.000 65.455 2.407 LGA T 4 T 4 0.300 0 0.030 0.050 0.595 100.000 97.403 0.595 LGA R 5 R 5 0.400 0 0.039 1.223 4.553 100.000 62.314 4.553 LGA K 6 K 6 0.341 0 0.039 1.195 6.688 95.455 58.990 6.688 LGA K 7 K 7 0.427 0 0.064 0.695 3.237 90.909 69.091 3.237 LGA C 8 C 8 0.695 0 0.071 0.712 2.296 90.909 77.879 2.296 LGA T 9 T 9 0.213 0 0.024 0.919 2.778 95.455 80.000 1.661 LGA E 10 E 10 1.035 0 0.021 0.647 2.019 69.545 59.394 2.019 LGA M 11 M 11 1.343 0 0.044 1.043 3.685 65.455 51.591 3.685 LGA K 12 K 12 0.305 0 0.068 0.851 4.780 86.364 66.465 4.780 LGA K 13 K 13 1.801 0 0.041 0.839 2.748 51.364 55.556 1.133 LGA K 14 K 14 2.737 0 0.081 0.627 4.882 27.727 18.384 3.301 LGA F 15 F 15 2.742 0 0.501 0.735 5.258 20.909 30.083 2.208 LGA K 16 K 16 1.785 0 0.203 1.009 5.384 58.182 32.525 5.384 LGA N 17 N 17 4.090 0 0.653 1.417 6.880 11.364 5.909 5.174 LGA C 18 C 18 5.270 0 0.026 0.773 8.585 3.636 2.424 8.585 LGA E 19 E 19 7.071 0 0.332 1.061 8.115 0.000 0.000 7.423 LGA V 20 V 20 8.512 0 0.119 0.174 11.369 0.000 0.000 10.634 LGA R 21 R 21 13.488 0 0.095 1.414 16.722 0.000 0.000 16.722 LGA C 22 C 22 19.791 0 0.645 1.128 22.860 0.000 0.000 22.437 LGA D 23 D 23 22.911 0 0.645 1.307 25.404 0.000 0.000 22.306 LGA E 24 E 24 26.561 0 0.668 0.819 27.658 0.000 0.000 26.656 LGA S 25 S 25 30.110 0 0.590 0.933 33.140 0.000 0.000 33.140 LGA N 26 N 26 26.674 0 0.169 0.857 27.353 0.000 0.000 23.807 LGA H 27 H 27 21.936 0 0.660 1.132 23.563 0.000 0.000 23.563 LGA C 28 C 28 18.123 0 0.076 0.100 19.354 0.000 0.000 17.567 LGA V 29 V 29 16.863 0 0.082 0.445 19.141 0.000 0.000 18.141 LGA E 30 E 30 12.281 0 0.096 0.795 14.378 0.000 0.000 14.378 LGA V 31 V 31 7.687 0 0.177 1.221 9.402 0.455 0.260 8.896 LGA R 32 R 32 2.969 0 0.196 1.230 9.244 16.364 5.950 8.365 LGA C 33 C 33 3.438 0 0.178 0.771 6.325 17.273 13.636 4.840 LGA S 34 S 34 7.525 0 0.067 0.614 8.735 0.000 0.000 7.403 LGA D 35 D 35 7.936 0 0.085 0.206 11.417 0.000 0.000 10.576 LGA T 36 T 36 4.756 0 0.275 0.901 7.907 6.364 3.636 5.806 LGA K 37 K 37 3.240 0 0.135 1.572 11.274 36.364 16.364 11.274 LGA Y 38 Y 38 2.720 0 0.096 1.113 11.101 10.909 4.091 11.101 LGA T 39 T 39 5.975 0 0.524 0.524 10.829 1.818 1.039 8.266 LGA L 40 L 40 4.136 0 0.229 0.629 5.614 2.273 13.409 2.927 LGA C 41 C 41 4.967 0 0.479 1.305 7.378 1.818 1.039 6.340 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 9.436 9.403 9.904 30.698 23.253 11.175 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 22 2.30 48.780 44.982 0.916 LGA_LOCAL RMSD: 2.303 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.251 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.436 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.028478 * X + 0.334458 * Y + 0.941980 * Z + 2.975160 Y_new = 0.934580 * X + 0.343217 * Y + -0.093608 * Z + 3.686401 Z_new = -0.354612 * X + 0.877690 * Y + -0.322351 * Z + -1.034410 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.601259 0.362499 1.922775 [DEG: 91.7454 20.7697 110.1669 ] ZXZ: 1.471748 1.899009 -0.383974 [DEG: 84.3250 108.8052 -22.0001 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS282_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS282_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 22 2.30 44.982 9.44 REMARK ---------------------------------------------------------- MOLECULE T0955TS282_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 CB SER 1 -3.513 -14.598 -0.172 1.00 0.00 C ATOM 2 OG SER 1 -2.492 -15.581 -0.249 1.00 0.00 O ATOM 4 C SER 1 -2.117 -12.789 0.888 1.00 0.00 C ATOM 5 O SER 1 -2.652 -12.203 1.837 1.00 0.00 O ATOM 8 N SER 1 -2.149 -13.091 -1.595 1.00 0.00 N ATOM 10 CA SER 1 -2.949 -13.181 -0.341 1.00 0.00 C ATOM 11 N GLN 2 -0.816 -13.113 0.852 1.00 0.00 N ATOM 13 CA GLN 2 0.143 -12.819 1.935 1.00 0.00 C ATOM 14 CB GLN 2 0.944 -14.077 2.309 1.00 0.00 C ATOM 15 CG GLN 2 0.132 -15.171 2.995 1.00 0.00 C ATOM 16 CD GLN 2 0.970 -16.387 3.342 1.00 0.00 C ATOM 17 OE1 GLN 2 1.082 -17.323 2.551 1.00 0.00 O ATOM 18 NE2 GLN 2 1.562 -16.379 4.532 1.00 0.00 N ATOM 21 C GLN 2 1.109 -11.688 1.546 1.00 0.00 C ATOM 22 O GLN 2 1.512 -10.895 2.407 1.00 0.00 O ATOM 23 N GLU 3 1.466 -11.631 0.255 1.00 0.00 N ATOM 25 CA GLU 3 2.383 -10.624 -0.326 1.00 0.00 C ATOM 26 CB GLU 3 2.833 -11.049 -1.730 1.00 0.00 C ATOM 27 CG GLU 3 3.755 -12.266 -1.766 1.00 0.00 C ATOM 28 CD GLU 3 4.172 -12.646 -3.175 1.00 0.00 C ATOM 29 OE1 GLU 3 5.209 -12.136 -3.648 1.00 0.00 O ATOM 30 OE2 GLU 3 3.463 -13.456 -3.808 1.00 0.00 O ATOM 31 C GLU 3 1.822 -9.191 -0.377 1.00 0.00 C ATOM 32 O GLU 3 2.558 -8.232 -0.115 1.00 0.00 O ATOM 33 N THR 4 0.519 -9.067 -0.674 1.00 0.00 N ATOM 35 CA THR 4 -0.196 -7.773 -0.777 1.00 0.00 C ATOM 36 CB THR 4 -1.590 -7.934 -1.516 1.00 0.00 C ATOM 37 OG1 THR 4 -2.291 -6.682 -1.525 1.00 0.00 O ATOM 39 CG2 THR 4 -2.473 -9.028 -0.877 1.00 0.00 C ATOM 40 C THR 4 -0.334 -7.018 0.568 1.00 0.00 C ATOM 41 O THR 4 -0.116 -5.800 0.620 1.00 0.00 O ATOM 42 N ARG 5 -0.667 -7.759 1.637 1.00 0.00 N ATOM 44 CA ARG 5 -0.831 -7.221 3.004 1.00 0.00 C ATOM 45 CB ARG 5 -1.574 -8.222 3.920 1.00 0.00 C ATOM 46 CG ARG 5 -1.092 -9.693 3.904 1.00 0.00 C ATOM 47 CD ARG 5 -1.905 -10.578 4.848 1.00 0.00 C ATOM 48 NE ARG 5 -3.283 -10.784 4.390 1.00 0.00 N ATOM 50 CZ ARG 5 -4.202 -11.513 5.025 1.00 0.00 C ATOM 51 NH1 ARG 5 -5.418 -11.625 4.509 1.00 0.00 N ATOM 54 NH2 ARG 5 -3.922 -12.132 6.168 1.00 0.00 N ATOM 57 C ARG 5 0.493 -6.746 3.642 1.00 0.00 C ATOM 58 O ARG 5 0.535 -5.678 4.261 1.00 0.00 O ATOM 59 N LYS 6 1.561 -7.533 3.437 1.00 0.00 N ATOM 61 CA LYS 6 2.920 -7.256 3.950 1.00 0.00 C ATOM 62 CB LYS 6 3.827 -8.485 3.785 1.00 0.00 C ATOM 63 CG LYS 6 3.477 -9.662 4.688 1.00 0.00 C ATOM 64 CD LYS 6 4.425 -10.835 4.459 1.00 0.00 C ATOM 65 CE LYS 6 4.093 -12.028 5.353 1.00 0.00 C ATOM 66 NZ LYS 6 4.367 -11.782 6.802 1.00 0.00 N ATOM 70 C LYS 6 3.566 -6.033 3.275 1.00 0.00 C ATOM 71 O LYS 6 4.203 -5.216 3.952 1.00 0.00 O ATOM 72 N LYS 7 3.358 -5.905 1.954 1.00 0.00 N ATOM 74 CA LYS 7 3.884 -4.796 1.132 1.00 0.00 C ATOM 75 CB LYS 7 3.738 -5.104 -0.365 1.00 0.00 C ATOM 76 CG LYS 7 4.771 -6.081 -0.909 1.00 0.00 C ATOM 77 CD LYS 7 4.562 -6.336 -2.398 1.00 0.00 C ATOM 78 CE LYS 7 5.588 -7.315 -2.966 1.00 0.00 C ATOM 79 NZ LYS 7 5.423 -8.711 -2.463 1.00 0.00 N ATOM 83 C LYS 7 3.240 -3.439 1.461 1.00 0.00 C ATOM 84 O LYS 7 3.953 -2.440 1.602 1.00 0.00 O ATOM 85 N CYS 8 1.905 -3.422 1.606 1.00 0.00 N ATOM 87 CA CYS 8 1.136 -2.206 1.934 1.00 0.00 C ATOM 88 CB CYS 8 -0.364 -2.404 1.701 1.00 0.00 C ATOM 89 SG CYS 8 -1.141 -3.693 2.704 1.00 0.00 S ATOM 90 C CYS 8 1.402 -1.694 3.360 1.00 0.00 C ATOM 91 O CYS 8 1.462 -0.481 3.576 1.00 0.00 O ATOM 92 N THR 9 1.581 -2.629 4.307 1.00 0.00 N ATOM 94 CA THR 9 1.862 -2.327 5.727 1.00 0.00 C ATOM 95 CB THR 9 1.706 -3.581 6.637 1.00 0.00 C ATOM 96 OG1 THR 9 2.408 -4.690 6.062 1.00 0.00 O ATOM 98 CG2 THR 9 0.237 -3.932 6.830 1.00 0.00 C ATOM 99 C THR 9 3.250 -1.691 5.949 1.00 0.00 C ATOM 100 O THR 9 3.364 -0.725 6.715 1.00 0.00 O ATOM 101 N GLU 10 4.277 -2.204 5.249 1.00 0.00 N ATOM 103 CA GLU 10 5.660 -1.690 5.344 1.00 0.00 C ATOM 104 CB GLU 10 6.698 -2.688 4.775 1.00 0.00 C ATOM 105 CG GLU 10 6.548 -3.120 3.309 1.00 0.00 C ATOM 106 CD GLU 10 7.625 -4.097 2.874 1.00 0.00 C ATOM 107 OE1 GLU 10 7.413 -5.320 3.015 1.00 0.00 O ATOM 108 OE2 GLU 10 8.683 -3.641 2.389 1.00 0.00 O ATOM 109 C GLU 10 5.830 -0.276 4.754 1.00 0.00 C ATOM 110 O GLU 10 6.489 0.571 5.368 1.00 0.00 O ATOM 111 N MET 11 5.218 -0.034 3.582 1.00 0.00 N ATOM 113 CA MET 11 5.254 1.277 2.900 1.00 0.00 C ATOM 114 CG MET 11 3.380 0.658 1.151 1.00 0.00 C ATOM 115 SD MET 11 2.869 0.717 -0.581 1.00 0.00 S ATOM 116 CE MET 11 3.167 -0.968 -1.113 1.00 0.00 C ATOM 117 C MET 11 4.459 2.350 3.675 1.00 0.00 C ATOM 118 O MET 11 4.866 3.516 3.717 1.00 0.00 O ATOM 119 CB MET 11 4.797 1.191 1.422 1.00 0.00 C ATOM 120 N LYS 12 3.347 1.925 4.296 1.00 0.00 N ATOM 122 CA LYS 12 2.448 2.790 5.088 1.00 0.00 C ATOM 123 CB LYS 12 1.164 2.027 5.463 1.00 0.00 C ATOM 124 CG LYS 12 -0.130 2.849 5.395 1.00 0.00 C ATOM 125 CD LYS 12 -1.341 2.007 5.782 1.00 0.00 C ATOM 126 CE LYS 12 -2.641 2.806 5.722 1.00 0.00 C ATOM 127 NZ LYS 12 -3.047 3.180 4.333 1.00 0.00 N ATOM 131 C LYS 12 3.135 3.342 6.356 1.00 0.00 C ATOM 132 O LYS 12 3.022 4.541 6.639 1.00 0.00 O ATOM 133 N LYS 13 3.831 2.468 7.098 1.00 0.00 N ATOM 135 CA LYS 13 4.558 2.843 8.327 1.00 0.00 C ATOM 136 CB LYS 13 4.865 1.609 9.210 1.00 0.00 C ATOM 137 CG LYS 13 5.682 0.462 8.585 1.00 0.00 C ATOM 138 CD LYS 13 5.954 -0.628 9.612 1.00 0.00 C ATOM 139 CE LYS 13 6.835 -1.728 9.042 1.00 0.00 C ATOM 140 NZ LYS 13 7.105 -2.797 10.043 1.00 0.00 N ATOM 144 C LYS 13 5.816 3.712 8.109 1.00 0.00 C ATOM 145 O LYS 13 6.004 4.708 8.814 1.00 0.00 O ATOM 146 N LYS 14 6.653 3.322 7.135 1.00 0.00 N ATOM 148 CA LYS 14 7.909 4.024 6.793 1.00 0.00 C ATOM 149 CB LYS 14 8.824 3.111 5.962 1.00 0.00 C ATOM 150 CG LYS 14 9.409 1.925 6.723 1.00 0.00 C ATOM 151 CD LYS 14 10.298 1.079 5.828 1.00 0.00 C ATOM 152 CE LYS 14 10.881 -0.103 6.587 1.00 0.00 C ATOM 153 NZ LYS 14 11.755 -0.942 5.722 1.00 0.00 N ATOM 157 C LYS 14 7.800 5.406 6.114 1.00 0.00 C ATOM 158 O LYS 14 8.449 6.355 6.567 1.00 0.00 O ATOM 159 N PHE 15 6.989 5.512 5.049 1.00 0.00 N ATOM 161 CA PHE 15 6.785 6.768 4.290 1.00 0.00 C ATOM 162 CB PHE 15 6.221 6.456 2.876 1.00 0.00 C ATOM 163 CG PHE 15 7.195 5.723 1.955 1.00 0.00 C ATOM 164 CD1 PHE 15 7.272 4.309 1.957 1.00 0.00 C ATOM 165 CD2 PHE 15 8.036 6.441 1.072 1.00 0.00 C ATOM 166 CE1 PHE 15 8.170 3.620 1.100 1.00 0.00 C ATOM 167 CE2 PHE 15 8.941 5.765 0.209 1.00 0.00 C ATOM 168 CZ PHE 15 9.007 4.350 0.225 1.00 0.00 C ATOM 169 C PHE 15 5.958 7.868 4.985 1.00 0.00 C ATOM 170 O PHE 15 6.416 9.015 5.073 1.00 0.00 O ATOM 171 N LYS 16 4.788 7.476 5.519 1.00 0.00 N ATOM 173 CA LYS 16 3.778 8.298 6.249 1.00 0.00 C ATOM 174 CB LYS 16 3.712 9.775 5.771 1.00 0.00 C ATOM 175 CG LYS 16 3.345 10.797 6.854 1.00 0.00 C ATOM 176 CD LYS 16 3.305 12.212 6.289 1.00 0.00 C ATOM 177 CE LYS 16 2.942 13.248 7.350 1.00 0.00 C ATOM 178 NZ LYS 16 1.531 13.144 7.829 1.00 0.00 N ATOM 182 C LYS 16 2.428 7.607 5.971 1.00 0.00 C ATOM 183 O LYS 16 1.696 7.261 6.907 1.00 0.00 O ATOM 184 N ASN 17 2.128 7.425 4.675 1.00 0.00 N ATOM 186 CA ASN 17 0.902 6.787 4.158 1.00 0.00 C ATOM 187 CB ASN 17 -0.029 7.842 3.498 1.00 0.00 C ATOM 188 CG ASN 17 0.708 8.795 2.551 1.00 0.00 C ATOM 189 OD1 ASN 17 1.184 9.854 2.964 1.00 0.00 O ATOM 190 ND2 ASN 17 0.795 8.418 1.279 1.00 0.00 N ATOM 193 C ASN 17 1.296 5.679 3.156 1.00 0.00 C ATOM 194 O ASN 17 2.487 5.524 2.859 1.00 0.00 O ATOM 195 N CYS 18 0.308 4.920 2.652 1.00 0.00 N ATOM 197 CA CYS 18 0.514 3.826 1.674 1.00 0.00 C ATOM 198 CB CYS 18 -0.804 3.085 1.427 1.00 0.00 C ATOM 199 SG CYS 18 -0.666 1.580 0.426 1.00 0.00 S ATOM 200 C CYS 18 1.019 4.407 0.349 1.00 0.00 C ATOM 201 O CYS 18 0.720 5.571 0.051 1.00 0.00 O ATOM 202 N GLU 19 1.805 3.626 -0.420 1.00 0.00 N ATOM 204 CA GLU 19 2.378 4.051 -1.730 1.00 0.00 C ATOM 205 CB GLU 19 1.293 4.392 -2.778 1.00 0.00 C ATOM 206 CG GLU 19 0.350 3.226 -3.114 1.00 0.00 C ATOM 207 CD GLU 19 -1.121 3.544 -2.866 1.00 0.00 C ATOM 208 OE1 GLU 19 -1.856 3.772 -3.850 1.00 0.00 O ATOM 209 OE2 GLU 19 -1.548 3.551 -1.691 1.00 0.00 O ATOM 210 C GLU 19 3.407 5.188 -1.554 1.00 0.00 C ATOM 211 O GLU 19 3.411 5.841 -0.501 1.00 0.00 O ATOM 212 N VAL 20 4.285 5.406 -2.544 1.00 0.00 N ATOM 214 CA VAL 20 5.335 6.443 -2.445 1.00 0.00 C ATOM 215 CB VAL 20 6.651 6.041 -3.210 1.00 0.00 C ATOM 216 CG1 VAL 20 7.780 7.064 -2.966 1.00 0.00 C ATOM 217 CG2 VAL 20 7.134 4.676 -2.765 1.00 0.00 C ATOM 218 C VAL 20 4.797 7.776 -3.000 1.00 0.00 C ATOM 219 O VAL 20 4.065 7.818 -3.998 1.00 0.00 O ATOM 220 N ARG 21 5.130 8.838 -2.260 1.00 0.00 N ATOM 222 CA ARG 21 4.713 10.214 -2.524 1.00 0.00 C ATOM 223 CB ARG 21 4.165 10.842 -1.244 1.00 0.00 C ATOM 224 CG ARG 21 2.741 10.455 -0.879 1.00 0.00 C ATOM 225 CD ARG 21 2.241 11.319 0.270 1.00 0.00 C ATOM 226 NE ARG 21 0.807 11.151 0.521 1.00 0.00 N ATOM 228 CZ ARG 21 0.019 12.060 1.096 1.00 0.00 C ATOM 229 NH1 ARG 21 -1.268 11.793 1.274 1.00 0.00 N ATOM 232 NH2 ARG 21 0.500 13.234 1.495 1.00 0.00 N ATOM 235 C ARG 21 5.722 11.179 -3.148 1.00 0.00 C ATOM 236 O ARG 21 6.939 11.022 -2.989 1.00 0.00 O ATOM 237 N CYS 22 5.170 12.165 -3.869 1.00 0.00 N ATOM 239 CA CYS 22 5.887 13.263 -4.538 1.00 0.00 C ATOM 240 CB CYS 22 5.222 13.560 -5.880 1.00 0.00 C ATOM 241 SG CYS 22 5.743 15.079 -6.732 1.00 0.00 S ATOM 242 C CYS 22 5.722 14.460 -3.586 1.00 0.00 C ATOM 243 O CYS 22 6.341 15.518 -3.764 1.00 0.00 O ATOM 244 N ASP 23 4.903 14.225 -2.552 1.00 0.00 N ATOM 246 CA ASP 23 4.566 15.169 -1.480 1.00 0.00 C ATOM 247 CB ASP 23 3.194 14.773 -0.896 1.00 0.00 C ATOM 248 CG ASP 23 2.476 15.936 -0.206 1.00 0.00 C ATOM 249 OD1 ASP 23 2.669 16.121 1.015 1.00 0.00 O ATOM 250 OD2 ASP 23 1.707 16.654 -0.884 1.00 0.00 O ATOM 251 C ASP 23 5.680 15.059 -0.411 1.00 0.00 C ATOM 252 O ASP 23 5.868 15.972 0.402 1.00 0.00 O ATOM 253 N GLU 24 6.403 13.929 -0.457 1.00 0.00 N ATOM 255 CA GLU 24 7.525 13.592 0.441 1.00 0.00 C ATOM 256 CB GLU 24 7.141 12.448 1.393 1.00 0.00 C ATOM 257 CG GLU 24 6.075 12.808 2.428 1.00 0.00 C ATOM 258 CD GLU 24 5.741 11.655 3.353 1.00 0.00 C ATOM 259 OE1 GLU 24 4.923 10.793 2.966 1.00 0.00 O ATOM 260 OE2 GLU 24 6.295 11.614 4.472 1.00 0.00 O ATOM 261 C GLU 24 8.722 13.157 -0.419 1.00 0.00 C ATOM 262 O GLU 24 8.526 12.607 -1.510 1.00 0.00 O ATOM 263 N SER 25 9.945 13.415 0.068 1.00 0.00 N ATOM 265 CA SER 25 11.195 13.062 -0.633 1.00 0.00 C ATOM 266 CB SER 25 12.015 14.327 -0.953 1.00 0.00 C ATOM 267 OG SER 25 12.274 15.089 0.216 1.00 0.00 O ATOM 269 C SER 25 12.051 12.032 0.131 1.00 0.00 C ATOM 270 O SER 25 12.598 12.339 1.202 1.00 0.00 O ATOM 271 N ASN 26 12.105 10.800 -0.400 1.00 0.00 N ATOM 273 CA ASN 26 12.876 9.667 0.163 1.00 0.00 C ATOM 274 CB ASN 26 12.067 8.929 1.261 1.00 0.00 C ATOM 275 CG ASN 26 12.956 8.226 2.290 1.00 0.00 C ATOM 276 OD1 ASN 26 13.307 7.057 2.128 1.00 0.00 O ATOM 277 ND2 ASN 26 13.307 8.939 3.358 1.00 0.00 N ATOM 280 C ASN 26 13.230 8.694 -0.984 1.00 0.00 C ATOM 281 O ASN 26 14.398 8.315 -1.136 1.00 0.00 O ATOM 282 N HIS 27 12.211 8.309 -1.768 1.00 0.00 N ATOM 284 CA HIS 27 12.324 7.384 -2.913 1.00 0.00 C ATOM 285 CG HIS 27 11.889 5.185 -1.684 1.00 0.00 C ATOM 286 CD2 HIS 27 12.220 3.877 -1.810 1.00 0.00 C ATOM 287 ND1 HIS 27 12.100 5.504 -0.358 1.00 0.00 N ATOM 289 CE1 HIS 27 12.541 4.438 0.287 1.00 0.00 C ATOM 290 NE2 HIS 27 12.623 3.438 -0.571 1.00 0.00 N ATOM 292 C HIS 27 11.977 8.136 -4.215 1.00 0.00 C ATOM 293 O HIS 27 12.167 9.357 -4.271 1.00 0.00 O ATOM 294 CB HIS 27 11.384 6.177 -2.692 1.00 0.00 C ATOM 295 N CYS 28 11.496 7.419 -5.249 1.00 0.00 N ATOM 297 CA CYS 28 11.088 7.998 -6.550 1.00 0.00 C ATOM 298 CB CYS 28 10.654 6.895 -7.518 1.00 0.00 C ATOM 299 SG CYS 28 11.936 5.675 -7.884 1.00 0.00 S ATOM 300 C CYS 28 9.905 8.936 -6.285 1.00 0.00 C ATOM 301 O CYS 28 9.026 8.588 -5.483 1.00 0.00 O ATOM 302 N VAL 29 9.888 10.118 -6.919 1.00 0.00 N ATOM 304 CA VAL 29 8.806 11.074 -6.660 1.00 0.00 C ATOM 305 CB VAL 29 9.467 12.481 -6.283 1.00 0.00 C ATOM 306 CG1 VAL 29 8.752 13.699 -6.874 1.00 0.00 C ATOM 307 CG2 VAL 29 9.598 12.603 -4.775 1.00 0.00 C ATOM 308 C VAL 29 7.675 11.154 -7.721 1.00 0.00 C ATOM 309 O VAL 29 7.870 11.593 -8.865 1.00 0.00 O ATOM 310 N GLU 30 6.542 10.559 -7.318 1.00 0.00 N ATOM 312 CA GLU 30 5.221 10.518 -7.987 1.00 0.00 C ATOM 313 CB GLU 30 5.069 9.307 -8.925 1.00 0.00 C ATOM 314 CG GLU 30 5.859 9.446 -10.235 1.00 0.00 C ATOM 315 CD GLU 30 5.943 8.159 -11.033 1.00 0.00 C ATOM 316 OE1 GLU 30 6.840 7.336 -10.750 1.00 0.00 O ATOM 317 OE2 GLU 30 5.114 7.971 -11.948 1.00 0.00 O ATOM 318 C GLU 30 4.317 10.404 -6.743 1.00 0.00 C ATOM 319 O GLU 30 4.708 9.699 -5.803 1.00 0.00 O ATOM 320 N VAL 31 3.157 11.073 -6.687 1.00 0.00 N ATOM 322 CA VAL 31 2.300 10.976 -5.482 1.00 0.00 C ATOM 323 CB VAL 31 1.850 12.416 -4.947 1.00 0.00 C ATOM 324 CG1 VAL 31 1.061 13.213 -6.008 1.00 0.00 C ATOM 325 CG2 VAL 31 1.090 12.331 -3.611 1.00 0.00 C ATOM 326 C VAL 31 1.108 10.001 -5.593 1.00 0.00 C ATOM 327 O VAL 31 0.134 10.265 -6.297 1.00 0.00 O ATOM 328 N ARG 32 1.157 8.946 -4.773 1.00 0.00 N ATOM 330 CA ARG 32 0.103 7.930 -4.703 1.00 0.00 C ATOM 331 CB ARG 32 0.513 6.625 -5.423 1.00 0.00 C ATOM 332 CG ARG 32 -0.665 5.816 -5.991 1.00 0.00 C ATOM 333 CD ARG 32 -0.211 4.500 -6.614 1.00 0.00 C ATOM 334 NE ARG 32 -1.335 3.702 -7.115 1.00 0.00 N ATOM 336 CZ ARG 32 -1.655 2.472 -6.705 1.00 0.00 C ATOM 337 NH1 ARG 32 -2.699 1.855 -7.240 1.00 0.00 N ATOM 340 NH2 ARG 32 -0.948 1.857 -5.761 1.00 0.00 N ATOM 343 C ARG 32 -0.115 7.704 -3.206 1.00 0.00 C ATOM 344 O ARG 32 0.830 7.406 -2.466 1.00 0.00 O ATOM 345 N CYS 33 -1.338 8.002 -2.765 1.00 0.00 N ATOM 347 CA CYS 33 -1.772 7.847 -1.376 1.00 0.00 C ATOM 348 CB CYS 33 -1.702 9.192 -0.637 1.00 0.00 C ATOM 349 SG CYS 33 -2.599 10.550 -1.433 1.00 0.00 S ATOM 350 C CYS 33 -3.196 7.291 -1.406 1.00 0.00 C ATOM 351 O CYS 33 -3.561 6.468 -0.559 1.00 0.00 O ATOM 352 N SER 34 -3.984 7.751 -2.395 1.00 0.00 N ATOM 354 CA SER 34 -5.387 7.340 -2.609 1.00 0.00 C ATOM 355 CB SER 34 -6.344 8.154 -1.719 1.00 0.00 C ATOM 356 OG SER 34 -6.180 9.548 -1.920 1.00 0.00 O ATOM 358 C SER 34 -5.860 7.391 -4.079 1.00 0.00 C ATOM 359 O SER 34 -6.247 6.352 -4.626 1.00 0.00 O ATOM 360 N ASP 35 -5.825 8.582 -4.705 1.00 0.00 N ATOM 362 CA ASP 35 -6.281 8.793 -6.102 1.00 0.00 C ATOM 363 CB ASP 35 -7.674 9.484 -6.128 1.00 0.00 C ATOM 364 CG ASP 35 -7.753 10.728 -5.231 1.00 0.00 C ATOM 365 OD1 ASP 35 -8.117 10.588 -4.043 1.00 0.00 O ATOM 366 OD2 ASP 35 -7.464 11.841 -5.723 1.00 0.00 O ATOM 367 C ASP 35 -5.317 9.504 -7.083 1.00 0.00 C ATOM 368 O ASP 35 -5.441 9.323 -8.302 1.00 0.00 O ATOM 369 N THR 36 -4.352 10.269 -6.551 1.00 0.00 N ATOM 371 CA THR 36 -3.353 11.042 -7.337 1.00 0.00 C ATOM 372 CB THR 36 -2.617 12.077 -6.416 1.00 0.00 C ATOM 373 OG1 THR 36 -2.102 11.410 -5.256 1.00 0.00 O ATOM 375 CG2 THR 36 -3.561 13.195 -5.989 1.00 0.00 C ATOM 376 C THR 36 -2.330 10.176 -8.130 1.00 0.00 C ATOM 377 O THR 36 -2.589 8.985 -8.341 1.00 0.00 O ATOM 378 N LYS 37 -1.217 10.784 -8.589 1.00 0.00 N ATOM 380 CA LYS 37 -0.092 10.161 -9.351 1.00 0.00 C ATOM 381 CB LYS 37 1.188 10.993 -9.168 1.00 0.00 C ATOM 382 CG LYS 37 1.164 12.363 -9.840 1.00 0.00 C ATOM 383 CD LYS 37 2.467 13.117 -9.609 1.00 0.00 C ATOM 384 CE LYS 37 2.464 14.492 -10.274 1.00 0.00 C ATOM 385 NZ LYS 37 1.516 15.460 -9.642 1.00 0.00 N ATOM 389 C LYS 37 0.228 8.699 -8.981 1.00 0.00 C ATOM 390 O LYS 37 -0.063 8.285 -7.867 1.00 0.00 O ATOM 391 N TYR 38 0.775 7.917 -9.921 1.00 0.00 N ATOM 393 CA TYR 38 1.119 6.503 -9.679 1.00 0.00 C ATOM 394 CB TYR 38 0.681 5.650 -10.885 1.00 0.00 C ATOM 395 CG TYR 38 0.454 4.145 -10.658 1.00 0.00 C ATOM 396 CD1 TYR 38 -0.834 3.637 -10.359 1.00 0.00 C ATOM 397 CE1 TYR 38 -1.057 2.242 -10.192 1.00 0.00 C ATOM 398 CD2 TYR 38 1.518 3.216 -10.783 1.00 0.00 C ATOM 399 CE2 TYR 38 1.304 1.820 -10.616 1.00 0.00 C ATOM 400 CZ TYR 38 0.016 1.345 -10.322 1.00 0.00 C ATOM 401 OH TYR 38 -0.193 -0.006 -10.161 1.00 0.00 O ATOM 403 C TYR 38 2.623 6.308 -9.411 1.00 0.00 C ATOM 404 O TYR 38 3.456 6.808 -10.173 1.00 0.00 O ATOM 405 N THR 39 2.947 5.585 -8.326 1.00 0.00 N ATOM 407 CA THR 39 4.335 5.299 -7.911 1.00 0.00 C ATOM 408 CB THR 39 4.788 6.205 -6.713 1.00 0.00 C ATOM 409 OG1 THR 39 3.948 7.363 -6.647 1.00 0.00 O ATOM 411 CG2 THR 39 6.251 6.648 -6.883 1.00 0.00 C ATOM 412 C THR 39 4.528 3.826 -7.497 1.00 0.00 C ATOM 413 O THR 39 5.096 3.036 -8.260 1.00 0.00 O ATOM 414 N LEU 40 4.044 3.485 -6.293 1.00 0.00 N ATOM 416 CA LEU 40 4.164 2.154 -5.690 1.00 0.00 C ATOM 417 CB LEU 40 4.818 2.305 -4.290 1.00 0.00 C ATOM 418 CG LEU 40 5.757 1.226 -3.693 1.00 0.00 C ATOM 419 CD1 LEU 40 7.204 1.325 -4.218 1.00 0.00 C ATOM 420 CD2 LEU 40 5.767 1.373 -2.183 1.00 0.00 C ATOM 421 C LEU 40 2.795 1.450 -5.609 1.00 0.00 C ATOM 422 O LEU 40 1.756 2.095 -5.781 1.00 0.00 O ATOM 423 N CYS 41 2.817 0.125 -5.366 1.00 0.00 N ATOM 425 CA CYS 41 1.641 -0.783 -5.245 1.00 0.00 C ATOM 426 CB CYS 41 0.779 -0.441 -4.009 1.00 0.00 C ATOM 427 SG CYS 41 -0.510 -1.650 -3.596 1.00 0.00 S ATOM 428 C CYS 41 0.762 -0.906 -6.499 1.00 0.00 C ATOM 429 O CYS 41 0.540 0.118 -7.181 1.00 0.00 O ATOM 430 OXT CYS 41 0.312 -2.035 -6.786 1.00 0.00 O TER END