####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS281_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS281_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.81 1.81 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.81 1.81 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 17 - 33 0.96 2.60 LCS_AVERAGE: 36.41 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 4 12 15 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 14 41 41 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 14 41 41 5 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 14 41 41 5 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 14 41 41 5 10 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 14 41 41 5 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 14 41 41 5 10 22 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 14 41 41 5 10 22 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 12 41 41 4 8 23 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 17 41 41 4 10 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 17 41 41 5 17 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 17 41 41 4 13 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 17 41 41 3 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 17 41 41 3 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 17 41 41 3 13 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 17 41 41 6 13 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 17 41 41 5 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 17 41 41 9 14 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 17 41 41 3 13 23 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 17 41 41 6 13 23 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 17 41 41 4 13 23 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 17 41 41 6 13 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 17 41 41 6 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 17 41 41 6 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 17 41 41 6 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 17 41 41 6 17 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 14 41 41 3 4 21 29 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 14 41 41 3 10 22 31 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 14 41 41 3 17 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 14 41 41 5 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 14 41 41 6 17 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 14 41 41 3 13 21 30 35 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 14 41 41 3 13 21 27 34 38 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 14 41 41 6 13 21 26 34 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 78.80 ( 36.41 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 18 25 32 37 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 21.95 43.90 60.98 78.05 90.24 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.24 0.68 0.96 1.24 1.52 1.65 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 GDT RMS_ALL_AT 3.35 2.34 2.12 1.99 1.88 1.84 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 1.81 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.955 0 0.622 0.644 4.734 25.909 19.394 4.734 LGA Q 2 Q 2 2.214 0 0.223 1.007 4.715 51.364 27.879 4.615 LGA E 3 E 3 1.280 0 0.046 1.004 5.778 70.000 40.606 5.564 LGA T 4 T 4 0.863 0 0.062 0.975 2.263 81.818 71.169 1.918 LGA R 5 R 5 1.363 0 0.055 0.318 3.047 69.545 44.959 3.047 LGA K 6 K 6 0.943 0 0.030 1.233 5.041 77.727 50.101 4.299 LGA K 7 K 7 0.913 0 0.020 0.843 5.093 77.727 55.354 5.093 LGA C 8 C 8 0.955 0 0.014 0.104 1.497 77.727 73.636 1.497 LGA T 9 T 9 0.990 0 0.052 1.034 2.328 73.636 64.675 2.328 LGA E 10 E 10 1.852 0 0.029 0.644 3.787 51.364 33.535 3.513 LGA M 11 M 11 1.535 0 0.072 0.900 2.701 58.182 50.000 2.161 LGA K 12 K 12 1.247 0 0.025 0.750 1.940 58.182 62.424 1.220 LGA K 13 K 13 2.596 0 0.030 0.994 5.517 32.727 19.596 3.864 LGA K 14 K 14 2.791 0 0.068 0.683 5.377 32.727 18.586 3.758 LGA F 15 F 15 1.958 0 0.171 0.320 3.685 50.909 33.058 3.534 LGA K 16 K 16 1.912 0 0.025 1.210 2.604 50.909 45.859 2.101 LGA N 17 N 17 1.392 0 0.063 0.180 2.601 65.455 50.682 2.601 LGA C 18 C 18 0.842 0 0.110 0.222 1.816 90.909 80.000 1.816 LGA E 19 E 19 1.505 0 0.210 0.460 4.119 61.818 41.616 2.965 LGA V 20 V 20 1.078 0 0.108 1.321 3.861 65.455 57.662 1.058 LGA R 21 R 21 1.315 0 0.089 1.137 2.935 65.455 50.909 2.006 LGA C 22 C 22 1.879 0 0.134 0.800 3.010 51.364 41.818 3.010 LGA D 23 D 23 1.165 0 0.418 0.830 3.713 48.182 47.273 1.280 LGA E 24 E 24 1.548 0 0.054 0.859 3.644 61.818 37.778 3.264 LGA S 25 S 25 2.017 0 0.108 0.140 3.694 55.000 43.030 3.694 LGA N 26 N 26 1.706 0 0.253 1.287 5.407 55.000 33.636 5.407 LGA H 27 H 27 1.820 0 0.079 0.251 2.983 45.455 36.727 2.925 LGA C 28 C 28 1.818 0 0.085 0.697 3.903 61.818 49.394 3.903 LGA V 29 V 29 1.314 0 0.195 1.344 3.776 55.000 45.714 3.776 LGA E 30 E 30 0.433 0 0.161 0.659 1.685 95.455 88.687 1.685 LGA V 31 V 31 0.436 0 0.058 1.329 3.102 100.000 78.701 3.102 LGA R 32 R 32 0.819 0 0.115 0.742 2.651 74.091 51.736 2.026 LGA C 33 C 33 0.654 0 0.405 0.799 3.306 58.182 60.606 1.314 LGA S 34 S 34 3.054 0 0.564 0.997 6.978 17.727 21.212 3.053 LGA D 35 D 35 2.903 0 0.099 0.849 3.856 35.000 35.455 2.598 LGA T 36 T 36 0.984 0 0.025 1.181 4.390 70.000 57.922 4.390 LGA K 37 K 37 0.384 0 0.164 1.120 4.832 100.000 65.455 4.832 LGA Y 38 Y 38 0.965 0 0.102 1.214 10.296 66.364 31.212 10.296 LGA T 39 T 39 2.645 0 0.095 1.183 4.816 30.000 23.896 3.046 LGA L 40 L 40 3.557 0 0.144 0.984 6.554 12.727 9.773 3.874 LGA C 41 C 41 3.515 1 0.480 0.608 6.025 8.636 9.091 3.001 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 1.811 1.939 2.648 58.326 45.386 24.656 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.81 80.488 90.180 2.145 LGA_LOCAL RMSD: 1.811 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.811 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.811 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.246460 * X + 0.553808 * Y + 0.795333 * Z + 1.498892 Y_new = 0.468382 * X + -0.786509 * Y + 0.402520 * Z + 3.144266 Z_new = 0.848455 * X + 0.273314 * Y + -0.453236 * Z + 1.377628 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.086413 -1.013059 2.598950 [DEG: 62.2469 -58.0440 148.9089 ] ZXZ: 2.039314 2.041189 1.259161 [DEG: 116.8441 116.9515 72.1446 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS281_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS281_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.81 90.180 1.81 REMARK ---------------------------------------------------------- MOLECULE T0955TS281_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -0.513 -13.091 -1.996 1.00 0.50 ATOM 2 CA SER 1 -1.314 -12.529 -0.907 1.00 0.70 ATOM 3 C SER 1 -0.442 -12.094 0.279 1.00 0.60 ATOM 4 O SER 1 -0.667 -11.030 0.841 1.00 0.70 ATOM 6 CB SER 1 -2.459 -13.509 -0.443 1.00 0.70 ATOM 7 OG SER 1 -3.528 -13.663 -1.579 1.00 0.60 ATOM 8 N GLN 2 0.530 -12.922 0.669 1.00 0.50 ATOM 9 CA GLN 2 1.367 -12.607 1.840 1.00 0.60 ATOM 10 C GLN 2 2.255 -11.398 1.558 1.00 0.70 ATOM 11 O GLN 2 2.482 -10.576 2.448 1.00 0.70 ATOM 13 CB GLN 2 2.225 -13.827 2.272 1.00 0.70 ATOM 14 CG GLN 2 3.105 -13.560 3.470 1.00 0.40 ATOM 15 CD GLN 2 2.310 -13.333 4.723 1.00 0.60 ATOM 16 OE1 GLN 2 1.601 -14.254 5.174 1.00 0.50 ATOM 17 NE2 GLN 2 2.290 -12.118 5.260 1.00 0.40 ATOM 18 N GLU 3 2.740 -11.295 0.318 1.00 0.60 ATOM 19 CA GLU 3 3.589 -10.144 -0.089 1.00 0.50 ATOM 20 C GLU 3 2.805 -8.813 0.032 1.00 0.40 ATOM 21 O GLU 3 3.357 -7.795 0.467 1.00 0.70 ATOM 23 CB GLU 3 4.181 -10.368 -1.525 1.00 0.40 ATOM 24 CG GLU 3 5.191 -11.528 -1.586 1.00 0.50 ATOM 25 CD GLU 3 5.807 -11.814 -2.926 1.00 0.40 ATOM 26 OE1 GLU 3 5.457 -11.331 -3.965 1.00 0.50 ATOM 27 OE2 GLU 3 6.756 -12.621 -2.895 1.00 0.50 ATOM 28 N THR 4 1.520 -8.830 -0.317 1.00 0.70 ATOM 29 CA THR 4 0.715 -7.584 -0.328 1.00 0.40 ATOM 30 C THR 4 0.317 -7.177 1.081 1.00 0.70 ATOM 31 O THR 4 0.217 -5.996 1.372 1.00 0.70 ATOM 33 CB THR 4 -0.565 -7.760 -1.146 1.00 0.40 ATOM 34 OG1 THR 4 -0.391 -7.622 -2.657 1.00 0.60 ATOM 35 CG2 THR 4 -1.680 -6.760 -0.825 1.00 0.40 ATOM 36 N ARG 5 0.095 -8.161 1.951 1.00 0.40 ATOM 37 CA ARG 5 -0.199 -7.899 3.359 1.00 0.50 ATOM 38 C ARG 5 1.004 -7.195 4.002 1.00 0.70 ATOM 39 O ARG 5 0.833 -6.204 4.722 1.00 0.40 ATOM 41 CB ARG 5 -0.592 -9.161 4.113 1.00 0.60 ATOM 42 CG ARG 5 -1.876 -9.782 3.718 1.00 0.70 ATOM 43 CD ARG 5 -2.034 -11.014 4.611 1.00 0.50 ATOM 44 NE ARG 5 -3.291 -11.656 4.252 1.00 0.40 ATOM 45 CZ ARG 5 -3.744 -12.763 4.836 1.00 0.70 ATOM 46 NH1 ARG 5 -2.993 -13.380 5.746 1.00 0.40 ATOM 47 NH2 ARG 5 -4.921 -13.249 4.447 1.00 0.70 ATOM 48 N LYS 6 2.219 -7.667 3.706 1.00 0.70 ATOM 49 CA LYS 6 3.432 -7.022 4.202 1.00 0.50 ATOM 50 C LYS 6 3.608 -5.624 3.622 1.00 0.50 ATOM 51 O LYS 6 3.852 -4.705 4.392 1.00 0.40 ATOM 53 CB LYS 6 4.710 -7.842 3.970 1.00 0.40 ATOM 54 CG LYS 6 4.767 -9.119 4.765 1.00 0.40 ATOM 55 CD LYS 6 6.025 -9.884 4.508 1.00 0.70 ATOM 56 CE LYS 6 6.248 -11.169 5.207 1.00 0.60 ATOM 57 NZ LYS 6 7.561 -11.816 4.841 1.00 0.40 ATOM 58 N LYS 7 3.509 -5.464 2.306 1.00 0.40 ATOM 59 CA LYS 7 3.635 -4.132 1.663 1.00 0.70 ATOM 60 C LYS 7 2.617 -3.127 2.214 1.00 0.70 ATOM 61 O LYS 7 2.916 -1.949 2.359 1.00 0.50 ATOM 63 CB LYS 7 3.511 -4.236 0.133 1.00 0.60 ATOM 64 CG LYS 7 3.700 -2.927 -0.584 1.00 0.60 ATOM 65 CD LYS 7 3.570 -3.079 -2.066 1.00 0.70 ATOM 66 CE LYS 7 3.728 -1.891 -2.935 1.00 0.60 ATOM 67 NZ LYS 7 5.121 -1.312 -2.891 1.00 0.40 ATOM 68 N CYS 8 1.424 -3.604 2.549 1.00 0.70 ATOM 69 CA CYS 8 0.404 -2.736 3.139 1.00 0.50 ATOM 70 C CYS 8 0.891 -2.160 4.473 1.00 0.70 ATOM 71 O CYS 8 0.788 -0.965 4.724 1.00 0.40 ATOM 73 CB CYS 8 -0.912 -3.488 3.305 1.00 0.50 ATOM 74 SG CYS 8 -2.067 -2.647 3.850 1.00 0.40 ATOM 75 N THR 9 1.293 -3.010 5.396 1.00 0.40 ATOM 76 CA THR 9 1.676 -2.528 6.725 1.00 0.50 ATOM 77 C THR 9 2.867 -1.595 6.723 1.00 0.60 ATOM 78 O THR 9 2.888 -0.668 7.474 1.00 0.60 ATOM 80 CB THR 9 2.054 -3.667 7.640 1.00 0.60 ATOM 81 OG1 THR 9 3.218 -4.454 7.193 1.00 0.50 ATOM 82 CG2 THR 9 1.005 -4.677 7.834 1.00 0.70 ATOM 83 N GLU 10 3.923 -1.910 5.960 1.00 0.50 ATOM 84 CA GLU 10 5.161 -1.143 6.024 1.00 0.70 ATOM 85 C GLU 10 4.958 0.274 5.499 1.00 0.70 ATOM 86 O GLU 10 5.527 1.231 6.135 1.00 0.50 ATOM 88 CB GLU 10 6.295 -1.823 5.232 1.00 0.60 ATOM 89 CG GLU 10 6.762 -3.171 5.843 1.00 0.70 ATOM 90 CD GLU 10 7.866 -3.905 5.136 1.00 0.50 ATOM 91 OE1 GLU 10 8.300 -3.626 4.051 1.00 0.50 ATOM 92 OE2 GLU 10 8.333 -4.868 5.765 1.00 0.60 ATOM 93 N MET 11 4.450 0.395 4.269 1.00 0.50 ATOM 94 CA MET 11 4.638 1.603 3.475 1.00 0.60 ATOM 95 C MET 11 3.884 2.793 4.044 1.00 0.50 ATOM 96 O MET 11 4.428 3.897 4.090 1.00 0.50 ATOM 98 CB MET 11 4.160 1.429 2.033 1.00 0.60 ATOM 99 CG MET 11 4.980 0.402 1.272 1.00 0.70 ATOM 100 SD MET 11 6.707 0.922 1.053 1.00 0.50 ATOM 101 CE MET 11 6.509 2.266 -0.116 1.00 0.60 ATOM 102 N LYS 12 2.660 2.563 4.540 1.00 0.60 ATOM 103 CA LYS 12 1.896 3.667 5.144 1.00 0.70 ATOM 104 C LYS 12 2.574 4.188 6.428 1.00 0.50 ATOM 105 O LYS 12 2.470 5.314 6.788 1.00 0.40 ATOM 107 CB LYS 12 0.389 3.344 5.350 1.00 0.50 ATOM 108 CG LYS 12 0.154 2.198 6.285 1.00 0.60 ATOM 109 CD LYS 12 -1.310 1.926 6.450 1.00 0.40 ATOM 110 CE LYS 12 -1.746 0.827 7.338 1.00 0.50 ATOM 111 NZ LYS 12 -3.246 0.680 7.400 1.00 0.50 ATOM 112 N LYS 13 3.147 3.284 7.220 1.00 0.40 ATOM 113 CA LYS 13 3.881 3.647 8.429 1.00 0.40 ATOM 114 C LYS 13 5.086 4.549 8.063 1.00 0.70 ATOM 115 O LYS 13 5.335 5.542 8.621 1.00 0.70 ATOM 117 CB LYS 13 4.276 2.376 9.235 1.00 0.70 ATOM 118 CG LYS 13 4.972 2.687 10.525 1.00 0.50 ATOM 119 CD LYS 13 5.330 1.434 11.260 1.00 0.70 ATOM 120 CE LYS 13 6.026 1.534 12.562 1.00 0.50 ATOM 121 NZ LYS 13 6.319 0.188 13.178 1.00 0.50 ATOM 122 N LYS 14 5.945 4.161 7.140 1.00 0.40 ATOM 123 CA LYS 14 7.161 4.963 6.870 1.00 0.70 ATOM 124 C LYS 14 6.897 6.259 6.088 1.00 0.70 ATOM 125 O LYS 14 7.669 7.215 6.129 1.00 0.40 ATOM 127 CB LYS 14 8.238 4.105 6.231 1.00 0.50 ATOM 128 CG LYS 14 8.805 3.031 7.135 1.00 0.60 ATOM 129 CD LYS 14 9.861 2.215 6.456 1.00 0.50 ATOM 130 CE LYS 14 10.516 1.120 7.207 1.00 0.40 ATOM 131 NZ LYS 14 11.559 0.391 6.388 1.00 0.50 ATOM 132 N PHE 15 5.880 6.229 5.225 1.00 0.70 ATOM 133 CA PHE 15 5.550 7.364 4.366 1.00 0.50 ATOM 134 C PHE 15 4.167 7.872 4.764 1.00 0.40 ATOM 135 O PHE 15 3.162 7.452 4.014 1.00 0.50 ATOM 137 CB PHE 15 5.672 7.023 2.862 1.00 0.50 ATOM 138 CG PHE 15 7.043 6.697 2.345 1.00 0.50 ATOM 139 CD1 PHE 15 7.901 7.742 1.952 1.00 0.40 ATOM 140 CD2 PHE 15 7.513 5.407 2.250 1.00 0.40 ATOM 141 CE1 PHE 15 9.126 7.442 1.390 1.00 0.70 ATOM 142 CE2 PHE 15 8.730 5.076 1.713 1.00 0.50 ATOM 143 CZ PHE 15 9.573 6.138 1.286 1.00 0.50 ATOM 144 N LYS 16 4.157 8.689 5.809 1.00 0.70 ATOM 145 CA LYS 16 2.912 9.063 6.472 1.00 0.40 ATOM 146 C LYS 16 1.997 9.965 5.655 1.00 0.40 ATOM 147 O LYS 16 0.812 10.079 5.963 1.00 0.50 ATOM 149 CB LYS 16 3.200 9.717 7.846 1.00 0.70 ATOM 150 CG LYS 16 3.795 8.771 8.848 1.00 0.40 ATOM 151 CD LYS 16 4.053 9.451 10.155 1.00 0.50 ATOM 152 CE LYS 16 4.641 8.674 11.272 1.00 0.70 ATOM 153 NZ LYS 16 4.841 9.501 12.520 1.00 0.70 ATOM 154 N ASN 17 2.465 10.454 4.507 1.00 0.50 ATOM 155 CA ASN 17 1.640 11.287 3.641 1.00 0.60 ATOM 156 C ASN 17 0.916 10.487 2.564 1.00 0.40 ATOM 157 O ASN 17 -0.215 11.047 2.161 1.00 0.40 ATOM 159 CB ASN 17 2.530 12.133 2.719 1.00 0.70 ATOM 160 CG ASN 17 3.364 13.133 3.486 1.00 0.60 ATOM 161 OD1 ASN 17 2.813 14.143 3.937 1.00 0.70 ATOM 162 ND2 ASN 17 4.645 12.855 3.590 1.00 0.40 ATOM 163 N CYS 18 1.021 9.164 2.627 1.00 0.50 ATOM 164 CA CYS 18 0.359 8.294 1.645 1.00 0.50 ATOM 165 C CYS 18 -0.521 7.275 2.362 1.00 0.40 ATOM 166 O CYS 18 -0.742 7.129 3.415 1.00 0.60 ATOM 168 CB CYS 18 1.320 7.181 1.147 1.00 0.60 ATOM 169 SG CYS 18 2.482 7.801 0.376 1.00 0.50 ATOM 170 N GLU 19 -1.771 7.149 1.919 1.00 0.70 ATOM 171 CA GLU 19 -2.672 6.091 2.404 1.00 0.40 ATOM 172 C GLU 19 -2.605 4.874 1.491 1.00 0.70 ATOM 173 O GLU 19 -2.605 4.844 0.363 1.00 0.70 ATOM 175 CB GLU 19 -4.137 6.501 2.299 1.00 0.50 ATOM 176 CG GLU 19 -5.097 5.472 2.856 1.00 0.40 ATOM 177 CD GLU 19 -6.561 5.873 2.755 1.00 0.40 ATOM 178 OE1 GLU 19 -6.883 6.950 2.257 1.00 0.70 ATOM 179 OE2 GLU 19 -7.384 5.038 3.231 1.00 0.60 ATOM 180 N VAL 20 -2.285 3.720 2.086 1.00 0.60 ATOM 181 CA VAL 20 -2.058 2.480 1.335 1.00 0.60 ATOM 182 C VAL 20 -3.299 1.596 1.331 1.00 0.60 ATOM 183 O VAL 20 -3.895 1.436 2.501 1.00 0.60 ATOM 185 CB VAL 20 -0.807 1.741 1.832 1.00 0.70 ATOM 186 CG1 VAL 20 0.475 2.517 1.720 1.00 0.70 ATOM 187 CG2 VAL 20 -0.506 0.453 1.111 1.00 0.50 ATOM 188 N ARG 21 -3.531 0.949 0.193 1.00 0.60 ATOM 189 CA ARG 21 -4.642 0.022 0.002 1.00 0.50 ATOM 190 C ARG 21 -4.133 -1.275 -0.609 1.00 0.50 ATOM 191 O ARG 21 -3.715 -1.091 -1.896 1.00 0.70 ATOM 193 CB ARG 21 -5.829 0.683 -0.767 1.00 0.60 ATOM 194 CG ARG 21 -7.006 -0.172 -0.931 1.00 0.60 ATOM 195 CD ARG 21 -8.002 0.692 -1.699 1.00 0.70 ATOM 196 NE ARG 21 -9.207 -0.104 -1.899 1.00 0.50 ATOM 197 CZ ARG 21 -10.286 0.347 -2.539 1.00 0.40 ATOM 198 NH1 ARG 21 -10.321 1.613 -2.957 1.00 0.50 ATOM 199 NH2 ARG 21 -11.321 -0.475 -2.686 1.00 0.70 ATOM 200 N CYS 22 -4.204 -2.356 0.156 1.00 0.60 ATOM 201 CA CYS 22 -3.872 -3.665 -0.427 1.00 0.50 ATOM 202 C CYS 22 -5.115 -4.499 -0.670 1.00 0.70 ATOM 203 O CYS 22 -5.827 -4.824 0.280 1.00 0.40 ATOM 205 CB CYS 22 -2.901 -4.447 0.451 1.00 0.50 ATOM 206 SG CYS 22 -3.485 -4.764 1.846 1.00 0.60 ATOM 207 N ASP 23 -5.363 -4.826 -1.945 1.00 0.50 ATOM 208 CA ASP 23 -6.469 -5.708 -2.325 1.00 0.60 ATOM 209 C ASP 23 -5.909 -7.023 -2.823 1.00 0.40 ATOM 210 O ASP 23 -5.872 -7.291 -4.013 1.00 0.40 ATOM 212 CB ASP 23 -7.300 -5.087 -3.419 1.00 0.70 ATOM 213 CG ASP 23 -8.184 -3.919 -3.269 1.00 0.40 ATOM 214 OD1 ASP 23 -8.501 -3.543 -2.117 1.00 0.50 ATOM 215 OD2 ASP 23 -8.731 -3.616 -4.380 1.00 0.70 ATOM 216 N GLU 24 -5.383 -7.830 -1.909 1.00 0.70 ATOM 217 CA GLU 24 -4.776 -9.125 -2.310 1.00 0.50 ATOM 218 C GLU 24 -5.615 -9.965 -3.275 1.00 0.60 ATOM 219 O GLU 24 -5.076 -10.593 -4.177 1.00 0.60 ATOM 221 CB GLU 24 -4.363 -9.956 -1.099 1.00 0.70 ATOM 222 CG GLU 24 -5.509 -10.512 -0.290 1.00 0.50 ATOM 223 CD GLU 24 -6.170 -9.558 0.673 1.00 0.40 ATOM 224 OE1 GLU 24 -5.773 -8.389 0.775 1.00 0.70 ATOM 225 OE2 GLU 24 -7.105 -10.010 1.388 1.00 0.40 ATOM 226 N SER 25 -6.952 -9.972 -3.096 1.00 0.40 ATOM 227 CA SER 25 -7.774 -10.726 -4.044 1.00 0.70 ATOM 228 C SER 25 -7.643 -10.315 -5.504 1.00 0.60 ATOM 229 O SER 25 -7.870 -11.120 -6.373 1.00 0.70 ATOM 231 CB SER 25 -9.193 -10.479 -3.546 1.00 0.60 ATOM 232 OG SER 25 -9.230 -11.123 -2.225 1.00 0.50 ATOM 233 N ASN 26 -7.477 -9.033 -5.817 1.00 0.50 ATOM 234 CA ASN 26 -7.224 -8.670 -7.233 1.00 0.40 ATOM 235 C ASN 26 -5.728 -8.455 -7.509 1.00 0.70 ATOM 236 O ASN 26 -5.405 -7.625 -8.470 1.00 0.70 ATOM 238 CB ASN 26 -8.159 -7.564 -7.706 1.00 0.60 ATOM 239 CG ASN 26 -7.970 -7.225 -9.173 1.00 0.70 ATOM 240 OD1 ASN 26 -7.591 -8.123 -9.936 1.00 0.50 ATOM 241 ND2 ASN 26 -8.198 -5.977 -9.519 1.00 0.70 ATOM 242 N HIS 27 -4.888 -8.976 -6.634 1.00 0.50 ATOM 243 CA HIS 27 -3.446 -8.711 -6.762 1.00 0.60 ATOM 244 C HIS 27 -3.098 -7.246 -7.095 1.00 0.60 ATOM 245 O HIS 27 -2.276 -6.981 -8.004 1.00 0.70 ATOM 247 CB HIS 27 -2.842 -9.622 -7.843 1.00 0.70 ATOM 248 CG HIS 27 -2.913 -11.094 -7.456 1.00 0.50 ATOM 249 ND1 HIS 27 -2.134 -11.629 -6.433 1.00 0.40 ATOM 250 CD2 HIS 27 -3.638 -12.054 -8.035 1.00 0.50 ATOM 251 CE1 HIS 27 -2.424 -12.967 -6.328 1.00 0.40 ATOM 252 NE2 HIS 27 -3.354 -13.243 -7.324 1.00 0.50 ATOM 253 N CYS 28 -3.637 -6.321 -6.327 1.00 0.70 ATOM 254 CA CYS 28 -3.485 -4.879 -6.568 1.00 0.40 ATOM 255 C CYS 28 -2.999 -4.269 -5.268 1.00 0.50 ATOM 256 O CYS 28 -3.630 -4.654 -4.182 1.00 0.70 ATOM 258 CB CYS 28 -4.804 -4.205 -7.044 1.00 0.40 ATOM 259 SG CYS 28 -4.563 -2.830 -7.324 1.00 0.40 ATOM 260 N VAL 29 -2.145 -3.256 -5.384 1.00 0.70 ATOM 261 CA VAL 29 -1.822 -2.344 -4.279 1.00 0.50 ATOM 262 C VAL 29 -1.862 -0.911 -4.815 1.00 0.50 ATOM 263 O VAL 29 -1.887 -0.567 -5.883 1.00 0.40 ATOM 265 CB VAL 29 -0.331 -2.447 -3.843 1.00 0.60 ATOM 266 CG1 VAL 29 0.074 -3.843 -3.361 1.00 0.60 ATOM 267 CG2 VAL 29 0.042 -1.511 -2.694 1.00 0.40 ATOM 268 N GLU 30 -2.591 -0.020 -4.137 1.00 0.50 ATOM 269 CA GLU 30 -2.648 1.384 -4.524 1.00 0.60 ATOM 270 C GLU 30 -2.081 2.219 -3.396 1.00 0.60 ATOM 271 O GLU 30 -3.029 2.031 -2.270 1.00 0.40 ATOM 273 CB GLU 30 -4.048 1.777 -5.051 1.00 0.70 ATOM 274 CG GLU 30 -4.117 3.204 -5.527 1.00 0.50 ATOM 275 CD GLU 30 -5.491 3.598 -6.047 1.00 0.40 ATOM 276 OE1 GLU 30 -6.414 2.788 -6.053 1.00 0.40 ATOM 277 OE2 GLU 30 -5.585 4.786 -6.476 1.00 0.50 ATOM 278 N VAL 31 -1.216 3.185 -3.712 1.00 0.50 ATOM 279 CA VAL 31 -0.705 4.125 -2.725 1.00 0.50 ATOM 280 C VAL 31 -1.149 5.534 -3.089 1.00 0.50 ATOM 281 O VAL 31 -0.849 5.982 -4.242 1.00 0.70 ATOM 283 CB VAL 31 0.817 4.000 -2.627 1.00 0.60 ATOM 284 CG1 VAL 31 1.273 2.611 -2.212 1.00 0.60 ATOM 285 CG2 VAL 31 1.423 4.959 -1.613 1.00 0.40 ATOM 286 N ARG 32 -1.947 6.128 -2.213 1.00 0.70 ATOM 287 CA ARG 32 -2.527 7.435 -2.465 1.00 0.40 ATOM 288 C ARG 32 -1.687 8.427 -1.701 1.00 0.70 ATOM 289 O ARG 32 -1.638 8.543 -0.566 1.00 0.40 ATOM 291 CB ARG 32 -3.967 7.553 -1.927 1.00 0.40 ATOM 292 CG ARG 32 -4.970 6.711 -2.605 1.00 0.70 ATOM 293 CD ARG 32 -6.288 7.010 -1.894 1.00 0.70 ATOM 294 NE ARG 32 -7.319 6.196 -2.530 1.00 0.60 ATOM 295 CZ ARG 32 -8.596 6.209 -2.156 1.00 0.50 ATOM 296 NH1 ARG 32 -8.964 6.930 -1.096 1.00 0.70 ATOM 297 NH2 ARG 32 -9.458 5.448 -2.821 1.00 0.50 ATOM 298 N CYS 33 -1.064 9.354 -2.427 1.00 0.50 ATOM 299 CA CYS 33 -0.218 10.391 -1.850 1.00 0.40 ATOM 300 C CYS 33 0.014 11.455 -2.918 1.00 0.50 ATOM 301 O CYS 33 -0.894 11.567 -3.826 1.00 0.70 ATOM 303 CB CYS 33 1.236 9.914 -1.795 1.00 0.50 ATOM 304 SG CYS 33 2.179 10.921 -1.130 1.00 0.70 ATOM 305 N SER 34 0.649 12.538 -2.504 1.00 0.60 ATOM 306 CA SER 34 0.995 13.665 -3.372 1.00 0.40 ATOM 307 C SER 34 2.455 13.535 -3.810 1.00 0.60 ATOM 308 O SER 34 3.272 13.126 -2.893 1.00 0.60 ATOM 310 CB SER 34 0.678 15.003 -2.665 1.00 0.40 ATOM 311 OG SER 34 1.431 15.326 -1.357 1.00 0.50 ATOM 312 N ASP 35 2.857 13.950 -5.012 1.00 0.40 ATOM 313 CA ASP 35 1.972 14.414 -6.084 1.00 0.60 ATOM 314 C ASP 35 1.477 13.312 -7.034 1.00 0.70 ATOM 315 O ASP 35 0.505 13.600 -7.760 1.00 0.40 ATOM 317 CB ASP 35 2.903 15.272 -6.955 1.00 0.50 ATOM 318 CG ASP 35 3.452 16.561 -6.561 1.00 0.40 ATOM 319 OD1 ASP 35 2.964 17.177 -5.583 1.00 0.50 ATOM 320 OD2 ASP 35 4.217 17.009 -7.477 1.00 0.50 ATOM 321 N THR 36 1.939 12.073 -6.858 1.00 0.40 ATOM 322 CA THR 36 1.659 10.992 -7.793 1.00 0.70 ATOM 323 C THR 36 1.061 9.810 -7.049 1.00 0.50 ATOM 324 O THR 36 1.770 9.229 -6.192 1.00 0.50 ATOM 326 CB THR 36 2.964 10.567 -8.511 1.00 0.40 ATOM 327 OG1 THR 36 2.678 9.515 -9.592 1.00 0.40 ATOM 328 CG2 THR 36 4.012 10.030 -7.537 1.00 0.70 ATOM 329 N LYS 37 -0.178 9.443 -7.361 1.00 0.40 ATOM 330 CA LYS 37 -0.787 8.249 -6.793 1.00 0.40 ATOM 331 C LYS 37 -0.326 7.065 -7.654 1.00 0.60 ATOM 332 O LYS 37 0.071 7.240 -8.811 1.00 0.70 ATOM 334 CB LYS 37 -2.273 8.364 -6.802 1.00 0.40 ATOM 335 CG LYS 37 -2.914 8.490 -8.180 1.00 0.60 ATOM 336 CD LYS 37 -4.406 8.600 -8.135 1.00 0.40 ATOM 337 CE LYS 37 -5.162 8.729 -9.400 1.00 0.40 ATOM 338 NZ LYS 37 -6.653 8.832 -9.186 1.00 0.40 ATOM 339 N TYR 38 -0.306 5.875 -7.069 1.00 0.60 ATOM 340 CA TYR 38 0.237 4.713 -7.743 1.00 0.40 ATOM 341 C TYR 38 -0.695 3.513 -7.615 1.00 0.40 ATOM 342 O TYR 38 -1.095 3.158 -6.511 1.00 0.40 ATOM 344 CB TYR 38 1.628 4.317 -7.196 1.00 0.50 ATOM 345 CG TYR 38 2.396 3.609 -8.298 1.00 0.60 ATOM 346 CD1 TYR 38 3.040 4.286 -9.311 1.00 0.60 ATOM 347 CD2 TYR 38 2.448 2.213 -8.335 1.00 0.50 ATOM 348 CE1 TYR 38 3.708 3.636 -10.342 1.00 0.60 ATOM 349 CE2 TYR 38 3.065 1.535 -9.374 1.00 0.40 ATOM 350 CZ TYR 38 3.681 2.252 -10.375 1.00 0.60 ATOM 351 OH TYR 38 4.248 1.611 -11.448 1.00 0.70 ATOM 352 N THR 39 -0.995 2.884 -8.746 1.00 0.40 ATOM 353 CA THR 39 -1.750 1.647 -8.796 1.00 0.70 ATOM 354 C THR 39 -0.765 0.595 -9.277 1.00 0.60 ATOM 355 O THR 39 -0.214 0.717 -10.368 1.00 0.50 ATOM 357 CB THR 39 -2.930 1.761 -9.758 1.00 0.60 ATOM 358 OG1 THR 39 -3.595 0.476 -10.233 1.00 0.70 ATOM 359 CG2 THR 39 -2.691 2.439 -11.103 1.00 0.70 ATOM 360 N LEU 40 -0.568 -0.439 -8.472 1.00 0.40 ATOM 361 CA LEU 40 0.404 -1.484 -8.774 1.00 0.60 ATOM 362 C LEU 40 -0.345 -2.781 -8.827 1.00 0.50 ATOM 363 O LEU 40 -1.184 -3.031 -7.954 1.00 0.60 ATOM 365 CB LEU 40 1.497 -1.515 -7.698 1.00 0.40 ATOM 366 CG LEU 40 2.529 -2.593 -7.869 1.00 0.60 ATOM 367 CD1 LEU 40 3.577 -2.469 -6.783 1.00 0.50 ATOM 368 CD2 LEU 40 1.916 -3.987 -7.912 1.00 0.40 ATOM 369 N CYS 41 -0.074 -3.594 -9.855 1.00 0.40 ATOM 370 CA CYS 41 -0.705 -4.901 -10.014 1.00 0.40 ATOM 371 C CYS 41 0.216 -5.868 -10.749 1.00 0.50 ATOM 372 O CYS 41 0.945 -5.477 -11.647 1.00 0.40 ATOM 374 CB CYS 41 -2.007 -4.759 -10.800 1.00 0.40 ATOM 375 SG CYS 41 -3.056 -3.852 -10.158 1.00 0.40 TER END