####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS257_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 1 - 19 3.95 28.94 LCS_AVERAGE: 41.58 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.76 30.21 LCS_AVERAGE: 29.80 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.86 30.97 LCS_AVERAGE: 22.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 19 3 3 4 9 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT Q 2 Q 2 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT E 3 E 3 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT T 4 T 4 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT R 5 R 5 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT K 6 K 6 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT K 7 K 7 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT C 8 C 8 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT T 9 T 9 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT E 10 E 10 15 17 19 8 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT M 11 M 11 15 17 19 8 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT K 12 K 12 15 17 19 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT K 13 K 13 15 17 19 5 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT K 14 K 14 15 17 19 6 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT F 15 F 15 15 17 19 6 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT K 16 K 16 15 17 19 4 6 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT N 17 N 17 3 17 19 0 3 4 9 10 14 17 17 17 17 17 18 18 18 18 18 19 19 19 19 LCS_GDT C 18 C 18 6 8 19 0 6 6 6 8 9 10 11 12 12 15 18 18 18 18 18 19 19 19 19 LCS_GDT E 19 E 19 6 8 19 3 6 6 6 8 9 10 11 12 12 13 14 16 16 17 18 19 19 19 19 LCS_GDT V 20 V 20 6 8 17 4 6 6 6 8 9 10 11 12 12 13 14 16 16 17 17 18 19 19 19 LCS_GDT R 21 R 21 6 8 17 4 6 6 6 8 9 10 11 12 12 13 14 16 16 17 17 18 19 19 19 LCS_GDT C 22 C 22 6 8 17 4 6 6 6 8 9 10 11 12 12 13 14 16 16 17 17 18 19 19 19 LCS_GDT D 23 D 23 6 8 17 4 6 6 6 8 9 10 11 13 13 14 14 16 16 17 17 18 19 19 19 LCS_GDT E 24 E 24 4 7 17 3 3 5 6 8 9 10 11 13 13 14 14 16 16 17 17 18 19 19 19 LCS_GDT S 25 S 25 4 11 17 3 3 4 4 4 7 11 11 13 13 14 14 16 16 17 17 18 19 19 19 LCS_GDT N 26 N 26 4 11 17 3 4 8 9 10 10 11 11 13 13 14 14 16 16 17 17 18 19 19 19 LCS_GDT H 27 H 27 8 11 17 5 7 8 9 10 10 11 11 13 13 14 14 16 16 17 17 18 19 19 19 LCS_GDT C 28 C 28 8 11 17 5 7 8 9 10 10 11 11 13 13 14 14 16 16 17 17 17 19 19 19 LCS_GDT V 29 V 29 8 11 17 5 7 8 9 10 10 11 11 13 13 14 14 15 15 15 17 17 18 18 18 LCS_GDT E 30 E 30 8 11 16 5 7 8 9 10 10 11 11 13 13 14 14 15 15 15 16 16 16 18 18 LCS_GDT V 31 V 31 8 11 16 5 7 8 9 10 10 11 11 13 13 14 14 15 15 15 16 16 16 16 16 LCS_GDT R 32 R 32 8 11 16 5 7 8 9 10 10 11 11 13 13 14 14 15 15 15 16 16 16 16 16 LCS_GDT C 33 C 33 8 11 16 4 7 8 9 10 10 11 11 13 13 14 14 15 15 15 16 16 16 16 16 LCS_GDT S 34 S 34 8 11 16 4 7 8 9 10 10 11 11 13 13 14 14 15 15 15 16 16 16 16 16 LCS_GDT D 35 D 35 4 11 16 3 4 4 4 10 10 11 11 13 13 14 14 15 15 15 16 16 16 16 16 LCS_GDT T 36 T 36 6 6 16 3 6 6 6 6 7 7 10 12 13 14 14 15 15 15 16 16 16 16 16 LCS_GDT K 37 K 37 6 6 16 3 6 6 6 6 6 7 9 9 9 9 12 13 15 15 16 16 16 16 16 LCS_GDT Y 38 Y 38 6 6 10 3 6 6 6 6 7 7 9 9 9 9 10 10 10 10 10 10 11 13 14 LCS_GDT T 39 T 39 6 6 10 3 6 6 6 6 7 7 9 9 9 9 10 10 10 10 10 10 10 11 11 LCS_GDT L 40 L 40 6 6 10 3 6 6 6 6 7 7 9 9 9 9 10 10 10 10 10 10 10 11 11 LCS_GDT C 41 C 41 6 6 10 3 6 6 6 6 7 7 9 9 9 9 10 10 10 10 10 10 10 11 11 LCS_AVERAGE LCS_A: 31.39 ( 22.78 29.80 41.58 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 14 15 15 16 17 17 17 17 17 18 18 18 18 18 19 19 19 19 GDT PERCENT_AT 21.95 29.27 34.15 36.59 36.59 39.02 41.46 41.46 41.46 41.46 41.46 43.90 43.90 43.90 43.90 43.90 46.34 46.34 46.34 46.34 GDT RMS_LOCAL 0.33 0.55 0.71 0.86 0.86 1.18 1.76 1.76 1.76 1.76 1.76 2.84 2.84 2.84 2.84 2.84 3.95 3.95 3.95 3.95 GDT RMS_ALL_AT 32.19 31.68 31.16 30.97 30.97 30.76 30.21 30.21 30.21 30.21 30.21 29.65 29.65 29.65 29.65 29.65 28.94 28.94 28.94 28.94 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.516 0 0.071 0.110 5.226 22.273 19.697 3.718 LGA Q 2 Q 2 2.069 0 0.226 0.908 5.825 55.000 28.889 5.825 LGA E 3 E 3 0.882 0 0.052 1.217 6.404 77.727 47.475 3.583 LGA T 4 T 4 0.993 0 0.027 1.298 3.889 81.818 64.935 3.889 LGA R 5 R 5 0.996 0 0.038 1.016 5.272 81.818 47.934 5.272 LGA K 6 K 6 0.619 0 0.029 1.186 6.181 81.818 50.909 6.181 LGA K 7 K 7 0.608 0 0.040 0.648 2.636 81.818 61.212 2.236 LGA C 8 C 8 1.083 0 0.042 0.048 1.860 69.545 65.758 1.860 LGA T 9 T 9 0.987 0 0.019 0.931 3.182 77.727 65.974 1.809 LGA E 10 E 10 0.595 0 0.015 0.775 3.772 81.818 58.182 3.772 LGA M 11 M 11 0.649 0 0.069 1.007 4.041 82.273 67.045 4.041 LGA K 12 K 12 1.993 0 0.041 0.807 6.583 48.182 31.717 6.583 LGA K 13 K 13 2.367 0 0.030 0.588 4.252 41.364 28.283 2.959 LGA K 14 K 14 1.067 0 0.034 0.627 2.572 73.636 62.020 2.572 LGA F 15 F 15 0.705 0 0.455 1.451 6.284 58.182 33.388 6.284 LGA K 16 K 16 1.493 0 0.640 1.269 9.660 54.091 27.071 9.660 LGA N 17 N 17 4.710 0 0.644 1.012 6.529 10.000 15.909 3.220 LGA C 18 C 18 10.948 0 0.687 0.841 13.787 0.000 0.000 13.787 LGA E 19 E 19 15.114 0 0.262 1.164 22.644 0.000 0.000 22.644 LGA V 20 V 20 17.101 0 0.090 0.959 20.332 0.000 0.000 17.653 LGA R 21 R 21 22.187 0 0.056 1.043 24.162 0.000 0.000 24.162 LGA C 22 C 22 27.915 0 0.068 0.632 29.636 0.000 0.000 29.289 LGA D 23 D 23 32.591 0 0.685 1.341 35.646 0.000 0.000 30.569 LGA E 24 E 24 39.633 0 0.109 0.991 44.730 0.000 0.000 44.582 LGA S 25 S 25 41.003 0 0.570 0.725 42.378 0.000 0.000 42.378 LGA N 26 N 26 36.649 0 0.143 1.169 38.146 0.000 0.000 33.361 LGA H 27 H 27 35.672 0 0.453 1.068 42.099 0.000 0.000 42.099 LGA C 28 C 28 36.070 0 0.074 0.770 39.774 0.000 0.000 39.774 LGA V 29 V 29 34.396 0 0.099 0.279 34.929 0.000 0.000 32.591 LGA E 30 E 30 36.080 0 0.016 0.937 38.721 0.000 0.000 38.721 LGA V 31 V 31 34.735 0 0.041 0.167 36.225 0.000 0.000 33.575 LGA R 32 R 32 35.934 0 0.232 1.050 43.065 0.000 0.000 42.483 LGA C 33 C 33 35.363 0 0.201 0.921 37.646 0.000 0.000 37.646 LGA S 34 S 34 36.680 0 0.513 0.553 39.666 0.000 0.000 33.313 LGA D 35 D 35 41.163 0 0.119 0.896 45.043 0.000 0.000 42.642 LGA T 36 T 36 43.251 0 0.643 1.418 45.063 0.000 0.000 40.988 LGA K 37 K 37 46.264 0 0.634 1.165 49.360 0.000 0.000 48.013 LGA Y 38 Y 38 51.413 0 0.084 1.375 53.473 0.000 0.000 53.433 LGA T 39 T 39 55.830 0 0.148 0.977 59.478 0.000 0.000 55.784 LGA L 40 L 40 60.732 0 0.150 1.344 62.659 0.000 0.000 58.220 LGA C 41 C 41 66.970 0 0.196 0.738 68.221 0.000 0.000 65.999 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 18.365 18.341 19.113 26.319 18.937 6.386 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.76 37.805 36.676 0.914 LGA_LOCAL RMSD: 1.760 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 30.208 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 18.365 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.303121 * X + 0.939011 * Y + 0.162408 * Z + 7.473269 Y_new = -0.948360 * X + -0.280537 * Y + -0.148029 * Z + 16.964527 Z_new = -0.093439 * X + -0.198892 * Y + 0.975557 * Z + 5.273314 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.880161 0.093576 -0.201119 [DEG: -107.7253 5.3615 -11.5233 ] ZXZ: 0.831684 0.221555 -2.702396 [DEG: 47.6520 12.6942 -154.8359 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS257_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.76 36.676 18.36 REMARK ---------------------------------------------------------- MOLECULE T0955TS257_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 CB SER 1 -1.388 -13.495 -1.213 1.00 1.84 C ATOM 2 OG SER 1 -2.111 -14.261 -2.160 1.00 1.84 O ATOM 4 C SER 1 -1.164 -12.837 1.199 1.00 1.84 C ATOM 5 O SER 1 -1.437 -11.657 1.453 1.00 1.84 O ATOM 8 N SER 1 -3.415 -13.127 0.166 1.00 1.84 N ATOM 10 CA SER 1 -2.008 -13.617 0.183 1.00 1.84 C ATOM 11 N GLN 2 -0.151 -13.506 1.772 1.00 1.71 N ATOM 13 CA GLN 2 0.779 -12.940 2.774 1.00 1.71 C ATOM 14 CB GLN 2 1.600 -14.056 3.438 1.00 1.71 C ATOM 15 CG GLN 2 0.795 -14.986 4.341 1.00 1.71 C ATOM 16 CD GLN 2 1.648 -16.075 4.964 1.00 1.71 C ATOM 17 OE1 GLN 2 2.188 -15.906 6.058 1.00 1.71 O ATOM 18 NE2 GLN 2 1.772 -17.201 4.270 1.00 1.71 N ATOM 21 C GLN 2 1.726 -11.862 2.215 1.00 1.71 C ATOM 22 O GLN 2 2.004 -10.868 2.898 1.00 1.71 O ATOM 23 N GLU 3 2.188 -12.062 0.971 1.00 1.64 N ATOM 25 CA GLU 3 3.103 -11.143 0.257 1.00 1.64 C ATOM 26 CB GLU 3 3.654 -11.804 -1.015 1.00 1.64 C ATOM 27 CG GLU 3 4.623 -12.956 -0.766 1.00 1.64 C ATOM 28 CD GLU 3 5.144 -13.573 -2.051 1.00 1.64 C ATOM 29 OE1 GLU 3 4.514 -14.530 -2.551 1.00 1.64 O ATOM 30 OE2 GLU 3 6.184 -13.105 -2.560 1.00 1.64 O ATOM 31 C GLU 3 2.440 -9.799 -0.096 1.00 1.64 C ATOM 32 O GLU 3 3.075 -8.745 0.031 1.00 1.64 O ATOM 33 N THR 4 1.162 -9.855 -0.505 1.00 1.51 N ATOM 35 CA THR 4 0.348 -8.677 -0.876 1.00 1.51 C ATOM 36 CB THR 4 -0.986 -9.104 -1.574 1.00 1.51 C ATOM 37 OG1 THR 4 -0.799 -10.367 -2.225 1.00 1.51 O ATOM 39 CG2 THR 4 -1.406 -8.075 -2.637 1.00 1.51 C ATOM 40 C THR 4 0.050 -7.819 0.379 1.00 1.51 C ATOM 41 O THR 4 0.085 -6.583 0.308 1.00 1.51 O ATOM 42 N ARG 5 -0.198 -8.493 1.513 1.00 1.31 N ATOM 44 CA ARG 5 -0.489 -7.864 2.820 1.00 1.31 C ATOM 45 CB ARG 5 -1.019 -8.900 3.820 1.00 1.31 C ATOM 46 CG ARG 5 -2.443 -9.385 3.544 1.00 1.31 C ATOM 47 CD ARG 5 -2.917 -10.406 4.578 1.00 1.31 C ATOM 48 NE ARG 5 -3.102 -9.826 5.912 1.00 1.31 N ATOM 50 CZ ARG 5 -3.472 -10.501 7.000 1.00 1.31 C ATOM 51 NH1 ARG 5 -3.604 -9.861 8.154 1.00 1.31 N ATOM 54 NH2 ARG 5 -3.714 -11.808 6.951 1.00 1.31 N ATOM 57 C ARG 5 0.739 -7.146 3.409 1.00 1.31 C ATOM 58 O ARG 5 0.617 -6.023 3.914 1.00 1.31 O ATOM 59 N LYS 6 1.913 -7.792 3.306 1.00 1.26 N ATOM 61 CA LYS 6 3.204 -7.262 3.796 1.00 1.26 C ATOM 62 CB LYS 6 4.285 -8.352 3.786 1.00 1.26 C ATOM 63 CG LYS 6 4.121 -9.418 4.863 1.00 1.26 C ATOM 64 CD LYS 6 5.242 -10.450 4.798 1.00 1.26 C ATOM 65 CE LYS 6 5.092 -11.535 5.863 1.00 1.26 C ATOM 66 NZ LYS 6 5.310 -11.041 7.256 1.00 1.26 N ATOM 70 C LYS 6 3.672 -6.044 2.981 1.00 1.26 C ATOM 71 O LYS 6 4.134 -5.054 3.559 1.00 1.26 O ATOM 72 N LYS 7 3.510 -6.120 1.649 1.00 1.27 N ATOM 74 CA LYS 7 3.879 -5.045 0.703 1.00 1.27 C ATOM 75 CB LYS 7 3.841 -5.551 -0.745 1.00 1.27 C ATOM 76 CG LYS 7 5.004 -6.457 -1.131 1.00 1.27 C ATOM 77 CD LYS 7 4.893 -6.907 -2.580 1.00 1.27 C ATOM 78 CE LYS 7 6.051 -7.812 -2.971 1.00 1.27 C ATOM 79 NZ LYS 7 5.953 -8.252 -4.391 1.00 1.27 N ATOM 83 C LYS 7 2.974 -3.808 0.851 1.00 1.27 C ATOM 84 O LYS 7 3.463 -2.675 0.799 1.00 1.27 O ATOM 85 N CYS 8 1.671 -4.048 1.073 1.00 1.26 N ATOM 87 CA CYS 8 0.647 -2.999 1.257 1.00 1.26 C ATOM 88 CB CYS 8 -0.761 -3.609 1.205 1.00 1.26 C ATOM 89 SG CYS 8 -2.123 -2.412 1.180 1.00 1.26 S ATOM 90 C CYS 8 0.850 -2.236 2.580 1.00 1.26 C ATOM 91 O CYS 8 0.739 -1.005 2.607 1.00 1.26 O ATOM 92 N THR 9 1.178 -2.978 3.651 1.00 1.24 N ATOM 94 CA THR 9 1.428 -2.426 5.001 1.00 1.24 C ATOM 95 CB THR 9 1.477 -3.541 6.087 1.00 1.24 C ATOM 96 OG1 THR 9 2.339 -4.602 5.655 1.00 1.24 O ATOM 98 CG2 THR 9 0.082 -4.091 6.361 1.00 1.24 C ATOM 99 C THR 9 2.716 -1.580 5.058 1.00 1.24 C ATOM 100 O THR 9 2.723 -0.503 5.669 1.00 1.24 O ATOM 101 N GLU 10 3.774 -2.055 4.380 1.00 1.29 N ATOM 103 CA GLU 10 5.085 -1.375 4.301 1.00 1.29 C ATOM 104 CB GLU 10 6.153 -2.306 3.710 1.00 1.29 C ATOM 105 CG GLU 10 6.642 -3.393 4.663 1.00 1.29 C ATOM 106 CD GLU 10 7.705 -4.280 4.044 1.00 1.29 C ATOM 107 OE1 GLU 10 7.343 -5.310 3.435 1.00 1.29 O ATOM 108 OE2 GLU 10 8.904 -3.951 4.169 1.00 1.29 O ATOM 109 C GLU 10 5.010 -0.071 3.488 1.00 1.29 C ATOM 110 O GLU 10 5.600 0.940 3.887 1.00 1.29 O ATOM 111 N MET 11 4.259 -0.104 2.375 1.00 1.41 N ATOM 113 CA MET 11 4.049 1.053 1.477 1.00 1.41 C ATOM 114 CG MET 11 4.354 -0.074 -0.815 1.00 1.41 C ATOM 115 SD MET 11 3.553 -0.585 -2.351 1.00 1.41 S ATOM 116 CE MET 11 4.086 0.717 -3.475 1.00 1.41 C ATOM 117 C MET 11 3.205 2.159 2.137 1.00 1.41 C ATOM 118 O MET 11 3.524 3.345 1.996 1.00 1.41 O ATOM 119 CB MET 11 3.401 0.614 0.157 1.00 1.41 C ATOM 120 N LYS 12 2.155 1.751 2.871 1.00 1.54 N ATOM 122 CA LYS 12 1.239 2.660 3.595 1.00 1.54 C ATOM 123 CB LYS 12 -0.009 1.911 4.080 1.00 1.54 C ATOM 124 CG LYS 12 -1.036 1.627 2.993 1.00 1.54 C ATOM 125 CD LYS 12 -2.242 0.879 3.555 1.00 1.54 C ATOM 126 CE LYS 12 -3.304 0.615 2.490 1.00 1.54 C ATOM 127 NZ LYS 12 -3.988 1.856 2.016 1.00 1.54 N ATOM 131 C LYS 12 1.924 3.364 4.780 1.00 1.54 C ATOM 132 O LYS 12 1.695 4.558 5.005 1.00 1.54 O ATOM 133 N LYS 13 2.753 2.613 5.523 1.00 1.66 N ATOM 135 CA LYS 13 3.519 3.113 6.685 1.00 1.66 C ATOM 136 CB LYS 13 4.099 1.951 7.502 1.00 1.66 C ATOM 137 CG LYS 13 3.078 1.205 8.354 1.00 1.66 C ATOM 138 CD LYS 13 3.724 0.060 9.117 1.00 1.66 C ATOM 139 CE LYS 13 2.705 -0.676 9.972 1.00 1.66 C ATOM 140 NZ LYS 13 3.319 -1.809 10.720 1.00 1.66 N ATOM 144 C LYS 13 4.641 4.091 6.283 1.00 1.66 C ATOM 145 O LYS 13 4.823 5.123 6.939 1.00 1.66 O ATOM 146 N LYS 14 5.376 3.748 5.214 1.00 1.75 N ATOM 148 CA LYS 14 6.487 4.556 4.663 1.00 1.75 C ATOM 149 CB LYS 14 7.333 3.725 3.689 1.00 1.75 C ATOM 150 CG LYS 14 8.245 2.702 4.356 1.00 1.75 C ATOM 151 CD LYS 14 9.044 1.914 3.323 1.00 1.75 C ATOM 152 CE LYS 14 9.968 0.885 3.970 1.00 1.75 C ATOM 153 NZ LYS 14 11.108 1.495 4.719 1.00 1.75 N ATOM 157 C LYS 14 6.058 5.874 3.990 1.00 1.75 C ATOM 158 O LYS 14 6.729 6.897 4.161 1.00 1.75 O ATOM 159 N PHE 15 4.950 5.832 3.233 1.00 1.94 N ATOM 161 CA PHE 15 4.383 6.991 2.508 1.00 1.94 C ATOM 162 CB PHE 15 3.310 6.511 1.491 1.00 1.94 C ATOM 163 CG PHE 15 3.121 7.420 0.270 1.00 1.94 C ATOM 164 CD1 PHE 15 3.875 7.216 -0.912 1.00 1.94 C ATOM 165 CD2 PHE 15 2.159 8.460 0.283 1.00 1.94 C ATOM 166 CE1 PHE 15 3.677 8.030 -2.060 1.00 1.94 C ATOM 167 CE2 PHE 15 1.950 9.283 -0.858 1.00 1.94 C ATOM 168 CZ PHE 15 2.711 9.067 -2.033 1.00 1.94 C ATOM 169 C PHE 15 3.793 8.072 3.445 1.00 1.94 C ATOM 170 O PHE 15 3.972 9.270 3.192 1.00 1.94 O ATOM 171 N LYS 16 3.106 7.630 4.508 1.00 2.02 N ATOM 173 CA LYS 16 2.472 8.517 5.504 1.00 2.02 C ATOM 174 CB LYS 16 0.997 8.134 5.720 1.00 2.02 C ATOM 175 CG LYS 16 0.084 8.417 4.530 1.00 2.02 C ATOM 176 CD LYS 16 -1.357 8.021 4.830 1.00 2.02 C ATOM 177 CE LYS 16 -2.289 8.302 3.654 1.00 2.02 C ATOM 178 NZ LYS 16 -2.492 9.758 3.384 1.00 2.02 N ATOM 182 C LYS 16 3.224 8.524 6.847 1.00 2.02 C ATOM 183 O LYS 16 3.484 7.459 7.427 1.00 2.02 O ATOM 184 N ASN 17 3.598 9.728 7.300 1.00 2.90 N ATOM 186 CA ASN 17 4.324 9.960 8.564 1.00 2.90 C ATOM 187 CB ASN 17 5.771 10.459 8.300 1.00 2.90 C ATOM 188 CG ASN 17 5.867 11.476 7.157 1.00 2.90 C ATOM 189 OD1 ASN 17 5.806 12.684 7.379 1.00 2.90 O ATOM 190 ND2 ASN 17 6.033 10.980 5.934 1.00 2.90 N ATOM 193 C ASN 17 3.554 10.922 9.494 1.00 2.90 C ATOM 194 O ASN 17 2.568 11.535 9.062 1.00 2.90 O ATOM 195 N CYS 18 4.009 11.045 10.751 1.00 3.83 N ATOM 197 CA CYS 18 3.399 11.909 11.781 1.00 3.83 C ATOM 198 CB CYS 18 3.659 11.322 13.176 1.00 3.83 C ATOM 199 SG CYS 18 5.405 11.053 13.572 1.00 3.83 S ATOM 200 C CYS 18 3.872 13.377 11.722 1.00 3.83 C ATOM 201 O CYS 18 3.224 14.267 12.292 1.00 3.83 O ATOM 202 N GLU 19 4.977 13.610 10.999 1.00 4.56 N ATOM 204 CA GLU 19 5.590 14.942 10.817 1.00 4.56 C ATOM 205 CB GLU 19 7.121 14.844 10.856 1.00 4.56 C ATOM 206 CG GLU 19 7.705 14.493 12.223 1.00 4.56 C ATOM 207 CD GLU 19 9.221 14.410 12.209 1.00 4.56 C ATOM 208 OE1 GLU 19 9.877 15.445 12.450 1.00 4.56 O ATOM 209 OE2 GLU 19 9.755 13.308 11.959 1.00 4.56 O ATOM 210 C GLU 19 5.143 15.611 9.505 1.00 4.56 C ATOM 211 O GLU 19 4.952 14.924 8.494 1.00 4.56 O ATOM 212 N VAL 20 4.961 16.939 9.543 1.00 4.56 N ATOM 214 CA VAL 20 4.532 17.745 8.381 1.00 4.56 C ATOM 215 CB VAL 20 3.232 18.600 8.678 1.00 4.56 C ATOM 216 CG1 VAL 20 2.006 17.698 8.660 1.00 4.56 C ATOM 217 CG2 VAL 20 3.320 19.332 10.038 1.00 4.56 C ATOM 218 C VAL 20 5.658 18.637 7.812 1.00 4.56 C ATOM 219 O VAL 20 6.387 19.287 8.575 1.00 4.56 O ATOM 220 N ARG 21 5.799 18.620 6.480 1.00 4.38 N ATOM 222 CA ARG 21 6.816 19.395 5.741 1.00 4.38 C ATOM 223 CB ARG 21 7.739 18.466 4.912 1.00 4.38 C ATOM 224 CG ARG 21 7.058 17.356 4.082 1.00 4.38 C ATOM 225 CD ARG 21 8.082 16.517 3.334 1.00 4.38 C ATOM 226 NE ARG 21 7.453 15.451 2.550 1.00 4.38 N ATOM 228 CZ ARG 21 8.105 14.556 1.807 1.00 4.38 C ATOM 229 NH1 ARG 21 7.419 13.636 1.141 1.00 4.38 N ATOM 232 NH2 ARG 21 9.432 14.567 1.721 1.00 4.38 N ATOM 235 C ARG 21 6.221 20.511 4.861 1.00 4.38 C ATOM 236 O ARG 21 5.147 20.330 4.271 1.00 4.38 O ATOM 237 N CYS 22 6.923 21.653 4.801 1.00 5.14 N ATOM 239 CA CYS 22 6.530 22.834 4.011 1.00 5.14 C ATOM 240 CB CYS 22 6.489 24.084 4.904 1.00 5.14 C ATOM 241 SG CYS 22 7.998 24.396 5.846 1.00 5.14 S ATOM 242 C CYS 22 7.485 23.047 2.820 1.00 5.14 C ATOM 243 O CYS 22 8.555 22.425 2.769 1.00 5.14 O ATOM 244 N ASP 23 7.100 23.932 1.888 1.00 5.33 N ATOM 246 CA ASP 23 7.870 24.258 0.669 1.00 5.33 C ATOM 247 CB ASP 23 6.915 24.815 -0.409 1.00 5.33 C ATOM 248 CG ASP 23 7.367 24.492 -1.837 1.00 5.33 C ATOM 249 OD1 ASP 23 6.957 23.438 -2.372 1.00 5.33 O ATOM 250 OD2 ASP 23 8.118 25.300 -2.426 1.00 5.33 O ATOM 251 C ASP 23 9.033 25.247 0.934 1.00 5.33 C ATOM 252 O ASP 23 9.933 25.387 0.092 1.00 5.33 O ATOM 253 N GLU 24 9.017 25.888 2.111 1.00 6.66 N ATOM 255 CA GLU 24 10.043 26.864 2.530 1.00 6.66 C ATOM 256 CB GLU 24 9.391 28.081 3.209 1.00 6.66 C ATOM 257 CG GLU 24 8.571 28.969 2.277 1.00 6.66 C ATOM 258 CD GLU 24 7.943 30.149 2.995 1.00 6.66 C ATOM 259 OE1 GLU 24 8.585 31.218 3.061 1.00 6.66 O ATOM 260 OE2 GLU 24 6.804 30.008 3.492 1.00 6.66 O ATOM 261 C GLU 24 11.113 26.251 3.454 1.00 6.66 C ATOM 262 O GLU 24 12.312 26.419 3.200 1.00 6.66 O ATOM 263 N SER 25 10.668 25.552 4.509 1.00 6.46 N ATOM 265 CA SER 25 11.541 24.891 5.499 1.00 6.46 C ATOM 266 CB SER 25 11.367 25.544 6.883 1.00 6.46 C ATOM 267 OG SER 25 12.333 25.066 7.806 1.00 6.46 O ATOM 269 C SER 25 11.201 23.387 5.559 1.00 6.46 C ATOM 270 O SER 25 10.340 22.924 4.800 1.00 6.46 O ATOM 271 N ASN 26 11.877 22.643 6.449 1.00 5.30 N ATOM 273 CA ASN 26 11.675 21.193 6.634 1.00 5.30 C ATOM 274 CB ASN 26 13.021 20.487 6.875 1.00 5.30 C ATOM 275 CG ASN 26 13.946 20.541 5.663 1.00 5.30 C ATOM 276 OD1 ASN 26 13.924 19.651 4.810 1.00 5.30 O ATOM 277 ND2 ASN 26 14.774 21.580 5.594 1.00 5.30 N ATOM 280 C ASN 26 10.689 20.852 7.768 1.00 5.30 C ATOM 281 O ASN 26 9.787 20.029 7.568 1.00 5.30 O ATOM 282 N HIS 27 10.868 21.485 8.938 1.00 5.15 N ATOM 284 CA HIS 27 10.015 21.277 10.124 1.00 5.15 C ATOM 285 CG HIS 27 12.186 21.147 11.509 1.00 5.15 C ATOM 286 CD2 HIS 27 13.407 20.583 11.335 1.00 5.15 C ATOM 287 ND1 HIS 27 12.421 22.418 11.989 1.00 5.15 N ATOM 289 CE1 HIS 27 13.723 22.615 12.102 1.00 5.15 C ATOM 290 NE2 HIS 27 14.343 21.517 11.711 1.00 5.15 N ATOM 292 C HIS 27 9.284 22.549 10.606 1.00 5.15 C ATOM 293 O HIS 27 8.047 22.582 10.601 1.00 5.15 O ATOM 294 CB HIS 27 10.802 20.599 11.284 1.00 5.15 C ATOM 295 N CYS 28 10.050 23.572 11.013 1.00 5.20 N ATOM 297 CA CYS 28 9.519 24.859 11.505 1.00 5.20 C ATOM 298 CB CYS 28 9.971 25.120 12.952 1.00 5.20 C ATOM 299 SG CYS 28 11.764 25.124 13.211 1.00 5.20 S ATOM 300 C CYS 28 9.940 26.028 10.602 1.00 5.20 C ATOM 301 O CYS 28 11.065 26.038 10.087 1.00 5.20 O ATOM 302 N VAL 29 9.031 26.998 10.417 1.00 4.65 N ATOM 304 CA VAL 29 9.257 28.196 9.579 1.00 4.65 C ATOM 305 CB VAL 29 8.099 28.415 8.517 1.00 4.65 C ATOM 306 CG1 VAL 29 8.566 29.325 7.366 1.00 4.65 C ATOM 307 CG2 VAL 29 7.614 27.080 7.951 1.00 4.65 C ATOM 308 C VAL 29 9.385 29.437 10.498 1.00 4.65 C ATOM 309 O VAL 29 8.607 29.597 11.449 1.00 4.65 O ATOM 310 N GLU 30 10.399 30.268 10.216 1.00 4.29 N ATOM 312 CA GLU 30 10.697 31.504 10.965 1.00 4.29 C ATOM 313 CB GLU 30 12.052 31.403 11.689 1.00 4.29 C ATOM 314 CG GLU 30 12.087 30.403 12.841 1.00 4.29 C ATOM 315 CD GLU 30 13.439 30.346 13.528 1.00 4.29 C ATOM 316 OE1 GLU 30 13.650 31.110 14.493 1.00 4.29 O ATOM 317 OE2 GLU 30 14.290 29.535 13.103 1.00 4.29 O ATOM 318 C GLU 30 10.704 32.716 10.022 1.00 4.29 C ATOM 319 O GLU 30 11.138 32.601 8.869 1.00 4.29 O ATOM 320 N VAL 31 10.205 33.859 10.519 1.00 4.81 N ATOM 322 CA VAL 31 10.131 35.129 9.764 1.00 4.81 C ATOM 323 CB VAL 31 8.676 35.764 9.800 1.00 4.81 C ATOM 324 CG1 VAL 31 8.497 36.805 8.679 1.00 4.81 C ATOM 325 CG2 VAL 31 7.604 34.681 9.668 1.00 4.81 C ATOM 326 C VAL 31 11.162 36.113 10.369 1.00 4.81 C ATOM 327 O VAL 31 11.360 36.134 11.592 1.00 4.81 O ATOM 328 N ARG 32 11.822 36.887 9.495 1.00 4.38 N ATOM 330 CA ARG 32 12.845 37.879 9.876 1.00 4.38 C ATOM 331 CB ARG 32 14.172 37.607 9.149 1.00 4.38 C ATOM 332 CG ARG 32 14.892 36.328 9.586 1.00 4.38 C ATOM 333 CD ARG 32 16.190 36.098 8.814 1.00 4.38 C ATOM 334 NE ARG 32 17.233 37.072 9.146 1.00 4.38 N ATOM 336 CZ ARG 32 18.464 37.084 8.635 1.00 4.38 C ATOM 337 NH1 ARG 32 19.321 38.021 9.016 1.00 4.38 N ATOM 340 NH2 ARG 32 18.850 36.173 7.746 1.00 4.38 N ATOM 343 C ARG 32 12.386 39.318 9.593 1.00 4.38 C ATOM 344 O ARG 32 11.709 39.568 8.586 1.00 4.38 O ATOM 345 N CYS 33 12.748 40.241 10.497 1.00 4.77 N ATOM 347 CA CYS 33 12.413 41.674 10.404 1.00 4.77 C ATOM 348 CB CYS 33 11.705 42.142 11.685 1.00 4.77 C ATOM 349 SG CYS 33 11.038 43.827 11.626 1.00 4.77 S ATOM 350 C CYS 33 13.690 42.498 10.179 1.00 4.77 C ATOM 351 O CYS 33 13.654 43.528 9.494 1.00 4.77 O ATOM 352 N SER 34 14.812 42.015 10.746 1.00 5.56 N ATOM 354 CA SER 34 16.174 42.613 10.685 1.00 5.56 C ATOM 355 CB SER 34 16.839 42.374 9.313 1.00 5.56 C ATOM 356 OG SER 34 16.961 40.989 9.037 1.00 5.56 O ATOM 358 C SER 34 16.322 44.091 11.102 1.00 5.56 C ATOM 359 O SER 34 15.586 44.960 10.613 1.00 5.56 O ATOM 360 N ASP 35 17.268 44.346 12.019 1.00 5.88 N ATOM 362 CA ASP 35 17.577 45.687 12.553 1.00 5.88 C ATOM 363 CB ASP 35 17.349 45.707 14.083 1.00 5.88 C ATOM 364 CG ASP 35 17.040 47.105 14.627 1.00 5.88 C ATOM 365 OD1 ASP 35 15.846 47.472 14.693 1.00 5.88 O ATOM 366 OD2 ASP 35 17.990 47.826 15.003 1.00 5.88 O ATOM 367 C ASP 35 19.045 46.035 12.213 1.00 5.88 C ATOM 368 O ASP 35 19.491 47.168 12.447 1.00 5.88 O ATOM 369 N THR 36 19.760 45.064 11.624 1.00 7.86 N ATOM 371 CA THR 36 21.179 45.185 11.227 1.00 7.86 C ATOM 372 CB THR 36 21.931 43.788 11.351 1.00 7.86 C ATOM 373 OG1 THR 36 23.281 43.910 10.882 1.00 7.86 O ATOM 375 CG2 THR 36 21.207 42.660 10.580 1.00 7.86 C ATOM 376 C THR 36 21.396 45.846 9.838 1.00 7.86 C ATOM 377 O THR 36 22.505 46.309 9.531 1.00 7.86 O ATOM 378 N LYS 37 20.317 45.926 9.046 1.00 6.09 N ATOM 380 CA LYS 37 20.326 46.517 7.691 1.00 6.09 C ATOM 381 CB LYS 37 19.281 45.832 6.779 1.00 6.09 C ATOM 382 CG LYS 37 17.848 45.682 7.334 1.00 6.09 C ATOM 383 CD LYS 37 16.931 45.008 6.318 1.00 6.09 C ATOM 384 CE LYS 37 15.495 44.890 6.824 1.00 6.09 C ATOM 385 NZ LYS 37 14.792 46.203 6.933 1.00 6.09 N ATOM 389 C LYS 37 20.183 48.055 7.646 1.00 6.09 C ATOM 390 O LYS 37 20.880 48.718 6.871 1.00 6.09 O ATOM 391 N TYR 38 19.289 48.595 8.494 1.00 6.15 N ATOM 393 CA TYR 38 18.967 50.043 8.649 1.00 6.15 C ATOM 394 CB TYR 38 20.157 50.824 9.292 1.00 6.15 C ATOM 395 CG TYR 38 19.825 52.113 10.064 1.00 6.15 C ATOM 396 CD1 TYR 38 19.817 53.372 9.416 1.00 6.15 C ATOM 397 CE1 TYR 38 19.544 54.570 10.134 1.00 6.15 C ATOM 398 CD2 TYR 38 19.553 52.083 11.455 1.00 6.15 C ATOM 399 CE2 TYR 38 19.280 53.276 12.180 1.00 6.15 C ATOM 400 CZ TYR 38 19.278 54.510 11.511 1.00 6.15 C ATOM 401 OH TYR 38 19.013 55.666 12.211 1.00 6.15 O ATOM 403 C TYR 38 18.471 50.758 7.369 1.00 6.15 C ATOM 404 O TYR 38 18.990 50.510 6.273 1.00 6.15 O ATOM 405 N THR 39 17.479 51.645 7.538 1.00 6.51 N ATOM 407 CA THR 39 16.869 52.430 6.446 1.00 6.51 C ATOM 408 CB THR 39 15.311 52.289 6.427 1.00 6.51 C ATOM 409 OG1 THR 39 14.786 52.533 7.739 1.00 6.51 O ATOM 411 CG2 THR 39 14.899 50.898 5.963 1.00 6.51 C ATOM 412 C THR 39 17.250 53.921 6.544 1.00 6.51 C ATOM 413 O THR 39 17.369 54.462 7.653 1.00 6.51 O ATOM 414 N LEU 40 17.473 54.553 5.382 1.00 7.56 N ATOM 416 CA LEU 40 17.848 55.977 5.273 1.00 7.56 C ATOM 417 CB LEU 40 19.169 56.148 4.473 1.00 7.56 C ATOM 418 CG LEU 40 19.552 55.471 3.131 1.00 7.56 C ATOM 419 CD1 LEU 40 20.504 56.381 2.374 1.00 7.56 C ATOM 420 CD2 LEU 40 20.178 54.081 3.327 1.00 7.56 C ATOM 421 C LEU 40 16.725 56.850 4.682 1.00 7.56 C ATOM 422 O LEU 40 15.967 56.385 3.824 1.00 7.56 O ATOM 423 N CYS 41 16.651 58.112 5.145 1.00 8.63 N ATOM 425 CA CYS 41 15.667 59.160 4.748 1.00 8.63 C ATOM 426 CB CYS 41 16.029 59.805 3.393 1.00 8.63 C ATOM 427 SG CYS 41 16.019 58.682 1.974 1.00 8.63 S ATOM 428 C CYS 41 14.172 58.804 4.786 1.00 8.63 C ATOM 429 O CYS 41 13.400 59.617 5.336 1.00 8.63 O ATOM 430 OXT CYS 41 13.790 57.730 4.274 1.00 8.63 O TER END