####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS257_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 1 - 20 4.42 30.47 LCS_AVERAGE: 43.55 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.33 32.43 LONGEST_CONTINUOUS_SEGMENT: 17 2 - 18 1.97 31.99 LCS_AVERAGE: 30.99 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.96 32.68 LCS_AVERAGE: 22.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 20 3 3 4 15 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT Q 2 Q 2 15 17 20 5 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT E 3 E 3 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT T 4 T 4 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT R 5 R 5 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT K 6 K 6 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT K 7 K 7 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT C 8 C 8 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT T 9 T 9 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT E 10 E 10 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT M 11 M 11 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT K 12 K 12 15 17 20 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT K 13 K 13 15 17 20 4 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT K 14 K 14 15 17 20 5 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT F 15 F 15 15 17 20 5 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT K 16 K 16 15 17 20 4 6 10 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT N 17 N 17 3 17 20 3 4 12 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT C 18 C 18 5 17 20 3 5 5 8 9 11 11 13 15 18 18 18 18 19 19 19 19 19 20 20 LCS_GDT E 19 E 19 5 9 20 4 5 7 8 10 11 11 13 14 15 15 16 17 19 19 19 19 19 20 20 LCS_GDT V 20 V 20 5 9 20 4 5 7 8 10 11 11 13 14 15 15 16 17 17 18 18 19 19 20 20 LCS_GDT R 21 R 21 5 9 19 3 5 7 8 10 11 11 13 14 15 15 16 17 17 18 18 19 19 19 20 LCS_GDT C 22 C 22 5 9 19 3 5 7 8 10 11 11 13 14 15 15 16 17 17 18 18 19 19 19 20 LCS_GDT D 23 D 23 4 9 19 4 5 7 8 10 11 12 13 14 15 15 16 17 17 18 18 19 19 19 20 LCS_GDT E 24 E 24 4 11 19 3 4 5 8 10 11 12 13 14 15 15 16 17 17 18 18 19 19 19 20 LCS_GDT S 25 S 25 4 11 19 3 4 6 8 10 11 12 13 14 15 15 16 17 17 18 18 19 19 19 20 LCS_GDT N 26 N 26 4 11 19 3 3 4 8 10 11 12 13 14 15 15 16 17 17 18 18 19 19 19 20 LCS_GDT H 27 H 27 8 11 19 6 8 8 8 10 11 12 13 14 15 15 16 17 17 18 18 19 19 19 20 LCS_GDT C 28 C 28 8 11 19 6 8 8 8 10 11 12 12 13 15 15 16 16 17 18 18 19 19 19 20 LCS_GDT V 29 V 29 8 11 18 6 8 8 8 10 11 12 12 12 12 12 13 13 14 15 16 16 17 17 18 LCS_GDT E 30 E 30 8 11 15 6 8 8 8 10 11 12 12 12 12 12 13 13 14 15 15 15 16 16 17 LCS_GDT V 31 V 31 8 11 15 6 8 8 8 10 11 12 12 12 12 12 13 13 14 15 15 15 16 16 16 LCS_GDT R 32 R 32 8 11 15 6 8 8 8 10 11 12 12 12 12 12 13 13 14 15 15 15 16 16 16 LCS_GDT C 33 C 33 8 11 15 6 8 8 8 10 11 12 12 12 12 12 13 13 14 15 15 15 16 16 16 LCS_GDT S 34 S 34 8 11 15 6 8 8 8 10 11 12 12 12 12 12 13 13 14 15 15 15 16 16 16 LCS_GDT D 35 D 35 5 9 15 4 5 6 8 9 9 9 9 11 12 12 13 13 14 15 15 15 16 16 16 LCS_GDT T 36 T 36 5 7 15 4 5 5 5 7 7 7 9 10 10 12 12 13 14 15 15 15 16 16 16 LCS_GDT K 37 K 37 5 7 15 4 5 5 5 7 7 7 8 8 9 9 10 12 14 15 15 15 16 16 16 LCS_GDT Y 38 Y 38 5 7 12 4 5 5 5 7 7 7 8 8 9 9 9 9 10 10 11 11 13 16 16 LCS_GDT T 39 T 39 5 7 10 4 5 5 5 7 7 7 8 8 9 9 9 9 10 10 10 10 10 10 10 LCS_GDT L 40 L 40 5 7 10 4 5 5 5 7 7 7 8 8 9 9 9 9 10 10 10 10 10 10 10 LCS_GDT C 41 C 41 5 5 10 3 5 5 5 5 6 7 8 8 9 9 9 9 10 10 10 10 10 10 10 LCS_AVERAGE LCS_A: 32.20 ( 22.07 30.99 43.55 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 12 14 16 17 17 17 17 17 18 18 18 18 19 19 19 19 19 20 20 GDT PERCENT_AT 17.07 29.27 34.15 39.02 41.46 41.46 41.46 41.46 41.46 43.90 43.90 43.90 43.90 46.34 46.34 46.34 46.34 46.34 48.78 48.78 GDT RMS_LOCAL 0.26 0.58 0.77 1.11 1.33 1.33 1.33 1.33 1.33 2.02 2.02 2.02 2.02 3.30 3.30 3.30 3.30 3.30 4.42 4.42 GDT RMS_ALL_AT 32.88 33.44 32.90 32.50 32.43 32.43 32.43 32.43 32.43 31.98 31.98 31.98 31.98 31.18 31.18 31.18 31.18 31.18 30.47 30.47 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.886 0 0.647 0.689 4.072 25.909 20.000 4.072 LGA Q 2 Q 2 1.945 0 0.235 0.912 6.112 61.818 31.717 6.112 LGA E 3 E 3 0.708 0 0.071 1.119 4.903 81.818 50.505 4.298 LGA T 4 T 4 0.813 0 0.020 0.044 1.018 81.818 77.143 1.018 LGA R 5 R 5 0.848 0 0.034 1.036 4.088 81.818 61.983 4.088 LGA K 6 K 6 0.638 0 0.030 1.147 5.915 81.818 52.323 5.847 LGA K 7 K 7 0.651 0 0.032 1.085 4.549 81.818 57.576 4.549 LGA C 8 C 8 0.928 0 0.045 0.761 4.005 81.818 66.364 4.005 LGA T 9 T 9 0.759 0 0.008 0.104 1.290 81.818 79.481 0.968 LGA E 10 E 10 0.254 0 0.025 0.779 3.800 100.000 68.283 3.800 LGA M 11 M 11 0.439 0 0.091 1.000 3.602 90.909 77.500 3.602 LGA K 12 K 12 1.472 0 0.027 0.760 2.059 61.818 59.798 1.746 LGA K 13 K 13 1.677 0 0.023 0.594 3.802 61.818 41.010 2.580 LGA K 14 K 14 0.879 0 0.025 0.106 2.254 77.727 61.616 2.019 LGA F 15 F 15 0.875 0 0.442 1.443 5.799 57.727 35.537 5.799 LGA K 16 K 16 1.796 0 0.657 1.527 5.999 56.364 35.758 5.999 LGA N 17 N 17 1.967 0 0.638 0.564 6.572 28.182 14.773 6.392 LGA C 18 C 18 7.060 0 0.419 0.672 10.318 0.455 0.303 10.318 LGA E 19 E 19 13.022 0 0.259 1.157 19.466 0.000 0.000 18.738 LGA V 20 V 20 15.898 0 0.141 0.250 19.177 0.000 0.000 15.396 LGA R 21 R 21 23.267 0 0.025 1.033 31.128 0.000 0.000 31.128 LGA C 22 C 22 27.268 0 0.642 1.114 31.416 0.000 0.000 26.027 LGA D 23 D 23 34.510 0 0.243 1.180 37.081 0.000 0.000 37.081 LGA E 24 E 24 40.007 0 0.232 0.801 47.822 0.000 0.000 47.822 LGA S 25 S 25 41.408 0 0.128 0.595 44.209 0.000 0.000 44.209 LGA N 26 N 26 38.756 0 0.665 1.038 39.895 0.000 0.000 35.408 LGA H 27 H 27 36.894 0 0.473 1.254 41.370 0.000 0.000 41.370 LGA C 28 C 28 38.428 0 0.083 0.770 39.871 0.000 0.000 39.871 LGA V 29 V 29 37.764 0 0.119 0.995 38.796 0.000 0.000 34.437 LGA E 30 E 30 40.224 0 0.059 0.336 42.272 0.000 0.000 42.272 LGA V 31 V 31 40.312 0 0.048 1.091 41.998 0.000 0.000 38.964 LGA R 32 R 32 42.666 0 0.213 1.290 45.422 0.000 0.000 45.422 LGA C 33 C 33 43.052 0 0.195 0.223 44.721 0.000 0.000 41.754 LGA S 34 S 34 44.920 0 0.513 0.574 45.333 0.000 0.000 43.558 LGA D 35 D 35 46.611 0 0.033 1.255 47.550 0.000 0.000 47.550 LGA T 36 T 36 47.889 0 0.104 0.253 49.386 0.000 0.000 48.435 LGA K 37 K 37 48.972 0 0.632 1.746 51.797 0.000 0.000 49.454 LGA Y 38 Y 38 53.212 0 0.036 1.375 55.278 0.000 0.000 49.989 LGA T 39 T 39 59.782 0 0.147 0.977 62.122 0.000 0.000 61.131 LGA L 40 L 40 63.028 0 0.614 1.271 66.444 0.000 0.000 58.361 LGA C 41 C 41 69.807 0 0.212 0.844 72.661 0.000 0.000 72.661 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 17.941 17.960 18.626 29.157 21.748 7.539 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.33 39.024 37.990 1.188 LGA_LOCAL RMSD: 1.331 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 32.426 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 17.941 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.344575 * X + -0.923879 * Y + -0.166480 * Z + 10.693284 Y_new = -0.783656 * X + 0.185444 * Y + 0.592869 * Z + 12.364044 Z_new = -0.516866 * X + 0.334751 * Y + -0.787903 * Z + 12.338262 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.985053 0.543186 2.739837 [DEG: -113.7352 31.1223 156.9811 ] ZXZ: -2.867838 2.478192 -0.996071 [DEG: -164.3150 141.9899 -57.0707 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS257_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.33 37.990 17.94 REMARK ---------------------------------------------------------- MOLECULE T0955TS257_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 CB SER 1 -3.431 -14.249 1.174 1.00 1.62 C ATOM 2 OG SER 1 -2.882 -15.353 1.874 1.00 1.62 O ATOM 4 C SER 1 -1.390 -12.777 1.276 1.00 1.62 C ATOM 5 O SER 1 -1.612 -11.605 1.601 1.00 1.62 O ATOM 8 N SER 1 -1.653 -14.477 -0.540 1.00 1.62 N ATOM 10 CA SER 1 -2.365 -13.517 0.350 1.00 1.62 C ATOM 11 N GLN 2 -0.324 -13.474 1.697 1.00 1.58 N ATOM 13 CA GLN 2 0.733 -12.946 2.589 1.00 1.58 C ATOM 14 CB GLN 2 1.603 -14.089 3.132 1.00 1.58 C ATOM 15 CG GLN 2 0.898 -15.018 4.116 1.00 1.58 C ATOM 16 CD GLN 2 1.802 -16.127 4.620 1.00 1.58 C ATOM 17 OE1 GLN 2 2.479 -15.976 5.637 1.00 1.58 O ATOM 18 NE2 GLN 2 1.817 -17.250 3.909 1.00 1.58 N ATOM 21 C GLN 2 1.630 -11.871 1.949 1.00 1.58 C ATOM 22 O GLN 2 1.978 -10.886 2.609 1.00 1.58 O ATOM 23 N GLU 3 1.952 -12.054 0.659 1.00 1.45 N ATOM 25 CA GLU 3 2.809 -11.138 -0.128 1.00 1.45 C ATOM 26 CB GLU 3 3.200 -11.778 -1.468 1.00 1.45 C ATOM 27 CG GLU 3 4.155 -12.964 -1.355 1.00 1.45 C ATOM 28 CD GLU 3 4.511 -13.562 -2.703 1.00 1.45 C ATOM 29 OE1 GLU 3 3.798 -14.484 -3.154 1.00 1.45 O ATOM 30 OE2 GLU 3 5.505 -13.113 -3.312 1.00 1.45 O ATOM 31 C GLU 3 2.168 -9.760 -0.372 1.00 1.45 C ATOM 32 O GLU 3 2.840 -8.732 -0.218 1.00 1.45 O ATOM 33 N THR 4 0.868 -9.756 -0.710 1.00 1.27 N ATOM 35 CA THR 4 0.081 -8.531 -0.968 1.00 1.27 C ATOM 36 CB THR 4 -1.277 -8.842 -1.725 1.00 1.27 C ATOM 37 OG1 THR 4 -2.049 -7.642 -1.866 1.00 1.27 O ATOM 39 CG2 THR 4 -2.115 -9.927 -1.018 1.00 1.27 C ATOM 40 C THR 4 -0.134 -7.692 0.315 1.00 1.27 C ATOM 41 O THR 4 -0.006 -6.460 0.284 1.00 1.27 O ATOM 42 N ARG 5 -0.402 -8.387 1.432 1.00 1.11 N ATOM 44 CA ARG 5 -0.621 -7.780 2.761 1.00 1.11 C ATOM 45 CB ARG 5 -1.178 -8.812 3.752 1.00 1.11 C ATOM 46 CG ARG 5 -2.630 -9.206 3.509 1.00 1.11 C ATOM 47 CD ARG 5 -3.102 -10.227 4.533 1.00 1.11 C ATOM 48 NE ARG 5 -4.497 -10.618 4.319 1.00 1.11 N ATOM 50 CZ ARG 5 -5.173 -11.492 5.066 1.00 1.11 C ATOM 51 NH1 ARG 5 -6.437 -11.764 4.771 1.00 1.11 N ATOM 54 NH2 ARG 5 -4.602 -12.098 6.102 1.00 1.11 N ATOM 57 C ARG 5 0.671 -7.158 3.319 1.00 1.11 C ATOM 58 O ARG 5 0.635 -6.053 3.869 1.00 1.11 O ATOM 59 N LYS 6 1.803 -7.851 3.116 1.00 1.21 N ATOM 61 CA LYS 6 3.138 -7.409 3.568 1.00 1.21 C ATOM 62 CB LYS 6 4.163 -8.545 3.455 1.00 1.21 C ATOM 63 CG LYS 6 4.089 -9.571 4.578 1.00 1.21 C ATOM 64 CD LYS 6 5.134 -10.667 4.397 1.00 1.21 C ATOM 65 CE LYS 6 5.075 -11.709 5.511 1.00 1.21 C ATOM 66 NZ LYS 6 5.510 -11.188 6.843 1.00 1.21 N ATOM 70 C LYS 6 3.646 -6.161 2.825 1.00 1.21 C ATOM 71 O LYS 6 4.136 -5.226 3.468 1.00 1.21 O ATOM 72 N LYS 7 3.492 -6.140 1.490 1.00 1.18 N ATOM 74 CA LYS 7 3.915 -5.000 0.652 1.00 1.18 C ATOM 75 CB LYS 7 4.000 -5.371 -0.848 1.00 1.18 C ATOM 76 CG LYS 7 2.713 -5.823 -1.557 1.00 1.18 C ATOM 77 CD LYS 7 2.968 -6.064 -3.042 1.00 1.18 C ATOM 78 CE LYS 7 1.696 -6.429 -3.802 1.00 1.18 C ATOM 79 NZ LYS 7 0.721 -5.303 -3.911 1.00 1.18 N ATOM 83 C LYS 7 3.059 -3.738 0.891 1.00 1.18 C ATOM 84 O LYS 7 3.591 -2.625 0.904 1.00 1.18 O ATOM 85 N CYS 8 1.751 -3.940 1.114 1.00 1.11 N ATOM 87 CA CYS 8 0.780 -2.859 1.384 1.00 1.11 C ATOM 88 CB CYS 8 -0.656 -3.392 1.314 1.00 1.11 C ATOM 89 SG CYS 8 -1.194 -3.877 -0.342 1.00 1.11 S ATOM 90 C CYS 8 1.028 -2.178 2.743 1.00 1.11 C ATOM 91 O CYS 8 0.968 -0.946 2.832 1.00 1.11 O ATOM 92 N THR 9 1.340 -2.984 3.771 1.00 1.13 N ATOM 94 CA THR 9 1.630 -2.508 5.142 1.00 1.13 C ATOM 95 CB THR 9 1.635 -3.686 6.177 1.00 1.13 C ATOM 96 OG1 THR 9 0.540 -4.565 5.897 1.00 1.13 O ATOM 98 CG2 THR 9 1.462 -3.172 7.619 1.00 1.13 C ATOM 99 C THR 9 2.969 -1.729 5.173 1.00 1.13 C ATOM 100 O THR 9 3.052 -0.670 5.807 1.00 1.13 O ATOM 101 N GLU 10 3.978 -2.240 4.448 1.00 1.24 N ATOM 103 CA GLU 10 5.319 -1.628 4.347 1.00 1.24 C ATOM 104 CB GLU 10 6.313 -2.588 3.682 1.00 1.24 C ATOM 105 CG GLU 10 6.765 -3.746 4.568 1.00 1.24 C ATOM 106 CD GLU 10 7.742 -4.674 3.869 1.00 1.24 C ATOM 107 OE1 GLU 10 8.964 -4.433 3.963 1.00 1.24 O ATOM 108 OE2 GLU 10 7.288 -5.645 3.228 1.00 1.24 O ATOM 109 C GLU 10 5.286 -0.292 3.584 1.00 1.24 C ATOM 110 O GLU 10 5.975 0.657 3.973 1.00 1.24 O ATOM 111 N MET 11 4.455 -0.229 2.532 1.00 1.39 N ATOM 113 CA MET 11 4.273 0.971 1.690 1.00 1.39 C ATOM 114 CG MET 11 4.363 -0.019 -0.702 1.00 1.39 C ATOM 115 SD MET 11 5.521 1.093 -1.547 1.00 1.39 S ATOM 116 CE MET 11 4.605 1.477 -3.046 1.00 1.39 C ATOM 117 C MET 11 3.578 2.127 2.427 1.00 1.39 C ATOM 118 O MET 11 4.041 3.270 2.345 1.00 1.39 O ATOM 119 CB MET 11 3.515 0.632 0.397 1.00 1.39 C ATOM 120 N LYS 12 2.492 1.820 3.160 1.00 1.47 N ATOM 122 CA LYS 12 1.731 2.822 3.936 1.00 1.47 C ATOM 123 CB LYS 12 0.331 2.306 4.343 1.00 1.47 C ATOM 124 CG LYS 12 0.252 1.060 5.242 1.00 1.47 C ATOM 125 CD LYS 12 -1.198 0.742 5.598 1.00 1.47 C ATOM 126 CE LYS 12 -1.315 -0.422 6.579 1.00 1.47 C ATOM 127 NZ LYS 12 -0.809 -0.100 7.948 1.00 1.47 N ATOM 131 C LYS 12 2.518 3.378 5.143 1.00 1.47 C ATOM 132 O LYS 12 2.409 4.568 5.455 1.00 1.47 O ATOM 133 N LYS 13 3.293 2.502 5.802 1.00 1.47 N ATOM 135 CA LYS 13 4.143 2.849 6.961 1.00 1.47 C ATOM 136 CB LYS 13 4.642 1.586 7.676 1.00 1.47 C ATOM 137 CG LYS 13 3.600 0.899 8.551 1.00 1.47 C ATOM 138 CD LYS 13 4.180 -0.332 9.227 1.00 1.47 C ATOM 139 CE LYS 13 3.156 -1.001 10.131 1.00 1.47 C ATOM 140 NZ LYS 13 3.710 -2.218 10.788 1.00 1.47 N ATOM 144 C LYS 13 5.337 3.743 6.570 1.00 1.47 C ATOM 145 O LYS 13 5.625 4.724 7.262 1.00 1.47 O ATOM 146 N LYS 14 6.013 3.385 5.466 1.00 1.72 N ATOM 148 CA LYS 14 7.175 4.117 4.915 1.00 1.72 C ATOM 149 CB LYS 14 7.919 3.261 3.883 1.00 1.72 C ATOM 150 CG LYS 14 8.768 2.144 4.482 1.00 1.72 C ATOM 151 CD LYS 14 9.468 1.337 3.395 1.00 1.72 C ATOM 152 CE LYS 14 10.326 0.213 3.974 1.00 1.72 C ATOM 153 NZ LYS 14 9.530 -0.880 4.608 1.00 1.72 N ATOM 157 C LYS 14 6.839 5.493 4.310 1.00 1.72 C ATOM 158 O LYS 14 7.622 6.438 4.454 1.00 1.72 O ATOM 159 N PHE 15 5.678 5.586 3.643 1.00 1.91 N ATOM 161 CA PHE 15 5.177 6.816 2.990 1.00 1.91 C ATOM 162 CB PHE 15 3.976 6.476 2.064 1.00 1.91 C ATOM 163 CG PHE 15 3.788 7.422 0.872 1.00 1.91 C ATOM 164 CD1 PHE 15 4.406 7.151 -0.372 1.00 1.91 C ATOM 165 CD2 PHE 15 2.959 8.565 0.977 1.00 1.91 C ATOM 166 CE1 PHE 15 4.206 8.002 -1.495 1.00 1.91 C ATOM 167 CE2 PHE 15 2.749 9.426 -0.137 1.00 1.91 C ATOM 168 CZ PHE 15 3.374 9.143 -1.376 1.00 1.91 C ATOM 169 C PHE 15 4.783 7.922 3.994 1.00 1.91 C ATOM 170 O PHE 15 5.009 9.109 3.727 1.00 1.91 O ATOM 171 N LYS 16 4.198 7.514 5.135 1.00 1.93 N ATOM 173 CA LYS 16 3.727 8.382 6.253 1.00 1.93 C ATOM 174 CB LYS 16 4.901 9.082 6.977 1.00 1.93 C ATOM 175 CG LYS 16 5.818 8.140 7.748 1.00 1.93 C ATOM 176 CD LYS 16 6.938 8.904 8.447 1.00 1.93 C ATOM 177 CE LYS 16 7.876 7.976 9.215 1.00 1.93 C ATOM 178 NZ LYS 16 8.708 7.103 8.333 1.00 1.93 N ATOM 182 C LYS 16 2.624 9.403 5.897 1.00 1.93 C ATOM 183 O LYS 16 2.442 9.735 4.719 1.00 1.93 O ATOM 184 N ASN 17 1.902 9.887 6.920 1.00 2.98 N ATOM 186 CA ASN 17 0.801 10.859 6.774 1.00 2.98 C ATOM 187 CB ASN 17 -0.302 10.577 7.807 1.00 2.98 C ATOM 188 CG ASN 17 -1.006 9.243 7.574 1.00 2.98 C ATOM 189 OD1 ASN 17 -2.010 9.172 6.864 1.00 2.98 O ATOM 190 ND2 ASN 17 -0.489 8.183 8.191 1.00 2.98 N ATOM 193 C ASN 17 1.241 12.331 6.875 1.00 2.98 C ATOM 194 O ASN 17 2.164 12.658 7.631 1.00 2.98 O ATOM 195 N CYS 18 0.559 13.197 6.102 1.00 4.56 N ATOM 197 CA CYS 18 0.766 14.667 5.998 1.00 4.56 C ATOM 198 CB CYS 18 -0.058 15.424 7.062 1.00 4.56 C ATOM 199 SG CYS 18 0.315 14.967 8.772 1.00 4.56 S ATOM 200 C CYS 18 2.217 15.208 5.913 1.00 4.56 C ATOM 201 O CYS 18 2.767 15.299 4.809 1.00 4.56 O ATOM 202 N GLU 19 2.814 15.559 7.064 1.00 4.61 N ATOM 204 CA GLU 19 4.186 16.098 7.151 1.00 4.61 C ATOM 205 CB GLU 19 4.177 17.571 7.599 1.00 4.61 C ATOM 206 CG GLU 19 3.603 18.549 6.575 1.00 4.61 C ATOM 207 CD GLU 19 3.612 19.985 7.066 1.00 4.61 C ATOM 208 OE1 GLU 19 4.616 20.690 6.830 1.00 4.61 O ATOM 209 OE2 GLU 19 2.614 20.410 7.685 1.00 4.61 O ATOM 210 C GLU 19 5.057 15.279 8.112 1.00 4.61 C ATOM 211 O GLU 19 4.569 14.806 9.147 1.00 4.61 O ATOM 212 N VAL 20 6.337 15.105 7.746 1.00 3.96 N ATOM 214 CA VAL 20 7.340 14.357 8.534 1.00 3.96 C ATOM 215 CB VAL 20 7.966 13.144 7.721 1.00 3.96 C ATOM 216 CG1 VAL 20 8.708 12.171 8.655 1.00 3.96 C ATOM 217 CG2 VAL 20 6.883 12.387 6.950 1.00 3.96 C ATOM 218 C VAL 20 8.451 15.352 8.948 1.00 3.96 C ATOM 219 O VAL 20 8.798 16.253 8.172 1.00 3.96 O ATOM 220 N ARG 21 8.965 15.191 10.175 1.00 5.25 N ATOM 222 CA ARG 21 10.034 16.039 10.739 1.00 5.25 C ATOM 223 CB ARG 21 9.591 16.700 12.071 1.00 5.25 C ATOM 224 CG ARG 21 8.899 15.794 13.111 1.00 5.25 C ATOM 225 CD ARG 21 8.506 16.579 14.353 1.00 5.25 C ATOM 226 NE ARG 21 7.838 15.739 15.349 1.00 5.25 N ATOM 228 CZ ARG 21 7.359 16.166 16.518 1.00 5.25 C ATOM 229 NH1 ARG 21 6.772 15.305 17.338 1.00 5.25 N ATOM 232 NH2 ARG 21 7.459 17.443 16.879 1.00 5.25 N ATOM 235 C ARG 21 11.377 15.293 10.896 1.00 5.25 C ATOM 236 O ARG 21 11.417 14.198 11.475 1.00 5.25 O ATOM 237 N CYS 22 12.450 15.885 10.351 1.00 7.31 N ATOM 239 CA CYS 22 13.815 15.328 10.395 1.00 7.31 C ATOM 240 CB CYS 22 14.309 15.002 8.975 1.00 7.31 C ATOM 241 SG CYS 22 15.883 14.104 8.893 1.00 7.31 S ATOM 242 C CYS 22 14.778 16.317 11.066 1.00 7.31 C ATOM 243 O CYS 22 15.717 15.897 11.753 1.00 7.31 O ATOM 244 N ASP 23 14.523 17.624 10.871 1.00 7.47 N ATOM 246 CA ASP 23 15.308 18.774 11.403 1.00 7.47 C ATOM 247 CB ASP 23 15.154 18.907 12.943 1.00 7.47 C ATOM 248 CG ASP 23 15.271 20.352 13.437 1.00 7.47 C ATOM 249 OD1 ASP 23 14.234 21.045 13.513 1.00 7.47 O ATOM 250 OD2 ASP 23 16.399 20.784 13.762 1.00 7.47 O ATOM 251 C ASP 23 16.799 18.766 10.982 1.00 7.47 C ATOM 252 O ASP 23 17.530 17.811 11.281 1.00 7.47 O ATOM 253 N GLU 24 17.217 19.836 10.278 1.00 7.19 N ATOM 255 CA GLU 24 18.588 20.074 9.746 1.00 7.19 C ATOM 256 CB GLU 24 19.535 20.648 10.827 1.00 7.19 C ATOM 257 CG GLU 24 19.185 22.057 11.298 1.00 7.19 C ATOM 258 CD GLU 24 20.137 22.573 12.361 1.00 7.19 C ATOM 259 OE1 GLU 24 21.155 23.200 11.999 1.00 7.19 O ATOM 260 OE2 GLU 24 19.866 22.354 13.562 1.00 7.19 O ATOM 261 C GLU 24 19.254 18.896 8.994 1.00 7.19 C ATOM 262 O GLU 24 19.318 18.916 7.760 1.00 7.19 O ATOM 263 N SER 25 19.738 17.893 9.745 1.00 9.90 N ATOM 265 CA SER 25 20.389 16.685 9.204 1.00 9.90 C ATOM 266 CB SER 25 21.919 16.742 9.402 1.00 9.90 C ATOM 267 OG SER 25 22.263 16.970 10.760 1.00 9.90 O ATOM 269 C SER 25 19.795 15.424 9.860 1.00 9.90 C ATOM 270 O SER 25 19.101 14.651 9.188 1.00 9.90 O ATOM 271 N ASN 26 20.075 15.231 11.160 1.00 9.52 N ATOM 273 CA ASN 26 19.590 14.092 11.968 1.00 9.52 C ATOM 274 CB ASN 26 20.639 12.955 12.009 1.00 9.52 C ATOM 275 CG ASN 26 20.010 11.562 11.987 1.00 9.52 C ATOM 276 OD1 ASN 26 19.742 10.972 13.035 1.00 9.52 O ATOM 277 ND2 ASN 26 19.794 11.027 10.789 1.00 9.52 N ATOM 280 C ASN 26 19.312 14.618 13.390 1.00 9.52 C ATOM 281 O ASN 26 20.182 15.266 13.989 1.00 9.52 O ATOM 282 N HIS 27 18.095 14.347 13.896 1.00 8.07 N ATOM 284 CA HIS 27 17.565 14.741 15.235 1.00 8.07 C ATOM 285 CG HIS 27 18.940 12.916 16.432 1.00 8.07 C ATOM 286 CD2 HIS 27 19.739 12.846 17.524 1.00 8.07 C ATOM 287 ND1 HIS 27 19.607 12.244 15.430 1.00 8.07 N ATOM 289 CE1 HIS 27 20.757 11.788 15.894 1.00 8.07 C ATOM 290 NE2 HIS 27 20.861 12.140 17.163 1.00 8.07 N ATOM 292 C HIS 27 18.060 16.048 15.912 1.00 8.07 C ATOM 293 O HIS 27 17.283 16.997 16.059 1.00 8.07 O ATOM 294 CB HIS 27 17.588 13.545 16.233 1.00 8.07 C ATOM 295 N CYS 28 19.353 16.072 16.289 1.00 9.03 N ATOM 297 CA CYS 28 20.076 17.191 16.953 1.00 9.03 C ATOM 298 CB CYS 28 20.544 18.249 15.930 1.00 9.03 C ATOM 299 SG CYS 28 19.213 19.067 15.016 1.00 9.03 S ATOM 300 C CYS 28 19.420 17.879 18.168 1.00 9.03 C ATOM 301 O CYS 28 18.256 18.297 18.102 1.00 9.03 O ATOM 302 N VAL 29 20.181 17.970 19.269 1.00 9.07 N ATOM 304 CA VAL 29 19.752 18.598 20.537 1.00 9.07 C ATOM 305 CB VAL 29 19.875 17.614 21.774 1.00 9.07 C ATOM 306 CG1 VAL 29 18.730 16.614 21.751 1.00 9.07 C ATOM 307 CG2 VAL 29 21.225 16.860 21.781 1.00 9.07 C ATOM 308 C VAL 29 20.499 19.922 20.811 1.00 9.07 C ATOM 309 O VAL 29 21.692 20.036 20.499 1.00 9.07 O ATOM 310 N GLU 30 19.781 20.910 21.365 1.00 7.91 N ATOM 312 CA GLU 30 20.328 22.239 21.694 1.00 7.91 C ATOM 313 CB GLU 30 19.453 23.346 21.069 1.00 7.91 C ATOM 314 CG GLU 30 20.223 24.553 20.518 1.00 7.91 C ATOM 315 CD GLU 30 19.309 25.609 19.927 1.00 7.91 C ATOM 316 OE1 GLU 30 18.883 26.515 20.674 1.00 7.91 O ATOM 317 OE2 GLU 30 19.018 25.535 18.715 1.00 7.91 O ATOM 318 C GLU 30 20.430 22.424 23.224 1.00 7.91 C ATOM 319 O GLU 30 19.473 22.130 23.955 1.00 7.91 O ATOM 320 N VAL 31 21.607 22.876 23.683 1.00 10.56 N ATOM 322 CA VAL 31 21.911 23.125 25.107 1.00 10.56 C ATOM 323 CB VAL 31 23.158 22.247 25.599 1.00 10.56 C ATOM 324 CG1 VAL 31 24.466 22.629 24.874 1.00 10.56 C ATOM 325 CG2 VAL 31 23.314 22.287 27.129 1.00 10.56 C ATOM 326 C VAL 31 22.098 24.647 25.353 1.00 10.56 C ATOM 327 O VAL 31 22.657 25.348 24.500 1.00 10.56 O ATOM 328 N ARG 32 21.615 25.125 26.509 1.00 9.12 N ATOM 330 CA ARG 32 21.702 26.541 26.916 1.00 9.12 C ATOM 331 CB ARG 32 20.316 27.091 27.294 1.00 9.12 C ATOM 332 CG ARG 32 19.349 27.244 26.125 1.00 9.12 C ATOM 333 CD ARG 32 18.016 27.814 26.585 1.00 9.12 C ATOM 334 NE ARG 32 17.074 27.978 25.474 1.00 9.12 N ATOM 336 CZ ARG 32 15.853 28.502 25.575 1.00 9.12 C ATOM 337 NH1 ARG 32 15.091 28.597 24.493 1.00 9.12 N ATOM 340 NH2 ARG 32 15.381 28.935 26.741 1.00 9.12 N ATOM 343 C ARG 32 22.681 26.739 28.085 1.00 9.12 C ATOM 344 O ARG 32 22.697 25.937 29.029 1.00 9.12 O ATOM 345 N CYS 33 23.502 27.795 27.993 1.00 10.32 N ATOM 347 CA CYS 33 24.507 28.158 29.010 1.00 10.32 C ATOM 348 CB CYS 33 25.908 28.222 28.386 1.00 10.32 C ATOM 349 SG CYS 33 26.470 26.668 27.652 1.00 10.32 S ATOM 350 C CYS 33 24.167 29.507 29.660 1.00 10.32 C ATOM 351 O CYS 33 24.414 29.699 30.857 1.00 10.32 O ATOM 352 N SER 34 23.602 30.424 28.860 1.00 9.77 N ATOM 354 CA SER 34 23.203 31.775 29.294 1.00 9.77 C ATOM 355 CB SER 34 23.761 32.830 28.330 1.00 9.77 C ATOM 356 OG SER 34 25.176 32.778 28.280 1.00 9.77 O ATOM 358 C SER 34 21.674 31.906 29.380 1.00 9.77 C ATOM 359 O SER 34 20.953 31.212 28.651 1.00 9.77 O ATOM 360 N ASP 35 21.200 32.794 30.267 1.00 10.48 N ATOM 362 CA ASP 35 19.765 33.055 30.490 1.00 10.48 C ATOM 363 CB ASP 35 19.454 33.107 31.997 1.00 10.48 C ATOM 364 CG ASP 35 19.660 31.765 32.694 1.00 10.48 C ATOM 365 OD1 ASP 35 18.693 30.974 32.770 1.00 10.48 O ATOM 366 OD2 ASP 35 20.782 31.507 33.182 1.00 10.48 O ATOM 367 C ASP 35 19.296 34.356 29.819 1.00 10.48 C ATOM 368 O ASP 35 18.165 34.423 29.324 1.00 10.48 O ATOM 369 N THR 36 20.174 35.372 29.808 1.00 8.73 N ATOM 371 CA THR 36 19.906 36.697 29.211 1.00 8.73 C ATOM 372 CB THR 36 20.314 37.856 30.187 1.00 8.73 C ATOM 373 OG1 THR 36 20.236 37.389 31.540 1.00 8.73 O ATOM 375 CG2 THR 36 19.369 39.059 30.039 1.00 8.73 C ATOM 376 C THR 36 20.669 36.836 27.873 1.00 8.73 C ATOM 377 O THR 36 21.785 36.313 27.735 1.00 8.73 O ATOM 378 N LYS 37 20.040 37.512 26.900 1.00 9.60 N ATOM 380 CA LYS 37 20.606 37.752 25.558 1.00 9.60 C ATOM 381 CB LYS 37 19.678 37.199 24.463 1.00 9.60 C ATOM 382 CG LYS 37 19.579 35.678 24.418 1.00 9.60 C ATOM 383 CD LYS 37 18.640 35.217 23.309 1.00 9.60 C ATOM 384 CE LYS 37 18.524 33.694 23.246 1.00 9.60 C ATOM 385 NZ LYS 37 17.814 33.101 24.418 1.00 9.60 N ATOM 389 C LYS 37 20.855 39.248 25.316 1.00 9.60 C ATOM 390 O LYS 37 21.850 39.613 24.676 1.00 9.60 O ATOM 391 N TYR 38 19.949 40.093 25.830 1.00 8.77 N ATOM 393 CA TYR 38 20.017 41.561 25.700 1.00 8.77 C ATOM 394 CB TYR 38 18.697 42.105 25.083 1.00 8.77 C ATOM 395 CG TYR 38 18.749 43.488 24.411 1.00 8.77 C ATOM 396 CD1 TYR 38 19.032 43.619 23.029 1.00 8.77 C ATOM 397 CE1 TYR 38 19.047 44.894 22.395 1.00 8.77 C ATOM 398 CD2 TYR 38 18.481 44.670 25.145 1.00 8.77 C ATOM 399 CE2 TYR 38 18.494 45.948 24.520 1.00 8.77 C ATOM 400 CZ TYR 38 18.778 46.047 23.149 1.00 8.77 C ATOM 401 OH TYR 38 18.792 47.281 22.537 1.00 8.77 O ATOM 403 C TYR 38 20.274 42.201 27.078 1.00 8.77 C ATOM 404 O TYR 38 19.752 41.720 28.092 1.00 8.77 O ATOM 405 N THR 39 21.086 43.269 27.093 1.00 9.53 N ATOM 407 CA THR 39 21.452 44.019 28.312 1.00 9.53 C ATOM 408 CB THR 39 23.002 44.163 28.464 1.00 9.53 C ATOM 409 OG1 THR 39 23.567 44.651 27.240 1.00 9.53 O ATOM 411 CG2 THR 39 23.637 42.824 28.821 1.00 9.53 C ATOM 412 C THR 39 20.800 45.417 28.331 1.00 9.53 C ATOM 413 O THR 39 20.663 46.055 27.277 1.00 9.53 O ATOM 414 N LEU 40 20.372 45.855 29.525 1.00 8.84 N ATOM 416 CA LEU 40 19.724 47.162 29.744 1.00 8.84 C ATOM 417 CB LEU 40 18.371 46.982 30.486 1.00 8.84 C ATOM 418 CG LEU 40 17.088 46.212 30.055 1.00 8.84 C ATOM 419 CD1 LEU 40 16.387 46.853 28.843 1.00 8.84 C ATOM 420 CD2 LEU 40 17.323 44.707 29.830 1.00 8.84 C ATOM 421 C LEU 40 20.627 48.115 30.540 1.00 8.84 C ATOM 422 O LEU 40 20.610 49.328 30.300 1.00 8.84 O ATOM 423 N CYS 41 21.415 47.550 31.473 1.00 11.05 N ATOM 425 CA CYS 41 22.373 48.248 32.376 1.00 11.05 C ATOM 426 CB CYS 41 23.573 48.828 31.593 1.00 11.05 C ATOM 427 SG CYS 41 24.946 49.442 32.609 1.00 11.05 S ATOM 428 C CYS 41 21.772 49.313 33.308 1.00 11.05 C ATOM 429 O CYS 41 22.176 49.342 34.489 1.00 11.05 O ATOM 430 OXT CYS 41 20.912 50.097 32.853 1.00 11.05 O TER END