####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS257_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 1 - 20 4.27 26.48 LCS_AVERAGE: 42.42 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.78 28.69 LCS_AVERAGE: 30.58 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.94 29.13 LCS_AVERAGE: 22.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 20 3 3 4 8 13 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT Q 2 Q 2 15 17 20 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT E 3 E 3 15 17 20 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT T 4 T 4 15 17 20 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT R 5 R 5 15 17 20 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT K 6 K 6 15 17 20 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT K 7 K 7 15 17 20 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT C 8 C 8 15 17 20 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT T 9 T 9 15 17 20 6 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT E 10 E 10 15 17 20 6 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT M 11 M 11 15 17 20 6 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT K 12 K 12 15 17 20 6 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT K 13 K 13 15 17 20 4 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT K 14 K 14 15 17 20 5 11 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT F 15 F 15 15 17 20 4 11 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT K 16 K 16 15 17 20 4 10 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT N 17 N 17 4 17 20 3 4 6 8 9 14 17 17 17 17 17 18 18 18 19 19 20 20 20 20 LCS_GDT C 18 C 18 5 9 20 3 5 6 8 9 10 10 12 12 15 17 18 18 18 19 19 20 20 20 20 LCS_GDT E 19 E 19 5 9 20 3 5 5 8 9 10 10 12 12 13 15 17 18 18 19 19 20 20 20 20 LCS_GDT V 20 V 20 5 9 20 3 5 6 8 9 10 10 12 12 13 15 15 15 17 18 19 20 20 20 20 LCS_GDT R 21 R 21 5 9 17 3 5 5 8 9 10 10 12 12 13 15 15 15 16 17 17 18 19 19 20 LCS_GDT C 22 C 22 5 9 17 3 5 6 8 9 10 10 12 12 13 15 15 15 16 17 17 18 19 19 19 LCS_GDT D 23 D 23 4 9 17 3 4 6 8 9 10 10 12 12 13 15 15 15 16 17 17 18 19 19 19 LCS_GDT E 24 E 24 4 11 17 3 4 5 5 8 10 11 12 12 13 15 15 15 16 17 17 18 19 19 19 LCS_GDT S 25 S 25 4 11 17 3 4 5 5 6 10 11 12 12 13 15 15 15 16 17 17 18 19 19 19 LCS_GDT N 26 N 26 9 11 17 3 7 9 9 9 10 11 11 11 13 15 15 15 16 17 17 18 19 19 19 LCS_GDT H 27 H 27 9 11 17 4 7 9 9 9 10 11 11 11 13 14 15 15 16 17 17 18 19 19 19 LCS_GDT C 28 C 28 9 11 17 4 7 9 9 9 10 11 11 11 13 14 15 15 16 17 17 18 19 19 19 LCS_GDT V 29 V 29 9 11 17 4 6 9 9 9 10 11 11 11 13 13 13 13 13 14 15 16 17 18 18 LCS_GDT E 30 E 30 9 11 15 4 7 9 9 9 10 11 11 11 13 13 13 13 13 14 15 15 15 16 17 LCS_GDT V 31 V 31 9 11 15 3 7 9 9 9 10 11 11 11 13 13 13 13 13 14 15 15 15 16 16 LCS_GDT R 32 R 32 9 11 15 3 7 9 9 9 10 11 11 11 13 13 13 13 13 14 15 15 15 16 16 LCS_GDT C 33 C 33 9 11 15 3 7 9 9 9 10 11 11 11 13 13 13 13 13 14 15 15 15 16 16 LCS_GDT S 34 S 34 9 11 15 3 7 9 9 9 10 11 11 11 13 13 13 13 13 14 15 15 15 16 16 LCS_GDT D 35 D 35 4 10 15 3 4 4 6 9 9 9 10 11 13 13 13 13 13 14 15 15 15 16 16 LCS_GDT T 36 T 36 4 7 15 3 4 4 5 6 7 8 9 9 10 11 12 13 13 14 15 15 15 16 16 LCS_GDT K 37 K 37 5 7 15 4 5 5 5 6 7 8 8 8 9 9 10 12 12 13 15 15 15 16 16 LCS_GDT Y 38 Y 38 5 7 10 4 5 5 5 6 7 8 8 8 9 9 9 9 9 10 10 13 15 15 15 LCS_GDT T 39 T 39 5 7 10 4 5 5 5 6 7 8 8 8 9 9 9 9 9 10 10 10 10 10 10 LCS_GDT L 40 L 40 5 7 10 4 5 5 5 6 7 8 8 8 9 9 9 9 9 10 10 10 10 10 10 LCS_GDT C 41 C 41 5 5 10 3 5 5 5 6 6 8 8 8 9 9 9 9 9 10 10 10 10 10 10 LCS_AVERAGE LCS_A: 31.93 ( 22.78 30.58 42.42 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 12 15 15 15 16 17 17 17 17 17 18 18 18 19 19 20 20 20 20 GDT PERCENT_AT 17.07 29.27 36.59 36.59 36.59 39.02 41.46 41.46 41.46 41.46 41.46 43.90 43.90 43.90 46.34 46.34 48.78 48.78 48.78 48.78 GDT RMS_LOCAL 0.39 0.65 0.94 0.94 0.94 1.24 1.78 1.78 1.78 1.78 1.78 2.71 2.71 2.71 3.58 3.58 4.27 4.27 4.27 4.27 GDT RMS_ALL_AT 30.29 29.89 29.13 29.13 29.13 28.96 28.69 28.69 28.69 28.69 28.69 28.07 28.07 28.07 27.19 27.19 26.48 26.48 26.48 26.48 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.897 0 0.644 0.601 4.582 25.909 19.394 4.582 LGA Q 2 Q 2 1.914 0 0.224 1.170 7.779 61.818 30.707 7.779 LGA E 3 E 3 0.672 0 0.069 1.115 4.950 81.818 49.495 4.457 LGA T 4 T 4 0.790 0 0.033 1.299 3.576 81.818 67.273 3.576 LGA R 5 R 5 0.930 0 0.062 0.792 5.067 81.818 48.760 5.067 LGA K 6 K 6 0.593 0 0.045 0.956 3.643 81.818 59.394 3.626 LGA K 7 K 7 0.661 0 0.059 0.644 2.800 81.818 57.576 2.537 LGA C 8 C 8 1.184 0 0.050 0.692 3.001 69.545 57.879 3.001 LGA T 9 T 9 1.093 0 0.024 0.933 3.379 73.636 61.299 1.686 LGA E 10 E 10 0.492 0 0.020 0.729 3.994 90.909 62.222 3.994 LGA M 11 M 11 0.687 0 0.093 1.274 5.693 86.364 62.955 5.693 LGA K 12 K 12 2.043 0 0.049 0.848 6.563 45.000 30.909 6.563 LGA K 13 K 13 2.247 0 0.052 0.545 5.050 47.727 27.677 5.050 LGA K 14 K 14 0.887 0 0.086 0.120 2.389 78.182 61.818 2.112 LGA F 15 F 15 1.435 0 0.473 1.460 5.957 47.727 36.529 5.695 LGA K 16 K 16 1.872 0 0.676 1.262 9.945 48.182 22.626 9.945 LGA N 17 N 17 4.507 0 0.056 0.066 8.302 10.000 5.000 7.793 LGA C 18 C 18 9.699 0 0.559 0.612 11.042 0.000 0.000 10.872 LGA E 19 E 19 12.639 0 0.197 1.216 19.944 0.000 0.000 18.408 LGA V 20 V 20 13.253 0 0.134 0.260 17.051 0.000 0.000 14.154 LGA R 21 R 21 19.115 0 0.014 1.536 24.999 0.000 0.000 24.999 LGA C 22 C 22 24.264 0 0.613 0.714 26.835 0.000 0.000 24.948 LGA D 23 D 23 30.793 0 0.018 1.083 32.716 0.000 0.000 32.716 LGA E 24 E 24 36.019 0 0.039 0.760 42.112 0.000 0.000 42.112 LGA S 25 S 25 39.336 0 0.603 0.581 41.745 0.000 0.000 41.745 LGA N 26 N 26 36.278 0 0.632 0.804 37.912 0.000 0.000 35.397 LGA H 27 H 27 35.541 0 0.472 0.374 36.504 0.000 0.000 35.833 LGA C 28 C 28 36.294 0 0.075 0.106 38.882 0.000 0.000 38.882 LGA V 29 V 29 34.840 0 0.137 0.294 35.511 0.000 0.000 33.421 LGA E 30 E 30 36.257 0 0.053 1.207 37.146 0.000 0.000 35.367 LGA V 31 V 31 35.580 0 0.061 0.915 36.767 0.000 0.000 33.085 LGA R 32 R 32 36.771 0 0.231 1.006 41.326 0.000 0.000 41.326 LGA C 33 C 33 36.535 0 0.344 0.358 38.028 0.000 0.000 36.162 LGA S 34 S 34 37.253 0 0.282 0.696 39.417 0.000 0.000 34.009 LGA D 35 D 35 35.878 0 0.629 1.192 38.560 0.000 0.000 31.160 LGA T 36 T 36 39.401 0 0.635 0.795 41.560 0.000 0.000 38.063 LGA K 37 K 37 40.617 0 0.638 1.573 42.343 0.000 0.000 40.129 LGA Y 38 Y 38 46.093 0 0.037 1.371 48.944 0.000 0.000 46.904 LGA T 39 T 39 52.626 0 0.147 0.973 55.004 0.000 0.000 51.992 LGA L 40 L 40 58.031 0 0.619 1.366 61.772 0.000 0.000 56.998 LGA C 41 C 41 63.177 0 0.243 0.358 64.899 0.000 0.000 64.899 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 17.804 17.762 18.548 26.685 18.573 4.257 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.78 38.415 37.212 0.903 LGA_LOCAL RMSD: 1.782 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 28.686 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 17.804 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.316055 * X + 0.340877 * Y + 0.885388 * Z + 7.547531 Y_new = -0.948033 * X + -0.149507 * Y + -0.280857 * Z + 16.016630 Z_new = 0.036634 * X + -0.928144 * Y + 0.370415 * Z + 3.682176 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.892589 -0.036642 -1.191073 [DEG: -108.4373 -2.0994 -68.2434 ] ZXZ: 1.263623 1.191341 3.102143 [DEG: 72.4003 68.2588 177.7397 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS257_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.78 37.212 17.80 REMARK ---------------------------------------------------------- MOLECULE T0955TS257_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 CB SER 1 -3.471 -14.155 1.179 1.00 1.61 C ATOM 2 OG SER 1 -4.382 -14.829 0.326 1.00 1.61 O ATOM 4 C SER 1 -1.418 -12.717 1.322 1.00 1.61 C ATOM 5 O SER 1 -1.629 -11.522 1.556 1.00 1.61 O ATOM 8 N SER 1 -1.590 -14.516 -0.395 1.00 1.61 N ATOM 10 CA SER 1 -2.347 -13.492 0.378 1.00 1.61 C ATOM 11 N GLN 2 -0.389 -13.407 1.838 1.00 1.45 N ATOM 13 CA GLN 2 0.620 -12.854 2.770 1.00 1.45 C ATOM 14 CB GLN 2 1.415 -13.985 3.462 1.00 1.45 C ATOM 15 CG GLN 2 1.979 -15.105 2.560 1.00 1.45 C ATOM 16 CD GLN 2 2.735 -16.161 3.345 1.00 1.45 C ATOM 17 OE1 GLN 2 3.942 -16.045 3.558 1.00 1.45 O ATOM 18 NE2 GLN 2 2.026 -17.197 3.780 1.00 1.45 N ATOM 21 C GLN 2 1.573 -11.796 2.170 1.00 1.45 C ATOM 22 O GLN 2 1.918 -10.818 2.847 1.00 1.45 O ATOM 23 N GLU 3 1.957 -11.997 0.900 1.00 1.27 N ATOM 25 CA GLU 3 2.867 -11.105 0.146 1.00 1.27 C ATOM 26 CB GLU 3 3.311 -11.764 -1.167 1.00 1.27 C ATOM 27 CG GLU 3 4.233 -12.970 -0.998 1.00 1.27 C ATOM 28 CD GLU 3 4.641 -13.586 -2.323 1.00 1.27 C ATOM 29 OE1 GLU 3 5.677 -13.167 -2.882 1.00 1.27 O ATOM 30 OE2 GLU 3 3.927 -14.491 -2.805 1.00 1.27 O ATOM 31 C GLU 3 2.249 -9.724 -0.143 1.00 1.27 C ATOM 32 O GLU 3 2.919 -8.699 0.025 1.00 1.27 O ATOM 33 N THR 4 0.963 -9.720 -0.528 1.00 1.15 N ATOM 35 CA THR 4 0.185 -8.503 -0.842 1.00 1.15 C ATOM 36 CB THR 4 -1.181 -8.861 -1.518 1.00 1.15 C ATOM 37 OG1 THR 4 -1.058 -10.111 -2.209 1.00 1.15 O ATOM 39 CG2 THR 4 -1.586 -7.788 -2.540 1.00 1.15 C ATOM 40 C THR 4 -0.051 -7.680 0.447 1.00 1.15 C ATOM 41 O THR 4 0.007 -6.442 0.412 1.00 1.15 O ATOM 42 N ARG 5 -0.270 -8.384 1.571 1.00 1.08 N ATOM 44 CA ARG 5 -0.507 -7.781 2.899 1.00 1.08 C ATOM 45 CB ARG 5 -1.029 -8.830 3.891 1.00 1.08 C ATOM 46 CG ARG 5 -2.482 -9.251 3.666 1.00 1.08 C ATOM 47 CD ARG 5 -2.947 -10.291 4.685 1.00 1.08 C ATOM 48 NE ARG 5 -2.308 -11.598 4.500 1.00 1.08 N ATOM 50 CZ ARG 5 -2.529 -12.674 5.255 1.00 1.08 C ATOM 51 NH1 ARG 5 -1.886 -13.804 4.987 1.00 1.08 N ATOM 54 NH2 ARG 5 -3.382 -12.638 6.274 1.00 1.08 N ATOM 57 C ARG 5 0.730 -7.072 3.479 1.00 1.08 C ATOM 58 O ARG 5 0.620 -5.927 3.937 1.00 1.08 O ATOM 59 N LYS 6 1.895 -7.737 3.420 1.00 1.07 N ATOM 61 CA LYS 6 3.171 -7.182 3.919 1.00 1.07 C ATOM 62 CB LYS 6 4.247 -8.278 4.117 1.00 1.07 C ATOM 63 CG LYS 6 4.655 -9.120 2.897 1.00 1.07 C ATOM 64 CD LYS 6 5.768 -10.092 3.260 1.00 1.07 C ATOM 65 CE LYS 6 6.242 -10.877 2.048 1.00 1.07 C ATOM 66 NZ LYS 6 7.331 -11.832 2.393 1.00 1.07 N ATOM 70 C LYS 6 3.695 -6.007 3.068 1.00 1.07 C ATOM 71 O LYS 6 4.181 -5.015 3.618 1.00 1.07 O ATOM 72 N LYS 7 3.543 -6.123 1.740 1.00 0.98 N ATOM 74 CA LYS 7 3.967 -5.097 0.765 1.00 0.98 C ATOM 75 CB LYS 7 3.932 -5.648 -0.667 1.00 0.98 C ATOM 76 CG LYS 7 5.082 -6.586 -1.011 1.00 0.98 C ATOM 77 CD LYS 7 4.975 -7.090 -2.441 1.00 0.98 C ATOM 78 CE LYS 7 6.121 -8.029 -2.784 1.00 0.98 C ATOM 79 NZ LYS 7 6.028 -8.532 -4.183 1.00 0.98 N ATOM 83 C LYS 7 3.130 -3.808 0.858 1.00 0.98 C ATOM 84 O LYS 7 3.696 -2.708 0.844 1.00 0.98 O ATOM 85 N CYS 8 1.803 -3.960 0.998 1.00 0.96 N ATOM 87 CA CYS 8 0.854 -2.834 1.115 1.00 0.96 C ATOM 88 CB CYS 8 -0.597 -3.306 0.937 1.00 0.96 C ATOM 89 SG CYS 8 -1.238 -4.403 2.225 1.00 0.96 S ATOM 90 C CYS 8 1.017 -2.068 2.441 1.00 0.96 C ATOM 91 O CYS 8 0.976 -0.832 2.449 1.00 0.96 O ATOM 92 N THR 9 1.230 -2.815 3.537 1.00 1.05 N ATOM 94 CA THR 9 1.431 -2.260 4.893 1.00 1.05 C ATOM 95 CB THR 9 1.341 -3.359 5.991 1.00 1.05 C ATOM 96 OG1 THR 9 2.161 -4.477 5.628 1.00 1.05 O ATOM 98 CG2 THR 9 -0.099 -3.817 6.185 1.00 1.05 C ATOM 99 C THR 9 2.768 -1.499 5.017 1.00 1.05 C ATOM 100 O THR 9 2.815 -0.432 5.641 1.00 1.05 O ATOM 101 N GLU 10 3.820 -2.029 4.372 1.00 1.15 N ATOM 103 CA GLU 10 5.173 -1.435 4.364 1.00 1.15 C ATOM 104 CB GLU 10 6.208 -2.423 3.812 1.00 1.15 C ATOM 105 CG GLU 10 6.672 -3.472 4.816 1.00 1.15 C ATOM 106 CD GLU 10 7.700 -4.424 4.235 1.00 1.15 C ATOM 107 OE1 GLU 10 7.300 -5.469 3.679 1.00 1.15 O ATOM 108 OE2 GLU 10 8.910 -4.130 4.338 1.00 1.15 O ATOM 109 C GLU 10 5.236 -0.108 3.592 1.00 1.15 C ATOM 110 O GLU 10 5.810 0.864 4.095 1.00 1.15 O ATOM 111 N MET 11 4.625 -0.066 2.397 1.00 1.26 N ATOM 113 CA MET 11 4.587 1.148 1.557 1.00 1.26 C ATOM 114 CG MET 11 2.796 0.190 -0.132 1.00 1.26 C ATOM 115 SD MET 11 2.444 -0.123 -1.876 1.00 1.26 S ATOM 116 CE MET 11 1.362 1.261 -2.269 1.00 1.26 C ATOM 117 C MET 11 3.721 2.264 2.177 1.00 1.26 C ATOM 118 O MET 11 4.153 3.419 2.229 1.00 1.26 O ATOM 119 CB MET 11 4.174 0.836 0.100 1.00 1.26 C ATOM 120 N LYS 12 2.552 1.878 2.716 1.00 1.31 N ATOM 122 CA LYS 12 1.583 2.794 3.361 1.00 1.31 C ATOM 123 CB LYS 12 0.304 2.032 3.748 1.00 1.31 C ATOM 124 CG LYS 12 -1.002 2.810 3.555 1.00 1.31 C ATOM 125 CD LYS 12 -2.211 1.975 3.964 1.00 1.31 C ATOM 126 CE LYS 12 -3.524 2.733 3.787 1.00 1.31 C ATOM 127 NZ LYS 12 -3.882 2.984 2.358 1.00 1.31 N ATOM 131 C LYS 12 2.217 3.461 4.600 1.00 1.31 C ATOM 132 O LYS 12 2.032 4.664 4.818 1.00 1.31 O ATOM 133 N LYS 13 2.949 2.665 5.394 1.00 1.48 N ATOM 135 CA LYS 13 3.662 3.122 6.602 1.00 1.48 C ATOM 136 CB LYS 13 4.084 1.933 7.475 1.00 1.48 C ATOM 137 CG LYS 13 2.955 1.323 8.296 1.00 1.48 C ATOM 138 CD LYS 13 3.453 0.153 9.138 1.00 1.48 C ATOM 139 CE LYS 13 2.338 -0.475 9.970 1.00 1.48 C ATOM 140 NZ LYS 13 1.317 -1.196 9.152 1.00 1.48 N ATOM 144 C LYS 13 4.883 4.011 6.300 1.00 1.48 C ATOM 145 O LYS 13 5.127 4.984 7.024 1.00 1.48 O ATOM 146 N LYS 14 5.631 3.671 5.236 1.00 1.69 N ATOM 148 CA LYS 14 6.841 4.411 4.817 1.00 1.69 C ATOM 149 CB LYS 14 7.691 3.564 3.859 1.00 1.69 C ATOM 150 CG LYS 14 8.519 2.482 4.540 1.00 1.69 C ATOM 151 CD LYS 14 9.337 1.690 3.527 1.00 1.69 C ATOM 152 CE LYS 14 10.176 0.598 4.189 1.00 1.69 C ATOM 153 NZ LYS 14 9.361 -0.517 4.758 1.00 1.69 N ATOM 157 C LYS 14 6.643 5.823 4.232 1.00 1.69 C ATOM 158 O LYS 14 7.307 6.756 4.697 1.00 1.69 O ATOM 159 N PHE 15 5.755 5.988 3.235 1.00 1.87 N ATOM 161 CA PHE 15 5.485 7.317 2.644 1.00 1.87 C ATOM 162 CB PHE 15 4.988 7.272 1.164 1.00 1.87 C ATOM 163 CG PHE 15 3.798 6.349 0.877 1.00 1.87 C ATOM 164 CD1 PHE 15 2.510 6.588 1.421 1.00 1.87 C ATOM 165 CD2 PHE 15 3.949 5.285 -0.038 1.00 1.87 C ATOM 166 CE1 PHE 15 1.394 5.785 1.054 1.00 1.87 C ATOM 167 CE2 PHE 15 2.843 4.474 -0.416 1.00 1.87 C ATOM 168 CZ PHE 15 1.563 4.725 0.131 1.00 1.87 C ATOM 169 C PHE 15 4.661 8.299 3.502 1.00 1.87 C ATOM 170 O PHE 15 5.008 9.481 3.600 1.00 1.87 O ATOM 171 N LYS 16 3.585 7.783 4.114 1.00 1.79 N ATOM 173 CA LYS 16 2.662 8.549 4.974 1.00 1.79 C ATOM 174 CB LYS 16 1.206 8.253 4.559 1.00 1.79 C ATOM 175 CG LYS 16 0.235 9.433 4.682 1.00 1.79 C ATOM 176 CD LYS 16 -1.168 9.040 4.249 1.00 1.79 C ATOM 177 CE LYS 16 -2.132 10.208 4.373 1.00 1.79 C ATOM 178 NZ LYS 16 -3.510 9.836 3.949 1.00 1.79 N ATOM 182 C LYS 16 2.901 8.184 6.459 1.00 1.79 C ATOM 183 O LYS 16 3.731 7.316 6.754 1.00 1.79 O ATOM 184 N ASN 17 2.175 8.862 7.369 1.00 3.00 N ATOM 186 CA ASN 17 2.216 8.702 8.851 1.00 3.00 C ATOM 187 CB ASN 17 1.815 7.275 9.300 1.00 3.00 C ATOM 188 CG ASN 17 0.372 6.928 8.955 1.00 3.00 C ATOM 189 OD1 ASN 17 -0.541 7.154 9.751 1.00 3.00 O ATOM 190 ND2 ASN 17 0.164 6.361 7.769 1.00 3.00 N ATOM 193 C ASN 17 3.510 9.140 9.565 1.00 3.00 C ATOM 194 O ASN 17 3.450 9.629 10.701 1.00 3.00 O ATOM 195 N CYS 18 4.658 8.977 8.891 1.00 3.28 N ATOM 197 CA CYS 18 5.983 9.343 9.424 1.00 3.28 C ATOM 198 CB CYS 18 7.016 8.259 9.082 1.00 3.28 C ATOM 199 SG CYS 18 6.633 6.624 9.750 1.00 3.28 S ATOM 200 C CYS 18 6.463 10.720 8.927 1.00 3.28 C ATOM 201 O CYS 18 6.786 11.588 9.747 1.00 3.28 O ATOM 202 N GLU 19 6.506 10.902 7.598 1.00 4.00 N ATOM 204 CA GLU 19 6.932 12.159 6.947 1.00 4.00 C ATOM 205 CB GLU 19 8.368 12.048 6.363 1.00 4.00 C ATOM 206 CG GLU 19 8.702 10.777 5.550 1.00 4.00 C ATOM 207 CD GLU 19 10.130 10.769 5.037 1.00 4.00 C ATOM 208 OE1 GLU 19 10.363 11.267 3.916 1.00 4.00 O ATOM 209 OE2 GLU 19 11.019 10.266 5.756 1.00 4.00 O ATOM 210 C GLU 19 5.929 12.637 5.875 1.00 4.00 C ATOM 211 O GLU 19 5.544 11.859 4.993 1.00 4.00 O ATOM 212 N VAL 20 5.499 13.904 5.991 1.00 3.87 N ATOM 214 CA VAL 20 4.545 14.548 5.060 1.00 3.87 C ATOM 215 CB VAL 20 3.199 15.001 5.778 1.00 3.87 C ATOM 216 CG1 VAL 20 2.083 15.262 4.752 1.00 3.87 C ATOM 217 CG2 VAL 20 2.731 13.949 6.787 1.00 3.87 C ATOM 218 C VAL 20 5.254 15.775 4.443 1.00 3.87 C ATOM 219 O VAL 20 6.002 16.476 5.137 1.00 3.87 O ATOM 220 N ARG 21 5.034 15.994 3.138 1.00 4.31 N ATOM 222 CA ARG 21 5.618 17.117 2.382 1.00 4.31 C ATOM 223 CB ARG 21 6.563 16.593 1.279 1.00 4.31 C ATOM 224 CG ARG 21 7.792 17.474 0.993 1.00 4.31 C ATOM 225 CD ARG 21 8.679 16.890 -0.106 1.00 4.31 C ATOM 226 NE ARG 21 9.375 15.669 0.312 1.00 4.31 N ATOM 228 CZ ARG 21 10.197 14.952 -0.456 1.00 4.31 C ATOM 229 NH1 ARG 21 10.768 13.862 0.037 1.00 4.31 N ATOM 232 NH2 ARG 21 10.456 15.310 -1.710 1.00 4.31 N ATOM 235 C ARG 21 4.478 17.961 1.773 1.00 4.31 C ATOM 236 O ARG 21 3.574 17.414 1.127 1.00 4.31 O ATOM 237 N CYS 22 4.516 19.277 2.030 1.00 5.39 N ATOM 239 CA CYS 22 3.523 20.249 1.532 1.00 5.39 C ATOM 240 CB CYS 22 2.638 20.767 2.680 1.00 5.39 C ATOM 241 SG CYS 22 3.544 21.474 4.081 1.00 5.39 S ATOM 242 C CYS 22 4.210 21.427 0.823 1.00 5.39 C ATOM 243 O CYS 22 3.758 21.855 -0.245 1.00 5.39 O ATOM 244 N ASP 23 5.295 21.933 1.431 1.00 5.69 N ATOM 246 CA ASP 23 6.091 23.063 0.917 1.00 5.69 C ATOM 247 CB ASP 23 6.125 24.198 1.969 1.00 5.69 C ATOM 248 CG ASP 23 6.343 25.582 1.353 1.00 5.69 C ATOM 249 OD1 ASP 23 7.512 26.005 1.226 1.00 5.69 O ATOM 250 OD2 ASP 23 5.342 26.252 1.012 1.00 5.69 O ATOM 251 C ASP 23 7.520 22.567 0.585 1.00 5.69 C ATOM 252 O ASP 23 7.797 21.368 0.703 1.00 5.69 O ATOM 253 N GLU 24 8.401 23.494 0.175 1.00 5.90 N ATOM 255 CA GLU 24 9.807 23.212 -0.183 1.00 5.90 C ATOM 256 CB GLU 24 10.328 24.264 -1.174 1.00 5.90 C ATOM 257 CG GLU 24 9.705 24.196 -2.566 1.00 5.90 C ATOM 258 CD GLU 24 10.251 25.256 -3.506 1.00 5.90 C ATOM 259 OE1 GLU 24 11.255 24.981 -4.196 1.00 5.90 O ATOM 260 OE2 GLU 24 9.674 26.362 -3.557 1.00 5.90 O ATOM 261 C GLU 24 10.726 23.155 1.055 1.00 5.90 C ATOM 262 O GLU 24 11.805 22.548 1.004 1.00 5.90 O ATOM 263 N SER 25 10.263 23.765 2.156 1.00 6.47 N ATOM 265 CA SER 25 10.982 23.818 3.443 1.00 6.47 C ATOM 266 CB SER 25 10.903 25.229 4.038 1.00 6.47 C ATOM 267 OG SER 25 11.481 26.184 3.165 1.00 6.47 O ATOM 269 C SER 25 10.402 22.799 4.439 1.00 6.47 C ATOM 270 O SER 25 9.213 22.468 4.359 1.00 6.47 O ATOM 271 N ASN 26 11.248 22.314 5.360 1.00 4.97 N ATOM 273 CA ASN 26 10.867 21.323 6.387 1.00 4.97 C ATOM 274 CB ASN 26 11.950 20.226 6.525 1.00 4.97 C ATOM 275 CG ASN 26 13.372 20.787 6.665 1.00 4.97 C ATOM 276 OD1 ASN 26 13.852 21.028 7.774 1.00 4.97 O ATOM 277 ND2 ASN 26 14.047 20.980 5.535 1.00 4.97 N ATOM 280 C ASN 26 10.492 21.920 7.760 1.00 4.97 C ATOM 281 O ASN 26 11.261 22.705 8.331 1.00 4.97 O ATOM 282 N HIS 27 9.303 21.534 8.259 1.00 4.90 N ATOM 284 CA HIS 27 8.691 21.944 9.554 1.00 4.90 C ATOM 285 CG HIS 27 8.701 19.588 10.565 1.00 4.90 C ATOM 286 CD2 HIS 27 9.410 18.451 10.358 1.00 4.90 C ATOM 287 ND1 HIS 27 7.380 19.201 10.654 1.00 4.90 N ATOM 289 CE1 HIS 27 7.293 17.891 10.507 1.00 4.90 C ATOM 290 NE2 HIS 27 8.510 17.412 10.325 1.00 4.90 N ATOM 292 C HIS 27 8.775 23.427 9.986 1.00 4.90 C ATOM 293 O HIS 27 7.744 24.107 10.044 1.00 4.90 O ATOM 294 CB HIS 27 9.144 21.016 10.711 1.00 4.90 C ATOM 295 N CYS 28 9.994 23.905 10.281 1.00 5.35 N ATOM 297 CA CYS 28 10.258 25.288 10.715 1.00 5.35 C ATOM 298 CB CYS 28 11.031 25.297 12.042 1.00 5.35 C ATOM 299 SG CYS 28 10.174 24.486 13.412 1.00 5.35 S ATOM 300 C CYS 28 11.033 26.092 9.659 1.00 5.35 C ATOM 301 O CYS 28 11.906 25.542 8.975 1.00 5.35 O ATOM 302 N VAL 29 10.686 27.382 9.530 1.00 4.28 N ATOM 304 CA VAL 29 11.313 28.324 8.576 1.00 4.28 C ATOM 305 CB VAL 29 10.238 29.081 7.686 1.00 4.28 C ATOM 306 CG1 VAL 29 10.890 29.704 6.438 1.00 4.28 C ATOM 307 CG2 VAL 29 9.117 28.131 7.259 1.00 4.28 C ATOM 308 C VAL 29 12.146 29.341 9.393 1.00 4.28 C ATOM 309 O VAL 29 11.744 29.731 10.498 1.00 4.28 O ATOM 310 N GLU 30 13.310 29.727 8.849 1.00 4.44 N ATOM 312 CA GLU 30 14.239 30.682 9.482 1.00 4.44 C ATOM 313 CB GLU 30 15.656 30.065 9.643 1.00 4.44 C ATOM 314 CG GLU 30 16.283 29.332 8.418 1.00 4.44 C ATOM 315 CD GLU 30 16.049 27.824 8.423 1.00 4.44 C ATOM 316 OE1 GLU 30 16.870 27.096 9.019 1.00 4.44 O ATOM 317 OE2 GLU 30 15.044 27.376 7.832 1.00 4.44 O ATOM 318 C GLU 30 14.309 32.047 8.769 1.00 4.44 C ATOM 319 O GLU 30 14.292 32.105 7.532 1.00 4.44 O ATOM 320 N VAL 31 14.380 33.125 9.565 1.00 4.64 N ATOM 322 CA VAL 31 14.459 34.520 9.081 1.00 4.64 C ATOM 323 CB VAL 31 13.308 35.432 9.675 1.00 4.64 C ATOM 324 CG1 VAL 31 11.996 35.138 8.963 1.00 4.64 C ATOM 325 CG2 VAL 31 13.132 35.225 11.198 1.00 4.64 C ATOM 326 C VAL 31 15.845 35.151 9.331 1.00 4.64 C ATOM 327 O VAL 31 16.472 34.881 10.364 1.00 4.64 O ATOM 328 N ARG 32 16.311 35.966 8.372 1.00 4.88 N ATOM 330 CA ARG 32 17.614 36.655 8.436 1.00 4.88 C ATOM 331 CB ARG 32 18.444 36.379 7.171 1.00 4.88 C ATOM 332 CG ARG 32 18.934 34.935 7.029 1.00 4.88 C ATOM 333 CD ARG 32 19.740 34.721 5.748 1.00 4.88 C ATOM 334 NE ARG 32 18.916 34.794 4.538 1.00 4.88 N ATOM 336 CZ ARG 32 19.365 34.633 3.292 1.00 4.88 C ATOM 337 NH1 ARG 32 18.517 34.722 2.276 1.00 4.88 N ATOM 340 NH2 ARG 32 20.648 34.385 3.048 1.00 4.88 N ATOM 343 C ARG 32 17.452 38.171 8.632 1.00 4.88 C ATOM 344 O ARG 32 16.528 38.777 8.075 1.00 4.88 O ATOM 345 N CYS 33 18.350 38.759 9.437 1.00 5.92 N ATOM 347 CA CYS 33 18.367 40.198 9.756 1.00 5.92 C ATOM 348 CB CYS 33 18.396 40.397 11.280 1.00 5.92 C ATOM 349 SG CYS 33 16.983 39.683 12.153 1.00 5.92 S ATOM 350 C CYS 33 19.571 40.905 9.102 1.00 5.92 C ATOM 351 O CYS 33 19.696 42.136 9.181 1.00 5.92 O ATOM 352 N SER 34 20.410 40.119 8.410 1.00 7.62 N ATOM 354 CA SER 34 21.626 40.593 7.718 1.00 7.62 C ATOM 355 CB SER 34 22.636 39.442 7.594 1.00 7.62 C ATOM 356 OG SER 34 22.065 38.312 6.958 1.00 7.62 O ATOM 358 C SER 34 21.358 41.227 6.334 1.00 7.62 C ATOM 359 O SER 34 22.240 41.895 5.774 1.00 7.62 O ATOM 360 N ASP 35 20.132 41.044 5.825 1.00 6.64 N ATOM 362 CA ASP 35 19.691 41.574 4.519 1.00 6.64 C ATOM 363 CB ASP 35 18.792 40.553 3.784 1.00 6.64 C ATOM 364 CG ASP 35 17.651 40.004 4.655 1.00 6.64 C ATOM 365 OD1 ASP 35 17.853 38.966 5.321 1.00 6.64 O ATOM 366 OD2 ASP 35 16.556 40.607 4.658 1.00 6.64 O ATOM 367 C ASP 35 19.009 42.956 4.595 1.00 6.64 C ATOM 368 O ASP 35 18.315 43.251 5.576 1.00 6.64 O ATOM 369 N THR 36 19.219 43.778 3.555 1.00 8.10 N ATOM 371 CA THR 36 18.656 45.139 3.441 1.00 8.10 C ATOM 372 CB THR 36 19.716 46.155 2.907 1.00 8.10 C ATOM 373 OG1 THR 36 20.340 45.629 1.728 1.00 8.10 O ATOM 375 CG2 THR 36 20.778 46.437 3.963 1.00 8.10 C ATOM 376 C THR 36 17.404 45.181 2.543 1.00 8.10 C ATOM 377 O THR 36 16.481 45.967 2.800 1.00 8.10 O ATOM 378 N LYS 37 17.371 44.298 1.528 1.00 11.12 N ATOM 380 CA LYS 37 16.287 44.132 0.516 1.00 11.12 C ATOM 381 CB LYS 37 14.954 43.675 1.150 1.00 11.12 C ATOM 382 CG LYS 37 14.977 42.272 1.744 1.00 11.12 C ATOM 383 CD LYS 37 13.627 41.905 2.351 1.00 11.12 C ATOM 384 CE LYS 37 13.630 40.504 2.962 1.00 11.12 C ATOM 385 NZ LYS 37 13.741 39.412 1.950 1.00 11.12 N ATOM 389 C LYS 37 16.040 45.318 -0.436 1.00 11.12 C ATOM 390 O LYS 37 15.855 45.110 -1.641 1.00 11.12 O ATOM 391 N TYR 38 16.039 46.541 0.114 1.00 11.35 N ATOM 393 CA TYR 38 15.821 47.789 -0.642 1.00 11.35 C ATOM 394 CB TYR 38 14.726 48.649 0.047 1.00 11.35 C ATOM 395 CG TYR 38 14.013 49.708 -0.812 1.00 11.35 C ATOM 396 CD1 TYR 38 12.826 49.397 -1.522 1.00 11.35 C ATOM 397 CE1 TYR 38 12.147 50.382 -2.291 1.00 11.35 C ATOM 398 CD2 TYR 38 14.502 51.035 -0.891 1.00 11.35 C ATOM 399 CE2 TYR 38 13.828 52.026 -1.658 1.00 11.35 C ATOM 400 CZ TYR 38 12.655 51.689 -2.352 1.00 11.35 C ATOM 401 OH TYR 38 11.998 52.643 -3.096 1.00 11.35 O ATOM 403 C TYR 38 17.142 48.579 -0.750 1.00 11.35 C ATOM 404 O TYR 38 17.934 48.596 0.202 1.00 11.35 O ATOM 405 N THR 39 17.363 49.209 -1.914 1.00 11.52 N ATOM 407 CA THR 39 18.566 50.013 -2.210 1.00 11.52 C ATOM 408 CB THR 39 19.258 49.559 -3.538 1.00 11.52 C ATOM 409 OG1 THR 39 18.286 49.477 -4.589 1.00 11.52 O ATOM 411 CG2 THR 39 19.934 48.204 -3.360 1.00 11.52 C ATOM 412 C THR 39 18.241 51.518 -2.287 1.00 11.52 C ATOM 413 O THR 39 17.162 51.900 -2.763 1.00 11.52 O ATOM 414 N LEU 40 19.165 52.350 -1.781 1.00 9.98 N ATOM 416 CA LEU 40 19.036 53.820 -1.765 1.00 9.98 C ATOM 417 CB LEU 40 19.190 54.377 -0.321 1.00 9.98 C ATOM 418 CG LEU 40 20.275 54.005 0.722 1.00 9.98 C ATOM 419 CD1 LEU 40 20.502 55.193 1.641 1.00 9.98 C ATOM 420 CD2 LEU 40 19.908 52.755 1.540 1.00 9.98 C ATOM 421 C LEU 40 20.011 54.516 -2.734 1.00 9.98 C ATOM 422 O LEU 40 19.668 55.553 -3.317 1.00 9.98 O ATOM 423 N CYS 41 21.208 53.934 -2.892 1.00 13.04 N ATOM 425 CA CYS 41 22.271 54.449 -3.775 1.00 13.04 C ATOM 426 CB CYS 41 23.605 54.522 -3.017 1.00 13.04 C ATOM 427 SG CYS 41 23.582 55.599 -1.565 1.00 13.04 S ATOM 428 C CYS 41 22.432 53.590 -5.030 1.00 13.04 C ATOM 429 O CYS 41 22.769 54.156 -6.092 1.00 13.04 O ATOM 430 OXT CYS 41 22.207 52.364 -4.938 1.00 13.04 O TER END