####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS244_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS244_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 1 - 33 4.88 7.73 LCS_AVERAGE: 78.35 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 1.84 7.86 LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 1.61 8.58 LCS_AVERAGE: 25.52 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 3 - 15 0.58 8.40 LCS_AVERAGE: 18.56 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 33 0 3 4 5 12 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT Q 2 Q 2 3 14 33 0 3 5 10 12 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT E 3 E 3 13 14 33 10 13 13 14 15 16 17 19 22 23 25 28 31 33 34 35 36 37 38 40 LCS_GDT T 4 T 4 13 14 33 10 13 13 14 15 16 17 19 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT R 5 R 5 13 14 33 10 13 13 14 15 16 17 19 22 24 26 29 33 33 34 35 36 37 39 40 LCS_GDT K 6 K 6 13 14 33 10 13 13 14 15 16 17 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT K 7 K 7 13 14 33 10 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT C 8 C 8 13 14 33 10 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT T 9 T 9 13 14 33 10 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT E 10 E 10 13 14 33 10 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT M 11 M 11 13 14 33 10 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT K 12 K 12 13 14 33 10 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT K 13 K 13 13 14 33 8 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT K 14 K 14 13 14 33 8 13 13 14 15 16 17 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT F 15 F 15 13 14 33 6 13 13 14 15 16 17 20 22 24 25 30 33 33 34 35 36 37 39 40 LCS_GDT K 16 K 16 4 14 33 3 4 4 7 10 13 16 19 22 23 25 27 30 31 33 35 36 37 39 40 LCS_GDT N 17 N 17 4 7 33 3 4 4 6 10 12 16 19 22 23 25 27 29 31 32 35 36 37 39 40 LCS_GDT C 18 C 18 5 7 33 3 4 5 7 9 13 16 19 22 23 25 27 29 30 32 34 36 37 39 40 LCS_GDT E 19 E 19 5 7 33 3 4 6 7 8 11 15 19 22 23 25 26 28 29 31 32 34 36 38 40 LCS_GDT V 20 V 20 5 7 33 3 5 6 7 8 11 15 19 22 23 25 26 28 29 31 32 35 36 39 40 LCS_GDT R 21 R 21 5 7 33 4 5 6 7 8 11 15 18 21 23 25 26 26 29 31 32 35 36 39 40 LCS_GDT C 22 C 22 5 7 33 4 5 6 7 8 9 13 16 20 23 25 26 26 29 31 32 35 37 39 40 LCS_GDT D 23 D 23 5 9 33 4 5 6 7 11 16 17 20 22 24 25 30 33 33 34 35 36 37 39 40 LCS_GDT E 24 E 24 5 9 33 4 5 6 8 11 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT S 25 S 25 4 10 33 3 3 5 7 11 16 17 20 22 24 25 30 33 33 34 35 36 37 39 40 LCS_GDT N 26 N 26 4 10 33 3 3 5 8 11 16 19 21 22 24 25 30 33 33 34 35 36 37 39 40 LCS_GDT H 27 H 27 7 10 33 5 6 7 7 12 16 19 21 22 24 25 30 33 33 34 35 36 37 39 40 LCS_GDT C 28 C 28 7 10 33 5 6 8 13 13 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT V 29 V 29 7 10 33 5 6 7 7 12 16 19 21 22 24 25 30 33 33 34 35 36 37 39 40 LCS_GDT E 30 E 30 7 10 33 5 6 7 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT V 31 V 31 7 10 33 5 6 11 12 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT R 32 R 32 7 10 33 3 6 7 7 12 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT C 33 C 33 7 10 33 3 4 7 7 11 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT S 34 S 34 4 10 31 3 5 7 10 12 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 LCS_GDT D 35 D 35 4 10 29 3 3 7 7 10 12 14 18 21 23 26 30 33 33 34 35 36 37 39 40 LCS_GDT T 36 T 36 4 8 28 3 4 5 7 10 12 14 16 18 23 25 29 33 33 34 35 36 37 39 40 LCS_GDT K 37 K 37 5 8 28 5 5 5 6 10 12 14 16 18 23 26 30 33 33 34 35 36 37 39 40 LCS_GDT Y 38 Y 38 5 8 28 5 5 5 6 10 12 14 16 18 23 26 30 33 33 34 35 36 37 39 40 LCS_GDT T 39 T 39 5 7 28 5 5 5 7 10 12 16 17 21 23 26 30 33 33 34 35 36 37 39 40 LCS_GDT L 40 L 40 5 7 28 5 5 5 6 10 12 14 15 21 23 26 29 33 33 34 35 36 37 39 40 LCS_GDT C 41 C 41 5 7 28 5 5 5 6 10 12 14 17 21 23 26 30 33 33 34 35 36 37 39 40 LCS_AVERAGE LCS_A: 40.81 ( 18.56 25.52 78.35 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 13 13 14 15 16 19 21 22 24 26 30 33 33 34 35 36 37 39 40 GDT PERCENT_AT 24.39 31.71 31.71 34.15 36.59 39.02 46.34 51.22 53.66 58.54 63.41 73.17 80.49 80.49 82.93 85.37 87.80 90.24 95.12 97.56 GDT RMS_LOCAL 0.27 0.58 0.58 0.93 1.07 1.34 2.40 2.63 2.73 2.96 3.87 4.21 4.47 4.47 4.59 4.82 5.06 5.26 5.80 5.90 GDT RMS_ALL_AT 8.18 8.40 8.40 8.28 8.14 8.09 6.45 6.47 6.43 6.47 6.72 6.31 6.42 6.42 6.47 6.34 6.25 6.20 6.10 6.10 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.887 0 0.149 0.185 4.139 35.455 26.364 4.139 LGA Q 2 Q 2 2.183 0 0.684 1.346 4.322 23.636 13.535 4.285 LGA E 3 E 3 7.149 0 0.641 0.995 12.608 0.000 0.000 12.608 LGA T 4 T 4 6.041 0 0.030 1.056 7.584 0.000 0.260 4.658 LGA R 5 R 5 5.332 0 0.052 0.831 6.981 3.182 1.157 6.981 LGA K 6 K 6 4.115 0 0.056 1.224 10.286 13.182 6.061 10.286 LGA K 7 K 7 3.474 0 0.075 0.767 8.722 23.636 11.919 8.722 LGA C 8 C 8 2.862 0 0.021 0.034 4.046 33.636 25.152 4.046 LGA T 9 T 9 1.899 0 0.021 0.040 3.267 63.182 51.429 3.267 LGA E 10 E 10 1.049 0 0.016 0.839 3.697 69.545 47.071 3.418 LGA M 11 M 11 0.439 0 0.102 1.482 6.424 75.909 54.318 6.424 LGA K 12 K 12 2.522 0 0.068 0.616 7.009 29.091 15.960 7.009 LGA K 13 K 13 2.179 0 0.099 0.595 4.465 28.182 46.061 1.495 LGA K 14 K 14 4.059 0 0.226 0.817 5.621 6.364 5.455 4.277 LGA F 15 F 15 4.961 0 0.100 0.291 9.440 1.818 0.661 9.440 LGA K 16 K 16 9.050 0 0.687 1.319 17.793 0.000 0.000 17.793 LGA N 17 N 17 9.186 0 0.057 0.616 9.946 0.000 0.000 9.874 LGA C 18 C 18 8.833 0 0.033 0.856 10.557 0.000 0.000 9.650 LGA E 19 E 19 11.262 0 0.211 0.949 16.933 0.000 0.000 16.933 LGA V 20 V 20 10.673 0 0.101 0.099 12.567 0.000 0.000 11.725 LGA R 21 R 21 11.248 0 0.132 1.020 17.624 0.000 0.000 17.624 LGA C 22 C 22 10.064 0 0.055 0.826 13.643 0.000 0.000 13.643 LGA D 23 D 23 5.315 0 0.095 0.696 6.713 0.455 0.909 6.713 LGA E 24 E 24 3.483 0 0.050 0.577 4.083 11.364 32.121 1.856 LGA S 25 S 25 4.759 0 0.115 0.645 5.594 4.545 3.333 4.845 LGA N 26 N 26 3.170 0 0.673 0.937 7.981 29.545 16.136 7.031 LGA H 27 H 27 2.875 0 0.490 0.466 7.257 24.545 10.909 7.257 LGA C 28 C 28 1.391 0 0.109 0.143 4.930 55.909 42.121 4.930 LGA V 29 V 29 2.850 0 0.169 0.266 7.285 37.273 21.299 6.224 LGA E 30 E 30 1.286 0 0.034 0.840 9.119 53.636 25.253 6.998 LGA V 31 V 31 0.911 0 0.088 1.085 5.404 68.636 41.818 5.014 LGA R 32 R 32 2.903 0 0.220 0.955 14.908 42.727 15.537 14.908 LGA C 33 C 33 2.746 0 0.506 0.831 7.860 48.636 32.424 7.860 LGA S 34 S 34 1.824 0 0.236 0.705 5.988 25.909 35.455 2.850 LGA D 35 D 35 8.915 0 0.250 0.888 12.696 0.000 0.000 12.086 LGA T 36 T 36 11.322 0 0.611 0.483 13.897 0.000 0.000 13.482 LGA K 37 K 37 10.556 0 0.203 1.508 14.736 0.000 0.000 14.736 LGA Y 38 Y 38 9.938 0 0.070 1.121 11.019 0.000 0.000 8.558 LGA T 39 T 39 8.451 0 0.081 0.086 8.770 0.000 0.000 8.210 LGA L 40 L 40 9.631 0 0.097 0.929 14.037 0.000 0.000 10.501 LGA C 41 C 41 9.129 0 0.522 1.149 11.530 0.000 0.000 7.933 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 6.090 5.995 7.363 19.756 14.213 5.055 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 21 2.63 50.610 44.281 0.770 LGA_LOCAL RMSD: 2.628 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.467 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.090 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.511362 * X + 0.633011 * Y + 0.581211 * Z + 1.777566 Y_new = 0.366045 * X + -0.772346 * Y + 0.519127 * Z + 2.195770 Z_new = 0.777509 * X + -0.052712 * Y + -0.626659 * Z + 1.294065 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.621267 -0.890694 -3.057674 [DEG: 35.5960 -51.0330 -175.1918 ] ZXZ: 2.299832 2.248055 1.638489 [DEG: 131.7706 128.8041 93.8785 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS244_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS244_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 21 2.63 44.281 6.09 REMARK ---------------------------------------------------------- MOLECULE T0955TS244_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT 3ka5_A ATOM 1345 N SER 1 1.452 -13.588 -0.751 1.00 31.51 N ATOM 1346 CA SER 1 0.478 -12.474 -0.826 1.00 26.62 C ATOM 1347 C SER 1 0.386 -11.786 0.515 1.00 26.45 C ATOM 1348 O SER 1 0.882 -12.340 1.487 1.00 29.67 O ATOM 1349 CB SER 1 -0.893 -13.025 -1.205 1.00 28.66 C ATOM 1350 OG SER 1 -0.806 -13.712 -2.438 1.00 30.75 O ATOM 1351 N GLN 2 -0.227 -10.612 0.594 1.00 24.09 N ATOM 1352 CA GLN 2 -0.518 -9.967 1.877 1.00 24.60 C ATOM 1353 C GLN 2 -1.815 -9.180 1.742 1.00 24.09 C ATOM 1354 O GLN 2 -2.220 -8.867 0.638 1.00 22.38 O ATOM 1355 CB GLN 2 0.597 -9.004 2.323 1.00 22.27 C ATOM 1356 CG GLN 2 1.941 -9.636 2.729 1.00 25.54 C ATOM 1357 CD GLN 2 1.835 -10.619 3.894 1.00 27.13 C ATOM 1358 OE1 GLN 2 0.836 -10.686 4.593 1.00 27.54 O ATOM 1359 NE2 GLN 2 2.881 -11.356 4.132 1.00 31.59 N ATOM 1360 N GLU 3 -2.430 -8.834 2.862 1.00 25.34 N ATOM 1361 CA GLU 3 -3.649 -8.020 2.888 1.00 25.04 C ATOM 1362 C GLU 3 -3.378 -6.596 2.405 1.00 21.47 C ATOM 1363 O GLU 3 -2.250 -6.127 2.514 1.00 18.71 O ATOM 1364 CB GLU 3 -4.086 -7.878 4.347 1.00 24.94 C ATOM 1365 CG GLU 3 -4.373 -9.168 5.106 1.00 28.47 C ATOM 1366 CD GLU 3 -4.693 -8.881 6.565 1.00 26.39 C ATOM 1367 OE1 GLU 3 -4.380 -7.771 7.042 1.00 26.28 O ATOM 1368 OE2 GLU 3 -5.266 -9.736 7.270 1.00 30.82 O ATOM 1369 N THR 4 -4.394 -5.845 2.004 1.00 24.13 N ATOM 1370 CA THR 4 -4.238 -4.411 1.736 1.00 23.81 C ATOM 1371 C THR 4 -3.896 -3.631 3.009 1.00 24.55 C ATOM 1372 O THR 4 -3.076 -2.714 2.974 1.00 23.77 O ATOM 1373 CB THR 4 -5.496 -3.835 1.039 1.00 28.99 C ATOM 1374 OG1 THR 4 -5.611 -4.417 -0.265 1.00 27.54 O ATOM 1375 CG2 THR 4 -5.401 -2.344 0.807 1.00 30.38 C ATOM 1376 N ARG 5 -4.390 -4.054 4.168 1.00 25.49 N ATOM 1377 CA ARG 5 -3.930 -3.444 5.428 1.00 27.36 C ATOM 1378 C ARG 5 -2.423 -3.581 5.596 1.00 25.96 C ATOM 1379 O ARG 5 -1.709 -2.633 5.935 1.00 27.13 O ATOM 1380 CB ARG 5 -4.616 -4.088 6.632 1.00 29.39 C ATOM 1381 CG ARG 5 -6.098 -3.769 6.752 1.00 30.09 C ATOM 1382 CD ARG 5 -6.720 -4.533 7.915 1.00 30.31 C ATOM 1383 NE ARG 5 -6.754 -5.981 7.654 1.00 28.47 N ATOM 1384 CZ ARG 5 -7.721 -6.646 7.035 1.00 28.60 C ATOM 1385 NH1 ARG 5 -7.637 -7.941 6.967 1.00 30.38 N ATOM 1386 NH2 ARG 5 -8.753 -6.075 6.473 1.00 31.51 N ATOM 1387 N LYS 6 -1.921 -4.768 5.297 1.00 24.36 N ATOM 1388 CA LYS 6 -0.488 -5.028 5.390 1.00 25.91 C ATOM 1389 C LYS 6 0.281 -4.346 4.269 1.00 22.34 C ATOM 1390 O LYS 6 1.372 -3.871 4.500 1.00 23.77 O ATOM 1391 CB LYS 6 -0.229 -6.531 5.383 1.00 26.56 C ATOM 1392 CG LYS 6 -0.751 -7.235 6.630 1.00 29.53 C ATOM 1393 CD LYS 6 -0.439 -8.711 6.555 1.00 28.60 C ATOM 1394 CE LYS 6 -0.863 -9.504 7.777 1.00 31.05 C ATOM 1395 NZ LYS 6 -0.463 -10.937 7.589 1.00 31.51 N ATOM 1396 N LYS 7 -0.283 -4.242 3.075 1.00 18.66 N ATOM 1397 CA LYS 7 0.352 -3.533 1.955 1.00 16.41 C ATOM 1398 C LYS 7 0.539 -2.052 2.256 1.00 16.78 C ATOM 1399 O LYS 7 1.623 -1.523 2.048 1.00 15.84 O ATOM 1400 CB LYS 7 -0.498 -3.707 0.693 1.00 15.06 C ATOM 1401 CG LYS 7 0.047 -3.014 -0.556 1.00 14.40 C ATOM 1402 CD LYS 7 -0.641 -3.453 -1.854 1.00 14.80 C ATOM 1403 CE LYS 7 -2.151 -3.231 -1.859 1.00 16.39 C ATOM 1404 NZ LYS 7 -2.936 -4.494 -1.649 1.00 18.58 N ATOM 1405 N CYS 8 -0.472 -1.397 2.803 1.00 19.28 N ATOM 1406 CA CYS 8 -0.345 0.010 3.178 1.00 21.08 C ATOM 1407 C CYS 8 0.717 0.183 4.256 1.00 21.44 C ATOM 1408 O CYS 8 1.573 1.068 4.187 1.00 20.37 O ATOM 1409 CB CYS 8 -1.683 0.522 3.711 1.00 26.28 C ATOM 1410 SG CYS 8 -1.650 2.285 4.049 1.00 27.60 S ATOM 1411 N THR 9 0.684 -0.701 5.243 1.00 22.91 N ATOM 1412 CA THR 9 1.668 -0.668 6.318 1.00 24.55 C ATOM 1413 C THR 9 3.077 -0.895 5.768 1.00 22.15 C ATOM 1414 O THR 9 4.000 -0.170 6.111 1.00 22.34 O ATOM 1415 CB THR 9 1.323 -1.731 7.382 1.00 27.60 C ATOM 1416 OG1 THR 9 -0.014 -1.509 7.846 1.00 30.68 O ATOM 1417 CG2 THR 9 2.231 -1.658 8.588 1.00 30.98 C ATOM 1418 N GLU 10 3.245 -1.856 4.872 1.00 21.51 N ATOM 1419 CA GLU 10 4.537 -2.139 4.252 1.00 21.19 C ATOM 1420 C GLU 10 5.033 -0.939 3.455 1.00 18.20 C ATOM 1421 O GLU 10 6.200 -0.577 3.539 1.00 18.63 O ATOM 1422 CB GLU 10 4.403 -3.345 3.315 1.00 21.47 C ATOM 1423 CG GLU 10 5.702 -3.832 2.687 1.00 22.50 C ATOM 1424 CD GLU 10 6.614 -4.547 3.668 1.00 27.19 C ATOM 1425 OE1 GLU 10 6.127 -5.200 4.614 1.00 30.38 O ATOM 1426 OE2 GLU 10 7.846 -4.496 3.495 1.00 29.74 O ATOM 1427 N MET 11 4.145 -0.297 2.709 1.00 16.20 N ATOM 1428 CA MET 11 4.517 0.858 1.901 1.00 15.72 C ATOM 1429 C MET 11 5.054 1.967 2.798 1.00 18.02 C ATOM 1430 O MET 11 6.104 2.549 2.529 1.00 19.05 O ATOM 1431 CB MET 11 3.292 1.363 1.135 1.00 15.19 C ATOM 1432 CG MET 11 3.617 2.369 0.054 1.00 16.43 C ATOM 1433 SD MET 11 2.139 3.096 -0.642 1.00 16.10 S ATOM 1434 CE MET 11 1.894 4.398 0.499 1.00 18.07 C ATOM 1435 N LYS 12 4.361 2.220 3.900 1.00 19.58 N ATOM 1436 CA LYS 12 4.769 3.255 4.849 1.00 23.16 C ATOM 1437 C LYS 12 6.060 2.881 5.578 1.00 24.65 C ATOM 1438 O LYS 12 6.968 3.703 5.703 1.00 27.19 O ATOM 1439 CB LYS 12 3.607 3.504 5.817 1.00 24.50 C ATOM 1440 CG LYS 12 3.739 4.750 6.680 1.00 28.28 C ATOM 1441 CD LYS 12 2.451 4.994 7.455 1.00 27.60 C ATOM 1442 CE LYS 12 2.514 6.264 8.293 1.00 30.53 C ATOM 1443 NZ LYS 12 1.200 6.517 8.973 1.00 31.59 N ATOM 1444 N LYS 13 6.194 1.632 6.003 1.00 23.72 N ATOM 1445 CA LYS 13 7.412 1.156 6.676 1.00 26.62 C ATOM 1446 C LYS 13 8.631 1.136 5.761 1.00 25.49 C ATOM 1447 O LYS 13 9.762 1.273 6.225 1.00 30.16 O ATOM 1448 CB LYS 13 7.212 -0.252 7.249 1.00 27.66 C ATOM 1449 CG LYS 13 6.338 -0.313 8.492 1.00 28.53 C ATOM 1450 CD LYS 13 6.357 -1.713 9.101 1.00 29.95 C ATOM 1451 CE LYS 13 5.546 -1.769 10.391 1.00 30.16 C ATOM 1452 NZ LYS 13 5.609 -3.116 11.047 1.00 32.07 N ATOM 1453 N LYS 14 8.421 0.979 4.463 1.00 21.99 N ATOM 1454 CA LYS 14 9.509 1.042 3.481 1.00 23.90 C ATOM 1455 C LYS 14 9.630 2.416 2.841 1.00 24.41 C ATOM 1456 O LYS 14 10.366 2.575 1.875 1.00 28.92 O ATOM 1457 CB LYS 14 9.328 -0.044 2.410 1.00 24.36 C ATOM 1458 CG LYS 14 9.419 -1.480 2.924 1.00 25.49 C ATOM 1459 CD LYS 14 10.805 -1.819 3.460 1.00 29.06 C ATOM 1460 CE LYS 14 10.892 -3.273 3.869 1.00 30.09 C ATOM 1461 NZ LYS 14 12.226 -3.571 4.475 1.00 31.99 N ATOM 1462 N PHE 15 8.927 3.398 3.392 1.00 22.54 N ATOM 1463 CA PHE 15 8.991 4.801 2.964 1.00 25.54 C ATOM 1464 C PHE 15 8.702 5.012 1.477 1.00 26.34 C ATOM 1465 O PHE 15 9.300 5.875 0.829 1.00 30.98 O ATOM 1466 CB PHE 15 10.356 5.411 3.319 1.00 29.26 C ATOM 1467 CG PHE 15 10.755 5.215 4.754 1.00 27.30 C ATOM 1468 CD1 PHE 15 11.616 4.164 5.119 1.00 28.73 C ATOM 1469 CD2 PHE 15 10.286 6.093 5.745 1.00 29.33 C ATOM 1470 CE1 PHE 15 12.001 3.981 6.470 1.00 30.16 C ATOM 1471 CE2 PHE 15 10.673 5.931 7.095 1.00 30.53 C ATOM 1472 CZ PHE 15 11.525 4.866 7.461 1.00 30.90 C ATOM 1473 N LYS 16 7.803 4.213 0.921 1.00 23.42 N ATOM 1474 CA LYS 16 7.512 4.255 -0.509 1.00 26.28 C ATOM 1475 C LYS 16 6.273 5.092 -0.758 1.00 24.36 C ATOM 1476 O LYS 16 5.460 5.278 0.145 1.00 22.79 O ATOM 1477 CB LYS 16 7.258 2.849 -1.042 1.00 25.59 C ATOM 1478 CG LYS 16 8.410 1.886 -0.895 1.00 26.73 C ATOM 1479 CD LYS 16 8.065 0.580 -1.576 1.00 26.34 C ATOM 1480 CE LYS 16 9.180 -0.432 -1.445 1.00 28.86 C ATOM 1481 NZ LYS 16 8.889 -1.587 -2.342 1.00 30.09 N ATOM 1482 N ASN 17 6.106 5.565 -1.984 1.00 26.78 N ATOM 1483 CA ASN 17 4.924 6.348 -2.347 1.00 24.36 C ATOM 1484 C ASN 17 3.885 5.460 -3.028 1.00 24.22 C ATOM 1485 O ASN 17 2.713 5.838 -3.135 1.00 25.86 O ATOM 1486 CB ASN 17 5.317 7.513 -3.263 1.00 28.28 C ATOM 1487 CG ASN 17 6.249 8.499 -2.593 1.00 28.53 C ATOM 1488 OD1 ASN 17 6.426 8.496 -1.383 1.00 29.88 O ATOM 1489 ND2 ASN 17 6.828 9.373 -3.364 1.00 31.67 N ATOM 1490 N CYS 18 4.313 4.281 -3.462 1.00 24.32 N ATOM 1491 CA CYS 18 3.424 3.246 -3.977 1.00 22.62 C ATOM 1492 C CYS 18 4.004 1.878 -3.623 1.00 23.08 C ATOM 1493 O CYS 18 5.211 1.759 -3.403 1.00 25.80 O ATOM 1494 CB CYS 18 3.285 3.357 -5.499 1.00 27.19 C ATOM 1495 SG CYS 18 4.802 3.003 -6.407 1.00 31.75 S ATOM 1496 N GLU 19 3.166 0.853 -3.585 1.00 21.73 N ATOM 1497 CA GLU 19 3.601 -0.531 -3.388 1.00 22.62 C ATOM 1498 C GLU 19 2.666 -1.456 -4.168 1.00 21.99 C ATOM 1499 O GLU 19 1.448 -1.375 -4.022 1.00 18.97 O ATOM 1500 CB GLU 19 3.565 -0.867 -1.890 1.00 19.20 C ATOM 1501 CG GLU 19 3.792 -2.328 -1.496 1.00 20.21 C ATOM 1502 CD GLU 19 5.224 -2.836 -1.608 1.00 23.95 C ATOM 1503 OE1 GLU 19 6.120 -2.125 -2.088 1.00 25.49 O ATOM 1504 OE2 GLU 19 5.487 -3.982 -1.162 1.00 26.62 O ATOM 1505 N VAL 20 3.238 -2.341 -4.975 1.00 25.34 N ATOM 1506 CA VAL 20 2.501 -3.406 -5.665 1.00 24.04 C ATOM 1507 C VAL 20 2.709 -4.668 -4.835 1.00 25.19 C ATOM 1508 O VAL 20 3.858 -4.983 -4.521 1.00 29.95 O ATOM 1509 CB VAL 20 3.097 -3.693 -7.087 1.00 28.09 C ATOM 1510 CG1 VAL 20 2.329 -4.818 -7.813 1.00 29.88 C ATOM 1511 CG2 VAL 20 3.109 -2.439 -7.962 1.00 31.44 C ATOM 1512 N ARG 21 1.664 -5.421 -4.504 1.00 22.75 N ATOM 1513 CA ARG 21 1.824 -6.757 -3.900 1.00 24.99 C ATOM 1514 C ARG 21 0.745 -7.662 -4.457 1.00 22.91 C ATOM 1515 O ARG 21 -0.285 -7.174 -4.912 1.00 19.80 O ATOM 1516 CB ARG 21 1.684 -6.742 -2.371 1.00 22.91 C ATOM 1517 CG ARG 21 2.683 -5.864 -1.659 1.00 23.16 C ATOM 1518 CD ARG 21 2.685 -6.013 -0.145 1.00 21.62 C ATOM 1519 NE ARG 21 3.328 -7.259 0.296 1.00 24.55 N ATOM 1520 CZ ARG 21 4.630 -7.452 0.475 1.00 27.13 C ATOM 1521 NH1 ARG 21 5.030 -8.593 0.949 1.00 30.53 N ATOM 1522 NH2 ARG 21 5.558 -6.574 0.189 1.00 28.99 N ATOM 1523 N CYS 22 0.918 -8.969 -4.364 1.00 25.34 N ATOM 1524 CA CYS 22 -0.218 -9.852 -4.592 1.00 22.95 C ATOM 1525 C CYS 22 -1.075 -9.736 -3.337 1.00 20.17 C ATOM 1526 O CYS 22 -0.547 -9.719 -2.219 1.00 21.26 O ATOM 1527 CB CYS 22 0.200 -11.299 -4.840 1.00 27.60 C ATOM 1528 SG CYS 22 -1.215 -12.306 -5.373 1.00 29.33 S ATOM 1529 N ASP 23 -2.380 -9.646 -3.510 1.00 18.82 N ATOM 1530 CA ASP 23 -3.322 -9.653 -2.401 1.00 20.84 C ATOM 1531 C ASP 23 -4.010 -11.017 -2.427 1.00 23.16 C ATOM 1532 O ASP 23 -3.440 -11.970 -2.964 1.00 24.74 O ATOM 1533 CB ASP 23 -4.271 -8.456 -2.501 1.00 22.66 C ATOM 1534 CG ASP 23 -4.769 -7.983 -1.146 1.00 24.60 C ATOM 1535 OD1 ASP 23 -5.414 -8.743 -0.390 1.00 26.90 O ATOM 1536 OD2 ASP 23 -4.516 -6.808 -0.832 1.00 24.32 O ATOM 1537 N GLU 24 -5.189 -11.131 -1.836 1.00 25.19 N ATOM 1538 CA GLU 24 -5.898 -12.398 -1.669 1.00 28.60 C ATOM 1539 C GLU 24 -6.104 -13.250 -2.926 1.00 27.30 C ATOM 1540 O GLU 24 -6.119 -14.479 -2.818 1.00 31.59 O ATOM 1541 CB GLU 24 -7.228 -12.116 -0.954 1.00 29.88 C ATOM 1542 CG GLU 24 -8.235 -11.225 -1.702 1.00 27.48 C ATOM 1543 CD GLU 24 -9.449 -10.851 -0.848 1.00 28.73 C ATOM 1544 OE1 GLU 24 -9.539 -11.294 0.316 1.00 30.75 O ATOM 1545 OE2 GLU 24 -10.329 -10.084 -1.308 1.00 31.91 O ATOM 1546 N SER 25 -6.197 -12.647 -4.104 1.00 25.29 N ATOM 1547 CA SER 25 -6.214 -13.398 -5.363 1.00 27.36 C ATOM 1548 C SER 25 -5.403 -12.769 -6.494 1.00 26.18 C ATOM 1549 O SER 25 -4.962 -13.464 -7.415 1.00 30.45 O ATOM 1550 CB SER 25 -7.659 -13.529 -5.845 1.00 30.68 C ATOM 1551 OG SER 25 -8.240 -12.250 -6.046 1.00 30.38 O ATOM 1552 N ASN 26 -5.255 -11.451 -6.474 1.00 23.25 N ATOM 1553 CA ASN 26 -4.728 -10.697 -7.606 1.00 24.13 C ATOM 1554 C ASN 26 -3.708 -9.661 -7.174 1.00 23.03 C ATOM 1555 O ASN 26 -3.676 -9.250 -6.014 1.00 21.26 O ATOM 1556 CB ASN 26 -5.903 -10.002 -8.295 1.00 27.25 C ATOM 1557 CG ASN 26 -6.755 -10.963 -9.071 1.00 28.41 C ATOM 1558 OD1 ASN 26 -7.831 -11.362 -8.645 1.00 30.68 O ATOM 1559 ND2 ASN 26 -6.258 -11.389 -10.197 1.00 31.28 N ATOM 1560 N HIS 27 -2.890 -9.208 -8.111 1.00 25.29 N ATOM 1561 CA HIS 27 -1.937 -8.148 -7.818 1.00 23.33 C ATOM 1562 C HIS 27 -2.716 -6.851 -7.649 1.00 24.09 C ATOM 1563 O HIS 27 -3.552 -6.487 -8.479 1.00 28.92 O ATOM 1564 CB HIS 27 -0.882 -8.031 -8.916 1.00 27.54 C ATOM 1565 CG HIS 27 0.025 -9.219 -8.994 1.00 27.36 C ATOM 1566 ND1 HIS 27 1.126 -9.408 -8.193 1.00 27.91 N ATOM 1567 CD2 HIS 27 -0.024 -10.322 -9.790 1.00 30.53 C ATOM 1568 CE1 HIS 27 1.664 -10.587 -8.495 1.00 30.24 C ATOM 1569 NE2 HIS 27 1.010 -11.178 -9.474 1.00 30.60 N ATOM 1570 N CYS 28 -2.470 -6.184 -6.535 1.00 21.33 N ATOM 1571 CA CYS 28 -3.153 -4.946 -6.201 1.00 21.77 C ATOM 1572 C CYS 28 -2.068 -3.952 -5.822 1.00 20.01 C ATOM 1573 O CYS 28 -1.048 -4.332 -5.242 1.00 18.41 O ATOM 1574 CB CYS 28 -4.136 -5.176 -5.056 1.00 22.27 C ATOM 1575 SG CYS 28 -5.453 -6.358 -5.459 1.00 27.36 S ATOM 1576 N VAL 29 -2.278 -2.694 -6.161 1.00 21.08 N ATOM 1577 CA VAL 29 -1.271 -1.658 -5.972 1.00 20.77 C ATOM 1578 C VAL 29 -1.899 -0.673 -5.018 1.00 18.71 C ATOM 1579 O VAL 29 -3.093 -0.464 -5.101 1.00 18.60 O ATOM 1580 CB VAL 29 -0.942 -0.933 -7.305 1.00 25.59 C ATOM 1581 CG1 VAL 29 0.301 -0.039 -7.146 1.00 28.22 C ATOM 1582 CG2 VAL 29 -0.756 -1.944 -8.447 1.00 29.95 C ATOM 1583 N GLU 30 -1.147 -0.055 -4.130 1.00 17.60 N ATOM 1584 CA GLU 30 -1.703 1.003 -3.299 1.00 16.65 C ATOM 1585 C GLU 30 -0.746 2.175 -3.366 1.00 17.87 C ATOM 1586 O GLU 30 0.466 1.970 -3.462 1.00 18.31 O ATOM 1587 CB GLU 30 -1.936 0.481 -1.886 1.00 16.52 C ATOM 1588 CG GLU 30 -2.754 1.394 -0.996 1.00 19.11 C ATOM 1589 CD GLU 30 -3.209 0.683 0.264 1.00 22.42 C ATOM 1590 OE1 GLU 30 -2.626 -0.366 0.614 1.00 21.04 O ATOM 1591 OE2 GLU 30 -4.185 1.153 0.899 1.00 27.07 O ATOM 1592 N VAL 31 -1.289 3.385 -3.385 1.00 19.25 N ATOM 1593 CA VAL 31 -0.500 4.613 -3.459 1.00 22.15 C ATOM 1594 C VAL 31 -0.879 5.519 -2.293 1.00 20.98 C ATOM 1595 O VAL 31 -1.980 5.405 -1.749 1.00 19.11 O ATOM 1596 CB VAL 31 -0.728 5.373 -4.810 1.00 28.28 C ATOM 1597 CG1 VAL 31 -0.363 4.488 -6.008 1.00 30.31 C ATOM 1598 CG2 VAL 31 -2.178 5.841 -4.987 1.00 29.67 C ATOM 1599 N ARG 32 -0.003 6.443 -1.919 1.00 22.75 N ATOM 1600 CA ARG 32 -0.375 7.506 -0.977 1.00 22.42 C ATOM 1601 C ARG 32 -1.067 8.584 -1.805 1.00 25.29 C ATOM 1602 O ARG 32 -0.540 8.979 -2.850 1.00 30.38 O ATOM 1603 CB ARG 32 0.866 8.084 -0.287 1.00 25.29 C ATOM 1604 CG ARG 32 0.570 9.114 0.803 1.00 26.28 C ATOM 1605 CD ARG 32 1.867 9.748 1.272 1.00 29.33 C ATOM 1606 NE ARG 32 1.671 10.821 2.258 1.00 28.47 N ATOM 1607 CZ ARG 32 2.569 11.741 2.598 1.00 29.67 C ATOM 1608 NH1 ARG 32 2.269 12.634 3.492 1.00 31.05 N ATOM 1609 NH2 ARG 32 3.765 11.820 2.085 1.00 31.83 N ATOM 1610 N CYS 33 -2.216 9.059 -1.354 1.00 23.20 N ATOM 1611 CA CYS 33 -2.960 10.114 -2.034 1.00 25.75 C ATOM 1612 C CYS 33 -2.602 11.442 -1.358 1.00 25.59 C ATOM 1613 O CYS 33 -2.228 11.467 -0.182 1.00 25.59 O ATOM 1614 CB CYS 33 -4.458 9.819 -1.910 1.00 24.94 C ATOM 1615 SG CYS 33 -5.542 10.838 -2.933 1.00 31.13 S ATOM 1616 N SER 34 -2.722 12.547 -2.079 1.00 27.48 N ATOM 1617 CA SER 34 -2.327 13.862 -1.564 1.00 29.06 C ATOM 1618 C SER 34 -3.251 14.380 -0.466 1.00 27.13 C ATOM 1619 O SER 34 -2.856 15.225 0.339 1.00 31.75 O ATOM 1620 CB SER 34 -2.313 14.864 -2.719 1.00 31.05 C ATOM 1621 OG SER 34 -3.588 14.946 -3.330 1.00 32.07 O ATOM 1622 N ASP 35 -4.461 13.845 -0.396 1.00 24.13 N ATOM 1623 CA ASP 35 -5.463 14.225 0.608 1.00 27.07 C ATOM 1624 C ASP 35 -5.353 13.373 1.876 1.00 25.65 C ATOM 1625 O ASP 35 -6.285 13.280 2.678 1.00 29.46 O ATOM 1626 CB ASP 35 -6.881 14.122 0.027 1.00 29.12 C ATOM 1627 CG ASP 35 -7.348 12.686 -0.161 1.00 26.39 C ATOM 1628 OD1 ASP 35 -6.525 11.746 -0.130 1.00 23.12 O ATOM 1629 OD2 ASP 35 -8.565 12.494 -0.382 1.00 29.88 O ATOM 1630 N THR 36 -4.194 12.743 2.030 1.00 23.50 N ATOM 1631 CA THR 36 -3.805 11.876 3.156 1.00 24.60 C ATOM 1632 C THR 36 -4.456 10.491 3.184 1.00 25.65 C ATOM 1633 O THR 36 -4.122 9.669 4.049 1.00 29.74 O ATOM 1634 CB THR 36 -3.968 12.527 4.570 1.00 28.60 C ATOM 1635 OG1 THR 36 -4.282 13.919 4.461 1.00 30.98 O ATOM 1636 CG2 THR 36 -2.688 12.461 5.361 1.00 31.75 C ATOM 1637 N LYS 37 -5.337 10.187 2.241 1.00 24.13 N ATOM 1638 CA LYS 37 -5.872 8.830 2.105 1.00 27.13 C ATOM 1639 C LYS 37 -4.809 7.961 1.443 1.00 24.50 C ATOM 1640 O LYS 37 -3.785 8.452 0.972 1.00 20.60 O ATOM 1641 CB LYS 37 -7.143 8.827 1.248 1.00 27.13 C ATOM 1642 CG LYS 37 -8.314 9.564 1.881 1.00 28.86 C ATOM 1643 CD LYS 37 -9.510 9.543 0.947 1.00 28.86 C ATOM 1644 CE LYS 37 -10.661 10.340 1.529 1.00 30.16 C ATOM 1645 NZ LYS 37 -11.755 10.558 0.522 1.00 32.65 N ATOM 1646 N TYR 38 -5.088 6.674 1.346 1.00 26.78 N ATOM 1647 CA TYR 38 -4.316 5.774 0.501 1.00 23.68 C ATOM 1648 C TYR 38 -5.325 5.244 -0.499 1.00 25.34 C ATOM 1649 O TYR 38 -6.509 5.138 -0.159 1.00 30.68 O ATOM 1650 CB TYR 38 -3.708 4.646 1.322 1.00 25.49 C ATOM 1651 CG TYR 38 -2.687 5.144 2.321 1.00 24.13 C ATOM 1652 CD1 TYR 38 -3.053 5.426 3.652 1.00 29.12 C ATOM 1653 CD2 TYR 38 -1.343 5.322 1.943 1.00 20.30 C ATOM 1654 CE1 TYR 38 -2.085 5.851 4.598 1.00 29.46 C ATOM 1655 CE2 TYR 38 -0.375 5.770 2.886 1.00 21.84 C ATOM 1656 CZ TYR 38 -0.758 6.015 4.206 1.00 25.70 C ATOM 1657 OH TYR 38 0.174 6.429 5.122 1.00 28.15 O ATOM 1658 N THR 39 -4.898 4.973 -1.722 1.00 23.29 N ATOM 1659 CA THR 39 -5.811 4.572 -2.791 1.00 25.96 C ATOM 1660 C THR 39 -5.366 3.244 -3.377 1.00 23.68 C ATOM 1661 O THR 39 -4.223 3.114 -3.809 1.00 20.80 O ATOM 1662 CB THR 39 -5.853 5.652 -3.900 1.00 26.56 C ATOM 1663 OG1 THR 39 -6.131 6.926 -3.309 1.00 28.28 O ATOM 1664 CG2 THR 39 -6.938 5.394 -4.913 1.00 30.90 C ATOM 1665 N LEU 40 -6.260 2.264 -3.358 1.00 26.90 N ATOM 1666 CA LEU 40 -5.997 0.923 -3.873 1.00 24.36 C ATOM 1667 C LEU 40 -6.424 0.791 -5.338 1.00 25.86 C ATOM 1668 O LEU 40 -7.531 1.192 -5.708 1.00 31.05 O ATOM 1669 CB LEU 40 -6.811 -0.076 -3.040 1.00 28.22 C ATOM 1670 CG LEU 40 -6.733 -1.575 -3.360 1.00 27.13 C ATOM 1671 CD1 LEU 40 -5.369 -2.147 -3.030 1.00 23.20 C ATOM 1672 CD2 LEU 40 -7.806 -2.328 -2.588 1.00 31.67 C ATOM 1673 N CYS 41 -5.573 0.175 -6.143 1.00 23.55 N ATOM 1674 CA CYS 41 -5.860 -0.175 -7.528 1.00 27.13 C ATOM 1675 C CYS 41 -5.897 -1.693 -7.670 1.00 27.19 C ATOM 1676 O CYS 41 -4.884 -2.361 -7.378 1.00 25.96 O ATOM 1677 OXT CYS 41 -6.959 -2.217 -8.071 1.00 31.28 O ATOM 1678 CB CYS 41 -4.792 0.417 -8.451 1.00 29.60 C ATOM 1679 SG CYS 41 -4.623 2.215 -8.293 1.00 31.20 S TER END