####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS196_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS196_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.27 1.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.27 1.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 2 - 34 0.97 1.30 LCS_AVERAGE: 68.77 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 5 14 23 38 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 33 41 41 11 27 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 33 41 41 9 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 33 41 41 16 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 33 41 41 3 5 13 28 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 33 41 41 3 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 33 41 41 6 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 33 41 41 5 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 33 41 41 16 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 33 41 41 3 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 33 41 41 3 24 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 33 41 41 3 8 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 33 41 41 6 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 33 41 41 13 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 33 41 41 13 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 33 41 41 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 33 41 41 16 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 33 41 41 4 15 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 19 41 41 3 14 29 37 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 9 41 41 6 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 9 41 41 6 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 9 41 41 6 23 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 41 41 11 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 41 41 5 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 4 11 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 89.59 ( 68.77 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 41.46 70.73 85.37 92.68 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.36 0.60 0.76 0.91 1.00 1.10 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 GDT RMS_ALL_AT 1.37 1.40 1.35 1.31 1.29 1.28 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 1.27 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.006 0 0.116 0.621 6.469 6.364 6.061 5.486 LGA Q 2 Q 2 1.155 0 0.227 1.198 4.433 73.636 49.899 4.433 LGA E 3 E 3 0.948 0 0.027 1.493 6.514 81.818 44.848 5.619 LGA T 4 T 4 0.715 0 0.025 1.123 2.821 81.818 67.792 2.821 LGA R 5 R 5 0.538 0 0.016 0.333 2.202 86.364 71.240 2.077 LGA K 6 K 6 0.464 0 0.014 1.294 6.505 86.364 54.949 6.482 LGA K 7 K 7 0.544 0 0.056 0.670 2.497 81.818 65.253 1.827 LGA C 8 C 8 0.530 0 0.013 0.043 0.582 90.909 87.879 0.570 LGA T 9 T 9 0.171 0 0.019 0.103 0.324 100.000 100.000 0.135 LGA E 10 E 10 0.494 0 0.051 0.999 5.682 100.000 56.768 5.682 LGA M 11 M 11 0.287 0 0.027 0.101 0.976 100.000 90.909 0.976 LGA K 12 K 12 0.527 0 0.031 0.627 1.596 86.364 73.333 1.454 LGA K 13 K 13 0.663 0 0.024 0.616 1.748 86.364 78.788 0.454 LGA K 14 K 14 0.351 0 0.087 0.985 5.868 100.000 64.646 5.868 LGA F 15 F 15 0.673 0 0.250 0.190 1.849 73.636 71.901 1.849 LGA K 16 K 16 2.982 0 0.672 1.588 5.527 24.545 19.394 5.527 LGA N 17 N 17 1.027 0 0.363 0.586 3.114 73.636 55.000 2.114 LGA C 18 C 18 1.028 0 0.055 0.858 2.981 73.636 64.545 2.981 LGA E 19 E 19 1.001 0 0.154 0.412 2.480 77.727 64.646 1.775 LGA V 20 V 20 0.777 0 0.064 0.079 1.026 77.727 79.481 0.595 LGA R 21 R 21 1.266 0 0.099 1.106 6.477 69.545 33.058 6.477 LGA C 22 C 22 1.489 0 0.110 0.922 5.254 61.818 47.576 5.254 LGA D 23 D 23 1.702 0 0.319 1.144 4.094 42.727 35.227 2.878 LGA E 24 E 24 0.794 0 0.023 0.872 3.896 86.364 58.384 3.896 LGA S 25 S 25 0.697 0 0.086 0.671 3.121 81.818 71.212 3.121 LGA N 26 N 26 0.741 0 0.092 1.180 5.066 81.818 57.955 5.066 LGA H 27 H 27 0.476 0 0.060 0.271 1.336 90.909 80.727 1.336 LGA C 28 C 28 0.884 0 0.170 0.233 1.767 70.000 73.939 0.633 LGA V 29 V 29 0.582 0 0.030 0.049 1.262 90.909 84.675 0.822 LGA E 30 E 30 0.888 0 0.096 0.644 3.205 90.909 61.010 3.205 LGA V 31 V 31 0.461 0 0.091 0.117 0.968 90.909 87.013 0.968 LGA R 32 R 32 0.546 0 0.040 0.758 2.502 81.818 60.496 1.814 LGA C 33 C 33 0.909 0 0.469 0.524 2.722 64.091 64.545 1.081 LGA S 34 S 34 1.719 0 0.258 0.748 3.194 43.182 39.697 2.786 LGA D 35 D 35 2.524 0 0.047 1.106 4.282 45.455 31.818 4.282 LGA T 36 T 36 1.570 0 0.127 1.148 4.725 74.545 54.026 4.725 LGA K 37 K 37 1.280 0 0.102 1.459 7.593 61.818 39.596 7.593 LGA Y 38 Y 38 1.637 0 0.058 0.096 1.887 61.818 54.545 1.648 LGA T 39 T 39 0.741 0 0.113 0.125 1.190 77.727 77.143 1.185 LGA L 40 L 40 0.860 0 0.145 0.976 3.383 81.818 65.909 1.331 LGA C 41 C 41 1.650 0 0.107 0.205 2.372 51.364 51.169 1.818 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.270 1.358 2.192 74.734 60.904 38.271 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.27 90.854 95.614 2.993 LGA_LOCAL RMSD: 1.270 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.270 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.270 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.628232 * X + 0.429513 * Y + -0.648725 * Z + -4.040396 Y_new = -0.687278 * X + 0.697166 * Y + -0.203982 * Z + -11.509107 Z_new = 0.364656 * X + 0.574002 * Y + 0.733176 * Z + -0.637755 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.830253 -0.373264 0.664225 [DEG: -47.5700 -21.3864 38.0573 ] ZXZ: -1.266150 0.747815 0.565963 [DEG: -72.5450 42.8466 32.4273 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS196_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS196_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.27 95.614 1.27 REMARK ---------------------------------------------------------- MOLECULE T0955TS196_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -4.040 -11.509 -0.638 1.00 0.00 N ATOM 2 CA SER 1 -3.124 -12.511 -0.106 1.00 0.00 C ATOM 3 C SER 1 -2.168 -11.900 0.910 1.00 0.00 C ATOM 4 O SER 1 -1.997 -10.682 0.961 1.00 0.00 O ATOM 5 CB SER 1 -2.337 -13.149 -1.233 1.00 0.00 C ATOM 6 OG SER 1 -1.546 -12.201 -1.894 1.00 0.00 O ATOM 14 N GLN 2 -1.546 -12.752 1.717 1.00 0.00 N ATOM 15 CA GLN 2 -0.740 -12.293 2.841 1.00 0.00 C ATOM 16 C GLN 2 0.460 -11.485 2.364 1.00 0.00 C ATOM 17 O GLN 2 0.839 -10.491 2.985 1.00 0.00 O ATOM 18 CB GLN 2 -0.267 -13.481 3.683 1.00 0.00 C ATOM 19 CG GLN 2 -1.376 -14.179 4.452 1.00 0.00 C ATOM 20 CD GLN 2 -0.874 -15.383 5.226 1.00 0.00 C ATOM 21 OE1 GLN 2 0.157 -15.971 4.887 1.00 0.00 O ATOM 22 NE2 GLN 2 -1.602 -15.760 6.272 1.00 0.00 N ATOM 31 N GLU 3 1.056 -11.916 1.257 1.00 0.00 N ATOM 32 CA GLU 3 2.278 -11.300 0.755 1.00 0.00 C ATOM 33 C GLU 3 2.035 -9.859 0.329 1.00 0.00 C ATOM 34 O GLU 3 2.896 -8.996 0.502 1.00 0.00 O ATOM 35 CB GLU 3 2.834 -12.103 -0.423 1.00 0.00 C ATOM 36 CG GLU 3 3.358 -13.483 -0.052 1.00 0.00 C ATOM 37 CD GLU 3 4.475 -13.433 0.953 1.00 0.00 C ATOM 38 OE1 GLU 3 5.440 -12.750 0.709 1.00 0.00 O ATOM 39 OE2 GLU 3 4.362 -14.080 1.968 1.00 0.00 O ATOM 46 N THR 4 0.856 -9.602 -0.228 1.00 0.00 N ATOM 47 CA THR 4 0.463 -8.249 -0.600 1.00 0.00 C ATOM 48 C THR 4 0.235 -7.383 0.632 1.00 0.00 C ATOM 49 O THR 4 0.618 -6.213 0.661 1.00 0.00 O ATOM 50 CB THR 4 -0.810 -8.260 -1.467 1.00 0.00 C ATOM 51 OG1 THR 4 -0.586 -9.051 -2.640 1.00 0.00 O ATOM 52 CG2 THR 4 -1.187 -6.845 -1.879 1.00 0.00 C ATOM 60 N ARG 5 -0.390 -7.964 1.651 1.00 0.00 N ATOM 61 CA ARG 5 -0.623 -7.263 2.908 1.00 0.00 C ATOM 62 C ARG 5 0.691 -6.866 3.568 1.00 0.00 C ATOM 63 O ARG 5 0.800 -5.793 4.162 1.00 0.00 O ATOM 64 CB ARG 5 -1.426 -8.132 3.865 1.00 0.00 C ATOM 65 CG ARG 5 -2.879 -8.342 3.472 1.00 0.00 C ATOM 66 CD ARG 5 -3.588 -9.221 4.436 1.00 0.00 C ATOM 67 NE ARG 5 -4.968 -9.457 4.043 1.00 0.00 N ATOM 68 CZ ARG 5 -5.855 -10.176 4.758 1.00 0.00 C ATOM 69 NH1 ARG 5 -5.491 -10.723 5.897 1.00 0.00 N ATOM 70 NH2 ARG 5 -7.089 -10.333 4.313 1.00 0.00 N ATOM 84 N LYS 6 1.688 -7.738 3.462 1.00 0.00 N ATOM 85 CA LYS 6 3.024 -7.440 3.965 1.00 0.00 C ATOM 86 C LYS 6 3.611 -6.215 3.278 1.00 0.00 C ATOM 87 O LYS 6 4.160 -5.327 3.931 1.00 0.00 O ATOM 88 CB LYS 6 3.949 -8.643 3.776 1.00 0.00 C ATOM 89 CG LYS 6 3.636 -9.826 4.683 1.00 0.00 C ATOM 90 CD LYS 6 4.532 -11.015 4.370 1.00 0.00 C ATOM 91 CE LYS 6 4.099 -12.254 5.140 1.00 0.00 C ATOM 92 NZ LYS 6 4.892 -13.453 4.755 1.00 0.00 N ATOM 106 N LYS 7 3.493 -6.171 1.955 1.00 0.00 N ATOM 107 CA LYS 7 3.951 -5.023 1.182 1.00 0.00 C ATOM 108 C LYS 7 3.166 -3.767 1.541 1.00 0.00 C ATOM 109 O LYS 7 3.742 -2.695 1.722 1.00 0.00 O ATOM 110 CB LYS 7 3.834 -5.305 -0.317 1.00 0.00 C ATOM 111 CG LYS 7 4.835 -6.326 -0.844 1.00 0.00 C ATOM 112 CD LYS 7 4.592 -6.627 -2.316 1.00 0.00 C ATOM 113 CE LYS 7 5.649 -7.570 -2.870 1.00 0.00 C ATOM 114 NZ LYS 7 5.358 -7.971 -4.273 1.00 0.00 N ATOM 128 N CYS 8 1.848 -3.908 1.642 1.00 0.00 N ATOM 129 CA CYS 8 0.984 -2.788 1.991 1.00 0.00 C ATOM 130 C CYS 8 1.420 -2.141 3.299 1.00 0.00 C ATOM 131 O CYS 8 1.549 -0.919 3.386 1.00 0.00 O ATOM 132 CB CYS 8 -0.470 -3.249 2.115 1.00 0.00 C ATOM 133 SG CYS 8 -1.619 -1.941 2.606 1.00 0.00 S ATOM 139 N THR 9 1.644 -2.966 4.315 1.00 0.00 N ATOM 140 CA THR 9 2.043 -2.474 5.629 1.00 0.00 C ATOM 141 C THR 9 3.325 -1.655 5.545 1.00 0.00 C ATOM 142 O THR 9 3.414 -0.564 6.107 1.00 0.00 O ATOM 143 CB THR 9 2.235 -3.635 6.622 1.00 0.00 C ATOM 144 OG1 THR 9 0.994 -4.332 6.791 1.00 0.00 O ATOM 145 CG2 THR 9 2.707 -3.111 7.969 1.00 0.00 C ATOM 153 N GLU 10 4.316 -2.188 4.839 1.00 0.00 N ATOM 154 CA GLU 10 5.622 -1.545 4.745 1.00 0.00 C ATOM 155 C GLU 10 5.546 -0.260 3.931 1.00 0.00 C ATOM 156 O GLU 10 6.255 0.706 4.212 1.00 0.00 O ATOM 157 CB GLU 10 6.641 -2.499 4.117 1.00 0.00 C ATOM 158 CG GLU 10 7.021 -3.680 4.998 1.00 0.00 C ATOM 159 CD GLU 10 7.562 -3.263 6.337 1.00 0.00 C ATOM 160 OE1 GLU 10 8.492 -2.493 6.368 1.00 0.00 O ATOM 161 OE2 GLU 10 7.044 -3.714 7.332 1.00 0.00 O ATOM 168 N MET 11 4.682 -0.255 2.921 1.00 0.00 N ATOM 169 CA MET 11 4.449 0.939 2.118 1.00 0.00 C ATOM 170 C MET 11 3.703 2.002 2.916 1.00 0.00 C ATOM 171 O MET 11 3.920 3.199 2.728 1.00 0.00 O ATOM 172 CB MET 11 3.675 0.581 0.852 1.00 0.00 C ATOM 173 CG MET 11 4.460 -0.249 -0.153 1.00 0.00 C ATOM 174 SD MET 11 5.955 0.583 -0.725 1.00 0.00 S ATOM 175 CE MET 11 7.177 -0.118 0.380 1.00 0.00 C ATOM 185 N LYS 12 2.824 1.557 3.806 1.00 0.00 N ATOM 186 CA LYS 12 2.164 2.455 4.746 1.00 0.00 C ATOM 187 C LYS 12 3.175 3.137 5.659 1.00 0.00 C ATOM 188 O LYS 12 3.032 4.314 5.990 1.00 0.00 O ATOM 189 CB LYS 12 1.133 1.693 5.580 1.00 0.00 C ATOM 190 CG LYS 12 0.288 2.573 6.493 1.00 0.00 C ATOM 191 CD LYS 12 -0.788 1.763 7.201 1.00 0.00 C ATOM 192 CE LYS 12 -1.630 2.640 8.116 1.00 0.00 C ATOM 193 NZ LYS 12 -2.705 1.866 8.794 1.00 0.00 N ATOM 207 N LYS 13 4.198 2.391 6.063 1.00 0.00 N ATOM 208 CA LYS 13 5.303 2.955 6.828 1.00 0.00 C ATOM 209 C LYS 13 6.118 3.926 5.984 1.00 0.00 C ATOM 210 O LYS 13 6.509 4.996 6.454 1.00 0.00 O ATOM 211 CB LYS 13 6.203 1.843 7.368 1.00 0.00 C ATOM 212 CG LYS 13 5.551 0.967 8.430 1.00 0.00 C ATOM 213 CD LYS 13 6.464 -0.181 8.834 1.00 0.00 C ATOM 214 CE LYS 13 5.754 -1.153 9.765 1.00 0.00 C ATOM 215 NZ LYS 13 6.548 -2.391 9.990 1.00 0.00 N ATOM 229 N LYS 14 6.373 3.548 4.736 1.00 0.00 N ATOM 230 CA LYS 14 7.234 4.332 3.858 1.00 0.00 C ATOM 231 C LYS 14 6.619 5.691 3.553 1.00 0.00 C ATOM 232 O LYS 14 7.269 6.726 3.701 1.00 0.00 O ATOM 233 CB LYS 14 7.507 3.573 2.558 1.00 0.00 C ATOM 234 CG LYS 14 8.391 4.319 1.568 1.00 0.00 C ATOM 235 CD LYS 14 8.697 3.464 0.347 1.00 0.00 C ATOM 236 CE LYS 14 9.534 4.228 -0.667 1.00 0.00 C ATOM 237 NZ LYS 14 9.934 3.370 -1.817 1.00 0.00 N ATOM 251 N PHE 15 5.361 5.682 3.125 1.00 0.00 N ATOM 252 CA PHE 15 4.719 6.885 2.608 1.00 0.00 C ATOM 253 C PHE 15 3.978 7.632 3.711 1.00 0.00 C ATOM 254 O PHE 15 2.890 7.230 4.123 1.00 0.00 O ATOM 255 CB PHE 15 3.744 6.530 1.483 1.00 0.00 C ATOM 256 CG PHE 15 4.403 5.906 0.286 1.00 0.00 C ATOM 257 CD1 PHE 15 4.133 4.593 -0.067 1.00 0.00 C ATOM 258 CD2 PHE 15 5.294 6.632 -0.491 1.00 0.00 C ATOM 259 CE1 PHE 15 4.738 4.018 -1.168 1.00 0.00 C ATOM 260 CE2 PHE 15 5.899 6.060 -1.593 1.00 0.00 C ATOM 261 CZ PHE 15 5.621 4.752 -1.931 1.00 0.00 C ATOM 271 N LYS 16 4.575 8.720 4.185 1.00 0.00 N ATOM 272 CA LYS 16 3.984 9.512 5.256 1.00 0.00 C ATOM 273 C LYS 16 2.853 10.388 4.734 1.00 0.00 C ATOM 274 O LYS 16 2.885 10.846 3.592 1.00 0.00 O ATOM 275 CB LYS 16 5.049 10.378 5.932 1.00 0.00 C ATOM 276 CG LYS 16 6.197 9.592 6.553 1.00 0.00 C ATOM 277 CD LYS 16 5.702 8.667 7.654 1.00 0.00 C ATOM 278 CE LYS 16 6.861 8.078 8.446 1.00 0.00 C ATOM 279 NZ LYS 16 7.688 7.158 7.620 1.00 0.00 N ATOM 293 N ASN 17 1.851 10.617 5.577 1.00 0.00 N ATOM 294 CA ASN 17 0.682 11.393 5.183 1.00 0.00 C ATOM 295 C ASN 17 0.075 10.861 3.892 1.00 0.00 C ATOM 296 O ASN 17 -0.251 11.628 2.985 1.00 0.00 O ATOM 297 CB ASN 17 1.038 12.861 5.041 1.00 0.00 C ATOM 298 CG ASN 17 1.496 13.474 6.336 1.00 0.00 C ATOM 299 OD1 ASN 17 0.946 13.181 7.404 1.00 0.00 O ATOM 300 ND2 ASN 17 2.492 14.318 6.262 1.00 0.00 N ATOM 307 N CYS 18 -0.074 9.543 3.812 1.00 0.00 N ATOM 308 CA CYS 18 -0.505 8.893 2.581 1.00 0.00 C ATOM 309 C CYS 18 -1.444 7.729 2.872 1.00 0.00 C ATOM 310 O CYS 18 -1.258 6.998 3.844 1.00 0.00 O ATOM 311 CB CYS 18 0.700 8.383 1.790 1.00 0.00 C ATOM 312 SG CYS 18 0.268 7.499 0.273 1.00 0.00 S ATOM 318 N GLU 19 -2.453 7.564 2.023 1.00 0.00 N ATOM 319 CA GLU 19 -3.402 6.466 2.167 1.00 0.00 C ATOM 320 C GLU 19 -2.960 5.247 1.367 1.00 0.00 C ATOM 321 O GLU 19 -2.852 5.302 0.141 1.00 0.00 O ATOM 322 CB GLU 19 -4.797 6.904 1.716 1.00 0.00 C ATOM 323 CG GLU 19 -5.874 5.840 1.878 1.00 0.00 C ATOM 324 CD GLU 19 -7.245 6.334 1.508 1.00 0.00 C ATOM 325 OE1 GLU 19 -7.378 7.498 1.215 1.00 0.00 O ATOM 326 OE2 GLU 19 -8.161 5.545 1.517 1.00 0.00 O ATOM 333 N VAL 20 -2.703 4.147 2.067 1.00 0.00 N ATOM 334 CA VAL 20 -2.228 2.927 1.429 1.00 0.00 C ATOM 335 C VAL 20 -3.117 1.740 1.777 1.00 0.00 C ATOM 336 O VAL 20 -3.390 1.479 2.949 1.00 0.00 O ATOM 337 CB VAL 20 -0.781 2.624 1.864 1.00 0.00 C ATOM 338 CG1 VAL 20 -0.283 1.346 1.206 1.00 0.00 C ATOM 339 CG2 VAL 20 0.120 3.798 1.513 1.00 0.00 C ATOM 349 N ARG 21 -3.567 1.023 0.752 1.00 0.00 N ATOM 350 CA ARG 21 -4.510 -0.073 0.941 1.00 0.00 C ATOM 351 C ARG 21 -4.040 -1.333 0.225 1.00 0.00 C ATOM 352 O ARG 21 -3.314 -1.261 -0.768 1.00 0.00 O ATOM 353 CB ARG 21 -5.889 0.314 0.426 1.00 0.00 C ATOM 354 CG ARG 21 -6.588 1.401 1.226 1.00 0.00 C ATOM 355 CD ARG 21 -7.897 1.768 0.626 1.00 0.00 C ATOM 356 NE ARG 21 -8.554 2.832 1.369 1.00 0.00 N ATOM 357 CZ ARG 21 -9.483 2.635 2.325 1.00 0.00 C ATOM 358 NH1 ARG 21 -9.852 1.414 2.642 1.00 0.00 N ATOM 359 NH2 ARG 21 -10.023 3.671 2.945 1.00 0.00 N ATOM 373 N CYS 22 -4.456 -2.487 0.734 1.00 0.00 N ATOM 374 CA CYS 22 -4.161 -3.761 0.088 1.00 0.00 C ATOM 375 C CYS 22 -5.285 -4.177 -0.851 1.00 0.00 C ATOM 376 O CYS 22 -6.441 -4.282 -0.442 1.00 0.00 O ATOM 377 CB CYS 22 -3.945 -4.856 1.133 1.00 0.00 C ATOM 378 SG CYS 22 -3.697 -6.506 0.434 1.00 0.00 S ATOM 384 N ASP 23 -4.939 -4.412 -2.112 1.00 0.00 N ATOM 385 CA ASP 23 -5.899 -4.908 -3.090 1.00 0.00 C ATOM 386 C ASP 23 -5.885 -6.430 -3.154 1.00 0.00 C ATOM 387 O ASP 23 -5.016 -7.026 -3.789 1.00 0.00 O ATOM 388 CB ASP 23 -5.601 -4.330 -4.476 1.00 0.00 C ATOM 389 CG ASP 23 -6.569 -4.820 -5.544 1.00 0.00 C ATOM 390 OD1 ASP 23 -7.202 -5.828 -5.328 1.00 0.00 O ATOM 391 OD2 ASP 23 -6.668 -4.184 -6.565 1.00 0.00 O ATOM 396 N GLU 24 -6.853 -7.054 -2.491 1.00 0.00 N ATOM 397 CA GLU 24 -6.866 -8.504 -2.339 1.00 0.00 C ATOM 398 C GLU 24 -7.111 -9.197 -3.673 1.00 0.00 C ATOM 399 O GLU 24 -6.725 -10.350 -3.865 1.00 0.00 O ATOM 400 CB GLU 24 -7.937 -8.924 -1.330 1.00 0.00 C ATOM 401 CG GLU 24 -7.669 -8.472 0.098 1.00 0.00 C ATOM 402 CD GLU 24 -6.422 -9.078 0.679 1.00 0.00 C ATOM 403 OE1 GLU 24 -6.100 -10.185 0.319 1.00 0.00 O ATOM 404 OE2 GLU 24 -5.793 -8.435 1.485 1.00 0.00 O ATOM 411 N SER 25 -7.754 -8.486 -4.593 1.00 0.00 N ATOM 412 CA SER 25 -8.261 -9.097 -5.817 1.00 0.00 C ATOM 413 C SER 25 -7.204 -9.091 -6.913 1.00 0.00 C ATOM 414 O SER 25 -7.196 -9.958 -7.787 1.00 0.00 O ATOM 415 CB SER 25 -9.499 -8.363 -6.292 1.00 0.00 C ATOM 416 OG SER 25 -9.184 -7.064 -6.712 1.00 0.00 O ATOM 422 N ASN 26 -6.311 -8.108 -6.862 1.00 0.00 N ATOM 423 CA ASN 26 -5.221 -8.013 -7.825 1.00 0.00 C ATOM 424 C ASN 26 -3.873 -8.264 -7.158 1.00 0.00 C ATOM 425 O ASN 26 -2.833 -8.257 -7.817 1.00 0.00 O ATOM 426 CB ASN 26 -5.231 -6.660 -8.512 1.00 0.00 C ATOM 427 CG ASN 26 -6.434 -6.469 -9.394 1.00 0.00 C ATOM 428 OD1 ASN 26 -6.539 -7.080 -10.463 1.00 0.00 O ATOM 429 ND2 ASN 26 -7.345 -5.633 -8.964 1.00 0.00 N ATOM 436 N HIS 27 -3.900 -8.487 -5.849 1.00 0.00 N ATOM 437 CA HIS 27 -2.684 -8.766 -5.094 1.00 0.00 C ATOM 438 C HIS 27 -1.682 -7.626 -5.224 1.00 0.00 C ATOM 439 O HIS 27 -0.483 -7.854 -5.380 1.00 0.00 O ATOM 440 CB HIS 27 -2.040 -10.073 -5.568 1.00 0.00 C ATOM 441 CG HIS 27 -2.960 -11.254 -5.506 1.00 0.00 C ATOM 442 ND1 HIS 27 -3.296 -11.873 -4.319 1.00 0.00 N ATOM 443 CD2 HIS 27 -3.613 -11.928 -6.480 1.00 0.00 C ATOM 444 CE1 HIS 27 -4.117 -12.877 -4.568 1.00 0.00 C ATOM 445 NE2 HIS 27 -4.325 -12.932 -5.871 1.00 0.00 N ATOM 453 N CYS 28 -2.182 -6.396 -5.157 1.00 0.00 N ATOM 454 CA CYS 28 -1.341 -5.218 -5.327 1.00 0.00 C ATOM 455 C CYS 28 -1.526 -4.237 -4.176 1.00 0.00 C ATOM 456 O CYS 28 -2.445 -4.379 -3.369 1.00 0.00 O ATOM 457 CB CYS 28 -1.662 -4.513 -6.646 1.00 0.00 C ATOM 458 SG CYS 28 -1.456 -5.557 -8.110 1.00 0.00 S ATOM 464 N VAL 29 -0.647 -3.243 -4.106 1.00 0.00 N ATOM 465 CA VAL 29 -0.748 -2.203 -3.089 1.00 0.00 C ATOM 466 C VAL 29 -1.126 -0.863 -3.707 1.00 0.00 C ATOM 467 O VAL 29 -0.425 -0.350 -4.579 1.00 0.00 O ATOM 468 CB VAL 29 0.589 -2.059 -2.337 1.00 0.00 C ATOM 469 CG1 VAL 29 0.501 -0.949 -1.302 1.00 0.00 C ATOM 470 CG2 VAL 29 0.958 -3.381 -1.680 1.00 0.00 C ATOM 480 N GLU 30 -2.239 -0.299 -3.249 1.00 0.00 N ATOM 481 CA GLU 30 -2.709 0.986 -3.751 1.00 0.00 C ATOM 482 C GLU 30 -2.176 2.137 -2.908 1.00 0.00 C ATOM 483 O GLU 30 -2.379 2.176 -1.694 1.00 0.00 O ATOM 484 CB GLU 30 -4.239 1.023 -3.773 1.00 0.00 C ATOM 485 CG GLU 30 -4.829 2.313 -4.322 1.00 0.00 C ATOM 486 CD GLU 30 -6.333 2.317 -4.319 1.00 0.00 C ATOM 487 OE1 GLU 30 -6.909 1.372 -3.838 1.00 0.00 O ATOM 488 OE2 GLU 30 -6.906 3.268 -4.798 1.00 0.00 O ATOM 495 N VAL 31 -1.492 3.072 -3.558 1.00 0.00 N ATOM 496 CA VAL 31 -0.879 4.196 -2.860 1.00 0.00 C ATOM 497 C VAL 31 -1.437 5.523 -3.356 1.00 0.00 C ATOM 498 O VAL 31 -1.330 5.850 -4.538 1.00 0.00 O ATOM 499 CB VAL 31 0.649 4.179 -3.058 1.00 0.00 C ATOM 500 CG1 VAL 31 1.293 5.354 -2.336 1.00 0.00 C ATOM 501 CG2 VAL 31 1.221 2.860 -2.562 1.00 0.00 C ATOM 511 N ARG 32 -2.035 6.286 -2.447 1.00 0.00 N ATOM 512 CA ARG 32 -2.612 7.580 -2.791 1.00 0.00 C ATOM 513 C ARG 32 -1.858 8.717 -2.112 1.00 0.00 C ATOM 514 O ARG 32 -2.082 9.009 -0.937 1.00 0.00 O ATOM 515 CB ARG 32 -4.078 7.636 -2.388 1.00 0.00 C ATOM 516 CG ARG 32 -4.960 6.581 -3.037 1.00 0.00 C ATOM 517 CD ARG 32 -6.363 6.668 -2.555 1.00 0.00 C ATOM 518 NE ARG 32 -7.202 5.635 -3.142 1.00 0.00 N ATOM 519 CZ ARG 32 -8.523 5.500 -2.913 1.00 0.00 C ATOM 520 NH1 ARG 32 -9.139 6.339 -2.111 1.00 0.00 N ATOM 521 NH2 ARG 32 -9.198 4.527 -3.497 1.00 0.00 N ATOM 535 N CYS 33 -0.963 9.355 -2.858 1.00 0.00 N ATOM 536 CA CYS 33 -0.153 10.442 -2.321 1.00 0.00 C ATOM 537 C CYS 33 -0.763 11.798 -2.651 1.00 0.00 C ATOM 538 O CYS 33 -1.649 11.901 -3.501 1.00 0.00 O ATOM 539 CB CYS 33 1.269 10.379 -2.879 1.00 0.00 C ATOM 540 SG CYS 33 2.183 8.893 -2.404 1.00 0.00 S ATOM 546 N SER 34 -0.285 12.836 -1.974 1.00 0.00 N ATOM 547 CA SER 34 -0.754 14.194 -2.224 1.00 0.00 C ATOM 548 C SER 34 -0.313 14.687 -3.596 1.00 0.00 C ATOM 549 O SER 34 -0.850 15.664 -4.117 1.00 0.00 O ATOM 550 CB SER 34 -0.234 15.131 -1.150 1.00 0.00 C ATOM 551 OG SER 34 1.162 15.241 -1.212 1.00 0.00 O ATOM 557 N ASP 35 0.667 14.004 -4.177 1.00 0.00 N ATOM 558 CA ASP 35 1.226 14.408 -5.462 1.00 0.00 C ATOM 559 C ASP 35 0.594 13.630 -6.607 1.00 0.00 C ATOM 560 O ASP 35 0.323 14.184 -7.673 1.00 0.00 O ATOM 561 CB ASP 35 2.743 14.206 -5.474 1.00 0.00 C ATOM 562 CG ASP 35 3.465 15.069 -4.448 1.00 0.00 C ATOM 563 OD1 ASP 35 3.277 16.262 -4.468 1.00 0.00 O ATOM 564 OD2 ASP 35 4.196 14.527 -3.656 1.00 0.00 O ATOM 569 N THR 36 0.360 12.341 -6.383 1.00 0.00 N ATOM 570 CA THR 36 -0.084 11.446 -7.444 1.00 0.00 C ATOM 571 C THR 36 -0.547 10.109 -6.880 1.00 0.00 C ATOM 572 O THR 36 -0.082 9.675 -5.826 1.00 0.00 O ATOM 573 CB THR 36 1.035 11.212 -8.476 1.00 0.00 C ATOM 574 OG1 THR 36 0.558 10.345 -9.514 1.00 0.00 O ATOM 575 CG2 THR 36 2.249 10.582 -7.813 1.00 0.00 C ATOM 583 N LYS 37 -1.465 9.460 -7.588 1.00 0.00 N ATOM 584 CA LYS 37 -1.880 8.104 -7.245 1.00 0.00 C ATOM 585 C LYS 37 -1.192 7.076 -8.135 1.00 0.00 C ATOM 586 O LYS 37 -0.934 7.333 -9.311 1.00 0.00 O ATOM 587 CB LYS 37 -3.398 7.965 -7.356 1.00 0.00 C ATOM 588 CG LYS 37 -4.184 8.878 -6.424 1.00 0.00 C ATOM 589 CD LYS 37 -5.681 8.756 -6.664 1.00 0.00 C ATOM 590 CE LYS 37 -6.464 9.714 -5.779 1.00 0.00 C ATOM 591 NZ LYS 37 -7.917 9.705 -6.099 1.00 0.00 N ATOM 605 N TYR 38 -0.898 5.912 -7.568 1.00 0.00 N ATOM 606 CA TYR 38 -0.300 4.819 -8.326 1.00 0.00 C ATOM 607 C TYR 38 -0.478 3.488 -7.607 1.00 0.00 C ATOM 608 O TYR 38 -0.851 3.450 -6.435 1.00 0.00 O ATOM 609 CB TYR 38 1.184 5.092 -8.578 1.00 0.00 C ATOM 610 CG TYR 38 1.955 5.469 -7.333 1.00 0.00 C ATOM 611 CD1 TYR 38 2.638 4.496 -6.618 1.00 0.00 C ATOM 612 CD2 TYR 38 1.979 6.789 -6.904 1.00 0.00 C ATOM 613 CE1 TYR 38 3.343 4.840 -5.480 1.00 0.00 C ATOM 614 CE2 TYR 38 2.683 7.133 -5.767 1.00 0.00 C ATOM 615 CZ TYR 38 3.363 6.164 -5.056 1.00 0.00 C ATOM 616 OH TYR 38 4.065 6.508 -3.923 1.00 0.00 O ATOM 626 N THR 39 -0.209 2.398 -8.317 1.00 0.00 N ATOM 627 CA THR 39 -0.279 1.065 -7.730 1.00 0.00 C ATOM 628 C THR 39 1.079 0.375 -7.767 1.00 0.00 C ATOM 629 O THR 39 1.773 0.403 -8.783 1.00 0.00 O ATOM 630 CB THR 39 -1.322 0.194 -8.456 1.00 0.00 C ATOM 631 OG1 THR 39 -2.615 0.802 -8.347 1.00 0.00 O ATOM 632 CG2 THR 39 -1.368 -1.199 -7.848 1.00 0.00 C ATOM 640 N LEU 40 1.452 -0.245 -6.653 1.00 0.00 N ATOM 641 CA LEU 40 2.717 -0.964 -6.563 1.00 0.00 C ATOM 642 C LEU 40 2.496 -2.471 -6.564 1.00 0.00 C ATOM 643 O LEU 40 1.524 -2.966 -5.993 1.00 0.00 O ATOM 644 CB LEU 40 3.470 -0.552 -5.292 1.00 0.00 C ATOM 645 CG LEU 40 3.799 0.941 -5.167 1.00 0.00 C ATOM 646 CD1 LEU 40 4.469 1.204 -3.826 1.00 0.00 C ATOM 647 CD2 LEU 40 4.698 1.362 -6.320 1.00 0.00 C ATOM 659 N CYS 41 3.403 -3.196 -7.208 1.00 0.00 N ATOM 660 CA CYS 41 3.308 -4.649 -7.287 1.00 0.00 C ATOM 661 C CYS 41 4.560 -5.316 -6.731 1.00 0.00 C ATOM 662 O CYS 41 4.698 -5.437 -5.546 1.00 0.00 O ATOM 663 OXT CYS 41 5.407 -5.717 -7.479 1.00 0.00 O ATOM 664 CB CYS 41 3.097 -5.097 -8.734 1.00 0.00 C ATOM 665 SG CYS 41 1.609 -4.419 -9.508 1.00 0.00 S TER END