####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS192_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS192_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 3.27 3.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 7 - 41 1.85 3.95 LCS_AVERAGE: 81.68 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 2 - 20 0.88 5.11 LCS_AVERAGE: 42.47 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 22 41 3 3 4 7 12 24 25 28 28 30 32 35 39 40 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 19 22 41 9 13 19 21 23 24 26 29 31 36 39 40 40 40 41 41 41 41 41 41 LCS_GDT E 3 E 3 19 22 41 9 14 19 21 23 24 28 31 34 37 39 40 40 40 41 41 41 41 41 41 LCS_GDT T 4 T 4 19 22 41 9 15 19 21 23 24 28 31 35 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT R 5 R 5 19 30 41 9 15 19 21 23 26 32 34 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT K 6 K 6 19 30 41 9 15 19 21 26 31 33 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT K 7 K 7 19 35 41 9 15 19 21 26 31 33 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT C 8 C 8 19 35 41 9 15 19 23 29 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT T 9 T 9 19 35 41 9 15 19 27 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT E 10 E 10 19 35 41 9 15 19 27 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT M 11 M 11 19 35 41 9 15 19 27 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT K 12 K 12 19 35 41 9 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT K 13 K 13 19 35 41 9 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT K 14 K 14 19 35 41 9 15 20 27 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT F 15 F 15 19 35 41 9 15 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT K 16 K 16 19 35 41 8 15 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT N 17 N 17 19 35 41 5 15 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT C 18 C 18 19 35 41 5 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT E 19 E 19 19 35 41 9 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT V 20 V 20 19 35 41 4 14 23 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT R 21 R 21 17 35 41 4 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT C 22 C 22 17 35 41 4 14 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT D 23 D 23 17 35 41 4 14 23 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT E 24 E 24 17 35 41 4 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT S 25 S 25 17 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT N 26 N 26 17 35 41 4 14 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT H 27 H 27 17 35 41 5 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT C 28 C 28 17 35 41 6 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT V 29 V 29 17 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT E 30 E 30 17 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT V 31 V 31 17 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT R 32 R 32 17 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT C 33 C 33 17 35 41 5 12 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT S 34 S 34 17 35 41 6 14 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT D 35 D 35 16 35 41 3 6 20 29 30 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT T 36 T 36 16 35 41 5 7 19 29 30 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT K 37 K 37 16 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 16 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT T 39 T 39 16 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT L 40 L 40 16 35 41 7 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_GDT C 41 C 41 16 35 41 5 6 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 74.72 ( 42.47 81.68 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 16 25 29 31 33 34 36 37 38 39 40 40 40 41 41 41 41 41 41 GDT PERCENT_AT 21.95 39.02 60.98 70.73 75.61 80.49 82.93 87.80 90.24 92.68 95.12 97.56 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.69 1.04 1.25 1.41 1.57 1.65 2.03 2.22 2.44 2.69 2.93 2.93 2.93 3.27 3.27 3.27 3.27 3.27 3.27 GDT RMS_ALL_AT 5.83 4.29 4.41 4.58 4.06 4.20 4.11 3.78 3.65 3.52 3.39 3.31 3.31 3.31 3.27 3.27 3.27 3.27 3.27 3.27 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 13.025 0 0.037 0.723 15.223 0.000 0.000 11.911 LGA Q 2 Q 2 9.980 0 0.188 0.955 11.117 0.000 0.000 9.331 LGA E 3 E 3 8.946 0 0.048 0.930 11.222 0.000 0.000 10.968 LGA T 4 T 4 7.247 0 0.024 1.113 8.094 0.000 0.000 7.187 LGA R 5 R 5 6.064 0 0.024 0.237 12.066 1.364 0.496 12.066 LGA K 6 K 6 5.106 0 0.027 1.230 12.435 4.091 1.818 12.435 LGA K 7 K 7 4.542 0 0.035 0.655 9.337 8.182 3.636 9.337 LGA C 8 C 8 2.665 0 0.034 0.778 3.505 38.636 37.273 1.700 LGA T 9 T 9 2.007 0 0.021 0.097 3.452 55.909 43.896 3.452 LGA E 10 E 10 1.795 0 0.029 0.517 4.156 50.909 32.929 3.914 LGA M 11 M 11 1.675 0 0.017 0.110 3.331 58.182 43.409 3.331 LGA K 12 K 12 0.436 0 0.034 0.658 1.909 82.273 74.949 1.437 LGA K 13 K 13 1.011 0 0.041 0.581 2.423 59.091 63.232 1.371 LGA K 14 K 14 2.668 0 0.021 1.036 4.860 30.909 21.212 4.860 LGA F 15 F 15 1.933 0 0.079 0.169 3.381 51.364 42.149 3.381 LGA K 16 K 16 2.686 0 0.035 1.227 7.046 30.000 17.576 7.040 LGA N 17 N 17 2.569 0 0.203 0.463 3.264 30.000 26.364 3.018 LGA C 18 C 18 1.126 0 0.016 0.029 1.512 65.909 68.485 1.327 LGA E 19 E 19 0.880 0 0.227 0.499 3.629 86.364 59.798 2.425 LGA V 20 V 20 0.954 0 0.168 1.094 2.742 77.727 63.117 2.109 LGA R 21 R 21 0.844 0 0.088 1.432 7.643 81.818 41.818 6.710 LGA C 22 C 22 1.684 0 0.160 0.193 2.415 51.364 46.970 2.415 LGA D 23 D 23 2.076 0 0.404 1.213 4.591 31.364 26.364 3.131 LGA E 24 E 24 1.119 0 0.038 0.949 5.590 65.455 39.596 5.590 LGA S 25 S 25 1.447 0 0.123 0.695 3.044 65.455 55.152 3.044 LGA N 26 N 26 1.723 0 0.074 1.184 5.248 50.909 36.364 5.248 LGA H 27 H 27 1.320 0 0.076 0.278 2.091 65.455 58.364 1.844 LGA C 28 C 28 0.742 0 0.140 0.177 1.219 77.727 82.121 0.311 LGA V 29 V 29 0.912 0 0.063 0.094 1.441 73.636 70.130 1.013 LGA E 30 E 30 0.606 0 0.076 0.662 3.593 90.909 69.091 1.066 LGA V 31 V 31 0.655 0 0.118 0.153 1.314 81.818 74.805 1.314 LGA R 32 R 32 0.616 0 0.117 1.037 8.705 74.545 39.174 8.705 LGA C 33 C 33 1.397 0 0.545 0.990 3.920 52.273 47.879 2.859 LGA S 34 S 34 1.318 0 0.284 0.587 2.599 52.273 50.303 2.599 LGA D 35 D 35 3.226 0 0.204 0.950 7.859 24.545 12.955 7.859 LGA T 36 T 36 3.361 0 0.129 1.003 5.823 33.636 23.377 3.007 LGA K 37 K 37 1.433 0 0.107 1.479 7.212 58.636 40.202 7.212 LGA Y 38 Y 38 1.107 0 0.015 1.068 7.781 65.455 31.667 7.781 LGA T 39 T 39 1.336 0 0.060 0.088 1.923 61.818 57.143 1.671 LGA L 40 L 40 1.269 0 0.058 0.951 2.244 58.182 56.591 2.244 LGA C 41 C 41 2.244 0 0.135 0.812 3.933 29.545 29.610 2.519 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 3.269 3.290 4.004 48.237 38.781 24.878 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 36 2.03 74.390 80.015 1.691 LGA_LOCAL RMSD: 2.029 Number of atoms: 36 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.783 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 3.269 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.473742 * X + 0.170222 * Y + -0.864056 * Z + 23.743364 Y_new = -0.766081 * X + -0.404288 * Y + -0.499671 * Z + 78.552788 Z_new = -0.434382 * X + 0.898652 * Y + -0.061125 * Z + 23.877426 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.016960 0.449352 1.638710 [DEG: -58.2675 25.7460 93.8912 ] ZXZ: -1.046497 1.631959 -0.450256 [DEG: -59.9599 93.5044 -25.7978 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS192_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS192_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 36 2.03 80.015 3.27 REMARK ---------------------------------------------------------- MOLECULE T0955TS192_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT 2fn0_A 3g0t_A ATOM 1 N SER 1 -9.380 -8.244 7.143 1.00 0.00 N ATOM 2 CA SER 1 -8.397 -9.210 7.624 1.00 0.00 C ATOM 3 C SER 1 -7.136 -8.556 8.159 1.00 0.00 C ATOM 4 O SER 1 -6.645 -7.571 7.605 1.00 0.00 O ATOM 5 CB SER 1 -7.995 -10.176 6.530 1.00 0.00 C ATOM 6 OG SER 1 -6.967 -11.022 6.979 1.00 0.00 O ATOM 14 N GLN 2 -6.609 -9.138 9.231 1.00 0.00 N ATOM 15 CA GLN 2 -5.385 -8.667 9.856 1.00 0.00 C ATOM 16 C GLN 2 -4.202 -8.814 8.918 1.00 0.00 C ATOM 17 O GLN 2 -3.262 -8.028 8.991 1.00 0.00 O ATOM 18 CB GLN 2 -5.114 -9.407 11.159 1.00 0.00 C ATOM 19 CG GLN 2 -3.930 -8.858 11.933 1.00 0.00 C ATOM 20 CD GLN 2 -4.146 -7.423 12.384 1.00 0.00 C ATOM 21 OE1 GLN 2 -5.225 -7.059 12.868 1.00 0.00 O ATOM 22 NE2 GLN 2 -3.116 -6.599 12.233 1.00 0.00 N ATOM 31 N GLU 3 -4.240 -9.822 8.047 1.00 0.00 N ATOM 32 CA GLU 3 -3.161 -10.034 7.096 1.00 0.00 C ATOM 33 C GLU 3 -3.071 -8.858 6.135 1.00 0.00 C ATOM 34 O GLU 3 -1.973 -8.428 5.783 1.00 0.00 O ATOM 35 CB GLU 3 -3.375 -11.330 6.320 1.00 0.00 C ATOM 36 CG GLU 3 -3.214 -12.593 7.150 1.00 0.00 C ATOM 37 CD GLU 3 -3.501 -13.843 6.367 1.00 0.00 C ATOM 38 OE1 GLU 3 -3.954 -13.733 5.254 1.00 0.00 O ATOM 39 OE2 GLU 3 -3.265 -14.910 6.883 1.00 0.00 O ATOM 46 N THR 4 -4.231 -8.328 5.738 1.00 0.00 N ATOM 47 CA THR 4 -4.284 -7.160 4.869 1.00 0.00 C ATOM 48 C THR 4 -3.741 -5.959 5.618 1.00 0.00 C ATOM 49 O THR 4 -2.987 -5.168 5.055 1.00 0.00 O ATOM 50 CB THR 4 -5.713 -6.860 4.380 1.00 0.00 C ATOM 51 OG1 THR 4 -6.211 -7.973 3.624 1.00 0.00 O ATOM 52 CG2 THR 4 -5.707 -5.616 3.501 1.00 0.00 C ATOM 60 N ARG 5 -4.113 -5.839 6.895 1.00 0.00 N ATOM 61 CA ARG 5 -3.630 -4.753 7.742 1.00 0.00 C ATOM 62 C ARG 5 -2.110 -4.800 7.875 1.00 0.00 C ATOM 63 O ARG 5 -1.454 -3.756 7.866 1.00 0.00 O ATOM 64 CB ARG 5 -4.244 -4.833 9.131 1.00 0.00 C ATOM 65 CG ARG 5 -5.721 -4.499 9.228 1.00 0.00 C ATOM 66 CD ARG 5 -6.210 -4.701 10.615 1.00 0.00 C ATOM 67 NE ARG 5 -7.609 -4.353 10.772 1.00 0.00 N ATOM 68 CZ ARG 5 -8.360 -4.698 11.837 1.00 0.00 C ATOM 69 NH1 ARG 5 -7.836 -5.410 12.813 1.00 0.00 N ATOM 70 NH2 ARG 5 -9.626 -4.320 11.900 1.00 0.00 N ATOM 84 N LYS 6 -1.556 -6.012 7.988 1.00 0.00 N ATOM 85 CA LYS 6 -0.114 -6.199 8.064 1.00 0.00 C ATOM 86 C LYS 6 0.549 -5.809 6.752 1.00 0.00 C ATOM 87 O LYS 6 1.597 -5.158 6.756 1.00 0.00 O ATOM 88 CB LYS 6 0.228 -7.652 8.401 1.00 0.00 C ATOM 89 CG LYS 6 -0.085 -8.078 9.829 1.00 0.00 C ATOM 90 CD LYS 6 0.263 -9.542 10.040 1.00 0.00 C ATOM 91 CE LYS 6 -0.021 -9.988 11.466 1.00 0.00 C ATOM 92 NZ LYS 6 0.317 -11.424 11.673 1.00 0.00 N ATOM 106 N LYS 7 -0.075 -6.183 5.632 1.00 0.00 N ATOM 107 CA LYS 7 0.455 -5.820 4.330 1.00 0.00 C ATOM 108 C LYS 7 0.409 -4.317 4.135 1.00 0.00 C ATOM 109 O LYS 7 1.345 -3.743 3.573 1.00 0.00 O ATOM 110 CB LYS 7 -0.305 -6.513 3.198 1.00 0.00 C ATOM 111 CG LYS 7 -0.051 -8.008 3.090 1.00 0.00 C ATOM 112 CD LYS 7 -0.805 -8.611 1.916 1.00 0.00 C ATOM 113 CE LYS 7 -0.575 -10.112 1.820 1.00 0.00 C ATOM 114 NZ LYS 7 -1.242 -10.696 0.628 1.00 0.00 N ATOM 128 N CYS 8 -0.657 -3.670 4.629 1.00 0.00 N ATOM 129 CA CYS 8 -0.723 -2.223 4.526 1.00 0.00 C ATOM 130 C CYS 8 0.391 -1.617 5.350 1.00 0.00 C ATOM 131 O CYS 8 1.173 -0.827 4.831 1.00 0.00 O ATOM 132 CB CYS 8 -2.100 -1.716 4.912 1.00 0.00 C ATOM 133 SG CYS 8 -3.354 -2.119 3.654 1.00 0.00 S ATOM 138 N THR 9 0.511 -2.056 6.606 1.00 0.00 N ATOM 139 CA THR 9 1.534 -1.573 7.531 1.00 0.00 C ATOM 140 C THR 9 2.920 -1.563 6.902 1.00 0.00 C ATOM 141 O THR 9 3.643 -0.573 7.025 1.00 0.00 O ATOM 142 CB THR 9 1.572 -2.429 8.808 1.00 0.00 C ATOM 143 OG1 THR 9 0.297 -2.375 9.463 1.00 0.00 O ATOM 144 CG2 THR 9 2.646 -1.910 9.748 1.00 0.00 C ATOM 152 N GLU 10 3.285 -2.652 6.221 1.00 0.00 N ATOM 153 CA GLU 10 4.558 -2.720 5.513 1.00 0.00 C ATOM 154 C GLU 10 4.659 -1.579 4.504 1.00 0.00 C ATOM 155 O GLU 10 5.668 -0.873 4.440 1.00 0.00 O ATOM 156 CB GLU 10 4.714 -4.062 4.798 1.00 0.00 C ATOM 157 CG GLU 10 6.044 -4.222 4.078 1.00 0.00 C ATOM 158 CD GLU 10 6.195 -5.547 3.379 1.00 0.00 C ATOM 159 OE1 GLU 10 5.310 -6.363 3.477 1.00 0.00 O ATOM 160 OE2 GLU 10 7.203 -5.740 2.740 1.00 0.00 O ATOM 167 N MET 11 3.596 -1.407 3.719 1.00 0.00 N ATOM 168 CA MET 11 3.522 -0.348 2.724 1.00 0.00 C ATOM 169 C MET 11 3.439 1.037 3.350 1.00 0.00 C ATOM 170 O MET 11 3.882 2.005 2.745 1.00 0.00 O ATOM 171 CB MET 11 2.323 -0.576 1.822 1.00 0.00 C ATOM 172 CG MET 11 2.447 -1.813 0.969 1.00 0.00 C ATOM 173 SD MET 11 3.855 -1.722 -0.154 1.00 0.00 S ATOM 174 CE MET 11 5.104 -2.630 0.742 1.00 0.00 C ATOM 184 N LYS 12 2.881 1.138 4.552 1.00 0.00 N ATOM 185 CA LYS 12 2.805 2.409 5.251 1.00 0.00 C ATOM 186 C LYS 12 4.197 2.823 5.688 1.00 0.00 C ATOM 187 O LYS 12 4.531 4.002 5.676 1.00 0.00 O ATOM 188 CB LYS 12 1.860 2.322 6.451 1.00 0.00 C ATOM 189 CG LYS 12 0.386 2.206 6.086 1.00 0.00 C ATOM 190 CD LYS 12 -0.483 2.105 7.329 1.00 0.00 C ATOM 191 CE LYS 12 -1.959 2.013 6.970 1.00 0.00 C ATOM 192 NZ LYS 12 -2.820 1.917 8.182 1.00 0.00 N ATOM 206 N LYS 13 5.025 1.845 6.040 1.00 0.00 N ATOM 207 CA LYS 13 6.409 2.121 6.380 1.00 0.00 C ATOM 208 C LYS 13 7.175 2.528 5.121 1.00 0.00 C ATOM 209 O LYS 13 8.031 3.412 5.162 1.00 0.00 O ATOM 210 CB LYS 13 7.049 0.898 7.031 1.00 0.00 C ATOM 211 CG LYS 13 6.524 0.586 8.424 1.00 0.00 C ATOM 212 CD LYS 13 7.176 -0.665 8.989 1.00 0.00 C ATOM 213 CE LYS 13 6.649 -0.982 10.380 1.00 0.00 C ATOM 214 NZ LYS 13 7.264 -2.220 10.936 1.00 0.00 N ATOM 228 N LYS 14 6.833 1.893 3.998 1.00 0.00 N ATOM 229 CA LYS 14 7.425 2.204 2.701 1.00 0.00 C ATOM 230 C LYS 14 6.980 3.577 2.189 1.00 0.00 C ATOM 231 O LYS 14 7.772 4.311 1.593 1.00 0.00 O ATOM 232 CB LYS 14 7.062 1.119 1.683 1.00 0.00 C ATOM 233 CG LYS 14 7.713 1.288 0.318 1.00 0.00 C ATOM 234 CD LYS 14 7.431 0.090 -0.579 1.00 0.00 C ATOM 235 CE LYS 14 8.051 0.268 -1.957 1.00 0.00 C ATOM 236 NZ LYS 14 9.542 0.273 -1.896 1.00 0.00 N ATOM 250 N PHE 15 5.713 3.916 2.415 1.00 0.00 N ATOM 251 CA PHE 15 5.139 5.169 1.952 1.00 0.00 C ATOM 252 C PHE 15 4.495 5.910 3.122 1.00 0.00 C ATOM 253 O PHE 15 3.272 6.054 3.169 1.00 0.00 O ATOM 254 CB PHE 15 4.054 4.906 0.903 1.00 0.00 C ATOM 255 CG PHE 15 4.464 4.081 -0.283 1.00 0.00 C ATOM 256 CD1 PHE 15 4.046 2.760 -0.386 1.00 0.00 C ATOM 257 CD2 PHE 15 5.252 4.606 -1.292 1.00 0.00 C ATOM 258 CE1 PHE 15 4.400 1.986 -1.469 1.00 0.00 C ATOM 259 CE2 PHE 15 5.610 3.832 -2.380 1.00 0.00 C ATOM 260 CZ PHE 15 5.182 2.522 -2.469 1.00 0.00 C ATOM 270 N LYS 16 5.312 6.394 4.056 1.00 0.00 N ATOM 271 CA LYS 16 4.816 7.049 5.274 1.00 0.00 C ATOM 272 C LYS 16 4.042 8.342 5.039 1.00 0.00 C ATOM 273 O LYS 16 3.203 8.718 5.857 1.00 0.00 O ATOM 274 CB LYS 16 5.979 7.327 6.225 1.00 0.00 C ATOM 275 CG LYS 16 6.574 6.078 6.856 1.00 0.00 C ATOM 276 CD LYS 16 7.723 6.413 7.790 1.00 0.00 C ATOM 277 CE LYS 16 8.303 5.158 8.425 1.00 0.00 C ATOM 278 NZ LYS 16 9.449 5.476 9.324 1.00 0.00 N ATOM 292 N ASN 17 4.315 9.021 3.934 1.00 0.00 N ATOM 293 CA ASN 17 3.618 10.263 3.634 1.00 0.00 C ATOM 294 C ASN 17 2.457 10.065 2.658 1.00 0.00 C ATOM 295 O ASN 17 1.917 11.045 2.139 1.00 0.00 O ATOM 296 CB ASN 17 4.596 11.285 3.087 1.00 0.00 C ATOM 297 CG ASN 17 5.584 11.747 4.121 1.00 0.00 C ATOM 298 OD1 ASN 17 5.232 11.953 5.288 1.00 0.00 O ATOM 299 ND2 ASN 17 6.817 11.916 3.715 1.00 0.00 N ATOM 306 N CYS 18 2.078 8.812 2.393 1.00 0.00 N ATOM 307 CA CYS 18 1.009 8.547 1.438 1.00 0.00 C ATOM 308 C CYS 18 -0.137 7.738 2.036 1.00 0.00 C ATOM 309 O CYS 18 0.043 7.005 3.010 1.00 0.00 O ATOM 310 CB CYS 18 1.573 7.796 0.244 1.00 0.00 C ATOM 311 SG CYS 18 2.897 8.689 -0.607 1.00 0.00 S ATOM 317 N GLU 19 -1.321 7.879 1.446 1.00 0.00 N ATOM 318 CA GLU 19 -2.483 7.112 1.881 1.00 0.00 C ATOM 319 C GLU 19 -2.542 5.840 1.057 1.00 0.00 C ATOM 320 O GLU 19 -2.460 5.893 -0.167 1.00 0.00 O ATOM 321 CB GLU 19 -3.776 7.915 1.728 1.00 0.00 C ATOM 322 CG GLU 19 -5.008 7.177 2.231 1.00 0.00 C ATOM 323 CD GLU 19 -6.292 7.951 2.107 1.00 0.00 C ATOM 324 OE1 GLU 19 -6.271 9.044 1.589 1.00 0.00 O ATOM 325 OE2 GLU 19 -7.304 7.443 2.538 1.00 0.00 O ATOM 332 N VAL 20 -2.656 4.684 1.702 1.00 0.00 N ATOM 333 CA VAL 20 -2.613 3.465 0.906 1.00 0.00 C ATOM 334 C VAL 20 -3.769 2.490 1.103 1.00 0.00 C ATOM 335 O VAL 20 -4.458 2.500 2.126 1.00 0.00 O ATOM 336 CB VAL 20 -1.292 2.687 1.179 1.00 0.00 C ATOM 337 CG1 VAL 20 -0.068 3.527 0.813 1.00 0.00 C ATOM 338 CG2 VAL 20 -1.233 2.269 2.642 1.00 0.00 C ATOM 348 N ARG 21 -3.939 1.627 0.099 1.00 0.00 N ATOM 349 CA ARG 21 -4.930 0.552 0.109 1.00 0.00 C ATOM 350 C ARG 21 -4.245 -0.684 -0.455 1.00 0.00 C ATOM 351 O ARG 21 -3.437 -0.567 -1.378 1.00 0.00 O ATOM 352 CB ARG 21 -6.152 0.881 -0.737 1.00 0.00 C ATOM 353 CG ARG 21 -6.946 2.094 -0.296 1.00 0.00 C ATOM 354 CD ARG 21 -7.663 1.880 0.986 1.00 0.00 C ATOM 355 NE ARG 21 -8.475 3.037 1.310 1.00 0.00 N ATOM 356 CZ ARG 21 -8.016 4.125 1.960 1.00 0.00 C ATOM 357 NH1 ARG 21 -6.770 4.178 2.371 1.00 0.00 N ATOM 358 NH2 ARG 21 -8.809 5.156 2.181 1.00 0.00 N ATOM 372 N CYS 22 -4.554 -1.875 0.061 1.00 0.00 N ATOM 373 CA CYS 22 -3.774 -2.972 -0.454 1.00 0.00 C ATOM 374 C CYS 22 -4.692 -3.931 -1.218 1.00 0.00 C ATOM 375 O CYS 22 -5.542 -4.599 -0.625 1.00 0.00 O ATOM 376 CB CYS 22 -3.117 -3.665 0.741 1.00 0.00 C ATOM 377 SG CYS 22 -2.195 -2.480 1.758 1.00 0.00 S ATOM 382 N ASP 23 -4.533 -3.986 -2.535 1.00 0.00 N ATOM 383 CA ASP 23 -5.396 -4.815 -3.369 1.00 0.00 C ATOM 384 C ASP 23 -5.027 -6.278 -3.349 1.00 0.00 C ATOM 385 O ASP 23 -4.346 -6.756 -4.254 1.00 0.00 O ATOM 386 CB ASP 23 -5.376 -4.332 -4.818 1.00 0.00 C ATOM 387 CG ASP 23 -6.322 -5.127 -5.705 1.00 0.00 C ATOM 388 OD1 ASP 23 -6.863 -6.103 -5.235 1.00 0.00 O ATOM 389 OD2 ASP 23 -6.489 -4.763 -6.846 1.00 0.00 O ATOM 394 N GLU 24 -5.529 -6.979 -2.337 1.00 0.00 N ATOM 395 CA GLU 24 -5.318 -8.412 -2.140 1.00 0.00 C ATOM 396 C GLU 24 -5.661 -9.274 -3.353 1.00 0.00 C ATOM 397 O GLU 24 -4.997 -10.281 -3.602 1.00 0.00 O ATOM 398 CB GLU 24 -6.142 -8.895 -0.945 1.00 0.00 C ATOM 399 CG GLU 24 -6.023 -10.387 -0.656 1.00 0.00 C ATOM 400 CD GLU 24 -4.653 -10.805 -0.207 1.00 0.00 C ATOM 401 OE1 GLU 24 -3.920 -9.978 0.282 1.00 0.00 O ATOM 402 OE2 GLU 24 -4.332 -11.961 -0.347 1.00 0.00 O ATOM 409 N SER 25 -6.709 -8.905 -4.089 1.00 0.00 N ATOM 410 CA SER 25 -7.148 -9.701 -5.231 1.00 0.00 C ATOM 411 C SER 25 -6.163 -9.670 -6.399 1.00 0.00 C ATOM 412 O SER 25 -6.174 -10.571 -7.239 1.00 0.00 O ATOM 413 CB SER 25 -8.505 -9.220 -5.715 1.00 0.00 C ATOM 414 OG SER 25 -8.420 -7.966 -6.337 1.00 0.00 O ATOM 420 N ASN 26 -5.313 -8.646 -6.454 1.00 0.00 N ATOM 421 CA ASN 26 -4.321 -8.555 -7.515 1.00 0.00 C ATOM 422 C ASN 26 -2.910 -8.427 -6.957 1.00 0.00 C ATOM 423 O ASN 26 -1.939 -8.438 -7.715 1.00 0.00 O ATOM 424 CB ASN 26 -4.633 -7.387 -8.429 1.00 0.00 C ATOM 425 CG ASN 26 -5.910 -7.577 -9.198 1.00 0.00 C ATOM 426 OD1 ASN 26 -6.007 -8.474 -10.045 1.00 0.00 O ATOM 427 ND2 ASN 26 -6.890 -6.755 -8.923 1.00 0.00 N ATOM 434 N HIS 27 -2.805 -8.312 -5.633 1.00 0.00 N ATOM 435 CA HIS 27 -1.541 -8.141 -4.931 1.00 0.00 C ATOM 436 C HIS 27 -0.843 -6.865 -5.393 1.00 0.00 C ATOM 437 O HIS 27 0.363 -6.852 -5.648 1.00 0.00 O ATOM 438 CB HIS 27 -0.657 -9.370 -5.117 1.00 0.00 C ATOM 439 CG HIS 27 -1.320 -10.608 -4.598 1.00 0.00 C ATOM 440 ND1 HIS 27 -1.529 -10.829 -3.251 1.00 0.00 N ATOM 441 CD2 HIS 27 -1.840 -11.680 -5.240 1.00 0.00 C ATOM 442 CE1 HIS 27 -2.146 -11.986 -3.089 1.00 0.00 C ATOM 443 NE2 HIS 27 -2.344 -12.523 -4.279 1.00 0.00 N ATOM 451 N CYS 28 -1.626 -5.791 -5.487 1.00 0.00 N ATOM 452 CA CYS 28 -1.137 -4.479 -5.901 1.00 0.00 C ATOM 453 C CYS 28 -1.406 -3.472 -4.803 1.00 0.00 C ATOM 454 O CYS 28 -2.289 -3.688 -3.977 1.00 0.00 O ATOM 455 CB CYS 28 -1.817 -4.020 -7.189 1.00 0.00 C ATOM 456 SG CYS 28 -1.530 -5.100 -8.610 1.00 0.00 S ATOM 462 N VAL 29 -0.660 -2.374 -4.773 1.00 0.00 N ATOM 463 CA VAL 29 -0.897 -1.386 -3.723 1.00 0.00 C ATOM 464 C VAL 29 -1.224 -0.009 -4.288 1.00 0.00 C ATOM 465 O VAL 29 -0.521 0.512 -5.155 1.00 0.00 O ATOM 466 CB VAL 29 0.317 -1.284 -2.778 1.00 0.00 C ATOM 467 CG1 VAL 29 0.064 -0.239 -1.694 1.00 0.00 C ATOM 468 CG2 VAL 29 0.598 -2.656 -2.189 1.00 0.00 C ATOM 478 N GLU 30 -2.315 0.569 -3.796 1.00 0.00 N ATOM 479 CA GLU 30 -2.734 1.902 -4.201 1.00 0.00 C ATOM 480 C GLU 30 -2.035 2.900 -3.311 1.00 0.00 C ATOM 481 O GLU 30 -2.133 2.809 -2.091 1.00 0.00 O ATOM 482 CB GLU 30 -4.249 2.059 -4.081 1.00 0.00 C ATOM 483 CG GLU 30 -4.801 3.409 -4.521 1.00 0.00 C ATOM 484 CD GLU 30 -6.302 3.492 -4.383 1.00 0.00 C ATOM 485 OE1 GLU 30 -6.900 2.500 -4.039 1.00 0.00 O ATOM 486 OE2 GLU 30 -6.850 4.545 -4.614 1.00 0.00 O ATOM 493 N VAL 31 -1.317 3.842 -3.911 1.00 0.00 N ATOM 494 CA VAL 31 -0.568 4.828 -3.144 1.00 0.00 C ATOM 495 C VAL 31 -0.963 6.255 -3.502 1.00 0.00 C ATOM 496 O VAL 31 -0.737 6.697 -4.625 1.00 0.00 O ATOM 497 CB VAL 31 0.940 4.639 -3.411 1.00 0.00 C ATOM 498 CG1 VAL 31 1.743 5.656 -2.627 1.00 0.00 C ATOM 499 CG2 VAL 31 1.358 3.224 -3.051 1.00 0.00 C ATOM 509 N ARG 32 -1.540 6.991 -2.557 1.00 0.00 N ATOM 510 CA ARG 32 -1.913 8.370 -2.844 1.00 0.00 C ATOM 511 C ARG 32 -0.963 9.379 -2.233 1.00 0.00 C ATOM 512 O ARG 32 -0.827 9.468 -1.013 1.00 0.00 O ATOM 513 CB ARG 32 -3.290 8.720 -2.338 1.00 0.00 C ATOM 514 CG ARG 32 -3.656 10.162 -2.667 1.00 0.00 C ATOM 515 CD ARG 32 -5.012 10.548 -2.217 1.00 0.00 C ATOM 516 NE ARG 32 -5.124 10.547 -0.767 1.00 0.00 N ATOM 517 CZ ARG 32 -4.760 11.566 0.035 1.00 0.00 C ATOM 518 NH1 ARG 32 -4.225 12.665 -0.455 1.00 0.00 N ATOM 519 NH2 ARG 32 -4.949 11.444 1.336 1.00 0.00 N ATOM 533 N CYS 33 -0.337 10.167 -3.089 1.00 0.00 N ATOM 534 CA CYS 33 0.539 11.235 -2.645 1.00 0.00 C ATOM 535 C CYS 33 -0.072 12.546 -3.096 1.00 0.00 C ATOM 536 O CYS 33 -0.090 12.841 -4.294 1.00 0.00 O ATOM 537 CB CYS 33 1.940 11.089 -3.229 1.00 0.00 C ATOM 538 SG CYS 33 3.103 12.357 -2.674 1.00 0.00 S ATOM 544 N SER 34 -0.568 13.333 -2.142 1.00 0.00 N ATOM 545 CA SER 34 -1.226 14.587 -2.475 1.00 0.00 C ATOM 546 C SER 34 -2.441 14.306 -3.359 1.00 0.00 C ATOM 547 O SER 34 -3.316 13.518 -2.989 1.00 0.00 O ATOM 548 CB SER 34 -0.247 15.540 -3.151 1.00 0.00 C ATOM 549 OG SER 34 -0.809 16.815 -3.295 1.00 0.00 O ATOM 555 N ASP 35 -2.500 14.944 -4.523 1.00 0.00 N ATOM 556 CA ASP 35 -3.611 14.738 -5.442 1.00 0.00 C ATOM 557 C ASP 35 -3.328 13.685 -6.522 1.00 0.00 C ATOM 558 O ASP 35 -4.118 13.536 -7.455 1.00 0.00 O ATOM 559 CB ASP 35 -3.992 16.060 -6.107 1.00 0.00 C ATOM 560 CG ASP 35 -4.575 17.064 -5.122 1.00 0.00 C ATOM 561 OD1 ASP 35 -5.137 16.644 -4.138 1.00 0.00 O ATOM 562 OD2 ASP 35 -4.458 18.241 -5.365 1.00 0.00 O ATOM 567 N THR 36 -2.209 12.959 -6.411 1.00 0.00 N ATOM 568 CA THR 36 -1.873 11.951 -7.416 1.00 0.00 C ATOM 569 C THR 36 -1.837 10.545 -6.823 1.00 0.00 C ATOM 570 O THR 36 -1.590 10.365 -5.634 1.00 0.00 O ATOM 571 CB THR 36 -0.505 12.266 -8.062 1.00 0.00 C ATOM 572 OG1 THR 36 0.526 12.227 -7.063 1.00 0.00 O ATOM 573 CG2 THR 36 -0.526 13.645 -8.700 1.00 0.00 C ATOM 581 N LYS 37 -2.072 9.542 -7.666 1.00 0.00 N ATOM 582 CA LYS 37 -2.036 8.161 -7.202 1.00 0.00 C ATOM 583 C LYS 37 -1.109 7.291 -8.028 1.00 0.00 C ATOM 584 O LYS 37 -0.937 7.500 -9.230 1.00 0.00 O ATOM 585 CB LYS 37 -3.427 7.543 -7.182 1.00 0.00 C ATOM 586 CG LYS 37 -4.387 8.153 -6.173 1.00 0.00 C ATOM 587 CD LYS 37 -5.686 7.370 -6.153 1.00 0.00 C ATOM 588 CE LYS 37 -6.666 7.910 -5.127 1.00 0.00 C ATOM 589 NZ LYS 37 -7.906 7.087 -5.088 1.00 0.00 N ATOM 603 N TYR 38 -0.517 6.303 -7.362 1.00 0.00 N ATOM 604 CA TYR 38 0.439 5.401 -7.975 1.00 0.00 C ATOM 605 C TYR 38 0.064 3.952 -7.697 1.00 0.00 C ATOM 606 O TYR 38 -0.538 3.641 -6.669 1.00 0.00 O ATOM 607 CB TYR 38 1.831 5.718 -7.428 1.00 0.00 C ATOM 608 CG TYR 38 2.169 7.173 -7.643 1.00 0.00 C ATOM 609 CD1 TYR 38 1.822 8.091 -6.662 1.00 0.00 C ATOM 610 CD2 TYR 38 2.773 7.600 -8.815 1.00 0.00 C ATOM 611 CE1 TYR 38 2.066 9.430 -6.857 1.00 0.00 C ATOM 612 CE2 TYR 38 3.025 8.947 -9.005 1.00 0.00 C ATOM 613 CZ TYR 38 2.664 9.858 -8.032 1.00 0.00 C ATOM 614 OH TYR 38 2.886 11.203 -8.218 1.00 0.00 O ATOM 624 N THR 39 0.415 3.060 -8.617 1.00 0.00 N ATOM 625 CA THR 39 0.128 1.643 -8.422 1.00 0.00 C ATOM 626 C THR 39 1.413 0.849 -8.289 1.00 0.00 C ATOM 627 O THR 39 2.258 0.861 -9.187 1.00 0.00 O ATOM 628 CB THR 39 -0.701 1.056 -9.580 1.00 0.00 C ATOM 629 OG1 THR 39 -1.957 1.741 -9.677 1.00 0.00 O ATOM 630 CG2 THR 39 -0.951 -0.428 -9.335 1.00 0.00 C ATOM 638 N LEU 40 1.549 0.147 -7.174 1.00 0.00 N ATOM 639 CA LEU 40 2.716 -0.680 -6.936 1.00 0.00 C ATOM 640 C LEU 40 2.431 -2.101 -7.384 1.00 0.00 C ATOM 641 O LEU 40 1.500 -2.740 -6.892 1.00 0.00 O ATOM 642 CB LEU 40 3.088 -0.662 -5.459 1.00 0.00 C ATOM 643 CG LEU 40 4.300 -1.504 -5.055 1.00 0.00 C ATOM 644 CD1 LEU 40 5.550 -0.942 -5.718 1.00 0.00 C ATOM 645 CD2 LEU 40 4.429 -1.488 -3.543 1.00 0.00 C ATOM 657 N CYS 41 3.231 -2.585 -8.328 1.00 0.00 N ATOM 658 CA CYS 41 3.068 -3.931 -8.862 1.00 0.00 C ATOM 659 C CYS 41 4.349 -4.423 -9.527 1.00 0.00 C ATOM 660 O CYS 41 4.853 -5.497 -9.197 1.00 0.00 O ATOM 661 OXT CYS 41 4.807 -3.807 -10.488 1.00 0.00 O ATOM 662 CB CYS 41 1.925 -3.969 -9.876 1.00 0.00 C ATOM 663 SG CYS 41 1.582 -5.617 -10.539 1.00 0.00 S TER END