####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS157_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS157_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 2 - 41 4.63 5.09 LCS_AVERAGE: 96.55 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 2 - 19 2.00 8.34 LCS_AVERAGE: 34.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.86 9.55 LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 0.99 9.46 LCS_AVERAGE: 21.89 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 23 0 3 3 3 6 8 10 13 14 16 18 19 25 29 30 34 34 35 36 38 LCS_GDT Q 2 Q 2 14 18 40 8 13 13 16 16 18 21 22 24 27 30 33 34 35 36 38 39 40 40 40 LCS_GDT E 3 E 3 14 18 40 8 13 13 16 16 18 21 24 26 29 32 34 35 37 39 39 39 40 40 40 LCS_GDT T 4 T 4 14 18 40 8 13 13 16 16 18 21 23 25 29 32 34 35 37 39 39 39 40 40 40 LCS_GDT R 5 R 5 14 18 40 8 13 13 16 16 18 21 23 25 28 32 34 35 37 39 39 39 40 40 40 LCS_GDT K 6 K 6 14 18 40 8 13 13 16 16 18 22 24 26 29 32 34 35 37 39 39 39 40 40 40 LCS_GDT K 7 K 7 14 18 40 8 13 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT C 8 C 8 14 18 40 8 13 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT T 9 T 9 14 18 40 8 13 13 16 16 18 23 24 26 29 32 34 35 37 39 39 39 40 40 40 LCS_GDT E 10 E 10 14 18 40 7 13 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT M 11 M 11 14 18 40 7 13 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT K 12 K 12 14 18 40 7 13 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT K 13 K 13 14 18 40 7 13 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT K 14 K 14 14 18 40 7 13 13 16 16 18 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT F 15 F 15 14 18 40 4 9 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT K 16 K 16 14 18 40 4 8 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT N 17 N 17 13 18 40 3 8 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT C 18 C 18 6 18 40 3 5 6 10 12 16 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT E 19 E 19 6 18 40 3 5 7 10 14 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT V 20 V 20 6 13 40 3 5 7 10 12 16 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT R 21 R 21 6 13 40 3 5 7 10 12 16 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT C 22 C 22 6 13 40 4 6 7 10 12 15 20 24 26 28 32 34 35 36 39 39 39 40 40 40 LCS_GDT D 23 D 23 6 13 40 3 4 7 10 12 16 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT E 24 E 24 5 13 40 3 4 6 9 12 14 16 21 24 27 29 34 35 36 39 39 39 40 40 40 LCS_GDT S 25 S 25 7 13 40 5 6 7 10 12 16 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT N 26 N 26 7 13 40 5 6 7 10 12 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT H 27 H 27 7 13 40 5 6 7 10 12 16 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT C 28 C 28 7 13 40 5 6 7 10 12 16 21 24 26 29 32 34 35 37 39 39 39 40 40 40 LCS_GDT V 29 V 29 7 13 40 5 6 7 10 12 16 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT E 30 E 30 7 13 40 4 6 10 13 15 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT V 31 V 31 7 13 40 4 6 10 13 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT R 32 R 32 6 10 40 4 5 6 9 12 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT C 33 C 33 6 10 40 4 5 6 9 12 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT S 34 S 34 5 10 40 3 5 6 9 12 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT D 35 D 35 5 10 40 3 4 5 6 12 16 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT T 36 T 36 5 8 40 3 4 7 10 12 17 21 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT K 37 K 37 5 8 40 4 5 7 10 12 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT Y 38 Y 38 5 8 40 4 5 7 10 12 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT T 39 T 39 5 7 40 4 5 7 10 13 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT L 40 L 40 5 7 40 4 5 7 10 13 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 LCS_GDT C 41 C 41 5 7 40 3 5 5 6 7 13 20 24 26 29 32 34 35 37 39 39 39 40 40 40 LCS_AVERAGE LCS_A: 51.02 ( 21.89 34.62 96.55 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 13 13 16 16 18 23 24 26 30 32 34 35 37 39 39 39 40 40 40 GDT PERCENT_AT 19.51 31.71 31.71 39.02 39.02 43.90 56.10 58.54 63.41 73.17 78.05 82.93 85.37 90.24 95.12 95.12 95.12 97.56 97.56 97.56 GDT RMS_LOCAL 0.31 0.63 0.63 1.13 1.13 1.71 2.70 2.72 2.91 3.45 3.54 3.72 3.86 4.13 4.41 4.41 4.41 4.63 4.63 4.63 GDT RMS_ALL_AT 10.32 9.65 9.65 9.86 9.86 7.71 5.09 5.19 5.12 5.58 5.13 5.13 5.09 5.10 5.17 5.17 5.17 5.09 5.09 5.09 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 11.927 0 0.075 0.687 13.434 0.000 0.000 13.434 LGA Q 2 Q 2 6.845 0 0.641 1.064 8.850 0.455 5.455 3.345 LGA E 3 E 3 3.697 0 0.026 1.417 8.191 12.727 6.869 8.191 LGA T 4 T 4 4.918 0 0.044 1.108 7.318 5.000 3.117 7.318 LGA R 5 R 5 4.826 0 0.029 1.367 12.527 8.182 2.975 12.527 LGA K 6 K 6 2.655 0 0.074 1.221 4.704 33.636 24.242 4.145 LGA K 7 K 7 1.383 0 0.059 0.667 5.954 61.818 32.727 5.954 LGA C 8 C 8 2.020 0 0.081 0.754 4.338 55.000 42.121 4.338 LGA T 9 T 9 1.954 0 0.046 0.116 3.908 47.727 34.286 3.560 LGA E 10 E 10 2.590 0 0.049 0.975 3.321 30.909 40.000 1.295 LGA M 11 M 11 2.551 0 0.030 1.421 9.934 38.636 22.955 9.934 LGA K 12 K 12 0.715 0 0.017 0.650 3.207 62.273 49.899 3.207 LGA K 13 K 13 3.681 0 0.053 0.582 7.181 11.364 6.263 7.181 LGA K 14 K 14 5.021 0 0.014 0.878 8.152 2.727 1.212 8.152 LGA F 15 F 15 3.012 0 0.200 0.487 8.569 38.182 15.041 8.117 LGA K 16 K 16 1.579 0 0.295 0.988 4.463 70.909 45.657 4.463 LGA N 17 N 17 2.335 0 0.032 0.373 3.968 33.636 22.273 3.968 LGA C 18 C 18 3.544 0 0.221 0.917 6.287 20.909 13.939 6.287 LGA E 19 E 19 1.448 0 0.294 1.055 7.085 30.909 18.788 6.820 LGA V 20 V 20 5.966 0 0.167 0.211 10.437 2.727 1.558 10.437 LGA R 21 R 21 4.899 0 0.053 1.475 9.215 0.455 2.810 7.034 LGA C 22 C 22 9.499 0 0.130 0.886 14.007 0.000 0.000 14.007 LGA D 23 D 23 7.858 0 0.101 0.682 11.917 0.000 0.000 5.836 LGA E 24 E 24 10.590 0 0.613 0.986 16.076 0.000 0.000 16.076 LGA S 25 S 25 8.710 0 0.071 0.655 10.128 0.000 0.000 10.128 LGA N 26 N 26 3.634 0 0.059 1.176 6.734 2.727 9.318 5.996 LGA H 27 H 27 9.000 0 0.027 0.253 14.506 0.000 0.000 12.729 LGA C 28 C 28 6.637 0 0.085 0.118 7.001 0.455 0.303 7.001 LGA V 29 V 29 6.471 0 0.042 0.064 9.767 0.000 0.000 7.591 LGA E 30 E 30 2.718 0 0.010 0.608 6.874 27.727 16.566 6.164 LGA V 31 V 31 2.593 0 0.046 1.079 5.410 27.727 25.714 5.410 LGA R 32 R 32 2.411 0 0.241 1.064 7.552 38.636 18.843 5.398 LGA C 33 C 33 2.988 0 0.531 0.959 5.677 16.364 23.636 1.452 LGA S 34 S 34 3.154 0 0.153 0.179 5.355 12.727 19.394 2.747 LGA D 35 D 35 6.494 0 0.029 1.131 7.889 0.455 0.227 6.436 LGA T 36 T 36 4.902 0 0.577 0.874 5.647 1.818 1.299 5.427 LGA K 37 K 37 3.806 0 0.276 1.759 10.673 12.727 5.657 10.673 LGA Y 38 Y 38 2.672 0 0.039 1.115 7.298 32.727 24.242 7.298 LGA T 39 T 39 2.427 0 0.064 0.067 3.020 38.182 32.208 3.020 LGA L 40 L 40 2.935 0 0.183 0.862 4.611 15.455 17.500 3.373 LGA C 41 C 41 5.757 1 0.477 0.572 7.687 0.455 1.039 4.334 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 5.038 4.948 5.933 19.424 14.345 6.696 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 24 2.72 56.098 51.349 0.851 LGA_LOCAL RMSD: 2.720 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.192 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.038 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.856665 * X + 0.511120 * Y + -0.069865 * Z + 2.519493 Y_new = 0.483717 * X + 0.748800 * Y + -0.453118 * Z + -0.593839 Z_new = -0.179282 * X + -0.421965 * Y + -0.888709 * Z + -1.031212 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.627570 0.180257 -2.698302 [DEG: 150.5487 10.3280 -154.6013 ] ZXZ: -0.152983 2.665317 -2.739828 [DEG: -8.7653 152.7114 -156.9806 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS157_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS157_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 24 2.72 51.349 5.04 REMARK ---------------------------------------------------------- MOLECULE T0955TS157_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 8.108 -13.367 8.951 1.00 0.00 N ATOM 2 CA SER 1 6.867 -12.666 8.691 1.00 0.00 C ATOM 3 C SER 1 6.205 -13.246 7.449 1.00 0.00 C ATOM 4 O SER 1 6.886 -13.723 6.545 1.00 0.00 O ATOM 5 CB SER 1 7.123 -11.167 8.524 1.00 0.00 C ATOM 6 OG SER 1 5.930 -10.480 8.190 1.00 0.00 O ATOM 7 N GLN 2 4.871 -13.195 7.429 1.00 0.85 N ATOM 8 CA GLN 2 4.067 -13.596 6.292 1.00 0.85 C ATOM 9 C GLN 2 4.318 -12.709 5.082 1.00 0.85 C ATOM 10 O GLN 2 4.629 -11.528 5.226 1.00 0.85 O ATOM 11 CB GLN 2 2.580 -13.569 6.652 1.00 0.85 C ATOM 12 CD GLN 2 0.686 -14.582 7.981 1.00 0.85 C ATOM 13 CG GLN 2 2.168 -14.621 7.669 1.00 0.85 C ATOM 14 OE1 GLN 2 -0.148 -14.558 7.075 1.00 0.85 O ATOM 15 NE2 GLN 2 0.352 -14.574 9.266 1.00 0.85 N ATOM 16 N GLU 3 4.191 -13.247 3.867 1.00 0.12 N ATOM 17 CA GLU 3 4.364 -12.429 2.683 1.00 0.12 C ATOM 18 C GLU 3 3.308 -11.342 2.549 1.00 0.12 C ATOM 19 O GLU 3 3.577 -10.274 2.002 1.00 0.12 O ATOM 20 CB GLU 3 4.346 -13.298 1.424 1.00 0.12 C ATOM 21 CD GLU 3 6.850 -13.422 1.116 1.00 0.12 C ATOM 22 CG GLU 3 5.559 -14.201 1.276 1.00 0.12 C ATOM 23 OE1 GLU 3 6.896 -12.519 0.254 1.00 0.12 O ATOM 24 OE2 GLU 3 7.816 -13.712 1.853 1.00 0.12 O ATOM 25 N THR 4 2.100 -11.613 3.050 1.00 0.09 N ATOM 26 CA THR 4 1.030 -10.643 2.948 1.00 0.09 C ATOM 27 C THR 4 1.313 -9.426 3.818 1.00 0.09 C ATOM 28 O THR 4 0.998 -8.301 3.437 1.00 0.09 O ATOM 29 CB THR 4 -0.327 -11.253 3.347 1.00 0.09 C ATOM 30 OG1 THR 4 -0.643 -12.338 2.465 1.00 0.09 O ATOM 31 CG2 THR 4 -1.429 -10.211 3.250 1.00 0.09 C ATOM 32 N ARG 5 1.909 -9.645 4.992 1.00 0.04 N ATOM 33 CA ARG 5 2.256 -8.556 5.882 1.00 0.04 C ATOM 34 C ARG 5 3.299 -7.626 5.280 1.00 0.04 C ATOM 35 O ARG 5 3.287 -6.424 5.537 1.00 0.04 O ATOM 36 CB ARG 5 2.768 -9.098 7.218 1.00 0.04 C ATOM 37 CD ARG 5 3.452 -8.642 9.590 1.00 0.04 C ATOM 38 NE ARG 5 2.436 -9.528 10.156 1.00 0.04 N ATOM 39 CG ARG 5 3.003 -8.030 8.273 1.00 0.04 C ATOM 40 CZ ARG 5 2.524 -10.854 10.166 1.00 0.04 C ATOM 41 NH1 ARG 5 1.551 -11.578 10.702 1.00 0.04 N ATOM 42 NH2 ARG 5 3.583 -11.453 9.639 1.00 0.04 N ATOM 43 N LYS 6 4.202 -8.192 4.476 1.00 0.03 N ATOM 44 CA LYS 6 5.243 -7.407 3.845 1.00 0.03 C ATOM 45 C LYS 6 4.691 -6.486 2.767 1.00 0.03 C ATOM 46 O LYS 6 5.202 -5.388 2.562 1.00 0.03 O ATOM 47 CB LYS 6 6.312 -8.320 3.241 1.00 0.03 C ATOM 48 CD LYS 6 8.202 -9.931 3.603 1.00 0.03 C ATOM 49 CE LYS 6 9.064 -10.643 4.633 1.00 0.03 C ATOM 50 CG LYS 6 7.161 -9.048 4.271 1.00 0.03 C ATOM 51 NZ LYS 6 10.057 -11.551 3.994 1.00 0.03 N ATOM 52 N LYS 7 3.642 -6.926 2.069 1.00 0.03 N ATOM 53 CA LYS 7 3.016 -6.119 1.041 1.00 0.03 C ATOM 54 C LYS 7 2.270 -4.935 1.641 1.00 0.03 C ATOM 55 O LYS 7 2.381 -3.814 1.149 1.00 0.03 O ATOM 56 CB LYS 7 2.057 -6.967 0.202 1.00 0.03 C ATOM 57 CD LYS 7 1.741 -8.795 -1.488 1.00 0.03 C ATOM 58 CE LYS 7 2.433 -9.807 -2.387 1.00 0.03 C ATOM 59 CG LYS 7 2.749 -7.981 -0.695 1.00 0.03 C ATOM 60 NZ LYS 7 1.456 -10.641 -3.139 1.00 0.03 N ATOM 61 N CYS 8 1.510 -5.193 2.708 1.00 0.02 N ATOM 62 CA CYS 8 0.763 -4.160 3.396 1.00 0.02 C ATOM 63 C CYS 8 1.692 -3.129 4.023 1.00 0.02 C ATOM 64 O CYS 8 1.358 -1.948 4.088 1.00 0.02 O ATOM 65 CB CYS 8 -0.136 -4.774 4.471 1.00 0.02 C ATOM 66 SG CYS 8 -1.511 -5.754 3.824 1.00 0.02 S ATOM 67 N THR 9 2.865 -3.563 4.488 1.00 0.02 N ATOM 68 CA THR 9 3.826 -2.666 5.097 1.00 0.02 C ATOM 69 C THR 9 4.378 -1.682 4.076 1.00 0.02 C ATOM 70 O THR 9 4.634 -0.524 4.400 1.00 0.02 O ATOM 71 CB THR 9 4.990 -3.439 5.744 1.00 0.02 C ATOM 72 OG1 THR 9 4.483 -4.294 6.777 1.00 0.02 O ATOM 73 CG2 THR 9 5.993 -2.476 6.358 1.00 0.02 C ATOM 74 N GLU 10 4.566 -2.135 2.834 1.00 0.02 N ATOM 75 CA GLU 10 5.120 -1.265 1.817 1.00 0.02 C ATOM 76 C GLU 10 4.158 -0.140 1.462 1.00 0.02 C ATOM 77 O GLU 10 4.582 0.976 1.172 1.00 0.02 O ATOM 78 CB GLU 10 5.472 -2.064 0.561 1.00 0.02 C ATOM 79 CD GLU 10 7.929 -2.327 1.085 1.00 0.02 C ATOM 80 CG GLU 10 6.630 -3.032 0.745 1.00 0.02 C ATOM 81 OE1 GLU 10 8.275 -1.351 0.385 1.00 0.02 O ATOM 82 OE2 GLU 10 8.600 -2.750 2.049 1.00 0.02 O ATOM 83 N MET 11 2.857 -0.438 1.488 1.00 0.05 N ATOM 84 CA MET 11 1.849 0.569 1.220 1.00 0.05 C ATOM 85 C MET 11 1.864 1.707 2.231 1.00 0.05 C ATOM 86 O MET 11 1.586 2.853 1.885 1.00 0.05 O ATOM 87 CB MET 11 0.455 -0.061 1.196 1.00 0.05 C ATOM 88 SD MET 11 -1.731 -1.159 2.499 1.00 0.05 S ATOM 89 CE MET 11 -2.048 -1.448 4.237 1.00 0.05 C ATOM 90 CG MET 11 -0.093 -0.406 2.571 1.00 0.05 C ATOM 91 N LYS 12 2.188 1.385 3.486 1.00 0.03 N ATOM 92 CA LYS 12 2.211 2.377 4.542 1.00 0.03 C ATOM 93 C LYS 12 3.366 3.353 4.369 1.00 0.03 C ATOM 94 O LYS 12 3.256 4.520 4.736 1.00 0.03 O ATOM 95 CB LYS 12 2.304 1.700 5.911 1.00 0.03 C ATOM 96 CD LYS 12 1.206 0.310 7.689 1.00 0.03 C ATOM 97 CE LYS 12 -0.059 -0.419 8.108 1.00 0.03 C ATOM 98 CG LYS 12 1.046 0.952 6.321 1.00 0.03 C ATOM 99 NZ LYS 12 0.100 -1.096 9.425 1.00 0.03 N ATOM 100 N LYS 13 4.477 2.869 3.810 1.00 0.02 N ATOM 101 CA LYS 13 5.625 3.715 3.553 1.00 0.02 C ATOM 102 C LYS 13 5.299 4.737 2.473 1.00 0.02 C ATOM 103 O LYS 13 5.763 5.874 2.531 1.00 0.02 O ATOM 104 CB LYS 13 6.832 2.869 3.143 1.00 0.02 C ATOM 105 CD LYS 13 8.600 1.209 3.789 1.00 0.02 C ATOM 106 CE LYS 13 9.184 0.373 4.917 1.00 0.02 C ATOM 107 CG LYS 13 7.415 2.031 4.269 1.00 0.02 C ATOM 108 NZ LYS 13 10.321 -0.469 4.452 1.00 0.02 N ATOM 109 N LYS 14 4.500 4.346 1.478 1.00 0.05 N ATOM 110 CA LYS 14 4.170 5.231 0.380 1.00 0.05 C ATOM 111 C LYS 14 3.325 6.426 0.797 1.00 0.05 C ATOM 112 O LYS 14 3.476 7.517 0.252 1.00 0.05 O ATOM 113 CB LYS 14 3.433 4.467 -0.722 1.00 0.05 C ATOM 114 CD LYS 14 5.437 4.080 -2.181 1.00 0.05 C ATOM 115 CE LYS 14 6.222 3.056 -2.985 1.00 0.05 C ATOM 116 CG LYS 14 4.284 3.429 -1.433 1.00 0.05 C ATOM 117 NZ LYS 14 7.362 3.677 -3.713 1.00 0.05 N ATOM 118 N PHE 15 2.431 6.224 1.768 1.00 0.83 N ATOM 119 CA PHE 15 1.525 7.239 2.266 1.00 0.83 C ATOM 120 C PHE 15 1.618 7.442 3.771 1.00 0.83 C ATOM 121 O PHE 15 0.965 6.737 4.537 1.00 0.83 O ATOM 122 CB PHE 15 0.080 6.894 1.901 1.00 0.83 C ATOM 123 CG PHE 15 -0.164 6.794 0.422 1.00 0.83 C ATOM 124 CZ PHE 15 -0.619 6.614 -2.315 1.00 0.83 C ATOM 125 CD1 PHE 15 0.395 5.767 -0.319 1.00 0.83 C ATOM 126 CE1 PHE 15 0.171 5.674 -1.680 1.00 0.83 C ATOM 127 CD2 PHE 15 -0.952 7.726 -0.229 1.00 0.83 C ATOM 128 CE2 PHE 15 -1.177 7.634 -1.589 1.00 0.83 C ATOM 129 N LYS 16 2.426 8.405 4.221 1.00 0.30 N ATOM 130 CA LYS 16 2.587 8.669 5.637 1.00 0.30 C ATOM 131 C LYS 16 1.344 9.240 6.303 1.00 0.30 C ATOM 132 O LYS 16 0.612 8.521 6.979 1.00 0.30 O ATOM 133 CB LYS 16 3.752 9.633 5.873 1.00 0.30 C ATOM 134 CD LYS 16 5.238 10.830 7.503 1.00 0.30 C ATOM 135 CE LYS 16 5.497 11.146 8.967 1.00 0.30 C ATOM 136 CG LYS 16 4.024 9.931 7.338 1.00 0.30 C ATOM 137 NZ LYS 16 6.685 12.027 9.144 1.00 0.30 N ATOM 138 N ASN 17 1.112 10.540 6.106 1.00 0.13 N ATOM 139 CA ASN 17 -0.068 11.191 6.640 1.00 0.13 C ATOM 140 C ASN 17 -1.171 11.413 5.615 1.00 0.13 C ATOM 141 O ASN 17 -2.343 11.508 5.970 1.00 0.13 O ATOM 142 CB ASN 17 0.301 12.534 7.273 1.00 0.13 C ATOM 143 CG ASN 17 1.139 12.376 8.527 1.00 0.13 C ATOM 144 OD1 ASN 17 0.883 11.497 9.349 1.00 0.13 O ATOM 145 ND2 ASN 17 2.145 13.231 8.676 1.00 0.13 N ATOM 146 N CYS 18 -0.792 11.496 4.337 1.00 0.07 N ATOM 147 CA CYS 18 -1.754 11.707 3.274 1.00 0.07 C ATOM 148 C CYS 18 -1.781 10.463 2.395 1.00 0.07 C ATOM 149 O CYS 18 -0.890 10.263 1.572 1.00 0.07 O ATOM 150 CB CYS 18 -1.396 12.956 2.467 1.00 0.07 C ATOM 151 SG CYS 18 -2.573 13.363 1.156 1.00 0.07 S ATOM 152 N GLU 19 -2.810 9.634 2.579 1.00 0.18 N ATOM 153 CA GLU 19 -2.977 8.436 1.782 1.00 0.18 C ATOM 154 C GLU 19 -4.302 8.407 1.035 1.00 0.18 C ATOM 155 O GLU 19 -5.274 9.026 1.464 1.00 0.18 O ATOM 156 CB GLU 19 -2.867 7.188 2.661 1.00 0.18 C ATOM 157 CD GLU 19 -3.782 5.855 4.601 1.00 0.18 C ATOM 158 CG GLU 19 -3.937 7.090 3.736 1.00 0.18 C ATOM 159 OE1 GLU 19 -2.710 5.218 4.540 1.00 0.18 O ATOM 160 OE2 GLU 19 -4.733 5.524 5.340 1.00 0.18 O ATOM 161 N VAL 20 -4.340 7.683 -0.086 1.00 0.15 N ATOM 162 CA VAL 20 -5.537 7.561 -0.893 1.00 0.15 C ATOM 163 C VAL 20 -5.832 6.099 -1.195 1.00 0.15 C ATOM 164 O VAL 20 -4.922 5.273 -1.230 1.00 0.15 O ATOM 165 CB VAL 20 -5.416 8.357 -2.205 1.00 0.15 C ATOM 166 CG1 VAL 20 -6.658 8.163 -3.062 1.00 0.15 C ATOM 167 CG2 VAL 20 -5.190 9.833 -1.914 1.00 0.15 C ATOM 168 N ARG 21 -7.105 5.764 -1.416 1.00 0.21 N ATOM 169 CA ARG 21 -7.504 4.403 -1.719 1.00 0.21 C ATOM 170 C ARG 21 -8.065 4.363 -3.133 1.00 0.21 C ATOM 171 O ARG 21 -9.084 4.988 -3.418 1.00 0.21 O ATOM 172 CB ARG 21 -8.528 3.906 -0.697 1.00 0.21 C ATOM 173 CD ARG 21 -9.050 3.273 1.675 1.00 0.21 C ATOM 174 NE ARG 21 -8.560 3.200 3.049 1.00 0.21 N ATOM 175 CG ARG 21 -7.993 3.809 0.722 1.00 0.21 C ATOM 176 CZ ARG 21 -9.294 2.804 4.084 1.00 0.21 C ATOM 177 NH1 ARG 21 -8.764 2.769 5.299 1.00 0.21 N ATOM 178 NH2 ARG 21 -10.557 2.444 3.901 1.00 0.21 N ATOM 179 N CYS 22 -7.413 3.633 -4.040 1.00 0.36 N ATOM 180 CA CYS 22 -7.902 3.370 -5.379 1.00 0.36 C ATOM 181 C CYS 22 -7.994 1.861 -5.564 1.00 0.36 C ATOM 182 O CYS 22 -6.985 1.164 -5.504 1.00 0.36 O ATOM 183 CB CYS 22 -6.984 4.011 -6.421 1.00 0.36 C ATOM 184 SG CYS 22 -7.522 3.786 -8.131 1.00 0.36 S ATOM 185 N ASP 23 -9.215 1.370 -5.786 1.00 0.79 N ATOM 186 CA ASP 23 -9.448 0.004 -6.214 1.00 0.79 C ATOM 187 C ASP 23 -8.933 -0.110 -7.641 1.00 0.79 C ATOM 188 O ASP 23 -8.886 0.878 -8.369 1.00 0.79 O ATOM 189 CB ASP 23 -10.934 -0.345 -6.105 1.00 0.79 C ATOM 190 CG ASP 23 -11.399 -0.470 -4.667 1.00 0.79 C ATOM 191 OD1 ASP 23 -10.535 -0.528 -3.766 1.00 0.79 O ATOM 192 OD2 ASP 23 -12.627 -0.510 -4.441 1.00 0.79 O ATOM 193 N GLU 24 -8.543 -1.321 -8.046 1.00 0.05 N ATOM 194 CA GLU 24 -8.088 -1.563 -9.400 1.00 0.05 C ATOM 195 C GLU 24 -9.116 -2.411 -10.135 1.00 0.05 C ATOM 196 O GLU 24 -10.229 -2.602 -9.650 1.00 0.05 O ATOM 197 CB GLU 24 -6.719 -2.246 -9.392 1.00 0.05 C ATOM 198 CD GLU 24 -5.260 -0.192 -9.580 1.00 0.05 C ATOM 199 CG GLU 24 -5.616 -1.415 -8.757 1.00 0.05 C ATOM 200 OE1 GLU 24 -5.541 -0.193 -10.797 1.00 0.05 O ATOM 201 OE2 GLU 24 -4.702 0.767 -9.008 1.00 0.05 O ATOM 202 N SER 25 -8.749 -2.927 -11.311 1.00 0.06 N ATOM 203 CA SER 25 -9.459 -3.955 -12.044 1.00 0.06 C ATOM 204 C SER 25 -9.598 -5.296 -11.339 1.00 0.06 C ATOM 205 O SER 25 -10.605 -5.983 -11.497 1.00 0.06 O ATOM 206 CB SER 25 -8.785 -4.212 -13.394 1.00 0.06 C ATOM 207 OG SER 25 -7.497 -4.778 -13.220 1.00 0.06 O ATOM 208 N ASN 26 -8.566 -5.642 -10.564 1.00 0.07 N ATOM 209 CA ASN 26 -8.586 -6.806 -9.702 1.00 0.07 C ATOM 210 C ASN 26 -9.669 -6.696 -8.639 1.00 0.07 C ATOM 211 O ASN 26 -10.213 -7.705 -8.196 1.00 0.07 O ATOM 212 CB ASN 26 -7.218 -7.012 -9.048 1.00 0.07 C ATOM 213 CG ASN 26 -6.181 -7.540 -10.020 1.00 0.07 C ATOM 214 OD1 ASN 26 -6.522 -8.093 -11.065 1.00 0.07 O ATOM 215 ND2 ASN 26 -4.909 -7.370 -9.677 1.00 0.07 N ATOM 216 N HIS 27 -9.948 -5.446 -8.263 1.00 0.12 N ATOM 217 CA HIS 27 -10.945 -5.073 -7.279 1.00 0.12 C ATOM 218 C HIS 27 -10.381 -4.993 -5.868 1.00 0.12 C ATOM 219 O HIS 27 -11.094 -5.239 -4.897 1.00 0.12 O ATOM 220 CB HIS 27 -12.112 -6.064 -7.298 1.00 0.12 C ATOM 221 CG HIS 27 -12.806 -6.154 -8.621 1.00 0.12 C ATOM 222 ND1 HIS 27 -13.563 -5.124 -9.137 1.00 0.12 N ATOM 223 CE1 HIS 27 -14.055 -5.498 -10.331 1.00 0.12 C ATOM 224 CD2 HIS 27 -12.926 -7.163 -9.663 1.00 0.12 C ATOM 225 NE2 HIS 27 -13.678 -6.720 -10.653 1.00 0.12 N ATOM 226 N CYS 28 -9.095 -4.647 -5.776 1.00 0.81 N ATOM 227 CA CYS 28 -8.360 -4.598 -4.529 1.00 0.81 C ATOM 228 C CYS 28 -8.017 -3.145 -4.230 1.00 0.81 C ATOM 229 O CYS 28 -7.717 -2.375 -5.140 1.00 0.81 O ATOM 230 CB CYS 28 -7.102 -5.466 -4.614 1.00 0.81 C ATOM 231 SG CYS 28 -7.424 -7.220 -4.907 1.00 0.81 S ATOM 232 N VAL 29 -8.067 -2.785 -2.946 1.00 0.06 N ATOM 233 CA VAL 29 -7.699 -1.454 -2.506 1.00 0.06 C ATOM 234 C VAL 29 -6.184 -1.317 -2.541 1.00 0.06 C ATOM 235 O VAL 29 -5.473 -2.090 -1.903 1.00 0.06 O ATOM 236 CB VAL 29 -8.243 -1.155 -1.096 1.00 0.06 C ATOM 237 CG1 VAL 29 -7.764 0.207 -0.619 1.00 0.06 C ATOM 238 CG2 VAL 29 -9.763 -1.223 -1.086 1.00 0.06 C ATOM 239 N GLU 30 -5.698 -0.327 -3.293 1.00 0.02 N ATOM 240 CA GLU 30 -4.273 -0.078 -3.377 1.00 0.02 C ATOM 241 C GLU 30 -3.956 1.327 -2.888 1.00 0.02 C ATOM 242 O GLU 30 -4.738 2.252 -3.095 1.00 0.02 O ATOM 243 CB GLU 30 -3.780 -0.272 -4.813 1.00 0.02 C ATOM 244 CD GLU 30 -3.417 -1.850 -6.752 1.00 0.02 C ATOM 245 CG GLU 30 -3.930 -1.692 -5.334 1.00 0.02 C ATOM 246 OE1 GLU 30 -3.157 -0.818 -7.407 1.00 0.02 O ATOM 247 OE2 GLU 30 -3.277 -3.004 -7.208 1.00 0.02 O ATOM 248 N VAL 31 -2.800 1.476 -2.237 1.00 0.04 N ATOM 249 CA VAL 31 -2.404 2.761 -1.696 1.00 0.04 C ATOM 250 C VAL 31 -1.823 3.590 -2.833 1.00 0.04 C ATOM 251 O VAL 31 -1.180 3.052 -3.731 1.00 0.04 O ATOM 252 CB VAL 31 -1.398 2.602 -0.542 1.00 0.04 C ATOM 253 CG1 VAL 31 -2.012 1.797 0.594 1.00 0.04 C ATOM 254 CG2 VAL 31 -0.119 1.942 -1.037 1.00 0.04 C ATOM 255 N ARG 32 -2.058 4.903 -2.781 1.00 0.09 N ATOM 256 CA ARG 32 -1.540 5.840 -3.757 1.00 0.09 C ATOM 257 C ARG 32 -0.988 7.040 -3.000 1.00 0.09 C ATOM 258 O ARG 32 -1.586 7.490 -2.025 1.00 0.09 O ATOM 259 CB ARG 32 -2.635 6.243 -4.747 1.00 0.09 C ATOM 260 CD ARG 32 -3.282 7.501 -6.820 1.00 0.09 C ATOM 261 NE ARG 32 -3.622 6.318 -7.607 1.00 0.09 N ATOM 262 CG ARG 32 -2.174 7.219 -5.817 1.00 0.09 C ATOM 263 CZ ARG 32 -4.615 6.266 -8.488 1.00 0.09 C ATOM 264 NH1 ARG 32 -4.851 5.146 -9.157 1.00 0.09 N ATOM 265 NH2 ARG 32 -5.370 7.336 -8.699 1.00 0.09 N ATOM 266 N CYS 33 0.156 7.563 -3.447 1.00 0.23 N ATOM 267 CA CYS 33 0.934 8.522 -2.689 1.00 0.23 C ATOM 268 C CYS 33 0.940 9.846 -3.440 1.00 0.23 C ATOM 269 O CYS 33 1.311 9.898 -4.611 1.00 0.23 O ATOM 270 CB CYS 33 2.355 8.002 -2.465 1.00 0.23 C ATOM 271 SG CYS 33 3.419 9.119 -1.524 1.00 0.23 S ATOM 272 N SER 34 0.535 10.953 -2.814 1.00 0.26 N ATOM 273 CA SER 34 0.548 12.233 -3.493 1.00 0.26 C ATOM 274 C SER 34 1.914 12.835 -3.788 1.00 0.26 C ATOM 275 O SER 34 2.139 13.372 -4.871 1.00 0.26 O ATOM 276 CB SER 34 -0.236 13.273 -2.690 1.00 0.26 C ATOM 277 OG SER 34 -1.614 12.946 -2.640 1.00 0.26 O ATOM 278 N ASP 35 2.826 12.745 -2.818 1.00 0.11 N ATOM 279 CA ASP 35 4.140 13.352 -2.897 1.00 0.11 C ATOM 280 C ASP 35 5.088 12.620 -3.836 1.00 0.11 C ATOM 281 O ASP 35 5.971 13.233 -4.433 1.00 0.11 O ATOM 282 CB ASP 35 4.780 13.427 -1.509 1.00 0.11 C ATOM 283 CG ASP 35 4.117 14.458 -0.617 1.00 0.11 C ATOM 284 OD1 ASP 35 3.357 15.298 -1.143 1.00 0.11 O ATOM 285 OD2 ASP 35 4.358 14.426 0.608 1.00 0.11 O ATOM 286 N THR 36 4.907 11.304 -3.969 1.00 0.16 N ATOM 287 CA THR 36 5.774 10.549 -4.851 1.00 0.16 C ATOM 288 C THR 36 5.003 9.895 -5.989 1.00 0.16 C ATOM 289 O THR 36 5.590 9.222 -6.833 1.00 0.16 O ATOM 290 CB THR 36 6.548 9.461 -4.084 1.00 0.16 C ATOM 291 OG1 THR 36 5.623 8.560 -3.463 1.00 0.16 O ATOM 292 CG2 THR 36 7.419 10.086 -3.005 1.00 0.16 C ATOM 293 N LYS 37 3.685 10.105 -5.996 1.00 0.42 N ATOM 294 CA LYS 37 2.851 9.527 -7.029 1.00 0.42 C ATOM 295 C LYS 37 3.170 8.051 -7.220 1.00 0.42 C ATOM 296 O LYS 37 3.663 7.650 -8.271 1.00 0.42 O ATOM 297 CB LYS 37 3.030 10.281 -8.348 1.00 0.42 C ATOM 298 CD LYS 37 1.190 11.976 -8.128 1.00 0.42 C ATOM 299 CE LYS 37 0.821 13.436 -8.327 1.00 0.42 C ATOM 300 CG LYS 37 2.689 11.760 -8.267 1.00 0.42 C ATOM 301 NZ LYS 37 1.372 14.300 -7.247 1.00 0.42 N ATOM 302 N TYR 38 2.890 7.233 -6.202 1.00 0.58 N ATOM 303 CA TYR 38 3.149 5.809 -6.278 1.00 0.58 C ATOM 304 C TYR 38 1.932 5.020 -5.814 1.00 0.58 C ATOM 305 O TYR 38 1.247 5.423 -4.877 1.00 0.58 O ATOM 306 CB TYR 38 4.374 5.442 -5.440 1.00 0.58 C ATOM 307 CG TYR 38 4.705 3.966 -5.453 1.00 0.58 C ATOM 308 OH TYR 38 5.630 -0.087 -5.502 1.00 0.58 O ATOM 309 CZ TYR 38 5.324 1.254 -5.485 1.00 0.58 C ATOM 310 CD1 TYR 38 5.725 3.474 -6.259 1.00 0.58 C ATOM 311 CE1 TYR 38 6.034 2.127 -6.278 1.00 0.58 C ATOM 312 CD2 TYR 38 4.000 3.071 -4.660 1.00 0.58 C ATOM 313 CE2 TYR 38 4.296 1.721 -4.666 1.00 0.58 C ATOM 314 N THR 39 1.657 3.890 -6.470 1.00 0.23 N ATOM 315 CA THR 39 0.625 2.963 -6.049 1.00 0.23 C ATOM 316 C THR 39 1.205 1.556 -6.074 1.00 0.23 C ATOM 317 O THR 39 1.613 1.068 -7.125 1.00 0.23 O ATOM 318 CB THR 39 -0.620 3.060 -6.949 1.00 0.23 C ATOM 319 OG1 THR 39 -1.143 4.393 -6.907 1.00 0.23 O ATOM 320 CG2 THR 39 -1.699 2.100 -6.470 1.00 0.23 C ATOM 321 N LEU 40 1.109 1.176 -4.798 1.00 0.32 N ATOM 322 CA LEU 40 1.507 -0.126 -4.304 1.00 0.32 C ATOM 323 C LEU 40 0.320 -0.764 -3.596 1.00 0.32 C ATOM 324 O LEU 40 -0.522 -0.064 -3.036 1.00 0.32 O ATOM 325 CB LEU 40 2.711 0.002 -3.369 1.00 0.32 C ATOM 326 CG LEU 40 3.312 -1.308 -2.854 1.00 0.32 C ATOM 327 CD1 LEU 40 4.767 -1.113 -2.456 1.00 0.32 C ATOM 328 CD2 LEU 40 2.510 -1.842 -1.678 1.00 0.32 C ATOM 329 N CYS 41 0.239 -2.096 -3.614 1.00 0.00 N ATOM 330 CA CYS 41 -0.843 -2.823 -2.981 1.00 0.00 C ATOM 331 C CYS 41 -0.781 -2.642 -1.471 1.00 0.00 C ATOM 332 O CYS 41 0.296 -2.465 -0.907 1.00 0.00 O ATOM 333 CB CYS 41 -0.780 -4.306 -3.349 1.00 0.00 C ATOM 334 SG CYS 41 -0.998 -4.649 -5.111 1.00 0.00 S TER END