####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS157_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS157_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 6 - 41 4.90 7.96 LCS_AVERAGE: 83.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 25 - 41 1.79 10.09 LCS_AVERAGE: 37.89 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.73 16.82 LCS_AVERAGE: 22.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 16 21 0 3 3 3 6 10 13 15 16 17 17 18 19 22 24 26 31 31 33 38 LCS_GDT Q 2 Q 2 14 16 21 8 13 14 14 15 15 15 15 16 17 17 18 19 23 26 28 31 31 33 38 LCS_GDT E 3 E 3 14 16 21 8 13 14 14 15 15 15 15 16 17 21 25 27 28 31 33 35 35 37 38 LCS_GDT T 4 T 4 14 16 21 8 13 14 14 15 15 15 15 16 17 17 18 18 22 26 28 31 31 33 35 LCS_GDT R 5 R 5 14 16 21 8 13 14 14 15 15 15 15 16 17 17 18 19 23 26 28 31 31 33 38 LCS_GDT K 6 K 6 14 16 36 8 13 14 14 15 15 15 15 16 17 22 25 27 30 33 34 35 35 37 38 LCS_GDT K 7 K 7 14 16 36 8 13 14 14 15 15 15 17 21 24 27 27 30 32 33 34 35 35 37 38 LCS_GDT C 8 C 8 14 16 36 8 13 14 14 15 15 15 15 16 17 23 25 27 30 32 34 35 35 37 38 LCS_GDT T 9 T 9 14 16 36 8 13 14 14 15 15 15 15 16 17 22 25 28 32 33 34 35 35 37 38 LCS_GDT E 10 E 10 14 16 36 8 13 14 14 15 16 22 25 27 27 29 31 31 32 33 34 35 35 37 38 LCS_GDT M 11 M 11 14 16 36 8 13 14 18 19 21 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT K 12 K 12 14 16 36 8 13 14 14 15 19 22 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT K 13 K 13 14 16 36 8 13 14 14 15 15 15 15 16 16 19 27 30 32 33 34 35 35 37 38 LCS_GDT K 14 K 14 14 16 36 8 13 14 14 15 15 15 22 24 27 28 31 31 32 32 32 33 34 37 38 LCS_GDT F 15 F 15 14 16 36 4 9 14 14 18 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT K 16 K 16 4 16 36 3 7 13 18 19 21 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT N 17 N 17 4 16 36 3 6 10 12 18 20 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT C 18 C 18 4 7 36 4 7 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT E 19 E 19 5 11 36 3 4 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT V 20 V 20 5 11 36 3 4 5 15 18 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT R 21 R 21 5 11 36 3 4 12 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT C 22 C 22 5 12 36 3 5 8 15 18 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT D 23 D 23 5 12 36 3 4 11 15 18 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT E 24 E 24 5 12 36 3 4 4 6 7 12 19 22 26 27 29 31 31 32 33 34 35 35 37 38 LCS_GDT S 25 S 25 5 17 36 3 5 9 15 18 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT N 26 N 26 9 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT H 27 H 27 9 17 36 3 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 37 LCS_GDT C 28 C 28 9 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT V 29 V 29 9 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT E 30 E 30 9 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT V 31 V 31 9 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT R 32 R 32 9 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT C 33 C 33 9 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT S 34 S 34 9 17 36 4 7 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT D 35 D 35 7 17 36 3 4 9 14 18 20 22 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT T 36 T 36 7 17 36 3 7 13 18 19 21 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT K 37 K 37 6 17 36 4 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT Y 38 Y 38 6 17 36 3 10 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT T 39 T 39 6 17 36 3 6 13 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT L 40 L 40 6 17 36 3 7 13 15 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 LCS_GDT C 41 C 41 6 17 36 3 6 10 15 18 22 23 25 27 28 29 31 31 32 32 33 35 35 37 37 LCS_AVERAGE LCS_A: 47.77 ( 22.07 37.89 83.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 13 14 18 19 22 23 25 27 28 29 31 31 32 33 34 35 35 37 38 GDT PERCENT_AT 19.51 31.71 34.15 43.90 46.34 53.66 56.10 60.98 65.85 68.29 70.73 75.61 75.61 78.05 80.49 82.93 85.37 85.37 90.24 92.68 GDT RMS_LOCAL 0.29 0.56 0.73 1.43 1.50 1.86 2.01 2.32 2.56 2.72 2.92 3.29 3.29 3.50 4.45 4.68 4.74 4.74 5.31 6.68 GDT RMS_ALL_AT 17.42 16.97 16.82 9.03 9.09 10.40 10.21 9.74 9.49 9.29 9.04 9.26 9.26 9.23 7.97 7.81 7.86 7.86 7.58 6.98 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 27.886 0 0.072 0.133 28.808 0.000 0.000 28.808 LGA Q 2 Q 2 26.231 0 0.659 1.418 33.149 0.000 0.000 32.885 LGA E 3 E 3 19.212 0 0.027 1.420 22.000 0.000 0.000 18.997 LGA T 4 T 4 19.388 0 0.045 1.111 23.281 0.000 0.000 22.273 LGA R 5 R 5 21.138 0 0.021 1.012 34.318 0.000 0.000 33.012 LGA K 6 K 6 16.870 0 0.101 1.113 18.553 0.000 0.000 16.717 LGA K 7 K 7 11.243 0 0.040 0.663 13.533 0.000 0.000 11.660 LGA C 8 C 8 13.442 0 0.093 0.756 18.014 0.000 0.000 18.014 LGA T 9 T 9 13.699 0 0.069 1.040 18.260 0.000 0.000 16.855 LGA E 10 E 10 8.109 0 0.052 0.834 10.061 0.000 0.000 5.820 LGA M 11 M 11 4.015 0 0.029 0.870 6.266 9.545 5.000 4.525 LGA K 12 K 12 6.811 0 0.018 0.967 18.061 0.000 0.000 18.061 LGA K 13 K 13 8.467 0 0.069 1.246 12.085 0.000 0.000 12.085 LGA K 14 K 14 5.667 0 0.110 0.985 7.422 0.000 0.202 6.039 LGA F 15 F 15 2.946 0 0.140 1.610 11.285 24.545 8.926 11.285 LGA K 16 K 16 4.950 0 0.035 1.244 12.103 7.273 3.232 12.103 LGA N 17 N 17 5.694 0 0.259 1.038 9.357 1.818 0.909 9.357 LGA C 18 C 18 2.854 0 0.037 0.075 4.357 25.909 22.727 4.357 LGA E 19 E 19 2.491 0 0.515 0.904 9.808 34.545 15.960 9.808 LGA V 20 V 20 3.438 0 0.103 0.113 7.937 25.455 14.545 7.937 LGA R 21 R 21 1.981 0 0.158 1.177 11.392 45.000 17.025 11.392 LGA C 22 C 22 3.571 0 0.031 0.136 6.792 19.091 12.727 6.792 LGA D 23 D 23 2.151 0 0.085 0.682 6.541 16.818 19.318 5.115 LGA E 24 E 24 6.790 0 0.332 0.662 14.010 0.455 0.202 14.010 LGA S 25 S 25 3.320 0 0.113 0.658 6.114 31.364 22.727 6.114 LGA N 26 N 26 1.187 0 0.309 1.224 6.138 52.273 29.773 5.850 LGA H 27 H 27 1.005 0 0.176 1.298 5.916 64.545 36.909 5.916 LGA C 28 C 28 1.006 0 0.131 0.177 2.137 77.727 66.667 2.137 LGA V 29 V 29 0.189 0 0.025 0.037 0.595 100.000 94.805 0.534 LGA E 30 E 30 1.235 0 0.212 0.734 3.944 65.909 49.091 3.944 LGA V 31 V 31 1.251 0 0.026 1.127 3.178 65.455 56.623 3.178 LGA R 32 R 32 1.192 0 0.246 1.283 6.938 61.818 34.380 5.451 LGA C 33 C 33 1.025 0 0.537 0.958 3.524 55.909 56.667 1.616 LGA S 34 S 34 1.305 0 0.412 0.400 1.990 58.182 58.182 1.990 LGA D 35 D 35 4.235 0 0.200 1.146 9.348 11.364 5.682 9.348 LGA T 36 T 36 2.840 0 0.211 1.039 4.396 27.727 23.117 3.288 LGA K 37 K 37 1.318 0 0.117 1.186 3.865 69.545 44.646 3.352 LGA Y 38 Y 38 0.944 0 0.204 1.260 5.832 77.727 46.364 5.832 LGA T 39 T 39 1.219 0 0.127 0.193 3.101 70.000 50.390 2.947 LGA L 40 L 40 1.318 0 0.175 0.917 3.189 73.636 53.636 2.841 LGA C 41 C 41 2.937 1 0.485 0.586 4.018 17.727 13.247 3.924 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 6.950 6.825 8.410 29.058 21.065 8.780 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 25 2.32 54.878 51.836 1.033 LGA_LOCAL RMSD: 2.320 Number of atoms: 25 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.741 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.950 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.142394 * X + -0.651594 * Y + 0.745083 * Z + 0.878074 Y_new = -0.253309 * X + -0.703697 * Y + -0.663811 * Z + 0.391337 Z_new = 0.956848 * X + -0.283259 * Y + -0.064853 * Z + -7.093280 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.082907 -1.275955 -1.795870 [DEG: -119.3418 -73.1068 -102.8957 ] ZXZ: 0.843020 1.635695 1.858610 [DEG: 48.3015 93.7184 106.4905 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS157_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS157_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 25 2.32 51.836 6.95 REMARK ---------------------------------------------------------- MOLECULE T0955TS157_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 13.089 4.535 -17.026 1.00 0.00 N ATOM 2 CA SER 1 12.883 4.168 -15.640 1.00 0.00 C ATOM 3 C SER 1 13.962 3.272 -15.049 1.00 0.00 C ATOM 4 O SER 1 14.593 2.499 -15.766 1.00 0.00 O ATOM 5 CB SER 1 11.536 3.464 -15.467 1.00 0.00 C ATOM 6 OG SER 1 10.462 4.333 -15.785 1.00 0.00 O ATOM 7 N GLN 2 14.145 3.404 -13.733 1.00 0.85 N ATOM 8 CA GLN 2 15.139 2.613 -13.034 1.00 0.85 C ATOM 9 C GLN 2 14.470 1.760 -11.967 1.00 0.85 C ATOM 10 O GLN 2 13.416 2.123 -11.448 1.00 0.85 O ATOM 11 CB GLN 2 16.204 3.519 -12.412 1.00 0.85 C ATOM 12 CD GLN 2 17.841 3.580 -14.335 1.00 0.85 C ATOM 13 CG GLN 2 16.944 4.387 -13.417 1.00 0.85 C ATOM 14 OE1 GLN 2 18.565 2.690 -13.887 1.00 0.85 O ATOM 15 NE2 GLN 2 17.796 3.889 -15.626 1.00 0.85 N ATOM 16 N GLU 3 15.086 0.622 -11.639 1.00 0.12 N ATOM 17 CA GLU 3 14.494 -0.286 -10.676 1.00 0.12 C ATOM 18 C GLU 3 14.450 0.300 -9.272 1.00 0.12 C ATOM 19 O GLU 3 13.574 -0.041 -8.482 1.00 0.12 O ATOM 20 CB GLU 3 15.260 -1.610 -10.648 1.00 0.12 C ATOM 21 CD GLU 3 13.688 -2.866 -12.176 1.00 0.12 C ATOM 22 CG GLU 3 15.119 -2.435 -11.917 1.00 0.12 C ATOM 23 OE1 GLU 3 13.044 -3.383 -11.239 1.00 0.12 O ATOM 24 OE2 GLU 3 13.211 -2.686 -13.316 1.00 0.12 O ATOM 25 N THR 4 15.401 1.185 -8.962 1.00 0.09 N ATOM 26 CA THR 4 15.515 1.846 -7.678 1.00 0.09 C ATOM 27 C THR 4 14.329 2.776 -7.469 1.00 0.09 C ATOM 28 O THR 4 13.830 2.910 -6.354 1.00 0.09 O ATOM 29 CB THR 4 16.832 2.635 -7.564 1.00 0.09 C ATOM 30 OG1 THR 4 17.943 1.737 -7.687 1.00 0.09 O ATOM 31 CG2 THR 4 16.919 3.335 -6.217 1.00 0.09 C ATOM 32 N ARG 5 13.878 3.421 -8.547 1.00 0.04 N ATOM 33 CA ARG 5 12.729 4.302 -8.473 1.00 0.04 C ATOM 34 C ARG 5 11.469 3.522 -8.126 1.00 0.04 C ATOM 35 O ARG 5 10.618 4.011 -7.386 1.00 0.04 O ATOM 36 CB ARG 5 12.541 5.049 -9.794 1.00 0.04 C ATOM 37 CD ARG 5 13.390 6.760 -11.422 1.00 0.04 C ATOM 38 NE ARG 5 14.393 7.787 -11.695 1.00 0.04 N ATOM 39 CG ARG 5 13.598 6.107 -10.066 1.00 0.04 C ATOM 40 CZ ARG 5 14.545 8.389 -12.870 1.00 0.04 C ATOM 41 NH1 ARG 5 15.486 9.310 -13.026 1.00 0.04 N ATOM 42 NH2 ARG 5 13.758 8.067 -13.887 1.00 0.04 N ATOM 43 N LYS 6 11.330 2.304 -8.651 1.00 0.03 N ATOM 44 CA LYS 6 10.157 1.501 -8.370 1.00 0.03 C ATOM 45 C LYS 6 10.155 0.930 -6.960 1.00 0.03 C ATOM 46 O LYS 6 9.096 0.697 -6.382 1.00 0.03 O ATOM 47 CB LYS 6 10.041 0.353 -9.376 1.00 0.03 C ATOM 48 CD LYS 6 9.383 -0.397 -11.679 1.00 0.03 C ATOM 49 CE LYS 6 10.651 -1.177 -11.988 1.00 0.03 C ATOM 50 CG LYS 6 9.673 0.795 -10.783 1.00 0.03 C ATOM 51 NZ LYS 6 10.406 -2.268 -12.971 1.00 0.03 N ATOM 52 N LYS 7 11.347 0.703 -6.401 1.00 0.03 N ATOM 53 CA LYS 7 11.451 0.192 -5.049 1.00 0.03 C ATOM 54 C LYS 7 11.050 1.249 -4.028 1.00 0.03 C ATOM 55 O LYS 7 10.367 0.947 -3.053 1.00 0.03 O ATOM 56 CB LYS 7 12.873 -0.294 -4.769 1.00 0.03 C ATOM 57 CD LYS 7 14.683 -1.980 -5.204 1.00 0.03 C ATOM 58 CE LYS 7 15.064 -3.246 -5.953 1.00 0.03 C ATOM 59 CG LYS 7 13.256 -1.560 -5.519 1.00 0.03 C ATOM 60 NZ LYS 7 16.474 -3.645 -5.687 1.00 0.03 N ATOM 61 N CYS 8 11.486 2.488 -4.270 1.00 0.02 N ATOM 62 CA CYS 8 11.183 3.578 -3.366 1.00 0.02 C ATOM 63 C CYS 8 9.706 3.940 -3.448 1.00 0.02 C ATOM 64 O CYS 8 9.115 4.376 -2.463 1.00 0.02 O ATOM 65 CB CYS 8 12.052 4.797 -3.686 1.00 0.02 C ATOM 66 SG CYS 8 13.807 4.582 -3.310 1.00 0.02 S ATOM 67 N THR 9 9.094 3.763 -4.620 1.00 0.02 N ATOM 68 CA THR 9 7.696 4.092 -4.806 1.00 0.02 C ATOM 69 C THR 9 6.779 3.110 -4.091 1.00 0.02 C ATOM 70 O THR 9 5.698 3.481 -3.639 1.00 0.02 O ATOM 71 CB THR 9 7.318 4.129 -6.299 1.00 0.02 C ATOM 72 OG1 THR 9 7.570 2.847 -6.890 1.00 0.02 O ATOM 73 CG2 THR 9 8.145 5.173 -7.033 1.00 0.02 C ATOM 74 N GLU 10 7.202 1.848 -3.982 1.00 0.02 N ATOM 75 CA GLU 10 6.394 0.862 -3.294 1.00 0.02 C ATOM 76 C GLU 10 6.340 1.122 -1.795 1.00 0.02 C ATOM 77 O GLU 10 5.323 0.870 -1.154 1.00 0.02 O ATOM 78 CB GLU 10 6.931 -0.546 -3.554 1.00 0.02 C ATOM 79 CD GLU 10 7.319 -2.412 -5.212 1.00 0.02 C ATOM 80 CG GLU 10 6.757 -1.023 -4.987 1.00 0.02 C ATOM 81 OE1 GLU 10 8.554 -2.574 -5.128 1.00 0.02 O ATOM 82 OE2 GLU 10 6.524 -3.340 -5.473 1.00 0.02 O ATOM 83 N MET 11 7.449 1.629 -1.250 1.00 0.05 N ATOM 84 CA MET 11 7.595 1.914 0.163 1.00 0.05 C ATOM 85 C MET 11 6.761 3.099 0.631 1.00 0.05 C ATOM 86 O MET 11 6.284 3.117 1.763 1.00 0.05 O ATOM 87 CB MET 11 9.062 2.176 0.508 1.00 0.05 C ATOM 88 SD MET 11 9.383 -0.434 1.376 1.00 0.05 S ATOM 89 CE MET 11 9.588 0.224 3.028 1.00 0.05 C ATOM 90 CG MET 11 9.958 0.955 0.381 1.00 0.05 C ATOM 91 N LYS 12 6.592 4.087 -0.251 1.00 0.03 N ATOM 92 CA LYS 12 5.777 5.262 -0.012 1.00 0.03 C ATOM 93 C LYS 12 4.301 4.898 0.064 1.00 0.03 C ATOM 94 O LYS 12 3.544 5.517 0.808 1.00 0.03 O ATOM 95 CB LYS 12 6.005 6.304 -1.108 1.00 0.03 C ATOM 96 CD LYS 12 5.573 7.050 -3.466 1.00 0.03 C ATOM 97 CE LYS 12 7.006 7.188 -3.954 1.00 0.03 C ATOM 98 CG LYS 12 5.437 5.915 -2.463 1.00 0.03 C ATOM 99 NZ LYS 12 7.137 8.237 -5.001 1.00 0.03 N ATOM 100 N LYS 13 3.890 3.891 -0.710 1.00 0.02 N ATOM 101 CA LYS 13 2.508 3.455 -0.707 1.00 0.02 C ATOM 102 C LYS 13 2.146 2.793 0.616 1.00 0.02 C ATOM 103 O LYS 13 1.011 2.894 1.074 1.00 0.02 O ATOM 104 CB LYS 13 2.247 2.493 -1.867 1.00 0.02 C ATOM 105 CD LYS 13 2.601 0.226 -2.886 1.00 0.02 C ATOM 106 CE LYS 13 3.347 -1.094 -2.778 1.00 0.02 C ATOM 107 CG LYS 13 2.907 1.133 -1.705 1.00 0.02 C ATOM 108 NZ LYS 13 2.960 -1.852 -1.555 1.00 0.02 N ATOM 109 N LYS 14 3.113 2.112 1.234 1.00 0.05 N ATOM 110 CA LYS 14 2.874 1.469 2.511 1.00 0.05 C ATOM 111 C LYS 14 2.699 2.475 3.640 1.00 0.05 C ATOM 112 O LYS 14 1.688 2.461 4.337 1.00 0.05 O ATOM 113 CB LYS 14 4.018 0.513 2.853 1.00 0.05 C ATOM 114 CD LYS 14 4.967 -1.219 4.402 1.00 0.05 C ATOM 115 CE LYS 14 4.791 -1.953 5.721 1.00 0.05 C ATOM 116 CG LYS 14 3.832 -0.237 4.162 1.00 0.05 C ATOM 117 NZ LYS 14 5.896 -2.920 5.970 1.00 0.05 N ATOM 118 N PHE 15 3.688 3.352 3.824 1.00 0.17 N ATOM 119 CA PHE 15 3.622 4.347 4.876 1.00 0.17 C ATOM 120 C PHE 15 4.796 5.313 4.937 1.00 0.17 C ATOM 121 O PHE 15 5.131 5.820 6.006 1.00 0.17 O ATOM 122 CB PHE 15 3.502 3.673 6.244 1.00 0.17 C ATOM 123 CG PHE 15 3.370 4.640 7.387 1.00 0.17 C ATOM 124 CZ PHE 15 3.134 6.427 9.502 1.00 0.17 C ATOM 125 CD1 PHE 15 2.160 5.253 7.657 1.00 0.17 C ATOM 126 CE1 PHE 15 2.038 6.143 8.708 1.00 0.17 C ATOM 127 CD2 PHE 15 4.456 4.935 8.191 1.00 0.17 C ATOM 128 CE2 PHE 15 4.336 5.824 9.242 1.00 0.17 C ATOM 129 N LYS 16 5.481 5.627 3.835 1.00 0.75 N ATOM 130 CA LYS 16 6.597 6.550 3.865 1.00 0.75 C ATOM 131 C LYS 16 6.324 7.744 2.962 1.00 0.75 C ATOM 132 O LYS 16 6.909 8.810 3.142 1.00 0.75 O ATOM 133 CB LYS 16 7.887 5.845 3.443 1.00 0.75 C ATOM 134 CD LYS 16 9.621 4.093 3.917 1.00 0.75 C ATOM 135 CE LYS 16 10.087 3.020 4.888 1.00 0.75 C ATOM 136 CG LYS 16 8.331 4.742 4.392 1.00 0.75 C ATOM 137 NZ LYS 16 11.336 2.356 4.423 1.00 0.75 N ATOM 138 N ASN 17 5.433 7.576 1.982 1.00 0.13 N ATOM 139 CA ASN 17 5.022 8.604 1.046 1.00 0.13 C ATOM 140 C ASN 17 3.503 8.553 0.955 1.00 0.13 C ATOM 141 O ASN 17 2.817 9.407 1.512 1.00 0.13 O ATOM 142 CB ASN 17 5.701 8.397 -0.309 1.00 0.13 C ATOM 143 CG ASN 17 5.369 9.495 -1.301 1.00 0.13 C ATOM 144 OD1 ASN 17 4.328 9.458 -1.957 1.00 0.13 O ATOM 145 ND2 ASN 17 6.254 10.479 -1.411 1.00 0.13 N ATOM 146 N CYS 18 3.013 7.536 0.243 1.00 0.07 N ATOM 147 CA CYS 18 1.589 7.309 0.103 1.00 0.07 C ATOM 148 C CYS 18 0.891 7.167 1.447 1.00 0.07 C ATOM 149 O CYS 18 1.476 6.663 2.403 1.00 0.07 O ATOM 150 CB CYS 18 1.326 6.060 -0.742 1.00 0.07 C ATOM 151 SG CYS 18 1.882 6.187 -2.457 1.00 0.07 S ATOM 152 N GLU 19 -0.366 7.614 1.508 1.00 0.83 N ATOM 153 CA GLU 19 -1.153 7.514 2.720 1.00 0.83 C ATOM 154 C GLU 19 -2.447 6.737 2.519 1.00 0.83 C ATOM 155 O GLU 19 -3.019 6.220 3.475 1.00 0.83 O ATOM 156 CB GLU 19 -1.481 8.907 3.262 1.00 0.83 C ATOM 157 CD GLU 19 -0.627 11.085 4.212 1.00 0.83 C ATOM 158 CG GLU 19 -0.264 9.708 3.691 1.00 0.83 C ATOM 159 OE1 GLU 19 -1.826 11.434 4.183 1.00 0.83 O ATOM 160 OE2 GLU 19 0.287 11.814 4.652 1.00 0.83 O ATOM 161 N VAL 20 -2.913 6.652 1.271 1.00 0.15 N ATOM 162 CA VAL 20 -4.130 5.948 0.926 1.00 0.15 C ATOM 163 C VAL 20 -3.732 4.675 0.193 1.00 0.15 C ATOM 164 O VAL 20 -3.592 4.677 -1.028 1.00 0.15 O ATOM 165 CB VAL 20 -5.069 6.824 0.077 1.00 0.15 C ATOM 166 CG1 VAL 20 -6.341 6.065 -0.268 1.00 0.15 C ATOM 167 CG2 VAL 20 -5.397 8.118 0.808 1.00 0.15 C ATOM 168 N ARG 21 -3.554 3.596 0.959 1.00 0.21 N ATOM 169 CA ARG 21 -3.190 2.331 0.352 1.00 0.21 C ATOM 170 C ARG 21 -4.251 1.271 0.608 1.00 0.21 C ATOM 171 O ARG 21 -4.243 0.618 1.649 1.00 0.21 O ATOM 172 CB ARG 21 -1.836 1.854 0.879 1.00 0.21 C ATOM 173 CD ARG 21 0.062 0.222 0.703 1.00 0.21 C ATOM 174 NE ARG 21 0.153 -0.021 2.140 1.00 0.21 N ATOM 175 CG ARG 21 -1.358 0.546 0.269 1.00 0.21 C ATOM 176 CZ ARG 21 -0.022 -1.208 2.711 1.00 0.21 C ATOM 177 NH1 ARG 21 0.080 -1.333 4.027 1.00 0.21 N ATOM 178 NH2 ARG 21 -0.299 -2.268 1.964 1.00 0.21 N ATOM 179 N CYS 22 -5.171 1.097 -0.346 1.00 0.36 N ATOM 180 CA CYS 22 -6.232 0.118 -0.227 1.00 0.36 C ATOM 181 C CYS 22 -6.068 -0.899 -1.346 1.00 0.36 C ATOM 182 O CYS 22 -5.541 -0.577 -2.408 1.00 0.36 O ATOM 183 CB CYS 22 -7.600 0.802 -0.282 1.00 0.36 C ATOM 184 SG CYS 22 -7.887 2.004 1.038 1.00 0.36 S ATOM 185 N ASP 23 -6.527 -2.127 -1.098 1.00 0.79 N ATOM 186 CA ASP 23 -6.427 -3.173 -2.097 1.00 0.79 C ATOM 187 C ASP 23 -7.398 -2.949 -3.248 1.00 0.79 C ATOM 188 O ASP 23 -8.398 -2.253 -3.093 1.00 0.79 O ATOM 189 CB ASP 23 -6.683 -4.543 -1.465 1.00 0.79 C ATOM 190 CG ASP 23 -5.553 -4.986 -0.557 1.00 0.79 C ATOM 191 OD1 ASP 23 -4.474 -4.358 -0.601 1.00 0.79 O ATOM 192 OD2 ASP 23 -5.746 -5.960 0.199 1.00 0.79 O ATOM 193 N GLU 24 -7.092 -3.548 -4.401 1.00 0.05 N ATOM 194 CA GLU 24 -7.940 -3.397 -5.567 1.00 0.05 C ATOM 195 C GLU 24 -8.752 -4.639 -5.905 1.00 0.05 C ATOM 196 O GLU 24 -9.821 -4.859 -5.339 1.00 0.05 O ATOM 197 CB GLU 24 -7.105 -3.014 -6.790 1.00 0.05 C ATOM 198 CD GLU 24 -7.069 -2.330 -9.221 1.00 0.05 C ATOM 199 CG GLU 24 -7.922 -2.771 -8.049 1.00 0.05 C ATOM 200 OE1 GLU 24 -5.835 -2.230 -9.054 1.00 0.05 O ATOM 201 OE2 GLU 24 -7.634 -2.085 -10.308 1.00 0.05 O ATOM 202 N SER 25 -8.250 -5.458 -6.832 1.00 0.06 N ATOM 203 CA SER 25 -8.927 -6.670 -7.249 1.00 0.06 C ATOM 204 C SER 25 -8.050 -7.909 -7.138 1.00 0.06 C ATOM 205 O SER 25 -8.557 -9.023 -7.024 1.00 0.06 O ATOM 206 CB SER 25 -9.424 -6.538 -8.689 1.00 0.06 C ATOM 207 OG SER 25 -8.343 -6.369 -9.590 1.00 0.06 O ATOM 208 N ASN 26 -6.730 -7.711 -7.173 1.00 0.07 N ATOM 209 CA ASN 26 -5.809 -8.824 -7.066 1.00 0.07 C ATOM 210 C ASN 26 -5.102 -8.868 -5.718 1.00 0.07 C ATOM 211 O ASN 26 -5.493 -9.626 -4.833 1.00 0.07 O ATOM 212 CB ASN 26 -4.776 -8.774 -8.192 1.00 0.07 C ATOM 213 CG ASN 26 -5.371 -9.116 -9.544 1.00 0.07 C ATOM 214 OD1 ASN 26 -6.432 -9.734 -9.627 1.00 0.07 O ATOM 215 ND2 ASN 26 -4.687 -8.713 -10.610 1.00 0.07 N ATOM 216 N HIS 27 -4.053 -8.060 -5.542 1.00 0.12 N ATOM 217 CA HIS 27 -3.354 -8.047 -4.274 1.00 0.12 C ATOM 218 C HIS 27 -2.301 -6.954 -4.162 1.00 0.12 C ATOM 219 O HIS 27 -1.668 -6.802 -3.119 1.00 0.12 O ATOM 220 CB HIS 27 -2.683 -9.398 -4.017 1.00 0.12 C ATOM 221 CG HIS 27 -2.030 -9.503 -2.675 1.00 0.12 C ATOM 222 ND1 HIS 27 -2.748 -9.600 -1.503 1.00 0.12 N ATOM 223 CE1 HIS 27 -1.891 -9.680 -0.470 1.00 0.12 C ATOM 224 CD2 HIS 27 -0.659 -9.537 -2.187 1.00 0.12 C ATOM 225 NE2 HIS 27 -0.636 -9.642 -0.873 1.00 0.12 N ATOM 226 N CYS 28 -2.121 -6.195 -5.246 1.00 0.81 N ATOM 227 CA CYS 28 -1.158 -5.113 -5.219 1.00 0.81 C ATOM 228 C CYS 28 -1.753 -3.976 -4.399 1.00 0.81 C ATOM 229 O CYS 28 -2.971 -3.852 -4.297 1.00 0.81 O ATOM 230 CB CYS 28 -0.813 -4.667 -6.641 1.00 0.81 C ATOM 231 SG CYS 28 0.023 -5.923 -7.636 1.00 0.81 S ATOM 232 N VAL 29 -0.862 -3.163 -3.827 1.00 0.06 N ATOM 233 CA VAL 29 -1.287 -2.069 -2.977 1.00 0.06 C ATOM 234 C VAL 29 -1.522 -0.871 -3.886 1.00 0.06 C ATOM 235 O VAL 29 -0.578 -0.327 -4.457 1.00 0.06 O ATOM 236 CB VAL 29 -0.248 -1.770 -1.881 1.00 0.06 C ATOM 237 CG1 VAL 29 -0.698 -0.595 -1.026 1.00 0.06 C ATOM 238 CG2 VAL 29 -0.012 -3.001 -1.019 1.00 0.06 C ATOM 239 N GLU 30 -2.781 -0.451 -4.028 1.00 0.02 N ATOM 240 CA GLU 30 -3.086 0.719 -4.827 1.00 0.02 C ATOM 241 C GLU 30 -2.856 1.861 -3.848 1.00 0.02 C ATOM 242 O GLU 30 -3.758 2.232 -3.100 1.00 0.02 O ATOM 243 CB GLU 30 -4.511 0.634 -5.378 1.00 0.02 C ATOM 244 CD GLU 30 -6.300 1.657 -6.839 1.00 0.02 C ATOM 245 CG GLU 30 -4.885 1.776 -6.309 1.00 0.02 C ATOM 246 OE1 GLU 30 -6.935 0.606 -6.606 1.00 0.02 O ATOM 247 OE2 GLU 30 -6.775 2.613 -7.487 1.00 0.02 O ATOM 248 N VAL 31 -1.633 2.396 -3.882 1.00 0.04 N ATOM 249 CA VAL 31 -1.267 3.480 -2.993 1.00 0.04 C ATOM 250 C VAL 31 -1.308 4.795 -3.759 1.00 0.04 C ATOM 251 O VAL 31 -0.858 4.865 -4.902 1.00 0.04 O ATOM 252 CB VAL 31 0.123 3.255 -2.370 1.00 0.04 C ATOM 253 CG1 VAL 31 1.187 3.181 -3.454 1.00 0.04 C ATOM 254 CG2 VAL 31 0.446 4.359 -1.376 1.00 0.04 C ATOM 255 N ARG 32 -1.847 5.843 -3.134 1.00 0.09 N ATOM 256 CA ARG 32 -1.949 7.141 -3.770 1.00 0.09 C ATOM 257 C ARG 32 -1.532 8.150 -2.710 1.00 0.09 C ATOM 258 O ARG 32 -1.917 8.030 -1.548 1.00 0.09 O ATOM 259 CB ARG 32 -3.368 7.373 -4.290 1.00 0.09 C ATOM 260 CD ARG 32 -5.217 6.682 -5.841 1.00 0.09 C ATOM 261 NE ARG 32 -5.690 5.679 -6.791 1.00 0.09 N ATOM 262 CG ARG 32 -3.789 6.416 -5.394 1.00 0.09 C ATOM 263 CZ ARG 32 -5.564 5.782 -8.110 1.00 0.09 C ATOM 264 NH1 ARG 32 -6.024 4.819 -8.897 1.00 0.09 N ATOM 265 NH2 ARG 32 -4.979 6.847 -8.640 1.00 0.09 N ATOM 266 N CYS 33 -0.742 9.154 -3.097 1.00 0.23 N ATOM 267 CA CYS 33 -0.201 10.142 -2.184 1.00 0.23 C ATOM 268 C CYS 33 -0.577 11.520 -2.712 1.00 0.23 C ATOM 269 O CYS 33 -0.197 11.887 -3.822 1.00 0.23 O ATOM 270 CB CYS 33 1.315 9.977 -2.052 1.00 0.23 C ATOM 271 SG CYS 33 2.093 11.127 -0.895 1.00 0.23 S ATOM 272 N SER 34 -1.325 12.249 -1.881 1.00 0.26 N ATOM 273 CA SER 34 -1.767 13.602 -2.157 1.00 0.26 C ATOM 274 C SER 34 -2.628 13.669 -3.410 1.00 0.26 C ATOM 275 O SER 34 -2.838 14.745 -3.966 1.00 0.26 O ATOM 276 CB SER 34 -0.566 14.538 -2.304 1.00 0.26 C ATOM 277 OG SER 34 0.202 14.573 -1.113 1.00 0.26 O ATOM 278 N ASP 35 -3.132 12.519 -3.862 1.00 0.11 N ATOM 279 CA ASP 35 -3.982 12.464 -5.034 1.00 0.11 C ATOM 280 C ASP 35 -3.339 11.833 -6.260 1.00 0.11 C ATOM 281 O ASP 35 -3.909 11.861 -7.348 1.00 0.11 O ATOM 282 CB ASP 35 -4.458 13.867 -5.417 1.00 0.11 C ATOM 283 CG ASP 35 -5.385 14.471 -4.382 1.00 0.11 C ATOM 284 OD1 ASP 35 -5.917 13.711 -3.546 1.00 0.11 O ATOM 285 OD2 ASP 35 -5.580 15.704 -4.406 1.00 0.11 O ATOM 286 N THR 36 -2.145 11.254 -6.106 1.00 0.16 N ATOM 287 CA THR 36 -1.371 10.596 -7.140 1.00 0.16 C ATOM 288 C THR 36 -1.407 9.094 -6.898 1.00 0.16 C ATOM 289 O THR 36 -1.910 8.639 -5.872 1.00 0.16 O ATOM 290 CB THR 36 0.081 11.106 -7.169 1.00 0.16 C ATOM 291 OG1 THR 36 0.738 10.758 -5.945 1.00 0.16 O ATOM 292 CG2 THR 36 0.111 12.620 -7.323 1.00 0.16 C ATOM 293 N LYS 37 -0.872 8.323 -7.848 1.00 0.42 N ATOM 294 CA LYS 37 -0.884 6.882 -7.698 1.00 0.42 C ATOM 295 C LYS 37 0.480 6.215 -7.801 1.00 0.42 C ATOM 296 O LYS 37 1.369 6.717 -8.486 1.00 0.42 O ATOM 297 CB LYS 37 -1.802 6.242 -8.741 1.00 0.42 C ATOM 298 CD LYS 37 -2.878 4.169 -9.658 1.00 0.42 C ATOM 299 CE LYS 37 -2.986 2.656 -9.547 1.00 0.42 C ATOM 300 CG LYS 37 -1.915 4.731 -8.625 1.00 0.42 C ATOM 301 NZ LYS 37 -3.906 2.088 -10.570 1.00 0.42 N ATOM 302 N TYR 38 0.634 5.080 -7.115 1.00 0.44 N ATOM 303 CA TYR 38 1.883 4.346 -7.115 1.00 0.44 C ATOM 304 C TYR 38 1.553 2.872 -6.936 1.00 0.44 C ATOM 305 O TYR 38 1.253 2.430 -5.830 1.00 0.44 O ATOM 306 CB TYR 38 2.808 4.863 -6.011 1.00 0.44 C ATOM 307 CG TYR 38 3.209 6.312 -6.175 1.00 0.44 C ATOM 308 OH TYR 38 4.299 10.299 -6.620 1.00 0.44 O ATOM 309 CZ TYR 38 3.940 8.980 -6.474 1.00 0.44 C ATOM 310 CD1 TYR 38 2.420 7.332 -5.659 1.00 0.44 C ATOM 311 CE1 TYR 38 2.779 8.658 -5.804 1.00 0.44 C ATOM 312 CD2 TYR 38 4.375 6.655 -6.847 1.00 0.44 C ATOM 313 CE2 TYR 38 4.751 7.976 -7.003 1.00 0.44 C ATOM 314 N THR 39 1.617 2.133 -8.046 1.00 0.23 N ATOM 315 CA THR 39 1.268 0.727 -8.057 1.00 0.23 C ATOM 316 C THR 39 2.348 -0.088 -7.360 1.00 0.23 C ATOM 317 O THR 39 3.229 -0.643 -8.012 1.00 0.23 O ATOM 318 CB THR 39 1.065 0.207 -9.493 1.00 0.23 C ATOM 319 OG1 THR 39 0.007 0.941 -10.124 1.00 0.23 O ATOM 320 CG2 THR 39 0.692 -1.267 -9.478 1.00 0.23 C ATOM 321 N LEU 40 2.270 -0.154 -6.029 1.00 0.32 N ATOM 322 CA LEU 40 3.232 -0.945 -5.289 1.00 0.32 C ATOM 323 C LEU 40 2.866 -2.421 -5.354 1.00 0.32 C ATOM 324 O LEU 40 1.692 -2.768 -5.456 1.00 0.32 O ATOM 325 CB LEU 40 3.307 -0.475 -3.834 1.00 0.32 C ATOM 326 CG LEU 40 4.313 -1.200 -2.938 1.00 0.32 C ATOM 327 CD1 LEU 40 5.736 -0.932 -3.401 1.00 0.32 C ATOM 328 CD2 LEU 40 4.140 -0.779 -1.486 1.00 0.32 C ATOM 329 N CYS 41 3.865 -3.305 -5.294 1.00 0.00 N ATOM 330 CA CYS 41 3.555 -4.720 -5.251 1.00 0.00 C ATOM 331 C CYS 41 4.123 -5.300 -3.964 1.00 0.00 C ATOM 332 O CYS 41 5.132 -4.817 -3.454 1.00 0.00 O ATOM 333 CB CYS 41 4.121 -5.429 -6.484 1.00 0.00 C ATOM 334 SG CYS 41 3.465 -4.828 -8.058 1.00 0.00 S TER END